Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene63008 | 0.80684 | 6.76E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene63008 | 0.840346 | 9.19E-58 | -1.69E-46 |
| MS.gene049669 | MS.gene63008 | 0.808647 | 2.79E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene63008 | 0.81309 | 3.05E-51 | -1.69E-46 |
| MS.gene050156 | MS.gene63008 | 0.825464 | 4.62E-54 | -1.69E-46 |
| MS.gene050355 | MS.gene63008 | 0.806839 | 6.77E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene63008 | 0.828842 | 7.18E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene63008 | 0.802465 | 5.54E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene63008 | 0.812848 | 3.45E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene63008 | 0.802954 | 4.39E-49 | -1.69E-46 |
| MS.gene050680 | MS.gene63008 | 0.803172 | 3.96E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene63008 | 0.807701 | 4.44E-50 | -1.69E-46 |
| MS.gene050780 | MS.gene63008 | 0.812528 | 4.05E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene63008 | 0.817624 | 2.99E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene63008 | 0.809395 | 1.93E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene63008 | 0.821425 | 4.07E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene63008 | 0.811146 | 8.10E-51 | -1.69E-46 |
| MS.gene052190 | MS.gene63008 | 0.813094 | 3.05E-51 | -1.69E-46 |
| MS.gene052208 | MS.gene63008 | 0.82798 | 1.16E-54 | -1.69E-46 |
| MS.gene052333 | MS.gene63008 | 0.846938 | 1.59E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene63008 | 0.840446 | 8.65E-58 | -1.69E-46 |
| MS.gene052582 | MS.gene63008 | 0.800633 | 1.32E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene63008 | 0.806706 | 7.22E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene63008 | 0.832915 | 7.20E-56 | -1.69E-46 |
| MS.gene052773 | MS.gene63008 | 0.824686 | 7.06E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene63008 | 0.812131 | 4.95E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene63008 | 0.840932 | 6.45E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene63008 | 0.809693 | 1.67E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene63008 | 0.841367 | 4.96E-58 | -1.69E-46 |
| MS.gene05415 | MS.gene63008 | 0.854721 | 1.02E-61 | -1.69E-46 |
| MS.gene054236 | MS.gene63008 | 0.82483 | 6.53E-54 | -1.69E-46 |
| MS.gene05423 | MS.gene63008 | 0.800188 | 1.62E-48 | -1.69E-46 |
| MS.gene054291 | MS.gene63008 | -0.833287 | 5.82E-56 | -1.69E-46 |
| MS.gene054405 | MS.gene63008 | 0.802318 | 5.94E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene63008 | 0.813645 | 2.31E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene63008 | 0.829677 | 4.50E-55 | -1.69E-46 |
| MS.gene054559 | MS.gene63008 | 0.838212 | 3.29E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene63008 | 0.824627 | 7.28E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene63008 | 0.830507 | 2.83E-55 | -1.69E-46 |
| MS.gene05510 | MS.gene63008 | 0.806234 | 9.08E-50 | -1.69E-46 |
| MS.gene055166 | MS.gene63008 | 0.809385 | 1.94E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene63008 | 0.806313 | 8.74E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene63008 | 0.81259 | 3.93E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene63008 | 0.806389 | 8.43E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene63008 | 0.800772 | 1.23E-48 | -1.69E-46 |
| MS.gene055589 | MS.gene63008 | 0.806486 | 8.04E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene63008 | 0.813738 | 2.20E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene63008 | 0.849851 | 2.48E-60 | -1.69E-46 |
| MS.gene055926 | MS.gene63008 | 0.813702 | 2.24E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene63008 | 0.842994 | 1.84E-58 | -1.69E-46 |
| MS.gene056050 | MS.gene63008 | 0.813036 | 3.14E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene63008 | 0.830227 | 3.31E-55 | -1.69E-46 |
| MS.gene056173 | MS.gene63008 | 0.809109 | 2.23E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene63008 | 0.834428 | 3.02E-56 | -1.69E-46 |
| MS.gene056506 | MS.gene63008 | 0.833357 | 5.59E-56 | -1.69E-46 |
| MS.gene05690 | MS.gene63008 | 0.841879 | 3.63E-58 | -1.69E-46 |
| MS.gene057026 | MS.gene63008 | 0.862781 | 3.97E-64 | -1.69E-46 |
| MS.gene057060 | MS.gene63008 | 0.80024 | 1.58E-48 | -1.69E-46 |
| MS.gene057208 | MS.gene63008 | 0.807272 | 5.48E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene63008 | 0.802535 | 5.36E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene63008 | 0.81741 | 3.35E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene63008 | 0.828472 | 8.82E-55 | -1.69E-46 |
| MS.gene058829 | MS.gene63008 | 0.801492 | 8.78E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene63008 | 0.832243 | 1.06E-55 | -1.69E-46 |
| MS.gene059272 | MS.gene63008 | 0.821774 | 3.38E-53 | -1.69E-46 |
| MS.gene059584 | MS.gene63008 | 0.807595 | 4.68E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene63008 | 0.80131 | 9.57E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene63008 | 0.810131 | 1.34E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene63008 | 0.801971 | 7.00E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene63008 | 0.836831 | 7.43E-57 | -1.69E-46 |
| MS.gene060521 | MS.gene63008 | 0.812467 | 4.18E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene63008 | 0.801139 | 1.04E-48 | -1.69E-46 |
| MS.gene060553 | MS.gene63008 | 0.810584 | 1.07E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene63008 | 0.860554 | 1.90E-63 | -1.69E-46 |
| MS.gene060803 | MS.gene63008 | 0.807292 | 5.43E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene63008 | -0.814717 | 1.34E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 12 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTAATACTCAGGAATT+AGG | 0.219728 | 1.3:-16250221 | MS.gene63008:intron |
| TTGACAATGGCTTGAAGTTC+CGG | 0.315301 | 1.3:+16253654 | None:intergenic |
| CAATGGATATCGTCTGAGTT+TGG | 0.335601 | 1.3:-16250870 | MS.gene63008:CDS |
| AGGATGGCGTTGGAGTGTTT+TGG | 0.393788 | 1.3:-16250201 | MS.gene63008:CDS |
| ATCGTCTGAGTTTGGAGAGT+TGG | 0.458969 | 1.3:-16250862 | MS.gene63008:CDS |
| ACATGTTTCTGTTGCATCCA+TGG | 0.469525 | 1.3:-16253631 | MS.gene63008:intron |
| TTTGGCAGTGATCTCCCTGC+TGG | 0.470036 | 1.3:-16250183 | MS.gene63008:intron |
| TGGTGTACGGGTTACATCTC+CGG | 0.477444 | 1.3:-16253673 | MS.gene63008:CDS |
| CTCAGGAATTAGGATGGCGT+TGG | 0.530379 | 1.3:-16250211 | MS.gene63008:intron |
| TTAATACTCAGGAATTAGGA+TGG | 0.593289 | 1.3:-16250217 | MS.gene63008:intron |
| AACAGAAACATGTTTGACAA+TGG | 0.625197 | 1.3:+16253641 | None:intergenic |
| GATGATGGTACTGACCAGCA+GGG | 0.714852 | 1.3:+16250169 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTAAGTTTAAATATAATT+AGG | - | chr1.3:16253464-16253483 | MS.gene63008:intron | 10.0% |
| !!! | TTTTAGGAAATTTTTATATT+CGG | - | chr1.3:16249969-16249988 | MS.gene63008:intron | 10.0% |
| !! | AAAAAAAAACACAACAATTT+GGG | + | chr1.3:16249953-16249972 | None:intergenic | 15.0% |
| !! | CAGTTTATAACTAATTTATT+CGG | + | chr1.3:16250071-16250090 | None:intergenic | 15.0% |
| !! | TAAAAAAAAACACAACAATT+TGG | + | chr1.3:16249954-16249973 | None:intergenic | 15.0% |
| !! | TAGTTAAAAAATATGATGTA+GGG | - | chr1.3:16251696-16251715 | MS.gene63008:intron | 15.0% |
| !! | TATCATTATAAAGTATGAAA+CGG | + | chr1.3:16251210-16251229 | None:intergenic | 15.0% |
| !! | TGAATATGAAAATAAAAGAA+TGG | - | chr1.3:16253182-16253201 | MS.gene63008:intron | 15.0% |
| !! | TTAGTTAAAAAATATGATGT+AGG | - | chr1.3:16251695-16251714 | MS.gene63008:intron | 15.0% |
| !!! | AAATTGTTGTGTTTTTTTTT+AGG | - | chr1.3:16249953-16249972 | MS.gene63008:intron | 15.0% |
| !!! | AACACTATCAAATTTAAAAT+AGG | + | chr1.3:16251520-16251539 | None:intergenic | 15.0% |
| !!! | AACTTATTTTGTCTAAAATA+TGG | - | chr1.3:16251552-16251571 | MS.gene63008:intron | 15.0% |
| !!! | AATATTTTTAAAGAATGCAT+AGG | - | chr1.3:16252838-16252857 | MS.gene63008:intron | 15.0% |
| !!! | ACACTATCAAATTTAAAATA+GGG | + | chr1.3:16251519-16251538 | None:intergenic | 15.0% |
| !!! | AGTTCAAAATTTATTTTGAA+AGG | + | chr1.3:16250915-16250934 | None:intergenic | 15.0% |
| !!! | ATATTTTTAAAGAATGCATA+GGG | - | chr1.3:16252839-16252858 | MS.gene63008:intron | 15.0% |
| !!! | ATTCTTTTATTTTCATATTC+AGG | + | chr1.3:16253183-16253202 | None:intergenic | 15.0% |
| !!! | GAAACAGAATAATATTTTAT+TGG | + | chr1.3:16252987-16253006 | None:intergenic | 15.0% |
| !!! | GTTCAAAATTTATTTTGAAA+GGG | + | chr1.3:16250914-16250933 | None:intergenic | 15.0% |
| !!! | TATTTTAAATTTGATAGTGT+TGG | - | chr1.3:16251519-16251538 | MS.gene63008:intron | 15.0% |
| !!! | TTCTTTTATTTTCATATTCA+GGG | + | chr1.3:16253182-16253201 | None:intergenic | 15.0% |
| !! | AAAACAGTACTTACTAATTA+AGG | + | chr1.3:16252560-16252579 | None:intergenic | 20.0% |
| !! | AAATAAATTTCATCAAGATC+TGG | + | chr1.3:16253260-16253279 | None:intergenic | 20.0% |
| !! | AAGATATTATCATACAAAGT+TGG | + | chr1.3:16253442-16253461 | None:intergenic | 20.0% |
| !! | ACAATAACATTCAATAGAAT+TGG | + | chr1.3:16250745-16250764 | None:intergenic | 20.0% |
| !! | ATATTAAAATGACATTTGTG+AGG | - | chr1.3:16251867-16251886 | MS.gene63008:intron | 20.0% |
| !! | GGATGTATATTAGAAATATA+AGG | - | chr1.3:16253536-16253555 | MS.gene63008:intron | 20.0% |
| !! | GTCTGTATCTATAAAATAAT+GGG | - | chr1.3:16250158-16250177 | MS.gene63008:intron | 20.0% |
| !! | TAGAGAAGAATAAATCATTT+AGG | + | chr1.3:16252267-16252286 | None:intergenic | 20.0% |
| !! | TATAAAAAGAAGACTTCATT+AGG | + | chr1.3:16252877-16252896 | None:intergenic | 20.0% |
| !! | TATTTAACCAACCAATATTA+CGG | + | chr1.3:16251798-16251817 | None:intergenic | 20.0% |
| !! | TGTCTGTATCTATAAAATAA+TGG | - | chr1.3:16250157-16250176 | MS.gene63008:intron | 20.0% |
| !! | TTAATTAATACTCAGGAATT+AGG | - | chr1.3:16253300-16253319 | MS.gene63008:intron | 20.0% |
| !!! | AAAATTTGAGTATTTTGCTT+TGG | + | chr1.3:16250498-16250517 | None:intergenic | 20.0% |
| !!! | CACTATCAAATTTAAAATAG+GGG | + | chr1.3:16251518-16251537 | None:intergenic | 20.0% |
| !!! | TATTTTTAAAGAATGCATAG+GGG | - | chr1.3:16252840-16252859 | MS.gene63008:intron | 20.0% |
| !!! | TCTTTTATTTTCATATTCAG+GGG | + | chr1.3:16253181-16253200 | None:intergenic | 20.0% |
| !!! | TTAAACTTATGTTTTCTTCA+TGG | - | chr1.3:16252081-16252100 | MS.gene63008:intron | 20.0% |
| !!! | TTTTAGACAAAATAAGTTTG+TGG | + | chr1.3:16251550-16251569 | None:intergenic | 20.0% |
| ! | AATAGGCTGATATAAACTAT+AGG | + | chr1.3:16251279-16251298 | None:intergenic | 25.0% |
| ! | ACAATTAAGCCAAAACTAAT+AGG | - | chr1.3:16251758-16251777 | MS.gene63008:intron | 25.0% |
| ! | ACTATAACATCTTAATGAAG+AGG | + | chr1.3:16253028-16253047 | None:intergenic | 25.0% |
| ! | AGAAATGCTAAACAAAACAA+TGG | + | chr1.3:16253377-16253396 | None:intergenic | 25.0% |
| ! | ATACCTATTTATTATACACG+TGG | - | chr1.3:16250188-16250207 | MS.gene63008:CDS | 25.0% |
| ! | ATAGGCTGATATAAACTATA+GGG | + | chr1.3:16251278-16251297 | None:intergenic | 25.0% |
| ! | ATGAAAAAAGGGATGAAAAA+GGG | + | chr1.3:16251477-16251496 | None:intergenic | 25.0% |
| ! | ATGAAAATAAAAGAATGGAG+AGG | - | chr1.3:16253187-16253206 | MS.gene63008:intron | 25.0% |
| ! | ATGAGAAACAACAAATATGA+AGG | + | chr1.3:16253630-16253649 | None:intergenic | 25.0% |
| ! | ATGGAAATATTTCACAAATG+AGG | + | chr1.3:16251254-16251273 | None:intergenic | 25.0% |
| ! | ATTCAATAGAATTGGACAAA+AGG | + | chr1.3:16250737-16250756 | None:intergenic | 25.0% |
| ! | CAAATTATTTGGTTATCTCA+TGG | - | chr1.3:16251390-16251409 | MS.gene63008:intron | 25.0% |
| ! | GAAAATTGATGAAACAATAC+AGG | - | chr1.3:16250567-16250586 | MS.gene63008:intron | 25.0% |
| ! | GAAATTCATAAAGACAAATC+TGG | - | chr1.3:16252015-16252034 | MS.gene63008:intron | 25.0% |
| ! | TACTTCTCTGTCAAATTATT+TGG | - | chr1.3:16251379-16251398 | MS.gene63008:intron | 25.0% |
| ! | TATACATCAAGTTTGATGAA+GGG | + | chr1.3:16252516-16252535 | None:intergenic | 25.0% |
| ! | TATCCACGTGTATAATAAAT+AGG | + | chr1.3:16250194-16250213 | None:intergenic | 25.0% |
| ! | TATGATTACCTTGATTATGT+AGG | + | chr1.3:16250690-16250709 | None:intergenic | 25.0% |
| ! | TCTAATATACATCCTTCTAA+TGG | + | chr1.3:16253530-16253549 | None:intergenic | 25.0% |
| ! | TCTGCAAAATGATGAAAAAA+GGG | + | chr1.3:16251488-16251507 | None:intergenic | 25.0% |
| ! | TTATCTTACAACAGAAAAAG+AGG | + | chr1.3:16252764-16252783 | None:intergenic | 25.0% |
| ! | TTGTGTCTTAATTAATACTC+AGG | - | chr1.3:16253293-16253312 | MS.gene63008:intron | 25.0% |
| ! | TTTCTATATACAAACAAGAG+TGG | + | chr1.3:16249924-16249943 | None:intergenic | 25.0% |
| !! | AACTTTTTATGTAAGTTGTG+AGG | - | chr1.3:16251898-16251917 | MS.gene63008:intron | 25.0% |
| !! | ACTCTAGAAAAAGGTTAAAT+TGG | - | chr1.3:16251835-16251854 | MS.gene63008:intron | 25.0% |
| !! | AGTATCAAACTTTTACTTCA+TGG | + | chr1.3:16252168-16252187 | None:intergenic | 25.0% |
| !! | ATCATACTTTTCTCCAAATA+TGG | - | chr1.3:16253494-16253513 | MS.gene63008:intron | 25.0% |
| !! | GCATTTATTTAACTTTGCAA+GGG | + | chr1.3:16251119-16251138 | None:intergenic | 25.0% |
| !! | GTTTCAAAATCTTACAGTTT+TGG | + | chr1.3:16251723-16251742 | None:intergenic | 25.0% |
| !! | TGCATTTATTTAACTTTGCA+AGG | + | chr1.3:16251120-16251139 | None:intergenic | 25.0% |
| !! | TTCAGTTACACTTCATTTTA+TGG | + | chr1.3:16253146-16253165 | None:intergenic | 25.0% |
| !!! | CAATTATCACCTATTAGTTT+TGG | + | chr1.3:16251770-16251789 | None:intergenic | 25.0% |
| !!! | GATACTGTTTTTGATACAAT+TGG | - | chr1.3:16252182-16252201 | MS.gene63008:intron | 25.0% |
| !!! | GTAAGTACTGTTTTATTCTT+TGG | - | chr1.3:16252566-16252585 | MS.gene63008:intron | 25.0% |
| !!! | TACATGACTTCATTTTTGAT+TGG | - | chr1.3:16252125-16252144 | MS.gene63008:intron | 25.0% |
| !!! | TTATTTTAGTGTTGTTCAGA+AGG | + | chr1.3:16252405-16252424 | None:intergenic | 25.0% |
| !!! | TTTTGGCTTAATTGTAGTTT+TGG | + | chr1.3:16251753-16251772 | None:intergenic | 25.0% |
| AAAACTATCTTCTGATACCA+AGG | - | chr1.3:16251424-16251443 | MS.gene63008:intron | 30.0% | |
| AAAAGAATGGAGAGGTTAAA+AGG | - | chr1.3:16253195-16253214 | MS.gene63008:intron | 30.0% | |
| AACAGAAACATGTTTGACAA+TGG | + | chr1.3:16249883-16249902 | None:intergenic | 30.0% | |
| AAGGTCAACATATGATATGT+TGG | + | chr1.3:16250718-16250737 | None:intergenic | 30.0% | |
| AATTGATGAAACAATACAGG+AGG | - | chr1.3:16250570-16250589 | MS.gene63008:intron | 30.0% | |
| ACCAGATAAATTGTGTACAA+AGG | + | chr1.3:16253604-16253623 | None:intergenic | 30.0% | |
| ACCTTTGTACACAATTTATC+TGG | - | chr1.3:16253600-16253619 | MS.gene63008:intron | 30.0% | |
| AGACAAAATAAGTTTGTGGT+GGG | + | chr1.3:16251546-16251565 | None:intergenic | 30.0% | |
| AGGTCAACATATGATATGTT+GGG | + | chr1.3:16250717-16250736 | None:intergenic | 30.0% | |
| ATCCTATGATGAATTCCATA+AGG | + | chr1.3:16252487-16252506 | None:intergenic | 30.0% | |
| ATGACATAAAGGAGATAAGA+TGG | - | chr1.3:16250614-16250633 | MS.gene63008:intron | 30.0% | |
| CTAAACAAAACAATGGATGA+TGG | + | chr1.3:16253370-16253389 | None:intergenic | 30.0% | |
| CTATACATCAAGTTTGATGA+AGG | + | chr1.3:16252517-16252536 | None:intergenic | 30.0% | |
| CTCTGCAAAATGATGAAAAA+AGG | + | chr1.3:16251489-16251508 | None:intergenic | 30.0% | |
| CTGAGAAGCAAAAAATGAAT+AGG | - | chr1.3:16253574-16253593 | MS.gene63008:intron | 30.0% | |
| CTGATATAAACTATAGGGAA+TGG | + | chr1.3:16251273-16251292 | None:intergenic | 30.0% | |
| GAAAAGCTATTACATGAGAA+AGG | + | chr1.3:16253671-16253690 | None:intergenic | 30.0% | |
| GAAAGTAATCATGTTCCTTA+TGG | - | chr1.3:16252469-16252488 | MS.gene63008:intron | 30.0% | |
| GAAATATTTCACAAATGAGG+AGG | + | chr1.3:16251251-16251270 | None:intergenic | 30.0% | |
| GAAATGCATAAACAACATGA+AGG | - | chr1.3:16251028-16251047 | MS.gene63008:intron | 30.0% | |
| GATGAAAAAAGGGATGAAAA+AGG | + | chr1.3:16251478-16251497 | None:intergenic | 30.0% | |
| GGTTAAATATGTTAGACATC+TGG | - | chr1.3:16251809-16251828 | MS.gene63008:intron | 30.0% | |
| GTGCTTGTTTAAATTCATTG+TGG | - | chr1.3:16252588-16252607 | MS.gene63008:intron | 30.0% | |
| GTTAAACTTAATTTACACCC+TGG | - | chr1.3:16250833-16250852 | MS.gene63008:CDS | 30.0% | |
| TAAAAACATCGAGATAGGAA+AGG | - | chr1.3:16252801-16252820 | MS.gene63008:intron | 30.0% | |
| TAATTGCAACACCGTAATAT+TGG | - | chr1.3:16251784-16251803 | MS.gene63008:intron | 30.0% | |
| TAGACAAAATAAGTTTGTGG+TGG | + | chr1.3:16251547-16251566 | None:intergenic | 30.0% | |
| TATACAAACAAGAGTGGAAA+AGG | + | chr1.3:16249918-16249937 | None:intergenic | 30.0% | |
| TCAAATAGTGTGCAAGTAAA+AGG | + | chr1.3:16251185-16251204 | None:intergenic | 30.0% | |
| TGAAAAAAGGGATGAAAAAG+GGG | + | chr1.3:16251476-16251495 | None:intergenic | 30.0% | |
| TGGAAGATGAATTCCATATT+TGG | + | chr1.3:16253510-16253529 | None:intergenic | 30.0% | |
| TTAATACTCAGGAATTAGGA+TGG | - | chr1.3:16253304-16253323 | MS.gene63008:intron | 30.0% | |
| TTCCAACTGTAAAAATGAAG+AGG | - | chr1.3:16253099-16253118 | MS.gene63008:intron | 30.0% | |
| TTCCTTATGGAATTCATCAT+AGG | - | chr1.3:16252482-16252501 | MS.gene63008:intron | 30.0% | |
| TTTGCTTTGTAACTTAGCAA+TGG | - | chr1.3:16252634-16252653 | MS.gene63008:intron | 30.0% | |
| ! | ACTTTTTATGCAATATGTCC+AGG | + | chr1.3:16250854-16250873 | None:intergenic | 30.0% |
| ! | ATCTGGTTAACTCTAGAAAA+AGG | - | chr1.3:16251826-16251845 | MS.gene63008:intron | 30.0% |
| ! | CTTTCTAAAAACATCGAGAT+AGG | - | chr1.3:16252796-16252815 | MS.gene63008:intron | 30.0% |
| ! | CTTTTTATGCAATATGTCCA+GGG | + | chr1.3:16250853-16250872 | None:intergenic | 30.0% |
| ! | TACAACAGAAAAAGAGGTAT+TGG | + | chr1.3:16252758-16252777 | None:intergenic | 30.0% |
| !! | AAACACAACAATTTGGGTTT+TGG | + | chr1.3:16249947-16249966 | None:intergenic | 30.0% |
| !! | AAAGAGGTATTGGATAGAAA+AGG | + | chr1.3:16252748-16252767 | None:intergenic | 30.0% |
| !! | ATCCTCTTCATTTTTACAGT+TGG | + | chr1.3:16253104-16253123 | None:intergenic | 30.0% |
| !!! | ACTGTAAGATTTTGAAACAG+TGG | - | chr1.3:16251725-16251744 | MS.gene63008:intron | 30.0% |
| !!! | AGAAGATAGTTTTGATAGCA+AGG | + | chr1.3:16251417-16251436 | None:intergenic | 30.0% |
| !!! | CTGTAAGATTTTGAAACAGT+GGG | - | chr1.3:16251726-16251745 | MS.gene63008:intron | 30.0% |
| AAATCACAACAGTAGCATGA+AGG | + | chr1.3:16250976-16250995 | None:intergenic | 35.0% | |
| AACAAAGAGCTCTACGTAAT+TGG | + | chr1.3:16250816-16250835 | None:intergenic | 35.0% | |
| AATAAAATTTGTCACGGGCA+CGG | + | chr1.3:16250235-16250254 | None:intergenic | 35.0% | |
| AGCTCTACGTAATTGGAATT+TGG | + | chr1.3:16250809-16250828 | None:intergenic | 35.0% | |
| ATAGCGTTCAAAGCAGAAAT+TGG | + | chr1.3:16250094-16250113 | None:intergenic | 35.0% | |
| ATATTTCACAAATGAGGAGG+AGG | + | chr1.3:16251248-16251267 | None:intergenic | 35.0% | |
| CAACATATGATATGTTGGGT+GGG | + | chr1.3:16250713-16250732 | None:intergenic | 35.0% | |
| CAAGGATACACTCTTAATTG+CGG | - | chr1.3:16251442-16251461 | MS.gene63008:intron | 35.0% | |
| CAGGAATCATCTATGTTGAT+CGG | + | chr1.3:16251143-16251162 | None:intergenic | 35.0% | |
| CCCTCAACATTTGATATATG+CGG | + | chr1.3:16250321-16250340 | None:intergenic | 35.0% | |
| CCGACGAATAAAATTTGTCA+CGG | + | chr1.3:16250241-16250260 | None:intergenic | 35.0% | |
| CCGCATATATCAAATGTTGA+GGG | - | chr1.3:16250318-16250337 | MS.gene63008:intron | 35.0% | |
| CGACGAATAAAATTTGTCAC+GGG | + | chr1.3:16250240-16250259 | None:intergenic | 35.0% | |
| CGTAGACTTAAAATACAAGC+AGG | + | chr1.3:16251162-16251181 | None:intergenic | 35.0% | |
| GAAAAAAGGGATGAAAAAGG+GGG | + | chr1.3:16251475-16251494 | None:intergenic | 35.0% | |
| GAGAATGAAGGATGACATAA+AGG | - | chr1.3:16250603-16250622 | MS.gene63008:intron | 35.0% | |
| GATCAACTCCTACATAATCA+AGG | - | chr1.3:16250679-16250698 | MS.gene63008:intron | 35.0% | |
| GCACCTATTATTTCCGAAAA+TGG | - | chr1.3:16250636-16250655 | MS.gene63008:intron | 35.0% | |
| GGAATTCATCATAGGATTAG+CGG | - | chr1.3:16252490-16252509 | MS.gene63008:intron | 35.0% | |
| GGAATTCATCTTCCATTAGA+AGG | - | chr1.3:16253515-16253534 | MS.gene63008:intron | 35.0% | |
| GGTGATATGACATGCTTTAA+AGG | - | chr1.3:16251573-16251592 | MS.gene63008:intron | 35.0% | |
| TCAACATATGATATGTTGGG+TGG | + | chr1.3:16250714-16250733 | None:intergenic | 35.0% | |
| TCATGGCCAATTCATAAATC+CGG | + | chr1.3:16252151-16252170 | None:intergenic | 35.0% | |
| ! | AAGCTAGCAAAGAGTATGAA+GGG | - | chr1.3:16251067-16251086 | MS.gene63008:intron | 35.0% |
| ! | ACTCTTTGCTAGCTTAGTTA+TGG | + | chr1.3:16251062-16251081 | None:intergenic | 35.0% |
| ! | CCGTGACAAATTTTATTCGT+CGG | - | chr1.3:16250238-16250257 | MS.gene63008:intron | 35.0% |
| ! | GCTCCATTTTCGGAAATAAT+AGG | + | chr1.3:16250642-16250661 | None:intergenic | 35.0% |
| ! | TAAGCTAGCAAAGAGTATGA+AGG | - | chr1.3:16251066-16251085 | MS.gene63008:intron | 35.0% |
| ! | TACACTCTTAATTGCGGTTT+TGG | - | chr1.3:16251448-16251467 | MS.gene63008:intron | 35.0% |
| ! | TCTGCTTTGAACGCTATTAT+CGG | - | chr1.3:16250097-16250116 | MS.gene63008:intron | 35.0% |
| ! | TTCAGAAGACACTTCTAAAG+AGG | + | chr1.3:16250535-16250554 | None:intergenic | 35.0% |
| !! | TGACTTCATTTTTGATTGGC+CGG | - | chr1.3:16252129-16252148 | MS.gene63008:intron | 35.0% |
| ATAAAATTTGTCACGGGCAC+GGG | + | chr1.3:16250234-16250253 | None:intergenic | 40.0% | |
| CAATGGATATCGTCTGAGTT+TGG | - | chr1.3:16252651-16252670 | MS.gene63008:intron | 40.0% | |
| CATGAGAAAGGTGATGAATG+AGG | + | chr1.3:16253659-16253678 | None:intergenic | 40.0% | |
| CCAGGGATGGCAAAAAAAAA+CGG | + | chr1.3:16250276-16250295 | None:intergenic | 40.0% | |
| CTCTTCCACAATCAACTCAT+GGG | + | chr1.3:16251009-16251028 | None:intergenic | 40.0% | |
| GCCGCATATATCAAATGTTG+AGG | - | chr1.3:16250317-16250336 | MS.gene63008:intron | 40.0% | |
| TAGAGCCTAAGCAGATCTAA+TGG | - | chr1.3:16252317-16252336 | MS.gene63008:intron | 40.0% | |
| TCTCTTCCACAATCAACTCA+TGG | + | chr1.3:16251010-16251029 | None:intergenic | 40.0% | |
| TGAACGCTATTATCGGGTAT+GGG | - | chr1.3:16250104-16250123 | MS.gene63008:intron | 40.0% | |
| TGCAACACCGTAATATTGGT+TGG | - | chr1.3:16251788-16251807 | MS.gene63008:intron | 40.0% | |
| TTAATGAAGAGGCAAGCGTA+AGG | + | chr1.3:16253017-16253036 | None:intergenic | 40.0% | |
| TTGAACGCTATTATCGGGTA+TGG | - | chr1.3:16250103-16250122 | MS.gene63008:intron | 40.0% | |
| TTGACAATGGCTTGAAGTTC+CGG | + | chr1.3:16249870-16249889 | None:intergenic | 40.0% | |
| TTGGTGTGCTAGATACAGAA+CGG | - | chr1.3:16252201-16252220 | MS.gene63008:intron | 40.0% | |
| ! | ACATGTTTCTGTTGCATCCA+TGG | - | chr1.3:16249890-16249909 | MS.gene63008:intron | 40.0% |
| ! | AGGAAGATCTGCTCCATTTT+CGG | + | chr1.3:16250652-16250671 | None:intergenic | 40.0% |
| ! | CGCAATTAAGAGTGTATCCT+TGG | + | chr1.3:16251444-16251463 | None:intergenic | 40.0% |
| ! | CTGCTTTGAACGCTATTATC+GGG | - | chr1.3:16250098-16250117 | MS.gene63008:intron | 40.0% |
| ! | GATTGGCCGGATTTATGAAT+TGG | - | chr1.3:16252142-16252161 | MS.gene63008:intron | 40.0% |
| ATCGTCTGAGTTTGGAGAGT+TGG | - | chr1.3:16252659-16252678 | MS.gene63008:intron | 45.0% | |
| ATGGAGCAGATCTTCCTGTT+TGG | - | chr1.3:16250655-16250674 | MS.gene63008:intron | 45.0% | |
| CAAAAAAAAACGGTGCACGC+TGG | + | chr1.3:16250266-16250285 | None:intergenic | 45.0% | |
| CACGTCCATTAGATCTGCTT+AGG | + | chr1.3:16252325-16252344 | None:intergenic | 45.0% | |
| CATCGAGATAGGAAAGGTTG+TGG | - | chr1.3:16252807-16252826 | MS.gene63008:intron | 45.0% | |
| GGTCGTGTTGAAGAGAATGA+AGG | - | chr1.3:16250591-16250610 | MS.gene63008:intron | 45.0% | |
| TAAAATTTGTCACGGGCACG+GGG | + | chr1.3:16250233-16250252 | None:intergenic | 45.0% | |
| TGTGCTAGATACAGAACGGA+TGG | - | chr1.3:16252205-16252224 | MS.gene63008:intron | 45.0% | |
| ! | ACTTTTCTTTGGACCAGGGA+TGG | + | chr1.3:16250289-16250308 | None:intergenic | 45.0% |
| ! | AGCAGATCTAATGGACGTGA+TGG | - | chr1.3:16252326-16252345 | MS.gene63008:intron | 45.0% |
| ! | CGCAACTTTTCTTTGGACCA+GGG | + | chr1.3:16250293-16250312 | None:intergenic | 45.0% |
| ! | GCAGATCTAATGGACGTGAT+GGG | - | chr1.3:16252327-16252346 | MS.gene63008:intron | 45.0% |
| ! | GTAGGAGTTGATCTCCAAAC+AGG | + | chr1.3:16250672-16250691 | None:intergenic | 45.0% |
| !! | AATGGACGTGATGGGTCAAA+AGG | - | chr1.3:16252335-16252354 | MS.gene63008:intron | 45.0% |
| !! | AGAGTCCCATGAGTTGATTG+TGG | - | chr1.3:16251001-16251020 | MS.gene63008:intron | 45.0% |
| !! | CAAGAGTGGAAAAGGTACCA+TGG | + | chr1.3:16249910-16249929 | None:intergenic | 45.0% |
| !!! | CCGTTTTTTTTTGCCATCCC+TGG | - | chr1.3:16250273-16250292 | MS.gene63008:intron | 45.0% |
| !! | AAAGAATTAAAATAAAAAAT+AGG | + | chr1.3:16251296-16251315 | None:intergenic | 5.0% |
| !! | AAATATAATTTATAATAACA+AGG | + | chr1.3:16252435-16252454 | None:intergenic | 5.0% |
| !!! | TATAAATTATATTTCTAATT+AGG | - | chr1.3:16252441-16252460 | MS.gene63008:intron | 5.0% |
| !!! | TATTTTTTATTTTAATTCTT+TGG | - | chr1.3:16251295-16251314 | MS.gene63008:intron | 5.0% |
| CTCAGGAATTAGGATGGCGT+TGG | - | chr1.3:16253310-16253329 | MS.gene63008:intron | 50.0% | |
| ! | GCGCAACTTTTCTTTGGACC+AGG | + | chr1.3:16250294-16250313 | None:intergenic | 50.0% |
| ! | TGGTGTACGGGTTACATCTC+CGG | - | chr1.3:16249848-16249867 | MS.gene63008:intron | 50.0% |
| !! | AGGATGGCGTTGGAGTGTTT+TGG | - | chr1.3:16253320-16253339 | MS.gene63008:intron | 50.0% |
| !! | GATGATGGTACTGACCAGCA+GGG | + | chr1.3:16253355-16253374 | None:intergenic | 50.0% |
| TTATCGGGTATGGGTACCCG+CGG | - | chr1.3:16250113-16250132 | MS.gene63008:intron | 55.0% | |
| TTTGCTGATACCCGTTCCCG+CGG | + | chr1.3:16250133-16250152 | None:intergenic | 55.0% | |
| TTTGGCAGTGATCTCCCTGC+TGG | - | chr1.3:16253338-16253357 | MS.gene63008:intron | 55.0% | |
| ! | GGCTGCGCGCAACTTTTCTT+TGG | + | chr1.3:16250300-16250319 | None:intergenic | 55.0% |
| !! | GGATGATGGTACTGACCAGC+AGG | + | chr1.3:16253356-16253375 | None:intergenic | 55.0% |
| TATCGGGTATGGGTACCCGC+GGG | - | chr1.3:16250114-16250133 | MS.gene63008:intron | 60.0% | |
| TTGCTGATACCCGTTCCCGC+GGG | + | chr1.3:16250132-16250151 | None:intergenic | 60.0% | |
| ! | GCACGGGGCTGGTAGCTAAA+CGG | + | chr1.3:16250218-16250237 | None:intergenic | 60.0% |
| ATTTGTCACGGGCACGGGGC+TGG | + | chr1.3:16250229-16250248 | None:intergenic | 65.0% | |
| GGTATGGGTACCCGCGGGAA+CGG | - | chr1.3:16250119-16250138 | MS.gene63008:intron | 65.0% | |
| GTATGGGTACCCGCGGGAAC+GGG | - | chr1.3:16250120-16250139 | MS.gene63008:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 16249847 | 16253696 | 16249847 | ID=MS.gene63008 |
| chr1.3 | mRNA | 16249847 | 16253696 | 16249847 | ID=MS.gene63008.t1;Parent=MS.gene63008 |
| chr1.3 | exon | 16253632 | 16253696 | 16253632 | ID=MS.gene63008.t1.exon1;Parent=MS.gene63008.t1 |
| chr1.3 | CDS | 16253632 | 16253696 | 16253632 | ID=cds.MS.gene63008.t1;Parent=MS.gene63008.t1 |
| chr1.3 | exon | 16250808 | 16250892 | 16250808 | ID=MS.gene63008.t1.exon2;Parent=MS.gene63008.t1 |
| chr1.3 | CDS | 16250808 | 16250892 | 16250808 | ID=cds.MS.gene63008.t1;Parent=MS.gene63008.t1 |
| chr1.3 | exon | 16250184 | 16250228 | 16250184 | ID=MS.gene63008.t1.exon3;Parent=MS.gene63008.t1 |
| chr1.3 | CDS | 16250184 | 16250228 | 16250184 | ID=cds.MS.gene63008.t1;Parent=MS.gene63008.t1 |
| chr1.3 | exon | 16249847 | 16249858 | 16249847 | ID=MS.gene63008.t1.exon4;Parent=MS.gene63008.t1 |
| chr1.3 | CDS | 16249847 | 16249858 | 16249847 | ID=cds.MS.gene63008.t1;Parent=MS.gene63008.t1 |
| Gene Sequence |
| Protein sequence |
