AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64795

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64795.t1 MTR_5g022560 96.221 344 11 1 1 342 1 344 0.0 693
MS.gene64795.t1 MTR_4g079770 89.017 346 33 4 1 342 1 345 0.0 633
MS.gene64795.t1 MTR_4g107930 88.406 345 37 2 1 342 1 345 0.0 631
MS.gene64795.t1 MTR_4g047610 89.826 344 32 2 1 342 1 343 0.0 628
MS.gene64795.t1 MTR_4g079470 88.923 325 32 3 21 342 22 345 0.0 598
MS.gene64795.t1 MTR_4g079800 86.769 325 39 3 21 342 22 345 0.0 585
MS.gene64795.t1 MTR_2g075830 75.581 344 79 3 1 342 1 341 0.0 524
MS.gene64795.t1 MTR_4g080700 66.873 323 95 6 25 342 25 340 1.34e-157 445
MS.gene64795.t1 MTR_4g080730 63.112 347 116 6 1 342 1 340 5.42e-157 443
MS.gene64795.t1 MTR_4g080360 53.097 339 152 5 8 342 7 342 3.98e-130 375
MS.gene64795.t1 MTR_2g083930 53.709 337 141 5 12 340 13 342 1.96e-128 371
MS.gene64795.t1 MTR_4g104370 55.394 343 140 10 6 340 5 342 4.29e-126 366
MS.gene64795.t1 MTR_3g075390 53.079 341 142 8 14 340 7 343 4.19e-123 358
MS.gene64795.t1 MTR_7g078600 57.792 308 121 6 34 340 37 336 6.49e-121 352
MS.gene64795.t1 MTR_4g079440 54.693 309 132 4 34 340 41 343 8.91e-120 349
MS.gene64795.t1 MTR_1g107550 55.280 322 126 9 32 340 38 354 4.28e-117 347
MS.gene64795.t1 MTR_2g090890 50.294 340 153 7 10 341 5 336 6.85e-117 342
MS.gene64795.t1 MTR_7g079230 50.294 340 163 4 1 340 1 334 1.87e-116 340
MS.gene64795.t1 MTR_3g116080 52.522 337 145 8 12 341 19 347 1.70e-115 338
MS.gene64795.t1 MTR_4g094918 49.412 340 160 7 10 341 6 341 7.32e-114 335
MS.gene64795.t1 MTR_3g102220 51.682 327 138 8 27 340 41 360 2.25e-111 332
MS.gene64795.t1 MTR_1g018840 49.716 352 146 9 8 340 21 360 2.15e-110 329
MS.gene64795.t1 MTR_1g018840 49.716 352 146 9 8 340 21 360 3.61e-110 329
MS.gene64795.t1 MTR_2g015850 54.483 290 123 6 55 340 78 362 8.48e-100 299
MS.gene64795.t1 MTR_3g112430 49.518 311 142 6 40 341 37 341 8.65e-99 299
MS.gene64795.t1 MTR_2g016180 46.349 315 151 9 37 341 49 355 3.47e-85 266
MS.gene64795.t1 MTR_2g016270 46.474 312 140 9 37 341 49 340 1.73e-83 261
MS.gene64795.t1 MTR_2g067900 46.519 316 148 10 38 339 15 323 1.18e-79 246
MS.gene64795.t1 MTR_2g064475 42.241 348 146 16 38 341 15 351 5.95e-75 235
MS.gene64795.t1 MTR_2g067560 46.250 320 141 14 38 336 15 324 7.83e-74 245
MS.gene64795.t1 MTR_4g125300 41.558 308 161 10 41 341 53 348 3.59e-69 220
MS.gene64795.t1 MTR_2g015920 40.248 323 171 12 31 341 46 358 4.11e-69 221
MS.gene64795.t1 MTR_4g065077 39.308 318 180 8 32 341 44 356 6.33e-69 220
MS.gene64795.t1 MTR_7g078630 45.105 286 115 6 28 301 695 950 1.59e-68 231
MS.gene64795.t1 MTR_2g066980 36.236 356 168 13 7 341 1 318 2.03e-67 214
MS.gene64795.t1 MTR_2g015930 39.432 317 172 10 37 341 50 358 6.22e-66 212
MS.gene64795.t1 MTR_1g023810 42.164 268 131 7 75 339 15 261 1.23e-63 203
MS.gene64795.t1 MTR_4g071060 39.062 320 166 11 37 338 45 353 2.92e-63 205
MS.gene64795.t1 MTR_1g023210 37.092 337 169 12 23 333 33 352 3.78e-61 200
MS.gene64795.t1 MTR_8g086470 37.025 316 174 8 32 341 60 356 2.12e-60 198
MS.gene64795.t1 MTR_1g094135 35.112 356 196 10 7 338 19 363 2.85e-58 193
MS.gene64795.t1 MTR_4g072790 33.851 322 167 11 25 338 34 317 7.69e-45 156
MS.gene64795.t1 MTR_2g015840 50.993 151 68 4 16 161 7 156 7.40e-43 149
MS.gene64795.t1 MTR_2g015840 57.143 112 47 1 230 341 161 271 1.87e-36 133
MS.gene64795.t1 MTR_4g073660 32.308 325 172 10 25 338 33 320 1.23e-42 150
MS.gene64795.t1 MTR_4g072340 32.308 325 172 10 25 338 34 321 1.24e-42 150
MS.gene64795.t1 MTR_7g078580 63.265 98 35 1 243 340 4 100 2.68e-40 138
MS.gene64795.t1 MTR_7g079130 68.889 90 28 0 251 340 7 96 1.46e-39 135
MS.gene64795.t1 MTR_1g025450 40.884 181 82 8 120 294 47 208 1.10e-32 127
MS.gene64795.t1 MTR_7g078310 45.000 140 68 2 82 219 115 247 1.14e-29 114
MS.gene64795.t1 MTR_2g016380 46.957 115 56 3 230 341 23 135 3.07e-26 105
MS.gene64795.t1 MTR_3g029560 27.600 250 147 7 98 341 16 237 3.41e-23 96.7
MS.gene64795.t1 MTR_7g111060 27.711 249 146 8 112 333 89 330 6.68e-23 98.2
MS.gene64795.t1 MTR_7g111050 29.787 235 133 8 132 341 110 337 2.74e-22 96.7
MS.gene64795.t1 MTR_7g079260 59.722 72 13 1 267 338 7 62 3.45e-22 90.1
MS.gene64795.t1 MTR_8g087510 40.769 130 70 5 167 293 23 148 4.70e-19 83.6
MS.gene64795.t1 MTR_2g047960 48.235 85 43 1 135 219 7 90 4.54e-18 79.0
MS.gene64795.t1 MTR_3g082370 27.094 203 128 6 131 317 5 203 1.14e-17 81.3
MS.gene64795.t1 MTR_7g111050 27.692 195 115 6 132 303 105 296 1.23e-12 67.8
MS.gene64795.t1 MTR_1g042480 34.043 94 59 2 9 101 7 98 5.32e-11 60.1
MS.gene64795.t1 MTR_1g042360 34.043 94 59 2 9 101 7 98 5.32e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64795.t1 AT5G45890 54.493 345 145 5 7 341 3 345 1.14e-133 384
MS.gene64795.t1 AT5G50260 53.913 345 133 7 14 340 5 341 1.67e-126 367
MS.gene64795.t1 AT2G34080 50.588 340 159 5 10 342 8 345 2.67e-122 355
MS.gene64795.t1 AT3G48340 53.890 347 134 9 12 340 4 342 9.90e-122 355
MS.gene64795.t1 AT3G49340 51.176 340 143 6 20 342 8 341 2.69e-121 353
MS.gene64795.t1 AT3G19390 50.755 331 157 5 14 341 18 345 6.20e-117 346
MS.gene64795.t1 AT2G27420 48.563 348 156 6 14 342 5 348 1.31e-115 339
MS.gene64795.t1 AT3G48350 55.806 310 126 8 39 341 38 343 2.24e-114 336
MS.gene64795.t1 AT5G43060 53.681 326 135 8 24 340 34 352 4.50e-114 339
MS.gene64795.t1 AT4G35350 53.035 313 134 6 35 341 47 352 5.06e-114 335
MS.gene64795.t1 AT1G29090 47.727 352 168 7 4 342 7 355 9.22e-114 334
MS.gene64795.t1 AT3G19400 51.466 307 143 4 39 341 44 348 6.70e-113 332
MS.gene64795.t1 AT4G36880 51.077 325 139 7 32 341 42 361 9.47e-111 327
MS.gene64795.t1 AT1G47128 51.780 309 135 8 39 340 50 351 1.31e-109 327
MS.gene64795.t1 AT1G20850 51.923 312 136 6 37 341 49 353 2.93e-109 323
MS.gene64795.t1 AT1G29080 47.917 336 165 6 15 342 13 346 4.78e-109 322
MS.gene64795.t1 AT1G06260 50.294 340 154 8 9 340 9 341 1.80e-108 320
MS.gene64795.t1 AT4G23520 49.515 309 140 9 40 340 48 348 4.81e-101 302
MS.gene64795.t1 AT1G09850 49.351 308 151 4 35 340 28 332 1.84e-100 303
MS.gene64795.t1 AT4G11310 47.573 309 147 6 40 340 50 351 6.35e-99 297
MS.gene64795.t1 AT4G11320 46.278 309 151 6 40 340 57 358 3.04e-97 293
MS.gene64795.t1 AT4G11320 46.278 309 151 6 40 340 57 358 3.04e-97 293
MS.gene64795.t1 AT3G43960 44.681 329 173 6 18 340 20 345 8.79e-90 274
MS.gene64795.t1 AT1G29110 43.478 322 157 8 29 341 28 333 2.01e-86 264
MS.gene64795.t1 AT4G35350 50.202 247 110 6 35 275 47 286 4.28e-80 246
MS.gene64795.t1 AT3G19400 49.793 241 116 3 39 275 44 283 1.84e-79 244
MS.gene64795.t1 AT3G48350 53.279 244 103 8 39 275 38 277 8.56e-76 235
MS.gene64795.t1 AT5G60360 44.156 308 153 11 41 341 61 356 5.94e-73 230
MS.gene64795.t1 AT5G60360 43.831 308 153 12 41 341 61 355 1.96e-70 224
MS.gene64795.t1 AT3G45310 42.071 309 160 11 41 342 61 357 8.80e-69 219
MS.gene64795.t1 AT5G60360 43.478 299 150 11 41 332 61 347 2.49e-68 218
MS.gene64795.t1 AT3G45310 41.748 309 160 12 41 342 61 356 3.71e-66 213
MS.gene64795.t1 AT2G21430 35.977 353 189 12 7 333 8 349 6.18e-62 202
MS.gene64795.t1 AT4G39090 38.658 313 159 11 46 338 58 357 6.63e-62 202
MS.gene64795.t1 AT3G54940 38.095 315 158 10 42 333 54 354 1.16e-57 191
MS.gene64795.t1 AT4G16190 39.172 314 162 10 44 338 60 363 2.29e-57 190
MS.gene64795.t1 AT3G54940 38.596 228 123 5 42 257 54 276 3.49e-43 150
MS.gene64795.t1 AT4G01610 27.113 284 177 8 75 333 52 330 2.93e-23 99.4
MS.gene64795.t1 AT1G02305 26.446 363 196 16 6 333 7 333 5.03e-23 98.6
MS.gene64795.t1 AT4G01610 26.761 284 178 8 75 333 52 330 4.81e-22 95.9
MS.gene64795.t1 AT1G02300 29.384 211 121 7 145 333 146 350 2.42e-19 88.6
MS.gene64795.t1 AT2G22160 42.718 103 54 3 43 145 1 98 3.39e-17 76.6

Find 86 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAATTGCTACAGAAAT+TGG 0.238620 5.2:-13556176 None:intergenic
AATATGATATAATTGATTAT+TGG 0.245014 5.2:-13555324 None:intergenic
TACAAAAGTGGTGTATTTAC+TGG 0.253916 5.2:+13556221 MS.gene64795:CDS
TACATTGAAGCTTTCAATAA+TGG 0.255324 5.2:+13555521 MS.gene64795:CDS
TGTTCCATCAACACCTTGAT+AGG 0.273901 5.2:-13556057 None:intergenic
TTCCTCCAATCCACTGTAGA+TGG 0.300644 5.2:-13555695 None:intergenic
TTGCAATGCTTGCTCATTGT+TGG 0.345681 5.2:-13556135 None:intergenic
ATCTATGCAGCCACTATTAC+CGG 0.353911 5.2:+13556095 MS.gene64795:CDS
TGATTAATGCCTAGTTTGTA+TGG 0.354887 5.2:-13555557 None:intergenic
GAACTCATGGGGAACTGATT+GGG 0.362958 5.2:+13556328 MS.gene64795:CDS
AAATTCATCATTCAAAATCA+TGG 0.364764 5.2:+13556011 MS.gene64795:CDS
GCAACCTTGGTCCACACCTT+TGG 0.378000 5.2:-13555961 None:intergenic
TACCCCTATCAAGGTGTTGA+TGG 0.400072 5.2:+13556053 MS.gene64795:CDS
TCAATTATATCATATTTCAT+TGG 0.405472 5.2:+13555331 MS.gene64795:CDS
GGTGTCACTGCCGTAGGTTA+TGG 0.419357 5.2:+13556269 MS.gene64795:CDS
AGGTTGCGAGGGTGGTCTAA+TGG 0.427677 5.2:+13555977 MS.gene64795:CDS
GCTCTGTGGCATTGCAATGC+AGG 0.434661 5.2:+13556400 MS.gene64795:CDS
AGAACTCATGGGGAACTGAT+TGG 0.436487 5.2:+13556327 MS.gene64795:CDS
AATGCTTGCTCATTGTTGGC+AGG 0.438570 5.2:-13556131 None:intergenic
CATTGGCCTTGGTTCTTCAC+AGG 0.447016 5.2:-13555734 None:intergenic
GACACTTACCACATTGGCCT+TGG 0.449261 5.2:-13555745 None:intergenic
ATATCATATTTCATTGGCAT+TGG 0.451673 5.2:+13555337 MS.gene64795:CDS
GGAATTCATAAGTTGAGTAC+TGG 0.452855 5.2:+13555894 MS.gene64795:CDS
AGGATACATTATGATGCAAA+GGG 0.457248 5.2:+13556358 MS.gene64795:CDS
ATCTTCATACCCGGTAATAG+TGG 0.466102 5.2:-13556105 None:intergenic
GGTTATGGTGTTAGTAATGA+TGG 0.466813 5.2:+13556284 MS.gene64795:CDS
GTTCTTAACCAACCAATACT+TGG 0.469107 5.2:-13556309 None:intergenic
GGAACTGATTGGGGTGAAGA+AGG 0.474210 5.2:+13556338 MS.gene64795:CDS
AAGTTTGGCATTTAAGCAGT+AGG 0.477282 5.2:-13556431 None:intergenic
TCTCATGCATGGAACCATCT+TGG 0.477831 5.2:-13555406 None:intergenic
TAAGTTGAGTACTGGAAAGT+TGG 0.485027 5.2:+13555902 MS.gene64795:CDS
AGATGCTACAAACTCCTCAT+TGG 0.495942 5.2:-13555594 None:intergenic
ATTGGTTGGTTAAGAACTCA+TGG 0.497126 5.2:+13556315 MS.gene64795:CDS
GAGCAGTGGATGAGTCACTA+TGG 0.500053 5.2:+13555434 MS.gene64795:CDS
CAATTCCATCTACAGTGGAT+TGG 0.509500 5.2:+13555690 MS.gene64795:CDS
TCTGCTGTTGCAGCAACTGA+AGG 0.516542 5.2:+13555873 MS.gene64795:CDS
GTAATGATGGAACCAAGTAT+TGG 0.517960 5.2:+13556297 MS.gene64795:CDS
GTGGACCAAGGTTGCGAGGG+TGG 0.519583 5.2:+13555969 MS.gene64795:CDS
AGCATCTAGGAACAAATTCA+AGG 0.524056 5.2:+13555610 MS.gene64795:CDS
CTGTAGCAATTGATGCTAGT+GGG 0.531888 5.2:+13556183 MS.gene64795:CDS
CTGCTCATGCCTCTCATGCA+TGG 0.532697 5.2:-13555417 None:intergenic
TTCCATCTACAGTGGATTGG+AGG 0.533019 5.2:+13555693 MS.gene64795:CDS
TGGTTCATGCGGAACTGAGT+TGG 0.533466 5.2:+13556241 MS.gene64795:CDS
ACAGTGGATTGGAGGAAGAA+AGG 0.534477 5.2:+13555701 MS.gene64795:CDS
AAGGATACATTATGATGCAA+AGG 0.535444 5.2:+13556357 MS.gene64795:CDS
GTTCCATCAACACCTTGATA+GGG 0.537305 5.2:-13556056 None:intergenic
TAATTGATTATTGGCAGCCA+TGG 0.544682 5.2:-13555315 None:intergenic
TTAGACCACCCTCGCAACCT+TGG 0.545380 5.2:-13555974 None:intergenic
AGGGGAGTTGAAGCTGCTGA+AGG 0.548793 5.2:+13556377 MS.gene64795:CDS
TCTGTAGCAATTGATGCTAG+TGG 0.551551 5.2:+13556182 MS.gene64795:CDS
TAGATAGACACTTACCACAT+TGG 0.554580 5.2:-13555751 None:intergenic
AGTTTGGCATTTAAGCAGTA+GGG 0.554948 5.2:-13556430 None:intergenic
ATGAGGAGTTTGTAGCATCT+AGG 0.557730 5.2:+13555597 MS.gene64795:CDS
GAAGCTCAATACCCCTATCA+AGG 0.559311 5.2:+13556044 MS.gene64795:CDS
AACTCATGGGGAACTGATTG+GGG 0.563189 5.2:+13556329 MS.gene64795:CDS
TGATGGAACCAAGTATTGGT+TGG 0.568906 5.2:+13556301 MS.gene64795:CDS
TTGGTTGGTTAAGAACTCAT+GGG 0.574582 5.2:+13556316 MS.gene64795:CDS
ACTTCTCGCACTCTCCAAGA+TGG 0.576062 5.2:+13555392 MS.gene64795:CDS
ATGCTTGCTCATTGTTGGCA+GGG 0.585035 5.2:-13556130 None:intergenic
AGAAATTGGTTGATTTGCCA+CGG 0.587106 5.2:-13556162 None:intergenic
AGTAACAAACCATACAAACT+AGG 0.588321 5.2:+13555548 MS.gene64795:CDS
TGCGGAACTGAGTTGGATCA+CGG 0.591647 5.2:+13556248 MS.gene64795:CDS
AGGTGTGGACCAAGGTTGCG+AGG 0.594152 5.2:+13555965 MS.gene64795:CDS
GGGGAGTTGAAGCTGCTGAA+GGG 0.599415 5.2:+13556378 MS.gene64795:CDS
TTCCATCAACACCTTGATAG+GGG 0.602425 5.2:-13556055 None:intergenic
CTTGTTGATTGCGACACCAA+AGG 0.605991 5.2:+13555945 MS.gene64795:CDS
GGCAGGGACATCTTCATACC+CGG 0.606676 5.2:-13556114 None:intergenic
GCATCTAGGAACAAATTCAA+GGG 0.615159 5.2:+13555611 MS.gene64795:CDS
TGCATGAGAGGCATGAGCAG+TGG 0.619804 5.2:+13555420 MS.gene64795:CDS
ATTACTAACACCATAACCTA+CGG 0.625557 5.2:-13556279 None:intergenic
GGTGTGGACCAAGGTTGCGA+GGG 0.629368 5.2:+13555966 MS.gene64795:CDS
GATCACGGTGTCACTGCCGT+AGG 0.641748 5.2:+13556263 MS.gene64795:CDS
GGTGTATTTACTGGTTCATG+CGG 0.645001 5.2:+13556230 MS.gene64795:CDS
TGGTTGGTTAAGAACTCATG+GGG 0.647156 5.2:+13556317 MS.gene64795:CDS
AAGATGGTTCCATGCATGAG+AGG 0.652611 5.2:+13555408 MS.gene64795:CDS
TCTATGCAGCCACTATTACC+GGG 0.661085 5.2:+13556096 MS.gene64795:CDS
CTACAAACTCCTCATTGGTG+AGG 0.661600 5.2:-13555589 None:intergenic
ATTTGCAGACCTCACCAATG+AGG 0.664553 5.2:+13555580 MS.gene64795:CDS
GTGAAGAACCAAGGCCAATG+TGG 0.667923 5.2:+13555737 MS.gene64795:CDS
AAGTGCAATTCCATCTACAG+TGG 0.669087 5.2:+13555685 MS.gene64795:CDS
GACACCAAAGGTGTGGACCA+AGG 0.670622 5.2:+13555957 MS.gene64795:CDS
TGATTGCGACACCAAAGGTG+TGG 0.678453 5.2:+13555950 MS.gene64795:CDS
ATATGTGCTCTTCAATCACA+AGG 0.681864 5.2:+13555636 MS.gene64795:CDS
GAAGCTGCTGAAGGGCTCTG+TGG 0.682304 5.2:+13556386 MS.gene64795:CDS
GTGACACCTGTGAAGAACCA+AGG 0.693484 5.2:+13555728 MS.gene64795:CDS
GGATACATTATGATGCAAAG+GGG 0.728766 5.2:+13556359 MS.gene64795:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGATATAATTGATTAT+TGG - chr5.2:13555327-13555346 None:intergenic 10.0%
!! TCAATTATATCATATTTCAT+TGG + chr5.2:13555331-13555350 MS.gene64795:CDS 15.0%
!! AAATTCATCATTCAAAATCA+TGG + chr5.2:13556011-13556030 MS.gene64795:CDS 20.0%
!!! AATAGAATTTTCATCTAACT+CGG + chr5.2:13555808-13555827 MS.gene64795:intron 20.0%
!!! AATTTTAACTTGCATTTTGT+AGG + chr5.2:13555834-13555853 MS.gene64795:intron 20.0%
! ATATCATATTTCATTGGCAT+TGG + chr5.2:13555337-13555356 MS.gene64795:CDS 25.0%
! TACATTGAAGCTTTCAATAA+TGG + chr5.2:13555521-13555540 MS.gene64795:CDS 25.0%
!! ATAGAATTTTCATCTAACTC+GGG + chr5.2:13555809-13555828 MS.gene64795:intron 25.0%
!! GACTTTCAATTTTACAAAAG+TGG + chr5.2:13556209-13556228 MS.gene64795:CDS 25.0%
AAGGATACATTATGATGCAA+AGG + chr5.2:13556357-13556376 MS.gene64795:CDS 30.0%
AGGATACATTATGATGCAAA+GGG + chr5.2:13556358-13556377 MS.gene64795:CDS 30.0%
AGTAACAAACCATACAAACT+AGG + chr5.2:13555548-13555567 MS.gene64795:CDS 30.0%
ATTACTAACACCATAACCTA+CGG - chr5.2:13556282-13556301 None:intergenic 30.0%
TACAAAAGTGGTGTATTTAC+TGG + chr5.2:13556221-13556240 MS.gene64795:CDS 30.0%
! TGATTAATGCCTAGTTTGTA+TGG - chr5.2:13555560-13555579 None:intergenic 30.0%
AGCATCTAGGAACAAATTCA+AGG + chr5.2:13555610-13555629 MS.gene64795:CDS 35.0%
ATATGTGCTCTTCAATCACA+AGG + chr5.2:13555636-13555655 MS.gene64795:CDS 35.0%
GCATCAATTGCTACAGAAAT+TGG - chr5.2:13556179-13556198 None:intergenic 35.0%
GCATCTAGGAACAAATTCAA+GGG + chr5.2:13555611-13555630 MS.gene64795:CDS 35.0%
GGATACATTATGATGCAAAG+GGG + chr5.2:13556359-13556378 MS.gene64795:CDS 35.0%
GTTCTTAACCAACCAATACT+TGG - chr5.2:13556312-13556331 None:intergenic 35.0%
TAGATAGACACTTACCACAT+TGG - chr5.2:13555754-13555773 None:intergenic 35.0%
! ATTGGTTGGTTAAGAACTCA+TGG + chr5.2:13556315-13556334 MS.gene64795:CDS 35.0%
! GCATTTTGTAGGATGTTGTT+GGG + chr5.2:13555845-13555864 MS.gene64795:intron 35.0%
! GGAATTCATAAGTTGAGTAC+TGG + chr5.2:13555894-13555913 MS.gene64795:CDS 35.0%
! GGTTATGGTGTTAGTAATGA+TGG + chr5.2:13556284-13556303 MS.gene64795:CDS 35.0%
! GTAATGATGGAACCAAGTAT+TGG + chr5.2:13556297-13556316 MS.gene64795:CDS 35.0%
! TGCATTTTGTAGGATGTTGT+TGG + chr5.2:13555844-13555863 MS.gene64795:intron 35.0%
! TTGGTTGGTTAAGAACTCAT+GGG + chr5.2:13556316-13556335 MS.gene64795:CDS 35.0%
!! AGAAATTGGTTGATTTGCCA+CGG - chr5.2:13556165-13556184 None:intergenic 35.0%
!! TAAGTTGAGTACTGGAAAGT+TGG + chr5.2:13555902-13555921 MS.gene64795:CDS 35.0%
AAGTGCAATTCCATCTACAG+TGG + chr5.2:13555685-13555704 MS.gene64795:CDS 40.0%
AGATGCTACAAACTCCTCAT+TGG - chr5.2:13555597-13555616 None:intergenic 40.0%
ATCTATGCAGCCACTATTAC+CGG + chr5.2:13556095-13556114 MS.gene64795:CDS 40.0%
ATCTTCATACCCGGTAATAG+TGG - chr5.2:13556108-13556127 None:intergenic 40.0%
ATGAGGAGTTTGTAGCATCT+AGG + chr5.2:13555597-13555616 MS.gene64795:CDS 40.0%
CAATTCCATCTACAGTGGAT+TGG + chr5.2:13555690-13555709 MS.gene64795:CDS 40.0%
CTGTAGCAATTGATGCTAGT+GGG + chr5.2:13556183-13556202 MS.gene64795:CDS 40.0%
GTTCCATCAACACCTTGATA+GGG - chr5.2:13556059-13556078 None:intergenic 40.0%
TCTGTAGCAATTGATGCTAG+TGG + chr5.2:13556182-13556201 MS.gene64795:CDS 40.0%
TGTTCCATCAACACCTTGAT+AGG - chr5.2:13556060-13556079 None:intergenic 40.0%
TTCCATCAACACCTTGATAG+GGG - chr5.2:13556058-13556077 None:intergenic 40.0%
TTGCAATGCTTGCTCATTGT+TGG - chr5.2:13556138-13556157 None:intergenic 40.0%
! TGGTTGGTTAAGAACTCATG+GGG + chr5.2:13556317-13556336 MS.gene64795:CDS 40.0%
!! GGTGTATTTACTGGTTCATG+CGG + chr5.2:13556230-13556249 MS.gene64795:CDS 40.0%
!! TGATGGAACCAAGTATTGGT+TGG + chr5.2:13556301-13556320 MS.gene64795:CDS 40.0%
!!! ATTGGCATTGGTTTTCTGCT+TGG + chr5.2:13555349-13555368 MS.gene64795:CDS 40.0%
!!! TTGGCATTGGTTTTCTGCTT+GGG + chr5.2:13555350-13555369 MS.gene64795:CDS 40.0%
AACTCATGGGGAACTGATTG+GGG + chr5.2:13556329-13556348 MS.gene64795:CDS 45.0%
AAGATGGTTCCATGCATGAG+AGG + chr5.2:13555408-13555427 MS.gene64795:CDS 45.0%
AATGCTTGCTCATTGTTGGC+AGG - chr5.2:13556134-13556153 None:intergenic 45.0%
AGAACTCATGGGGAACTGAT+TGG + chr5.2:13556327-13556346 MS.gene64795:CDS 45.0%
ATGCTTGCTCATTGTTGGCA+GGG - chr5.2:13556133-13556152 None:intergenic 45.0%
ATTTGCAGACCTCACCAATG+AGG + chr5.2:13555580-13555599 MS.gene64795:CDS 45.0%
CTACAAACTCCTCATTGGTG+AGG - chr5.2:13555592-13555611 None:intergenic 45.0%
GAACTCATGGGGAACTGATT+GGG + chr5.2:13556328-13556347 MS.gene64795:CDS 45.0%
GAAGCTCAATACCCCTATCA+AGG + chr5.2:13556044-13556063 MS.gene64795:CDS 45.0%
TCTATGCAGCCACTATTACC+GGG + chr5.2:13556096-13556115 MS.gene64795:CDS 45.0%
TCTCATGCATGGAACCATCT+TGG - chr5.2:13555409-13555428 None:intergenic 45.0%
TTCCTCCAATCCACTGTAGA+TGG - chr5.2:13555698-13555717 None:intergenic 45.0%
! CTTGTTGATTGCGACACCAA+AGG + chr5.2:13555945-13555964 MS.gene64795:CDS 45.0%
! GGTTTTCTGCTTGGGATTGT+GGG + chr5.2:13555358-13555377 MS.gene64795:CDS 45.0%
! TGGTTTTCTGCTTGGGATTG+TGG + chr5.2:13555357-13555376 MS.gene64795:CDS 45.0%
!! ACAGTGGATTGGAGGAAGAA+AGG + chr5.2:13555701-13555720 MS.gene64795:CDS 45.0%
!! TACCCCTATCAAGGTGTTGA+TGG + chr5.2:13556053-13556072 MS.gene64795:CDS 45.0%
!! TTCCATCTACAGTGGATTGG+AGG + chr5.2:13555693-13555712 MS.gene64795:CDS 45.0%
ACTTCTCGCACTCTCCAAGA+TGG + chr5.2:13555392-13555411 MS.gene64795:CDS 50.0%
GAGCAGTGGATGAGTCACTA+TGG + chr5.2:13555434-13555453 MS.gene64795:CDS 50.0%
GGAACTGATTGGGGTGAAGA+AGG + chr5.2:13556338-13556357 MS.gene64795:CDS 50.0%
GTGAAGAACCAAGGCCAATG+TGG + chr5.2:13555737-13555756 MS.gene64795:CDS 50.0%
GTGACACCTGTGAAGAACCA+AGG + chr5.2:13555728-13555747 MS.gene64795:CDS 50.0%
TCTGCTGTTGCAGCAACTGA+AGG + chr5.2:13555873-13555892 MS.gene64795:CDS 50.0%
TGATTGCGACACCAAAGGTG+TGG + chr5.2:13555950-13555969 MS.gene64795:CDS 50.0%
TGGTTCATGCGGAACTGAGT+TGG + chr5.2:13556241-13556260 MS.gene64795:CDS 50.0%
! GACACTTACCACATTGGCCT+TGG - chr5.2:13555748-13555767 None:intergenic 50.0%
! GCAAGCATTGCAAAAAGCCG+TGG + chr5.2:13556145-13556164 MS.gene64795:CDS 50.0%
! TGCGGAACTGAGTTGGATCA+CGG + chr5.2:13556248-13556267 MS.gene64795:CDS 50.0%
!! CATTGGCCTTGGTTCTTCAC+AGG - chr5.2:13555737-13555756 None:intergenic 50.0%
AGGGGAGTTGAAGCTGCTGA+AGG + chr5.2:13556377-13556396 MS.gene64795:CDS 55.0%
AGGTTGCGAGGGTGGTCTAA+TGG + chr5.2:13555977-13555996 MS.gene64795:CDS 55.0%
CTGCTCATGCCTCTCATGCA+TGG - chr5.2:13555420-13555439 None:intergenic 55.0%
GCAACCTTGGTCCACACCTT+TGG - chr5.2:13555964-13555983 None:intergenic 55.0%
GCTCTGTGGCATTGCAATGC+AGG + chr5.2:13556400-13556419 MS.gene64795:CDS 55.0%
GGCAGGGACATCTTCATACC+CGG - chr5.2:13556117-13556136 None:intergenic 55.0%
GGGGAGTTGAAGCTGCTGAA+GGG + chr5.2:13556378-13556397 MS.gene64795:CDS 55.0%
TTAGACCACCCTCGCAACCT+TGG - chr5.2:13555977-13555996 None:intergenic 55.0%
! GACACCAAAGGTGTGGACCA+AGG + chr5.2:13555957-13555976 MS.gene64795:CDS 55.0%
! TGCATGAGAGGCATGAGCAG+TGG + chr5.2:13555420-13555439 MS.gene64795:CDS 55.0%
!! GGTGTCACTGCCGTAGGTTA+TGG + chr5.2:13556269-13556288 MS.gene64795:CDS 55.0%
AGGTGTGGACCAAGGTTGCG+AGG + chr5.2:13555965-13555984 MS.gene64795:CDS 60.0%
GAAGCTGCTGAAGGGCTCTG+TGG + chr5.2:13556386-13556405 MS.gene64795:CDS 60.0%
GGTGTGGACCAAGGTTGCGA+GGG + chr5.2:13555966-13555985 MS.gene64795:CDS 60.0%
!! GATCACGGTGTCACTGCCGT+AGG + chr5.2:13556263-13556282 MS.gene64795:CDS 60.0%
GTGGACCAAGGTTGCGAGGG+TGG + chr5.2:13555969-13555988 MS.gene64795:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 13555317 13556442 13555317 ID=MS.gene64795
chr5.2 mRNA 13555317 13556442 13555317 ID=MS.gene64795.t1;Parent=MS.gene64795
chr5.2 exon 13555317 13555758 13555317 ID=MS.gene64795.t1.exon1;Parent=MS.gene64795.t1
chr5.2 CDS 13555317 13555758 13555317 ID=cds.MS.gene64795.t1;Parent=MS.gene64795.t1
chr5.2 exon 13555856 13556442 13555856 ID=MS.gene64795.t1.exon2;Parent=MS.gene64795.t1
chr5.2 CDS 13555856 13556442 13555856 ID=cds.MS.gene64795.t1;Parent=MS.gene64795.t1
Gene Sequence

>MS.gene64795

ATGGCTGCCAATAATCAATTATATCATATTTCATTGGCATTGGTTTTCTGCTTGGGATTGTGGGCTATTCAAGTCACTTCTCGCACTCTCCAAGATGGTTCCATGCATGAGAGGCATGAGCAGTGGATGAGTCACTATGGCAAAGTCTATAATGATCATCAAGAACGAGAGAAGCGTTTCAAGATATTCACAGAAAACATGAAATACATTGAAGCTTTCAATAATGGTGACAGTAACAAACCATACAAACTAGGCATTAATCAATTTGCAGACCTCACCAATGAGGAGTTTGTAGCATCTAGGAACAAATTCAAGGGACATATGTGCTCTTCAATCACAAGGACAACTACTTTTAAGTATGAAAATGTAAGTGCAATTCCATCTACAGTGGATTGGAGGAAGAAAGGAGCAGTGACACCTGTGAAGAACCAAGGCCAATGTGGTAAGTGTCTATCTAAAAACTAATGCATTTAATTCAATATGTGATCAAAAATAGAATTTTCATCTAACTCGGGTAAATTTTAACTTGCATTTTGTAGGATGTTGTTGGGCGTTTTCTGCTGTTGCAGCAACTGAAGGAATTCATAAGTTGAGTACTGGAAAGTTGGTCTCTTTATCAGAACAAGAACTTGTTGATTGCGACACCAAAGGTGTGGACCAAGGTTGCGAGGGTGGTCTAATGGATGATGCTTTCAAATTCATCATTCAAAATCATGGACTCAGCACTGAAGCTCAATACCCCTATCAAGGTGTTGATGGAACATGCAATGCAAACAACATCTATGCAGCCACTATTACCGGGTATGAAGATGTCCCTGCCAACAATGAGCAAGCATTGCAAAAAGCCGTGGCAAATCAACCAATTTCTGTAGCAATTGATGCTAGTGGGTCTGACTTTCAATTTTACAAAAGTGGTGTATTTACTGGTTCATGCGGAACTGAGTTGGATCACGGTGTCACTGCCGTAGGTTATGGTGTTAGTAATGATGGAACCAAGTATTGGTTGGTTAAGAACTCATGGGGAACTGATTGGGGTGAAGAAGGATACATTATGATGCAAAGGGGAGTTGAAGCTGCTGAAGGGCTCTGTGGCATTGCAATGCAGGCATCTTACCCTACTGCTTAA
Protein sequence

>MS.gene64795.t1

MAANNQLYHISLALVFCLGLWAIQVTSRTLQDGSMHERHEQWMSHYGKVYNDHQEREKRFKIFTENMKYIEAFNNGDSNKPYKLGINQFADLTNEEFVASRNKFKGHMCSSITRTTTFKYENVSAIPSTVDWRKKGAVTPVKNQGQCGCCWAFSAVAATEGIHKLSTGKLVSLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLSTEAQYPYQGVDGTCNANNIYAATITGYEDVPANNEQALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSNDGTKYWLVKNSWGTDWGEEGYIMMQRGVEAAEGLCGIAMQASYPTA