Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63957.t1 | RHN60052.1 | 96.5 | 228 | 3 | 2 | 1 | 228 | 12 | 234 | 8.30E-116 | 426.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63957.t1 | Q9STY0 | 72.6 | 226 | 60 | 1 | 3 | 228 | 4 | 227 | 5.1e-90 | 332.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63957.t1 | A0A396I343 | 96.5 | 228 | 3 | 2 | 1 | 228 | 12 | 234 | 6.0e-116 | 426.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049356 | MS.gene63957 | 0.822498 | 2.29E-53 | -1.69E-46 |
MS.gene049491 | MS.gene63957 | 0.808318 | 3.29E-50 | -1.69E-46 |
MS.gene049661 | MS.gene63957 | 0.840961 | 6.34E-58 | -1.69E-46 |
MS.gene049662 | MS.gene63957 | 0.850678 | 1.45E-60 | -1.69E-46 |
MS.gene049758 | MS.gene63957 | 0.828063 | 1.11E-54 | -1.69E-46 |
MS.gene050076 | MS.gene63957 | 0.816283 | 5.99E-52 | -1.69E-46 |
MS.gene050128 | MS.gene63957 | 0.81609 | 6.62E-52 | -1.69E-46 |
MS.gene050301 | MS.gene63957 | 0.858262 | 9.30E-63 | -1.69E-46 |
MS.gene050397 | MS.gene63957 | 0.843162 | 1.66E-58 | -1.69E-46 |
MS.gene050404 | MS.gene63957 | 0.802152 | 6.42E-49 | -1.69E-46 |
MS.gene050432 | MS.gene63957 | 0.826446 | 2.70E-54 | -1.69E-46 |
MS.gene050529 | MS.gene63957 | 0.853854 | 1.81E-61 | -1.69E-46 |
MS.gene05053 | MS.gene63957 | 0.812209 | 4.76E-51 | -1.69E-46 |
MS.gene050670 | MS.gene63957 | 0.821376 | 4.17E-53 | -1.69E-46 |
MS.gene05101 | MS.gene63957 | 0.815824 | 7.59E-52 | -1.69E-46 |
MS.gene05105 | MS.gene63957 | 0.849582 | 2.95E-60 | -1.69E-46 |
MS.gene051471 | MS.gene63957 | 0.823241 | 1.54E-53 | -1.69E-46 |
MS.gene051605 | MS.gene63957 | 0.807661 | 4.53E-50 | -1.69E-46 |
MS.gene052078 | MS.gene63957 | 0.806435 | 8.24E-50 | -1.69E-46 |
MS.gene052178 | MS.gene63957 | 0.81568 | 8.17E-52 | -1.69E-46 |
MS.gene052188 | MS.gene63957 | 0.866883 | 2.06E-65 | -1.69E-46 |
MS.gene052290 | MS.gene63957 | 0.804237 | 2.38E-49 | -1.69E-46 |
MS.gene052310 | MS.gene63957 | 0.860884 | 1.51E-63 | -1.69E-46 |
MS.gene052326 | MS.gene63957 | 0.802922 | 4.46E-49 | -1.69E-46 |
MS.gene052340 | MS.gene63957 | 0.8586 | 7.37E-63 | -1.69E-46 |
MS.gene052485 | MS.gene63957 | 0.802787 | 4.75E-49 | -1.69E-46 |
MS.gene053209 | MS.gene63957 | 0.850437 | 1.70E-60 | -1.69E-46 |
MS.gene053557 | MS.gene63957 | 0.855784 | 5.00E-62 | -1.69E-46 |
MS.gene053836 | MS.gene63957 | 0.829006 | 6.55E-55 | -1.69E-46 |
MS.gene055116 | MS.gene63957 | 0.86801 | 8.97E-66 | -1.69E-46 |
MS.gene055277 | MS.gene63957 | 0.863564 | 2.27E-64 | -1.69E-46 |
MS.gene055390 | MS.gene63957 | 0.822566 | 2.21E-53 | -1.69E-46 |
MS.gene055422 | MS.gene63957 | 0.832573 | 8.75E-56 | -1.69E-46 |
MS.gene055428 | MS.gene63957 | 0.811246 | 7.71E-51 | -1.69E-46 |
MS.gene056191 | MS.gene63957 | 0.824272 | 8.83E-54 | -1.69E-46 |
MS.gene056314 | MS.gene63957 | 0.828822 | 7.26E-55 | -1.69E-46 |
MS.gene056407 | MS.gene63957 | 0.821575 | 3.75E-53 | -1.69E-46 |
MS.gene056410 | MS.gene63957 | 0.825198 | 5.34E-54 | -1.69E-46 |
MS.gene056511 | MS.gene63957 | 0.823198 | 1.58E-53 | -1.69E-46 |
MS.gene056609 | MS.gene63957 | 0.837797 | 4.21E-57 | -1.69E-46 |
MS.gene056612 | MS.gene63957 | 0.844834 | 5.91E-59 | -1.69E-46 |
MS.gene056659 | MS.gene63957 | 0.845036 | 5.22E-59 | -1.69E-46 |
MS.gene05702 | MS.gene63957 | 0.824787 | 6.68E-54 | -1.69E-46 |
MS.gene057146 | MS.gene63957 | 0.800339 | 1.51E-48 | -1.69E-46 |
MS.gene057448 | MS.gene63957 | 0.821584 | 3.74E-53 | -1.69E-46 |
MS.gene057449 | MS.gene63957 | 0.81941 | 1.18E-52 | -1.69E-46 |
MS.gene057450 | MS.gene63957 | 0.824847 | 6.47E-54 | -1.69E-46 |
MS.gene057796 | MS.gene63957 | 0.807183 | 5.72E-50 | -1.69E-46 |
MS.gene058002 | MS.gene63957 | 0.838085 | 3.55E-57 | -1.69E-46 |
MS.gene058082 | MS.gene63957 | 0.832615 | 8.55E-56 | -1.69E-46 |
MS.gene05811 | MS.gene63957 | 0.838859 | 2.24E-57 | -1.69E-46 |
MS.gene058142 | MS.gene63957 | 0.801039 | 1.09E-48 | -1.69E-46 |
MS.gene058233 | MS.gene63957 | 0.817703 | 2.87E-52 | -1.69E-46 |
MS.gene058293 | MS.gene63957 | 0.809041 | 2.30E-50 | -1.69E-46 |
MS.gene058365 | MS.gene63957 | 0.830856 | 2.32E-55 | -1.69E-46 |
MS.gene058660 | MS.gene63957 | 0.851409 | 9.05E-61 | -1.69E-46 |
MS.gene058787 | MS.gene63957 | 0.806654 | 7.41E-50 | -1.69E-46 |
MS.gene058845 | MS.gene63957 | 0.833151 | 6.29E-56 | -1.69E-46 |
MS.gene058928 | MS.gene63957 | 0.834036 | 3.78E-56 | -1.69E-46 |
MS.gene05907 | MS.gene63957 | 0.841465 | 4.67E-58 | -1.69E-46 |
MS.gene059294 | MS.gene63957 | 0.815637 | 8.35E-52 | -1.69E-46 |
MS.gene059366 | MS.gene63957 | 0.827405 | 1.59E-54 | -1.69E-46 |
MS.gene059518 | MS.gene63957 | 0.816743 | 4.73E-52 | -1.69E-46 |
MS.gene059597 | MS.gene63957 | 0.832558 | 8.83E-56 | -1.69E-46 |
MS.gene05959 | MS.gene63957 | 0.811815 | 5.80E-51 | -1.69E-46 |
MS.gene059676 | MS.gene63957 | 0.844993 | 5.36E-59 | -1.69E-46 |
MS.gene059688 | MS.gene63957 | 0.868441 | 6.51E-66 | -1.69E-46 |
MS.gene059692 | MS.gene63957 | 0.880485 | 5.28E-70 | -1.69E-46 |
MS.gene059695 | MS.gene63957 | 0.877332 | 6.84E-69 | -1.69E-46 |
MS.gene059708 | MS.gene63957 | 0.828172 | 1.04E-54 | -1.69E-46 |
MS.gene059711 | MS.gene63957 | 0.800074 | 1.71E-48 | -1.69E-46 |
MS.gene05984 | MS.gene63957 | 0.846387 | 2.24E-59 | -1.69E-46 |
MS.gene059894 | MS.gene63957 | 0.847961 | 8.30E-60 | -1.69E-46 |
MS.gene059960 | MS.gene63957 | 0.808543 | 2.94E-50 | -1.69E-46 |
MS.gene059974 | MS.gene63957 | 0.805371 | 1.38E-49 | -1.69E-46 |
MS.gene06037 | MS.gene63957 | 0.819605 | 1.06E-52 | -1.69E-46 |
MS.gene060407 | MS.gene63957 | 0.803173 | 3.96E-49 | -1.69E-46 |
MS.gene060804 | MS.gene63957 | 0.831744 | 1.40E-55 | -1.69E-46 |
MS.gene060818 | MS.gene63957 | 0.808115 | 3.63E-50 | -1.69E-46 |
MS.gene061041 | MS.gene63957 | 0.824297 | 8.71E-54 | -1.69E-46 |
MS.gene061049 | MS.gene63957 | 0.865905 | 4.21E-65 | -1.69E-46 |
MS.gene061051 | MS.gene63957 | -0.845725 | 3.39E-59 | -1.69E-46 |
MS.gene061154 | MS.gene63957 | 0.810457 | 1.14E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63957.t1 | MTR_0004s0440 | 84.848 | 231 | 13 | 4 | 1 | 228 | 1 | 212 | 1.73e-132 | 372 |
MS.gene63957.t1 | MTR_1g021995 | 31.696 | 224 | 147 | 3 | 11 | 228 | 37 | 260 | 4.82e-31 | 115 |
MS.gene63957.t1 | MTR_7g076200 | 26.754 | 228 | 145 | 8 | 8 | 227 | 14 | 227 | 7.12e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63957.t1 | AT3G47430 | 72.566 | 226 | 60 | 1 | 3 | 228 | 4 | 227 | 1.57e-115 | 329 |
MS.gene63957.t1 | AT1G47750 | 31.624 | 234 | 150 | 6 | 3 | 228 | 16 | 247 | 4.34e-25 | 99.4 |
Find 40 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAGCAGTGCTTTCTAATTC+AGG | 0.262558 | 4.1:-56307188 | MS.gene63957:CDS |
TTGAACCTCTTGGATATATC+AGG | 0.291987 | 4.1:+56307323 | None:intergenic |
CACACGCCAGTTTGCAAGCT+TGG | 0.301187 | 4.1:+56307358 | None:intergenic |
CTGGTTCTACTCTCACTTTA+AGG | 0.302972 | 4.1:-56307214 | MS.gene63957:CDS |
ATGAGTTTCATATCTGCTTT+TGG | 0.310972 | 4.1:-56307086 | MS.gene63957:CDS |
TTGCAAGCTTGGAAACATAT+TGG | 0.323667 | 4.1:+56307369 | None:intergenic |
TTTCTTTGGTTATCAAGAAT+TGG | 0.329320 | 4.1:-56307137 | MS.gene63957:CDS |
ACTGTTTCTCTTGGTATTAG+TGG | 0.331245 | 4.1:-56306825 | MS.gene63957:CDS |
AGAACTGGAAGGTTTCTTAC+TGG | 0.334576 | 4.1:-56307260 | MS.gene63957:CDS |
GGGCTGGTTGGTATAGAAAT+TGG | 0.339600 | 4.1:-56306788 | MS.gene63957:CDS |
TTTGTCCACCGTGTCATTCA+TGG | 0.348673 | 4.1:+56307445 | None:intergenic |
GAATGACACGGTGGACAAAT+TGG | 0.367068 | 4.1:-56307441 | MS.gene63957:CDS |
TTCTCTTGGTATTAGTGGAT+TGG | 0.370396 | 4.1:-56306820 | MS.gene63957:CDS |
TTCTTGATAACCAAAGAAAA+TGG | 0.395137 | 4.1:+56307141 | None:intergenic |
TGCAATCACACTGTTTCTCT+TGG | 0.395141 | 4.1:-56306834 | MS.gene63957:CDS |
GTGTGATTGCAGAAAGGGTT+TGG | 0.412924 | 4.1:+56306846 | None:intergenic |
GCTTTCTAATTCAGGAGAAA+TGG | 0.428114 | 4.1:-56307180 | MS.gene63957:CDS |
AAACAGTGTGATTGCAGAAA+GGG | 0.428854 | 4.1:+56306841 | None:intergenic |
TGATAGAATAATGAGGCTTA+TGG | 0.438357 | 4.1:-56306919 | MS.gene63957:CDS |
TGGAACTGTGGATGCAAACT+TGG | 0.446439 | 4.1:-56307117 | MS.gene63957:CDS |
ATGTTTCCAAGCTTGCAAAC+TGG | 0.447747 | 4.1:-56307364 | MS.gene63957:CDS |
GGAATTAATTGACTTTATGA+AGG | 0.456415 | 4.1:+56306765 | None:intergenic |
AGCAGAAAAGCATTCAGAAC+TGG | 0.460756 | 4.1:-56307275 | MS.gene63957:CDS |
TGGTTTCTGCATGGGCTGGT+TGG | 0.463961 | 4.1:-56306800 | MS.gene63957:CDS |
TAGTGGATTGGTTTCTGCAT+GGG | 0.486842 | 4.1:-56306808 | MS.gene63957:CDS |
TGCAGATTTGATTATAGCAT+TGG | 0.487810 | 4.1:-56306880 | MS.gene63957:CDS |
GGATTGGTTTCTGCATGGGC+TGG | 0.505965 | 4.1:-56306804 | MS.gene63957:CDS |
TTAGTGGATTGGTTTCTGCA+TGG | 0.506709 | 4.1:-56306809 | MS.gene63957:CDS |
TTTGTTGAATGAAGGGTTGA+AGG | 0.511768 | 4.1:-56307021 | MS.gene63957:CDS |
AATGCTCTTAGAAGAAATCC+TGG | 0.530140 | 4.1:-56307233 | MS.gene63957:CDS |
GAAACAGTGTGATTGCAGAA+AGG | 0.556504 | 4.1:+56306840 | None:intergenic |
CAAGCTTGCAAACTGGCGTG+TGG | 0.589710 | 4.1:-56307357 | MS.gene63957:CDS |
CTTAAAGTGAGAGTAGAACC+AGG | 0.591365 | 4.1:+56307215 | None:intergenic |
AAAGCGTAGAAGTTCTTCAG+AGG | 0.604842 | 4.1:-56306991 | MS.gene63957:CDS |
AAGCGTAGAAGTTCTTCAGA+GGG | 0.606810 | 4.1:-56306990 | MS.gene63957:CDS |
GAAAAGCATTCAGAACTGGA+AGG | 0.628321 | 4.1:-56307271 | MS.gene63957:CDS |
GTTATCAAGAATTGGAACTG+TGG | 0.648703 | 4.1:-56307129 | MS.gene63957:CDS |
CTCATCCTGATATATCCAAG+AGG | 0.684877 | 4.1:-56307328 | MS.gene63957:CDS |
TATTTCTACCATGAATGACA+CGG | 0.724279 | 4.1:-56307453 | None:intergenic |
TTCTACCATGAATGACACGG+TGG | 0.727599 | 4.1:-56307450 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAGTGATAGAATAATG+AGG | - | chr4.1:56307296-56307315 | MS.gene63957:CDS | 20.0% |
!!! | ATTTCATTTTGTTGAATGAA+GGG | - | chr4.1:56307194-56307213 | MS.gene63957:CDS | 20.0% |
! | TTTCTTTGGTTATCAAGAAT+TGG | - | chr4.1:56307085-56307104 | MS.gene63957:CDS | 25.0% |
!! | GATTTCATTTTGTTGAATGA+AGG | - | chr4.1:56307193-56307212 | MS.gene63957:CDS | 25.0% |
!! | TTCTTGATAACCAAAGAAAA+TGG | + | chr4.1:56307084-56307103 | None:intergenic | 25.0% |
ATCCAAGAGGTTCAAAAATT+GGG | - | chr4.1:56306907-56306926 | MS.gene63957:CDS | 30.0% | |
TATCCAAGAGGTTCAAAAAT+TGG | - | chr4.1:56306906-56306925 | MS.gene63957:CDS | 30.0% | |
TGATAGAATAATGAGGCTTA+TGG | - | chr4.1:56307303-56307322 | MS.gene63957:CDS | 30.0% | |
TGCAGATTTGATTATAGCAT+TGG | - | chr4.1:56307342-56307361 | MS.gene63957:CDS | 30.0% | |
! | ATGAGTTTCATATCTGCTTT+TGG | - | chr4.1:56307136-56307155 | MS.gene63957:CDS | 30.0% |
! | TCTTCTTTGACCATTTTCTT+TGG | - | chr4.1:56307071-56307090 | MS.gene63957:CDS | 30.0% |
AAAAATTGGGAAGTAGCTTC+TGG | - | chr4.1:56306920-56306939 | MS.gene63957:CDS | 35.0% | |
AAACAGTGTGATTGCAGAAA+GGG | + | chr4.1:56307384-56307403 | None:intergenic | 35.0% | |
AATGCTCTTAGAAGAAATCC+TGG | - | chr4.1:56306989-56307008 | MS.gene63957:CDS | 35.0% | |
ATCTTCCTAGCAAAAAGAGA+TGG | - | chr4.1:56306806-56306825 | MS.gene63957:CDS | 35.0% | |
GCTTTCTAATTCAGGAGAAA+TGG | - | chr4.1:56307042-56307061 | MS.gene63957:CDS | 35.0% | |
GTTATCAAGAATTGGAACTG+TGG | - | chr4.1:56307093-56307112 | MS.gene63957:CDS | 35.0% | |
TTGAACCTCTTGGATATATC+AGG | + | chr4.1:56306902-56306921 | None:intergenic | 35.0% | |
TTGCAAGCTTGGAAACATAT+TGG | + | chr4.1:56306856-56306875 | None:intergenic | 35.0% | |
TTTGTTGAATGAAGGGTTGA+AGG | - | chr4.1:56307201-56307220 | MS.gene63957:CDS | 35.0% | |
! | ACTGTTTCTCTTGGTATTAG+TGG | - | chr4.1:56307397-56307416 | MS.gene63957:CDS | 35.0% |
! | TTCCCAATTTTTGAACCTCT+TGG | + | chr4.1:56306912-56306931 | None:intergenic | 35.0% |
! | TTCTCTTGGTATTAGTGGAT+TGG | - | chr4.1:56307402-56307421 | MS.gene63957:CDS | 35.0% |
!! | TTTCATATCTGCTTTTGGTG+AGG | - | chr4.1:56307141-56307160 | MS.gene63957:CDS | 35.0% |
AAAGCGTAGAAGTTCTTCAG+AGG | - | chr4.1:56307231-56307250 | MS.gene63957:CDS | 40.0% | |
AAGCGTAGAAGTTCTTCAGA+GGG | - | chr4.1:56307232-56307251 | MS.gene63957:CDS | 40.0% | |
AGAACTGGAAGGTTTCTTAC+TGG | - | chr4.1:56306962-56306981 | MS.gene63957:CDS | 40.0% | |
ATGTTTCCAAGCTTGCAAAC+TGG | - | chr4.1:56306858-56306877 | MS.gene63957:CDS | 40.0% | |
CTAGCAGTGCTTTCTAATTC+AGG | - | chr4.1:56307034-56307053 | MS.gene63957:CDS | 40.0% | |
CTCATCCTGATATATCCAAG+AGG | - | chr4.1:56306894-56306913 | MS.gene63957:CDS | 40.0% | |
CTTAAAGTGAGAGTAGAACC+AGG | + | chr4.1:56307010-56307029 | None:intergenic | 40.0% | |
GAAACAGTGTGATTGCAGAA+AGG | + | chr4.1:56307385-56307404 | None:intergenic | 40.0% | |
! | CTATGCCATCTCTTTTTGCT+AGG | + | chr4.1:56306814-56306833 | None:intergenic | 40.0% |
! | TGCAATCACACTGTTTCTCT+TGG | - | chr4.1:56307388-56307407 | MS.gene63957:CDS | 40.0% |
!! | AGCAGAAAAGCATTCAGAAC+TGG | - | chr4.1:56306947-56306966 | MS.gene63957:CDS | 40.0% |
!! | CTGGTTCTACTCTCACTTTA+AGG | - | chr4.1:56307008-56307027 | MS.gene63957:CDS | 40.0% |
!! | GAAAAGCATTCAGAACTGGA+AGG | - | chr4.1:56306951-56306970 | MS.gene63957:CDS | 40.0% |
!! | TAGTGGATTGGTTTCTGCAT+GGG | - | chr4.1:56307414-56307433 | MS.gene63957:CDS | 40.0% |
!! | TTAGTGGATTGGTTTCTGCA+TGG | - | chr4.1:56307413-56307432 | MS.gene63957:CDS | 40.0% |
GAATGACACGGTGGACAAAT+TGG | - | chr4.1:56306781-56306800 | MS.gene63957:CDS | 45.0% | |
GTGTGATTGCAGAAAGGGTT+TGG | + | chr4.1:56307379-56307398 | None:intergenic | 45.0% | |
TGGAACTGTGGATGCAAACT+TGG | - | chr4.1:56307105-56307124 | MS.gene63957:CDS | 45.0% | |
!! | GGGCTGGTTGGTATAGAAAT+TGG | - | chr4.1:56307434-56307453 | MS.gene63957:CDS | 45.0% |
!! | ATCTGCTTTTGGTGAGGCTG+TGG | - | chr4.1:56307147-56307166 | MS.gene63957:CDS | 50.0% |
!! | TCTGCTTTTGGTGAGGCTGT+GGG | - | chr4.1:56307148-56307167 | MS.gene63957:CDS | 50.0% |
CAAGCTTGCAAACTGGCGTG+TGG | - | chr4.1:56306865-56306884 | MS.gene63957:CDS | 55.0% | |
CACACGCCAGTTTGCAAGCT+TGG | + | chr4.1:56306867-56306886 | None:intergenic | 55.0% | |
!! | GGATTGGTTTCTGCATGGGC+TGG | - | chr4.1:56307418-56307437 | MS.gene63957:CDS | 55.0% |
!! | TGGTTTCTGCATGGGCTGGT+TGG | - | chr4.1:56307422-56307441 | MS.gene63957:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 56306779 | 56307465 | 56306779 | ID=MS.gene63957 |
chr4.1 | mRNA | 56306779 | 56307465 | 56306779 | ID=MS.gene63957.t1;Parent=MS.gene63957 |
chr4.1 | exon | 56306779 | 56307465 | 56306779 | ID=MS.gene63957.t1.exon1;Parent=MS.gene63957.t1 |
chr4.1 | CDS | 56306779 | 56307465 | 56306779 | ID=cds.MS.gene63957.t1;Parent=MS.gene63957.t1 |
Gene Sequence |
Protein sequence |