AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63396

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63396.t1 MTR_2g075830 95.765 307 13 0 1 307 35 341 0.0 597
MS.gene63396.t1 MTR_4g107930 77.742 310 66 2 1 307 36 345 0.0 507
MS.gene63396.t1 MTR_4g079470 77.814 311 63 4 1 307 37 345 0.0 504
MS.gene63396.t1 MTR_4g079770 77.814 311 63 4 1 307 37 345 0.0 503
MS.gene63396.t1 MTR_5g022560 76.452 310 70 2 1 307 35 344 0.0 502
MS.gene63396.t1 MTR_4g047610 76.849 311 67 3 1 307 34 343 1.25e-180 502
MS.gene63396.t1 MTR_4g079800 76.206 311 68 4 1 307 37 345 9.01e-179 497
MS.gene63396.t1 MTR_4g080700 64.821 307 106 2 1 307 36 340 9.19e-154 434
MS.gene63396.t1 MTR_4g080730 63.844 307 109 2 1 307 36 340 1.80e-150 426
MS.gene63396.t1 MTR_4g080360 57.929 309 123 3 4 307 36 342 7.58e-133 381
MS.gene63396.t1 MTR_2g083930 54.140 314 133 3 1 305 31 342 1.81e-125 362
MS.gene63396.t1 MTR_7g078600 55.882 306 127 4 1 305 38 336 2.71e-123 357
MS.gene63396.t1 MTR_4g104370 55.949 311 127 6 1 305 36 342 4.35e-122 354
MS.gene63396.t1 MTR_1g107550 56.270 311 128 5 1 305 46 354 3.46e-121 356
MS.gene63396.t1 MTR_3g075390 55.305 311 130 6 1 305 36 343 3.99e-121 352
MS.gene63396.t1 MTR_7g079230 54.754 305 133 3 1 305 35 334 1.57e-119 347
MS.gene63396.t1 MTR_4g079440 55.082 305 134 3 1 305 42 343 1.80e-118 344
MS.gene63396.t1 MTR_3g116080 55.128 312 127 6 1 306 43 347 2.39e-117 342
MS.gene63396.t1 MTR_2g090890 52.117 307 141 4 1 306 35 336 1.17e-114 334
MS.gene63396.t1 MTR_1g018840 53.526 312 128 6 5 305 55 360 2.65e-114 338
MS.gene63396.t1 MTR_1g018840 53.526 312 128 6 5 305 55 360 5.04e-114 338
MS.gene63396.t1 MTR_4g094918 51.290 310 140 6 5 306 35 341 1.58e-110 325
MS.gene63396.t1 MTR_3g102220 52.229 314 131 9 5 305 53 360 2.24e-108 323
MS.gene63396.t1 MTR_3g112430 51.125 311 136 4 6 306 37 341 1.33e-107 320
MS.gene63396.t1 MTR_2g015850 51.903 289 131 5 21 305 78 362 8.04e-94 282
MS.gene63396.t1 MTR_2g016270 45.631 309 146 7 3 306 49 340 1.53e-86 267
MS.gene63396.t1 MTR_2g016180 45.223 314 155 7 3 306 49 355 2.17e-86 267
MS.gene63396.t1 MTR_2g067900 46.835 316 146 10 4 304 15 323 6.29e-84 256
MS.gene63396.t1 MTR_2g064475 41.379 348 148 14 4 306 15 351 1.41e-75 235
MS.gene63396.t1 MTR_2g067560 45.031 322 141 14 4 301 15 324 4.73e-74 244
MS.gene63396.t1 MTR_7g078630 45.818 275 110 5 3 266 704 950 1.25e-71 238
MS.gene63396.t1 MTR_2g015920 41.346 312 155 12 3 298 51 350 6.83e-71 224
MS.gene63396.t1 MTR_4g125300 42.244 303 157 9 11 306 57 348 2.69e-68 216
MS.gene63396.t1 MTR_4g065077 39.185 319 172 9 1 306 47 356 3.32e-66 211
MS.gene63396.t1 MTR_2g066980 36.728 324 144 10 5 306 34 318 2.81e-65 208
MS.gene63396.t1 MTR_4g071060 39.735 302 161 6 11 298 54 348 3.82e-65 209
MS.gene63396.t1 MTR_2g015930 39.297 313 161 13 3 298 50 350 2.99e-64 206
MS.gene63396.t1 MTR_1g023810 44.828 232 119 6 76 304 36 261 6.97e-63 200
MS.gene63396.t1 MTR_1g023210 39.088 307 151 10 14 298 60 352 3.32e-62 201
MS.gene63396.t1 MTR_8g086470 37.342 316 166 9 1 306 63 356 2.14e-59 194
MS.gene63396.t1 MTR_1g094135 35.647 317 171 10 3 298 54 358 1.52e-52 177
MS.gene63396.t1 MTR_4g072790 36.364 297 142 11 11 298 54 312 5.04e-47 161
MS.gene63396.t1 MTR_4g072340 35.880 301 142 11 11 298 54 316 2.17e-45 157
MS.gene63396.t1 MTR_4g073660 35.880 301 142 11 11 298 53 315 2.71e-45 156
MS.gene63396.t1 MTR_7g078580 63.265 98 35 1 208 305 4 100 7.21e-42 141
MS.gene63396.t1 MTR_2g015840 51.163 129 53 2 3 124 31 156 2.75e-39 139
MS.gene63396.t1 MTR_2g015840 55.357 112 49 1 195 306 161 271 1.98e-36 132
MS.gene63396.t1 MTR_7g079130 63.736 91 33 0 215 305 6 96 1.00e-37 129
MS.gene63396.t1 MTR_1g025450 38.624 189 89 7 76 259 42 208 1.05e-33 129
MS.gene63396.t1 MTR_7g078310 44.286 140 71 3 45 182 113 247 6.59e-31 117
MS.gene63396.t1 MTR_2g016380 43.590 117 61 3 193 306 21 135 1.64e-26 105
MS.gene63396.t1 MTR_3g029560 29.108 213 121 6 100 306 49 237 1.49e-22 94.4
MS.gene63396.t1 MTR_8g087510 43.511 131 67 5 130 258 23 148 2.00e-21 89.7
MS.gene63396.t1 MTR_7g111060 29.333 225 131 6 95 298 113 330 2.74e-21 92.8
MS.gene63396.t1 MTR_7g111050 30.508 236 136 8 84 298 99 327 1.39e-20 90.9
MS.gene63396.t1 MTR_7g079260 51.389 72 19 1 232 303 7 62 4.13e-18 78.6
MS.gene63396.t1 MTR_2g047960 47.059 85 44 1 98 182 7 90 5.14e-17 75.5
MS.gene63396.t1 MTR_7g111050 28.641 206 123 7 84 268 94 296 6.20e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63396.t1 AT5G45890 54.777 314 132 4 1 306 34 345 1.63e-126 365
MS.gene63396.t1 AT5G50260 55.911 313 125 5 1 305 34 341 4.52e-123 357
MS.gene63396.t1 AT3G48340 55.663 309 125 5 5 305 38 342 7.45e-120 348
MS.gene63396.t1 AT4G35350 53.698 311 134 5 1 306 47 352 2.62e-116 339
MS.gene63396.t1 AT2G34080 51.274 314 143 4 1 307 35 345 3.04e-115 336
MS.gene63396.t1 AT2G27420 51.735 317 140 3 3 307 33 348 2.47e-114 334
MS.gene63396.t1 AT3G48350 53.674 313 135 6 1 306 34 343 3.44e-114 334
MS.gene63396.t1 AT3G19390 52.751 309 138 5 1 306 42 345 5.74e-114 337
MS.gene63396.t1 AT3G49340 50.949 316 137 4 3 307 33 341 3.76e-113 331
MS.gene63396.t1 AT1G06260 54.516 310 129 6 1 305 39 341 8.91e-113 330
MS.gene63396.t1 AT3G19400 51.307 306 144 4 5 306 44 348 2.14e-112 330
MS.gene63396.t1 AT1G47128 52.597 308 133 8 5 305 50 351 5.58e-112 332
MS.gene63396.t1 AT5G43060 54.045 309 128 8 5 305 50 352 1.14e-111 331
MS.gene63396.t1 AT4G36880 53.846 312 129 7 7 305 51 360 3.67e-111 327
MS.gene63396.t1 AT1G20850 52.258 310 141 4 1 306 47 353 1.58e-110 325
MS.gene63396.t1 AT1G29090 50.476 315 142 6 3 307 45 355 4.79e-109 321
MS.gene63396.t1 AT1G29080 50.159 315 138 8 5 307 39 346 9.15e-107 315
MS.gene63396.t1 AT4G11310 50.485 309 137 7 6 305 50 351 4.79e-105 311
MS.gene63396.t1 AT1G09850 50.654 306 145 4 3 305 30 332 9.43e-105 313
MS.gene63396.t1 AT4G23520 49.351 308 141 9 6 305 48 348 1.10e-102 305
MS.gene63396.t1 AT4G11320 48.693 306 147 5 6 305 57 358 2.02e-102 305
MS.gene63396.t1 AT4G11320 48.693 306 147 5 6 305 57 358 2.02e-102 305
MS.gene63396.t1 AT3G43960 46.602 309 153 7 5 305 41 345 2.29e-92 279
MS.gene63396.t1 AT1G29110 43.730 311 151 6 5 306 38 333 2.69e-86 262
MS.gene63396.t1 AT4G35350 52.245 245 107 5 1 240 47 286 7.52e-84 254
MS.gene63396.t1 AT3G48350 51.417 247 110 6 1 240 34 277 1.23e-77 239
MS.gene63396.t1 AT3G19400 48.750 240 119 3 5 240 44 283 1.85e-77 238
MS.gene63396.t1 AT3G45310 42.810 306 153 10 11 307 65 357 6.51e-71 224
MS.gene63396.t1 AT5G60360 43.279 305 151 10 11 306 65 356 8.71e-71 223
MS.gene63396.t1 AT3G45310 42.157 306 154 10 11 307 65 356 1.94e-68 217
MS.gene63396.t1 AT5G60360 42.951 305 151 11 11 306 65 355 3.66e-68 216
MS.gene63396.t1 AT5G60360 42.193 301 156 9 11 302 65 356 9.18e-68 216
MS.gene63396.t1 AT2G21430 39.216 306 158 8 11 298 54 349 2.49e-63 204
MS.gene63396.t1 AT4G39090 39.542 306 157 8 11 298 57 352 3.77e-63 204
MS.gene63396.t1 AT4G16190 39.088 307 159 8 11 298 61 358 2.48e-61 199
MS.gene63396.t1 AT3G54940 36.392 316 169 9 4 298 50 354 1.48e-54 182
MS.gene63396.t1 AT3G54940 36.000 225 132 4 8 222 54 276 4.41e-38 136
MS.gene63396.t1 AT1G02305 29.110 292 169 10 36 298 51 333 2.35e-23 99.0
MS.gene63396.t1 AT4G01610 27.797 295 177 10 36 302 48 334 4.37e-23 98.2
MS.gene63396.t1 AT4G01610 27.458 295 178 10 36 302 48 334 7.56e-22 94.7
MS.gene63396.t1 AT1G02300 30.000 210 123 7 108 298 146 350 9.52e-19 85.9
MS.gene63396.t1 AT2G22160 40.659 91 51 2 20 108 9 98 5.12e-15 70.1

Find 77 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATAAATCTTATAAATT+AGG 0.157228 2.4:-21584939 MS.gene63396:CDS
TACAAAAGTGGTGTCTTTAC+TGG 0.255221 2.4:-21584270 MS.gene63396:CDS
AGCTCTGCTGCTACCATTTC+CGG 0.255468 2.4:-21584396 MS.gene63396:CDS
TAAGTTAAGTACAGGAAATT+TGG 0.266307 2.4:-21584595 MS.gene63396:CDS
CGTTGCAAATCAACCGGTTT+CGG 0.305328 2.4:-21584328 MS.gene63396:CDS
ACAACATGGCAAAGTCTATA+AGG 0.357194 2.4:-21585036 MS.gene63396:CDS
CAATGCCTGCTCATCATTTG+TGG 0.376785 2.4:+21584359 None:intergenic
GGTGTAGCTGTTGTGGGTTA+TGG 0.386579 2.4:-21584222 MS.gene63396:CDS
AATTATGCAGTTGGATAAGA+TGG 0.402123 2.4:+21584069 None:intergenic
AATATTTGTAGGATGTTGTT+GGG 0.406693 2.4:-21584652 MS.gene63396:intron
ATTGAATCTTTCAACAATGT+TGG 0.411583 2.4:-21584960 MS.gene63396:CDS
ATTGGTTGGTGAAGAATTCA+TGG 0.413527 2.4:-21584176 MS.gene63396:CDS
AGGTTGTGAAGGTGGTCTTA+TGG 0.416045 2.4:-21584520 MS.gene63396:CDS
TACCCTTATCAAGGTGTTGA+TGG 0.417342 2.4:-21584444 MS.gene63396:CDS
GCATCAATGGCTACCGAAAC+CGG 0.418768 2.4:+21584315 None:intergenic
TAATATTTGTAGGATGTTGT+TGG 0.420839 2.4:-21584653 MS.gene63396:intron
GACATTCTCGTACCCGGAAA+TGG 0.421059 2.4:+21584383 None:intergenic
GAATTCATGGGGAACTCAAT+GGG 0.434741 2.4:-21584163 MS.gene63396:CDS
GGGGTGAAGAAGGGTACATT+AGG 0.434781 2.4:-21584143 MS.gene63396:CDS
GCTCTGCTGCTACCATTTCC+GGG 0.441657 2.4:-21584395 MS.gene63396:CDS
TTCCATCAACACCTTGATAA+GGG 0.450919 2.4:+21584442 None:intergenic
GCTGTTGTGGGTTATGGTGT+TGG 0.453735 2.4:-21584216 MS.gene63396:CDS
AATGCCTGCTCATCATTTGT+GGG 0.454729 2.4:+21584360 None:intergenic
AAAAGCCGTTGCAAATCAAC+CGG 0.459968 2.4:-21584334 MS.gene63396:CDS
GATCATGGTGTAGCTGTTGT+GGG 0.460675 2.4:-21584228 MS.gene63396:CDS
GTCAGAGCCACTAGCATCAA+TGG 0.460761 2.4:+21584302 None:intergenic
GGAACTCAATGGGGTGAAGA+AGG 0.462980 2.4:-21584153 MS.gene63396:CDS
GTTCCATCAACACCTTGATA+AGG 0.464383 2.4:+21584441 None:intergenic
TGCTCATGCCTCTCATACAT+AGG 0.466056 2.4:+21585068 None:intergenic
AAATCTTATAATTATGCAGT+TGG 0.468251 2.4:+21584060 None:intergenic
GCAGCTAGAAACAAATTCAA+TGG 0.472406 2.4:-21584876 MS.gene63396:CDS
ACTTAACTTATGAATTCCTT+CGG 0.480238 2.4:+21584608 None:intergenic
GGATCATGGTGTAGCTGTTG+TGG 0.482554 2.4:-21584229 MS.gene63396:CDS
CATTAGGATGCAAAGGGGTG+TGG 0.492848 2.4:-21584127 MS.gene63396:CDS
AGAATTCATGGGGAACTCAA+TGG 0.494609 2.4:-21584164 MS.gene63396:CDS
TACCATCTGCAGTGGATTGG+AGG 0.508009 2.4:-21584800 MS.gene63396:CDS
TTCTAGCTGCTATAAACTCA+TGG 0.510437 2.4:+21584889 None:intergenic
GGAATTCATAAGTTAAGTAC+AGG 0.513328 2.4:-21584603 MS.gene63396:CDS
ACATGCAATAAAACTGAAGT+AGG 0.516912 2.4:-21584420 MS.gene63396:CDS
ATCTGCAGTGGATTGGAGGC+AGG 0.519791 2.4:-21584796 MS.gene63396:CDS
TGTCCCCACAAATGATGAGC+AGG 0.522234 2.4:-21584364 MS.gene63396:CDS
AGGGTACATTAGGATGCAAA+GGG 0.524704 2.4:-21584133 MS.gene63396:CDS
TGTGGGGACATTCTCGTACC+CGG 0.543427 2.4:+21584377 None:intergenic
AAATTCAATGGATATTTGCA+TGG 0.546885 2.4:-21584864 MS.gene63396:CDS
AAGGGTACATTAGGATGCAA+AGG 0.551462 2.4:-21584134 MS.gene63396:CDS
TAATGGACTTAGCACTGAAG+TGG 0.556033 2.4:-21584469 MS.gene63396:CDS
TTGGTTGGTGAAGAATTCAT+GGG 0.557529 2.4:-21584175 MS.gene63396:CDS
CGAAACCGGTTGATTTGCAA+CGG 0.558104 2.4:+21584329 None:intergenic
TCGGCTGTTGCATCAACCGA+AGG 0.561296 2.4:-21584624 MS.gene63396:CDS
TGTGGAACTGAGTTGGATCA+TGG 0.564256 2.4:-21584243 MS.gene63396:CDS
GAACTCAATGGGGTGAAGAA+GGG 0.565034 2.4:-21584152 MS.gene63396:CDS
GAAGTGGAATACCCTTATCA+AGG 0.568429 2.4:-21584453 MS.gene63396:CDS
GTGAAGATGAGACTGAGTAT+TGG 0.569553 2.4:-21584194 MS.gene63396:CDS
ATGTACCATCTGCAGTGGAT+TGG 0.570020 2.4:-21584803 MS.gene63396:CDS
TCGGTAGCCATTGATGCTAG+TGG 0.574292 2.4:-21584309 MS.gene63396:CDS
TGCCTCCAATCCACTGCAGA+TGG 0.579586 2.4:+21584798 None:intergenic
TAAGACCACCTTCACAACCT+TGG 0.583050 2.4:+21584523 None:intergenic
TCTATAAGGATGCACATGAA+AGG 0.584380 2.4:-21585022 MS.gene63396:CDS
TGGTTCATGTGGAACTGAGT+TGG 0.588339 2.4:-21584250 MS.gene63396:CDS
AGGGGTGTGGATGCTTCAGA+AGG 0.605030 2.4:-21584114 MS.gene63396:CDS
TGTATGAGAGGCATGAGCAA+TGG 0.614507 2.4:-21585064 MS.gene63396:CDS
GCAGTGGATTGGAGGCAGGA+AGG 0.619784 2.4:-21584792 MS.gene63396:CDS
AGATGAGACTGAGTATTGGT+TGG 0.624949 2.4:-21584190 MS.gene63396:CDS
AAAATGACCCTATGTATGAG+AGG 0.630864 2.4:-21585076 None:intergenic
GAAGACCAAGGTTGTGAAGG+TGG 0.632713 2.4:-21584528 MS.gene63396:CDS
GGTGTCTTTACTGGTTCATG+TGG 0.637602 2.4:-21584261 MS.gene63396:CDS
GGTGAAGACCAAGGTTGTGA+AGG 0.642150 2.4:-21584531 MS.gene63396:CDS
GATGCTTCAGAAGGAATATG+TGG 0.650231 2.4:-21584105 MS.gene63396:CDS
CTTGTTGATTGTGACACAAG+TGG 0.664457 2.4:-21584552 MS.gene63396:CDS
AATTCATGGGGAACTCAATG+GGG 0.670782 2.4:-21584162 MS.gene63396:CDS
TAGTGATGTACCATCTGCAG+TGG 0.678103 2.4:-21584808 MS.gene63396:CDS
TGAGAGGCATGAGCAATGGA+TGG 0.686001 2.4:-21585060 MS.gene63396:CDS
ATGCCTGCTCATCATTTGTG+GGG 0.688383 2.4:+21584361 None:intergenic
TGGTTGGTGAAGAATTCATG+GGG 0.692894 2.4:-21584174 MS.gene63396:CDS
GAGCAATGGATGGTACAACA+TGG 0.707448 2.4:-21585050 MS.gene63396:CDS
GACACAAGTGGTGAAGACCA+AGG 0.761833 2.4:-21584540 MS.gene63396:CDS
GGGTACATTAGGATGCAAAG+GGG 0.770853 2.4:-21584132 MS.gene63396:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATTCATTATAAAAAATAA+TGG - chr2.4:21584650-21584669 MS.gene63396:intron 10.0%
!! GGAAATAAATCTTATAAATT+AGG - chr2.4:21584197-21584216 MS.gene63396:CDS 15.0%
!!! AACTAAATTTTACTATTACT+AGG + chr2.4:21584457-21584476 None:intergenic 15.0%
!! AGTTGTGATTTAATATTTGT+AGG - chr2.4:21584473-21584492 MS.gene63396:CDS 20.0%
!! TTTATATAACAATCAAGATG+TGG - chr2.4:21584417-21584436 MS.gene63396:CDS 20.0%
! AAATTCAATGGATATTTGCA+TGG - chr2.4:21584272-21584291 MS.gene63396:CDS 25.0%
! AATATTTGTAGGATGTTGTT+GGG - chr2.4:21584484-21584503 MS.gene63396:CDS 25.0%
! ACTTAACTTATGAATTCCTT+CGG + chr2.4:21584531-21584550 None:intergenic 25.0%
! ATTGAATCTTTCAACAATGT+TGG - chr2.4:21584176-21584195 MS.gene63396:CDS 25.0%
! TAAGTTAAGTACAGGAAATT+TGG - chr2.4:21584541-21584560 MS.gene63396:CDS 25.0%
! TAATATTTGTAGGATGTTGT+TGG - chr2.4:21584483-21584502 MS.gene63396:CDS 25.0%
!! GACTTTCAATTTTACAAAAG+TGG - chr2.4:21584854-21584873 MS.gene63396:CDS 25.0%
ACATGCAATAAAACTGAAGT+AGG - chr2.4:21584716-21584735 MS.gene63396:intron 30.0%
GGAATTCATAAGTTAAGTAC+AGG - chr2.4:21584533-21584552 MS.gene63396:CDS 30.0%
ACAACATGGCAAAGTCTATA+AGG - chr2.4:21584100-21584119 MS.gene63396:CDS 35.0%
GCAGCTAGAAACAAATTCAA+TGG - chr2.4:21584260-21584279 MS.gene63396:CDS 35.0%
GTGAAAAATCAAGGTCAATG+TGG - chr2.4:21584380-21584399 MS.gene63396:CDS 35.0%
TACAAAAGTGGTGTCTTTAC+TGG - chr2.4:21584866-21584885 MS.gene63396:CDS 35.0%
TCTATAAGGATGCACATGAA+AGG - chr2.4:21584114-21584133 MS.gene63396:CDS 35.0%
TTCCATCAACACCTTGATAA+GGG + chr2.4:21584697-21584716 None:intergenic 35.0%
! CATGAAAGGCAAAAACGTTT+TGG - chr2.4:21584128-21584147 MS.gene63396:CDS 35.0%
! CATTGACCTTGATTTTTCAC+AGG + chr2.4:21584380-21584399 None:intergenic 35.0%
! TTCTAGCTGCTATAAACTCA+TGG + chr2.4:21584250-21584269 None:intergenic 35.0%
!! ATTGGTTGGTGAAGAATTCA+TGG - chr2.4:21584960-21584979 MS.gene63396:CDS 35.0%
!! TTGGTTGGTGAAGAATTCAT+GGG - chr2.4:21584961-21584980 MS.gene63396:CDS 35.0%
AAAAGCCGTTGCAAATCAAC+CGG - chr2.4:21584802-21584821 MS.gene63396:CDS 40.0%
AATGCCTGCTCATCATTTGT+GGG + chr2.4:21584779-21584798 None:intergenic 40.0%
AATTCATGGGGAACTCAATG+GGG - chr2.4:21584974-21584993 MS.gene63396:CDS 40.0%
AGAATTCATGGGGAACTCAA+TGG - chr2.4:21584972-21584991 MS.gene63396:CDS 40.0%
AGGGTACATTAGGATGCAAA+GGG - chr2.4:21585003-21585022 MS.gene63396:CDS 40.0%
GAAGTGGAATACCCTTATCA+AGG - chr2.4:21584683-21584702 MS.gene63396:intron 40.0%
GAATTCATGGGGAACTCAAT+GGG - chr2.4:21584973-21584992 MS.gene63396:CDS 40.0%
GATGCTTCAGAAGGAATATG+TGG - chr2.4:21585031-21585050 MS.gene63396:CDS 40.0%
GTCACACCTGTGAAAAATCA+AGG - chr2.4:21584371-21584390 MS.gene63396:CDS 40.0%
GTGAAGATGAGACTGAGTAT+TGG - chr2.4:21584942-21584961 MS.gene63396:CDS 40.0%
GTTCCATCAACACCTTGATA+AGG + chr2.4:21584698-21584717 None:intergenic 40.0%
! AAGGGTACATTAGGATGCAA+AGG - chr2.4:21585002-21585021 MS.gene63396:CDS 40.0%
! CTTGTTGATTGTGACACAAG+TGG - chr2.4:21584584-21584603 MS.gene63396:CDS 40.0%
!! AGATGAGACTGAGTATTGGT+TGG - chr2.4:21584946-21584965 MS.gene63396:CDS 40.0%
!! TAATGGACTTAGCACTGAAG+TGG - chr2.4:21584667-21584686 MS.gene63396:intron 40.0%
!! TACCCTTATCAAGGTGTTGA+TGG - chr2.4:21584692-21584711 MS.gene63396:intron 40.0%
!! TGGTTGGTGAAGAATTCATG+GGG - chr2.4:21584962-21584981 MS.gene63396:CDS 40.0%
ATGCCTGCTCATCATTTGTG+GGG + chr2.4:21584778-21584797 None:intergenic 45.0%
ATGTACCATCTGCAGTGGAT+TGG - chr2.4:21584333-21584352 MS.gene63396:CDS 45.0%
CAATGCCTGCTCATCATTTG+TGG + chr2.4:21584780-21584799 None:intergenic 45.0%
GAACTCAATGGGGTGAAGAA+GGG - chr2.4:21584984-21585003 MS.gene63396:CDS 45.0%
GAGCAATGGATGGTACAACA+TGG - chr2.4:21584086-21584105 MS.gene63396:CDS 45.0%
GATCATGGTGTAGCTGTTGT+GGG - chr2.4:21584908-21584927 MS.gene63396:CDS 45.0%
GGGTACATTAGGATGCAAAG+GGG - chr2.4:21585004-21585023 MS.gene63396:CDS 45.0%
TAAGACCACCTTCACAACCT+TGG + chr2.4:21584616-21584635 None:intergenic 45.0%
TAGTGATGTACCATCTGCAG+TGG - chr2.4:21584328-21584347 MS.gene63396:CDS 45.0%
TGGTTCATGTGGAACTGAGT+TGG - chr2.4:21584886-21584905 MS.gene63396:CDS 45.0%
! AGGATGTTGTTGGGCGTTTT+CGG - chr2.4:21584493-21584512 MS.gene63396:CDS 45.0%
! AGGTTGTGAAGGTGGTCTTA+TGG - chr2.4:21584616-21584635 MS.gene63396:CDS 45.0%
! CGTTGCAAATCAACCGGTTT+CGG - chr2.4:21584808-21584827 MS.gene63396:CDS 45.0%
! TGTATGAGAGGCATGAGCAA+TGG - chr2.4:21584072-21584091 MS.gene63396:CDS 45.0%
! TGTGGAACTGAGTTGGATCA+TGG - chr2.4:21584893-21584912 MS.gene63396:CDS 45.0%
!! CGAAACCGGTTGATTTGCAA+CGG + chr2.4:21584810-21584829 None:intergenic 45.0%
!! GGTGTCTTTACTGGTTCATG+TGG - chr2.4:21584875-21584894 MS.gene63396:CDS 45.0%
AGCTCTGCTGCTACCATTTC+CGG - chr2.4:21584740-21584759 MS.gene63396:intron 50.0%
CATTAGGATGCAAAGGGGTG+TGG - chr2.4:21585009-21585028 MS.gene63396:CDS 50.0%
GAAGACCAAGGTTGTGAAGG+TGG - chr2.4:21584608-21584627 MS.gene63396:CDS 50.0%
GACACAAGTGGTGAAGACCA+AGG - chr2.4:21584596-21584615 MS.gene63396:CDS 50.0%
GACATTCTCGTACCCGGAAA+TGG + chr2.4:21584756-21584775 None:intergenic 50.0%
GCATCAATGGCTACCGAAAC+CGG + chr2.4:21584824-21584843 None:intergenic 50.0%
GGAACTCAATGGGGTGAAGA+AGG - chr2.4:21584983-21585002 MS.gene63396:CDS 50.0%
GGATCATGGTGTAGCTGTTG+TGG - chr2.4:21584907-21584926 MS.gene63396:CDS 50.0%
GGTGAAGACCAAGGTTGTGA+AGG - chr2.4:21584605-21584624 MS.gene63396:CDS 50.0%
GTCAGAGCCACTAGCATCAA+TGG + chr2.4:21584837-21584856 None:intergenic 50.0%
TCGGTAGCCATTGATGCTAG+TGG - chr2.4:21584827-21584846 MS.gene63396:CDS 50.0%
TGTCCCCACAAATGATGAGC+AGG - chr2.4:21584772-21584791 MS.gene63396:CDS 50.0%
! GCTGTTGTGGGTTATGGTGT+TGG - chr2.4:21584920-21584939 MS.gene63396:CDS 50.0%
! GGGGTGAAGAAGGGTACATT+AGG - chr2.4:21584993-21585012 MS.gene63396:CDS 50.0%
! GGTGTAGCTGTTGTGGGTTA+TGG - chr2.4:21584914-21584933 MS.gene63396:CDS 50.0%
! TGAGAGGCATGAGCAATGGA+TGG - chr2.4:21584076-21584095 MS.gene63396:CDS 50.0%
!! TACCATCTGCAGTGGATTGG+AGG - chr2.4:21584336-21584355 MS.gene63396:CDS 50.0%
GCTCTGCTGCTACCATTTCC+GGG - chr2.4:21584741-21584760 MS.gene63396:intron 55.0%
TCGGCTGTTGCATCAACCGA+AGG - chr2.4:21584512-21584531 MS.gene63396:CDS 55.0%
TGCCTCCAATCCACTGCAGA+TGG + chr2.4:21584341-21584360 None:intergenic 55.0%
TGTGGGGACATTCTCGTACC+CGG + chr2.4:21584762-21584781 None:intergenic 55.0%
! AGGGGTGTGGATGCTTCAGA+AGG - chr2.4:21585022-21585041 MS.gene63396:CDS 55.0%
!! ATCTGCAGTGGATTGGAGGC+AGG - chr2.4:21584340-21584359 MS.gene63396:CDS 55.0%
!! GCAGTGGATTGGAGGCAGGA+AGG - chr2.4:21584344-21584363 MS.gene63396:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 21584071 21585087 21584071 ID=MS.gene63396
chr2.4 mRNA 21584071 21585087 21584071 ID=MS.gene63396.t1;Parent=MS.gene63396
chr2.4 exon 21584757 21585087 21584757 ID=MS.gene63396.t1.exon1;Parent=MS.gene63396.t1
chr2.4 CDS 21584757 21585087 21584757 ID=cds.MS.gene63396.t1;Parent=MS.gene63396.t1
chr2.4 exon 21584071 21584663 21584071 ID=MS.gene63396.t1.exon2;Parent=MS.gene63396.t1
chr2.4 CDS 21584071 21584663 21584071 ID=cds.MS.gene63396.t1;Parent=MS.gene63396.t1
Gene Sequence

>MS.gene63396

ATGTATGAGAGGCATGAGCAATGGATGGTACAACATGGCAAAGTCTATAAGGATGCACATGAAAGGCAAAAACGTTTTGGAATATTCAAAGAAAATGTAAATTACATTGAATCTTTCAACAATGTTGGAAATAAATCTTATAAATTAGGACTTAATCATTTTGCTGATCTTAGCAACCATGAGTTTATAGCAGCTAGAAACAAATTCAATGGATATTTGCATGGCTCAAGCATAACTACTTTTAAGTACAAAAATGTTAGTGATGTACCATCTGCAGTGGATTGGAGGCAGGAAGGAGCAGTCACACCTGTGAAAAATCAAGGTCAATGTGGTAAGTGTTTATTTATTTATATAACAATCAAGATGTGGTTTCTTATTTTTAACCTAGTAATAGTAAAATTTAGTTGTGATTTAATATTTGTAGGATGTTGTTGGGCGTTTTCGGCTGTTGCATCAACCGAAGGAATTCATAAGTTAAGTACAGGAAATTTGGTCTCTTTATCAGAACAAGAACTTGTTGATTGTGACACAAGTGGTGAAGACCAAGGTTGTGAAGGTGGTCTTATGGATGATGCTTTCGAATTCATTATAAAAAATAATGGACTTAGCACTGAAGTGGAATACCCTTATCAAGGTGTTGATGGAACATGCAATAAAACTGAAGTAGGCAGCTCTGCTGCTACCATTTCCGGGTACGAGAATGTCCCCACAAATGATGAGCAGGCATTGCAAAAAGCCGTTGCAAATCAACCGGTTTCGGTAGCCATTGATGCTAGTGGCTCTGACTTTCAATTTTACAAAAGTGGTGTCTTTACTGGTTCATGTGGAACTGAGTTGGATCATGGTGTAGCTGTTGTGGGTTATGGTGTTGGTGAAGATGAGACTGAGTATTGGTTGGTGAAGAATTCATGGGGAACTCAATGGGGTGAAGAAGGGTACATTAGGATGCAAAGGGGTGTGGATGCTTCAGAAGGAATATGTGGTATTGCAATGCATCCATCTTATCCAACTGCATAA
Protein sequence

>MS.gene63396.t1

MYERHEQWMVQHGKVYKDAHERQKRFGIFKENVNYIESFNNVGNKSYKLGLNHFADLSNHEFIAARNKFNGYLHGSSITTFKYKNVSDVPSAVDWRQEGAVTPVKNQGQCGCCWAFSAVASTEGIHKLSTGNLVSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIIKNNGLSTEVEYPYQGVDGTCNKTEVGSSAATISGYENVPTNDEQALQKAVANQPVSVAIDASGSDFQFYKSGVFTGSCGTELDHGVAVVGYGVGEDETEYWLVKNSWGTQWGEEGYIRMQRGVDASEGICGIAMHPSYPTA