AlfalfaGEDB | MS.gene56658

M. sativa cultivar XinJiangDaYe / MS.gene56658

KEGG: K25380
GO: -
PFAM: PF02163.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56658.t1	XP_003616603.2	98.2	446	8	0	2	447	69	514	9.90E-246	859

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56658.t1	Q0JQS5	73.7	403	105	1	45	447	143	544	1.9e-176	620.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56658.t1	G7KGX9	98.2	446	8	0	2	447	69	514	7.1e-246	859.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049427	MS.gene56658	0.862105	6.41E-64	-1.69E-46
MS.gene049491	MS.gene56658	0.816541	5.24E-52	-1.69E-46
MS.gene049609	MS.gene56658	0.822727	2.03E-53	-1.69E-46
MS.gene049805	MS.gene56658	0.816686	4.87E-52	-1.69E-46
MS.gene050397	MS.gene56658	0.81166	6.26E-51	-1.69E-46
MS.gene050404	MS.gene56658	0.816656	4.94E-52	-1.69E-46
MS.gene050529	MS.gene56658	0.80568	1.19E-49	-1.69E-46
MS.gene050593	MS.gene56658	0.814406	1.57E-51	-1.69E-46
MS.gene050670	MS.gene56658	0.801289	9.66E-49	-1.69E-46
MS.gene050772	MS.gene56658	0.803322	3.68E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56658.t1	MTR_5g082260	98.206	446	8	0	2	447	69	514	0.0	874
MS.gene56658.t1	MTR_7g086430	30.788	419	250	7	48	434	115	525	1.00e-46	169
MS.gene56658.t1	MTR_7g086430	30.464	302	170	7	48	317	115	408	4.74e-30	121
MS.gene56658.t1	MTR_4g010130	27.623	467	292	14	2	434	91	545	1.82e-28	118

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56658.t1	AT5G05740	70.089	448	118	2	2	439	76	517	0.0	626
MS.gene56658.t1	AT5G05740	70.089	448	118	2	2	439	73	514	0.0	626
MS.gene56658.t1	AT5G05740	65.828	477	118	3	2	439	76	546	0.0	612
MS.gene56658.t1	AT5G35220	28.387	465	293	8	4	434	73	531	2.57e-49	176
MS.gene56658.t1	AT1G17870	27.078	421	264	11	49	434	140	552	2.00e-22	100
MS.gene56658.t1	AT5G35210	39.316	117	68	1	243	356	1545	1661	5.02e-16	81.6

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Find 108 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGAGAAACACAATCTT+TGG	0.324342	5.1:+64428244	MS.gene56658:CDS
AACAAGACCCAATGCAAATC+CGG	0.416938	5.1:-64432486	None:intergenic
AACAAGCCAAGATCCTTACG+AGG	0.757784	5.1:+64430914	MS.gene56658:CDS
AAGTAAGTACGAGTTGTCTC+TGG	0.481786	5.1:-64431286	None:intergenic
AATAAATCGGATTGCAAATT+GGG	0.290251	5.1:-64431463	None:intergenic
AATATAATCACCTTCACACC+TGG	0.583486	5.1:-64430704	None:intergenic
AATCTGAATTTGTTAAAGGA+TGG	0.531461	5.1:+64431874	MS.gene56658:CDS
ACAACACCAATACCGTCACT+TGG	0.597252	5.1:-64432536	None:intergenic
ACAAGAGGGTTGATAGAAAT+TGG	0.269455	5.1:-64432805	None:intergenic
ACACCAATACCGTCACTTGG+AGG	0.583153	5.1:-64432533	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCTGCACAACAAAGA+AGG	-	chr5.1:64430141-64430160	None:intergenic	30.0%
AAAATCTGCACAACAAAGAA+GGG	-	chr5.1:64430140-64430159	None:intergenic	30.0%
AAACTCTGTTCTTAAGAGTA+AGG	+	chr5.1:64430587-64430606	MS.gene56658:intron	30.0%
AAATGGAGAAACACAATCTT+TGG	+	chr5.1:64428244-64428263	MS.gene56658:CDS	30.0%
AAGGAAGGCAATGATATAAA+TGG	-	chr5.1:64434302-64434321	None:intergenic	30.0%
AATCTTGGCAAATGTGTATT+GGG	-	chr5.1:64429190-64429209	None:intergenic	30.0%
ACTTAACTCCTTCAAAATTG+TGG	+	chr5.1:64431305-64431324	MS.gene56658:intron	30.0%
AGAAGGGAAAACTTTGTTAA+GGG	+	chr5.1:64429489-64429508	MS.gene56658:intron	30.0%
AGTCAAGAAACCAAGTATAT+GGG	+	chr5.1:64428696-64428715	MS.gene56658:intron	30.0%
AGTGATTGTTAAACCAGAAT+TGG	+	chr5.1:64429148-64429167	MS.gene56658:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	64428150	64434615	64428150	ID=MS.gene56658
chr5.1	mRNA	64428150	64434615	64428150	ID=MS.gene56658.t1;Parent=MS.gene56658
chr5.1	exon	64428150	64428152	64428150	ID=MS.gene56658.t1.exon1;Parent=MS.gene56658.t1
chr5.1	CDS	64428150	64428152	64428150	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1
chr5.1	exon	64428227	64428358	64428227	ID=MS.gene56658.t1.exon2;Parent=MS.gene56658.t1
chr5.1	CDS	64428227	64428358	64428227	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1
chr5.1	exon	64430665	64430715	64430665	ID=MS.gene56658.t1.exon3;Parent=MS.gene56658.t1
chr5.1	CDS	64430665	64430715	64430665	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1
chr5.1	exon	64430825	64430935	64430825	ID=MS.gene56658.t1.exon4;Parent=MS.gene56658.t1
chr5.1	CDS	64430825	64430935	64430825	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1
chr5.1	exon	64431021	64431095	64431021	ID=MS.gene56658.t1.exon5;Parent=MS.gene56658.t1
chr5.1	CDS	64431021	64431095	64431021	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1
chr5.1	exon	64431193	64431298	64431193	ID=MS.gene56658.t1.exon6;Parent=MS.gene56658.t1
chr5.1	CDS	64431193	64431298	64431193	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1
chr5.1	exon	64431392	64431485	64431392	ID=MS.gene56658.t1.exon7;Parent=MS.gene56658.t1
chr5.1	CDS	64431392	64431485	64431392	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1
chr5.1	exon	64431861	64432014	64431861	ID=MS.gene56658.t1.exon8;Parent=MS.gene56658.t1
chr5.1	CDS	64431861	64432014	64431861	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1
chr5.1	exon	64432398	64432605	64432398	ID=MS.gene56658.t1.exon9;Parent=MS.gene56658.t1
chr5.1	CDS	64432398	64432605	64432398	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1
chr5.1	exon	64432767	64432927	64432767	ID=MS.gene56658.t1.exon10;Parent=MS.gene56658.t1
chr5.1	CDS	64432767	64432927	64432767	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1
chr5.1	exon	64434367	64434615	64434367	ID=MS.gene56658.t1.exon11;Parent=MS.gene56658.t1
chr5.1	CDS	64434367	64434615	64434367	ID=cds.MS.gene56658.t1;Parent=MS.gene56658.t1

Gene Sequence

>MS.gene56658

ATGGTTATTTGCTCTGCATGTTGACCTTTGTTTTTTCATACCTTTTCCTTGACAATACAATTTTTAAACTTACGTAGGAGAAAGAAGCACATAAAAATGGAGAAACACAATCTTTGGAGGATACCTCTGAGCAAAGTAACCCTCCACCTGTAGATGCAGAACAGCTAAACAAGTTTACTGATGAAAATACAAATCAAAATGATGTGCAGGTAATGCTTGACTATTATATTCAATTTGGTATGAAATAGCTATGTCAACAAAGTTTGCGTATTACTGTTTCATTTCTTCCTTTTGTTTTATGTCTTGTTGAAGCACTTCCAAAAGCGCTATTGCTTATGGGAAAAATAAATACTATGTTCCTGGAATTATATTTTTGATTACTGAGAAGCTCACATTGATATGTAGAAGAAGGAGATGATTTTTTTAGAGTTTAGGTTTTGAAAATGTTAAAAGCAATTAATGTCCACTTCTTCATTGTTGAAGGACACCCCACAACTCTAAAGAAGGGCTCTCTGAAGAGTTAAAGCATCTACATCTAAGTCATTGAGTCAAGAAACCAAGTATATGGGTGATCCACCTACAGCGAAAGTATCTATACTGTATAGTTTGCGATTGTTAATAATTTCTTTTCACTCTGGAGTTGGGCACTCAAGTTTGTATGGTAACACAACTTGGGGTGGATTTTCAAGTTTCTGTAGAGCATGTAATCTTATTTGAGATATTGAATAGTTTGTTGGAGTGTTTCCATGGACACAATAAATAGCTGCCAAATCAAGTAAATTTTGTCTGCTCTACAATTTCTTTGTGGTGTGTTTTGCGTGTGTTTCCCAATAGAGGTATCAAAGTTTTGGTTTAGAACACATTTGTTTGAGATCCTATTATTCTACGATAACAAAGTCTTGGTTTAGAACACATTTGTTTGAGATCCTATTATTCTACGATAAATAAAGATGATGACAACTCTCAAACAAATGTGGTTAGAACTATTAAATTACAGAAGTGATTGTTAAACCAGAATTGGTGATGGGTTCTACTTCCCCAATACACATTTGCCAAGATTGAGGATATTCGACACCGTAAAGACTAATGGCGTGTTTGGGGATTTCAAGTTAGGAAATGGTAACATAATGGATGTTGAAGGCATTGAGAGTGTGAGACTAAAGCTCCACGATGCTGCAGTTCATATGTCCCAGGATGCAAGGTTGCTGATGCCAACATCGTCTCTTTGGAGAGATGAAATCACTTGAGTAGAAGTTTGATGGTCCAAAGTAGGTTTGCAAGGTGTATAGTACATAAGGGCTTGGTCCTACAAGTGAATAAAACTAGAAGAAAAATATTTAGAAGGGAAAACTTTGTTAAGGGAATGCAGTAATAGCAATTTTGTATTATAAAGTAAACTTTTCTGACGAAAAGAAGATTGGAAATTTTAATTGAGGGTGGAATTGTTACGAAAACCGATTTGAAATTTCTAACATAAATTCAAGTGAGTGATTCCAATGCATAATAAATTGCTATGCTTTTGGGGTTATTATTTTGACTATTCAAATTGAGAAACATAACTCTAGTGAGTGATTCTGATACTCATCCATCTTTGGAAGAAGTTCAAAATTTTCAATGGTGTGGAAAATGTGAAAAGTAAATAATGCCACTTATTCATTGGCTGTAAAGTTCACAACCCGCCACTATATAAAGGGTCATGTGAAGTGTTAAATAAAATTCTAGAGAAATGAGCATGTGTGAGCGGTCATGTATTAGGAGTGTCTCTTGTTAGTCCGTGTTTATTATTCCTTGTAACTCTTGAGTAGGGTATACGAATCTTTGGGGTGGTACACATAGTGGAGAGGGTTACTAATTTTCTATTGAACTTTTAATCTTATTTGAGATGATGAATATTTGGTTGGACTGTTTCCATGGACGTGGGTAAAAGTGTCGATCCACAATTTTTTTTGTGTTATATCACTTTTTCGTAGTGTGTTTTGTGTGTGTTCCCTTCTTTGTTGTGCAGATTTTTTTTTCTATCATTTTCTTATATACTCATAATTCATGAAAGAAGGGTTTCCCCCTTTTCAGTTGCAATTAAGCATATTTGTTTCTGTGGATTTGTACTTGTCACTTTTGTGACGACAAAGTCAAATTGCTTGATGAAAATGCTCCTGGTTTCAGTTTCACATTGAGGATATTCATAACTCACATTGAAGATTGTCATAAATATATTCCCTAATTAGTCCATGTCTTTGTTATTTGTCTAAATTAAATCCTTGAAACAGGACCTGATTTTTGTTAGTTACACTTGCAGTAGTTGATGTTGCTTACAACTTAGTATATAAGTCATCAAGTTGCTAGCCAAATTGATAAAGATTATCTCATTTGCTAATCATCATTTTCCAAAATTACAATCTTTTCCATCATGAACAGAAAAATAAAAAAAAGAAAGTTGAAACTCTGTTCTTAAGAGTAAGGAGCATTATGTCCTAATTTTCTCATCTATTGTACTTTGGGCTTGTGATCAAAACAGAATACGGATAACATAGAAGTTGCCAGTGGATCACCTCTGCCAGGTGTGAAGGTGATTATATTTCATGTTCAATATTTCCTATGTTAGAGGCATTCTCCCTTTTTTCATATCTCTTATGTTTTTTCTTTTTTTCTTTCTGTCCTTTATATGTCCCTAACAGCCTCAACAACTGGATGATGTAATAAAAATTCCCAAGGAAAAAATCGAAATCCTTAAAAATCAAGTGTTTGGCTTTGATACTTTTTTTGTAACAAGCCAAGATCCTTACGAGGTGTGTGCCTATCTTTCCTCTATTTAGTTTTTCATATGCTCAAAGGTCTTGTTGCATGAAGATTGGGTCCTGATTTTTCTGCTAGGGTGGAGTGCTATTCAAAGGAAACCTGCGAGGGAAAGCTTCTAAAAGTTATGATAAGATATCAAAGAGATTGCAAGTATGCCATATTTCTGTTTCATTTCTTAAGTGTGTTTTTAAGTTTTTCCATGTTGAAATAACTTCTGAACTAGATATCTGCATAACATTTGTTATAGGATAAATTTGGAGATGAATACAGGCTTTTCCTTCTAGTCAATCCTGAGGATGATAAGCCAGTGGCCGTTGTCGTTCCAAGAACTACTTTACAACCAGAGACAACTCGTACTTACTTAACTCCTTCAAAATTGTGGATCATTGTCTTCTTTTTTATTTTCTACTCATGGTTGTACTTATGCTATTACTTATCTTTTTTAGCTGTACCTGAGTGGTTTGGTGCTGCGTCTTTTGGAATCGTCACAGTGTTTACCTTACTGCTTCGCAATGTCCCCAATTTGCAATCCGATTTATTGTGAGCATTTTTCTTGTACCTTTTCTTGTCACTTCATACTCTATTATCTCTTAGGGGAAGTGTATTGCCCTACAAAACATTGTCATGTGGTTTTGTTTTCTGTGCTGATCTAGCTTTATGCGCTCATTCCTTCAAGTAAATTTCAAGGATAGTCCTAACAAATACCATGTTTGGGTACAAAAATATTGATCTTTTAGGCTTTATGTTTATTTAACAGGATGTTCTCAGTAAATGCTTTAGCTATTAATAATGAATTCTGTTCCACCTTTCATAGGAATAAATCATACAACCTGTCTTTACTCTGGTTGACTAATATTGTTTCATATCATAGATGCATTTTGAGGTTTCACCAAAATATTATTGTTGATGTTCCAGATCAACTGTTGACAATCTGAATTTGTTAAAGGATGGCCTACCTGGAGCCCTTGTTACTGCACTTATTATCGGGGTACATGAACTTGGTCACTTTCTAGTTGCCCAAAACCTTGGAGTTAAGCTTGGAGTCCCGTACTTTGTTCCTAGCTGGCAGGTTGTATGATAGAAATATTGATCTTTTAATATCAATTGTGCGAGTGTGTCTGTTTTTTATAAATATATTTCTTCAATTAACTGACAAATATTAATAAAGTGCATCATGCTTTCCATCTAATATATATCATGTAAAGCACTTAGAGTTCCTTCAATAAAATATAAACTATTCAGAGGATGCATATAATAAACTTTAGGGATGGAAATGTACCTGTTTTTTCAAACCACATAATTTAATATGTTATGGAATGCTTTCAAGATTCAAATTGACAAAATTTGGTGACATGTACGATTTTGGTATTGGTCAATTTGTTTTGGTTGTTTATATGTACTATCTCTCACGTTTTACTGTAACAGAAATTTTGATGCTTAATTTGGTGGCAGATAGGCTCTTTTGGTTCAATTACAAGGATAAGAAGCATAGTATCTAATCGTGAAGATTTGCTCAAGATTGCAGCTGCTGGACCAATTGCCGGATTTGCATTGGGTCTTGTTCTTCTGCTTCTAGGTTTTGTTATACCTCCAAGTGACGGTATTGGTGTTGTTGTTGATGCTTCTGTGTTTCACGAGTCATTTCTAGCTGGCGGCATTGGTAAGCTATATGCTTCTGATAAGCGTGCAGAAATTTAGATAAATTTAAGCTTGCATTCATTTGTGGAAATCTTTACTGCATGTATCACTTTTTTTTGTTTGCTGCTTCACTATTTTAGAAAATAAACATGTAATGACTTTTTTCTTTATGTACTGTTTTAGCAAGATTGTTTCTTGGTAACGTTCTCAAGGAAGGAACTCCAATTTCTATCAACCCTCTTGTGATCTGGGCTTGGGCAGGACTCCTCATCAATGCCATCAACAGTATTCCCGCTGGAGAAATTGATGGAGGGAGAATTTCTTTTGCCATATGGGGAAGAAAGGTATCGCATTTAATAAGTATTATTTTGATCTTGACTCTTAGGTTTGGCCAATGGTTGTTCCATTTGAGATAAAATCGATACTTCTGATCAATTCTACTTTAACCAAAGTTTAATGATAATTTGAATTCAACCACTCAGTCATCACATTTAATAAGCAATAAGTAAAAGTAAAAAGTGAAACATGATTTGCCGGTTTCTTTTTTGGACCGAAAGACATACGAATAGGATCATGACTGAAAACTCGAGAACAAGATTGTGATGCAGCCGCCCTAACAAGGTTATGAGCAACTCCATTGGGTTGCCTCTTTAGACACACAACATTAATATGTTGAAAAAGGAAGATATGTTATTTTTACATTTCAAAATAATAGCTCCAAATTTGGTTTCATTCACTTGAGTATGGTTAATGCCATCCACCACCATTTTAGAATCCGATTCAAAGATGACATTATTCAATTGTAGTTCATGTATCCAGATCATTGCATGCCAAAGACCCAAGGCTTCACCTTTATGAACATCAAAAGCTTGGTATAGTTTATTGTTATTGCTTGGATAAACTCTCCATGCTCATTCCAGATGCATATACCAAGACCTATGCCTCCTGTGTACTGAGAAAACGCAACATCAGTGTTTCATTTAATCCAAACAGCTCTCGGCTTCTGCCAAATTACAGCAGCCGTTTGCTGTCTGCCTGTGTCAAATCTACTGTCACCGTGTGCAGTTGTTCTAGCCGTGTTCCAGCTTGCCAAGTCTGCTTGGGCTCGTGCCAAAATCTGGTCTGGCTTCTCCTGAATGGACTCCCAAAGCATAGCATTCGACTCCGCCATAGACTATATAGAACCATAGCCAGATTAATGAGTGTTATTTCAAACCTGCAGCGAAAAATAAGGTTTTAAAACTGTCAAGCTGTATTGCTGTCAGTTTTGGTTCCGAGGTATTCTGCAAGCCATATTTTAGCCACCATTTTTCGCTTCTAGGACAACTTAAGGAAAAGAGGCCAAGTGTTCTCCTTGCTTGATTCGCAAACCGTACAGACATAAGGACACTCAACCCCTTTGTCTCTCACTCTTGTTTTAGTTTGTAGCACATCTATACATTCCCTCCACAAAAAGTTTTTAAATCTTGGTGGCACCTTTAAATCTTGGTGGCACCTTTTCATAAGCACTCATAACTGTAAATGTCCAATTGGAGGAGGCTTTCCAAATTCTTTTATCCTCTCGAGTTGCTAGTTTCTTAAATAATACTATTAGGATATTTAATTGAGTGGAGATCCTCTTGATTATGTACCTGCATGTATGAATATACATTTCTAAAACTAATAACATTAATTATTAGACATTTAAACATCTAAAGTTTTATTATTGAAGCTCTCCATTTATATCATTGCCTTCCTTTACTTCTTTTTATGTGTAAGATTCTAACTTAAGTCTATTTCACAGGCTTCAATTCGCTTCACAGGATTTTCGATTGTGTTGCTTGGACTGTCATCACTGCTTAATGATGTAGCTTTCTACTGGGTAGTTCTGATATTCTTCTTGCAAAGAGGTCCAATTTCTCCTCTATCAGATGAAATAACTGAACCTGATGACAAGTATGTTGCTCTCGGAATAACAGTTTTGCTCTTAGGCTTGTTAGTATGCTTGCCATACCCTTTCCCATTTATAGATGAAACCCTTGCAAGTTTCTAG

Protein sequence

>MS.gene56658.t1

MEKEAHKNGETQSLEDTSEQSNPPPVDAEQLNKFTDENTNQNDVQNTDNIEVASGSPLPGVKPQQLDDVIKIPKEKIEILKNQVFGFDTFFVTSQDPYEGGVLFKGNLRGKASKSYDKISKRLQDKFGDEYRLFLLVNPEDDKPVAVVVPRTTLQPETTPVPEWFGAASFGIVTVFTLLLRNVPNLQSDLLSTVDNLNLLKDGLPGALVTALIIGVHELGHFLVAQNLGVKLGVPYFVPSWQIGSFGSITRIRSIVSNREDLLKIAAAGPIAGFALGLVLLLLGFVIPPSDGIGVVVDASVFHESFLAGGIARLFLGNVLKEGTPISINPLVIWAWAGLLINAINSIPAGEIDGGRISFAIWGRKASIRFTGFSIVLLGLSSLLNDVAFYWVVLIFFLQRGPISPLSDEITEPDDKYVALGITVLLLGLLVCLPYPFPFIDETLASF