Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64800.t1 | XP_003612215.2 | 93.8 | 839 | 5 | 2 | 1 | 837 | 1 | 794 | 0.00E+00 | 1515 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64800.t1 | Q7X659 | 71.4 | 837 | 189 | 3 | 1 | 837 | 1 | 787 | 0.0e+00 | 1177.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64800.t1 | G7JXK2 | 93.8 | 839 | 5 | 2 | 1 | 837 | 1 | 794 | 0.0e+00 | 1515.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene64800 | 0.852888 | 3.43E-61 | -1.69E-46 |
| MS.gene049254 | MS.gene64800 | 0.803773 | 2.97E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene64800 | 0.803497 | 3.39E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene64800 | 0.803242 | 3.83E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene64800 | 0.808268 | 3.37E-50 | -1.69E-46 |
| MS.gene049744 | MS.gene64800 | 0.865743 | 4.73E-65 | -1.69E-46 |
| MS.gene049807 | MS.gene64800 | 0.817967 | 2.51E-52 | -1.69E-46 |
| MS.gene050213 | MS.gene64800 | 0.821172 | 4.65E-53 | -1.69E-46 |
| MS.gene050224 | MS.gene64800 | 0.814966 | 1.18E-51 | -1.69E-46 |
| MS.gene050257 | MS.gene64800 | 0.821098 | 4.84E-53 | -1.69E-46 |
| MS.gene050258 | MS.gene64800 | 0.819003 | 1.46E-52 | -1.69E-46 |
| MS.gene050348 | MS.gene64800 | 0.80241 | 5.68E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene64800 | 0.826337 | 2.87E-54 | -1.69E-46 |
| MS.gene050556 | MS.gene64800 | 0.826934 | 2.07E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene64800 | 0.807711 | 4.42E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene64800 | 0.804129 | 2.50E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene64800 | 0.801341 | 9.43E-49 | -1.69E-46 |
| MS.gene051209 | MS.gene64800 | 0.810997 | 8.73E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene64800 | 0.815544 | 8.76E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene64800 | 0.840744 | 7.23E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene64800 | 0.80837 | 3.20E-50 | -1.69E-46 |
| MS.gene052037 | MS.gene64800 | 0.809698 | 1.66E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene64800 | 0.805326 | 1.41E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene64800 | 0.806747 | 7.08E-50 | -1.69E-46 |
| MS.gene052168 | MS.gene64800 | 0.821585 | 3.73E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene64800 | 0.870863 | 1.06E-66 | -1.69E-46 |
| MS.gene052311 | MS.gene64800 | 0.806598 | 7.61E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene64800 | 0.811841 | 5.72E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene64800 | 0.80652 | 7.91E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene64800 | 0.919679 | 3.33E-87 | -1.69E-46 |
| MS.gene052679 | MS.gene64800 | 0.809752 | 1.62E-50 | -1.69E-46 |
| MS.gene052681 | MS.gene64800 | 0.832656 | 8.34E-56 | -1.69E-46 |
| MS.gene052775 | MS.gene64800 | 0.843745 | 1.16E-58 | -1.69E-46 |
| MS.gene052776 | MS.gene64800 | 0.848688 | 5.23E-60 | -1.69E-46 |
| MS.gene053079 | MS.gene64800 | 0.840942 | 6.42E-58 | -1.69E-46 |
| MS.gene053143 | MS.gene64800 | 0.839326 | 1.69E-57 | -1.69E-46 |
| MS.gene05315 | MS.gene64800 | 0.803838 | 2.88E-49 | -1.69E-46 |
| MS.gene053486 | MS.gene64800 | 0.802939 | 4.42E-49 | -1.69E-46 |
| MS.gene053542 | MS.gene64800 | 0.801729 | 7.85E-49 | -1.69E-46 |
| MS.gene053620 | MS.gene64800 | 0.821438 | 4.04E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene64800 | 0.823056 | 1.70E-53 | -1.69E-46 |
| MS.gene054824 | MS.gene64800 | 0.843267 | 1.56E-58 | -1.69E-46 |
| MS.gene054892 | MS.gene64800 | 0.818452 | 1.95E-52 | -1.69E-46 |
| MS.gene054893 | MS.gene64800 | 0.815452 | 9.18E-52 | -1.69E-46 |
| MS.gene054943 | MS.gene64800 | 0.803743 | 3.01E-49 | -1.69E-46 |
| MS.gene055231 | MS.gene64800 | 0.802012 | 6.86E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene64800 | 0.823683 | 1.21E-53 | -1.69E-46 |
| MS.gene055386 | MS.gene64800 | 0.813621 | 2.33E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene64800 | 0.809104 | 2.23E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene64800 | 0.839273 | 1.75E-57 | -1.69E-46 |
| MS.gene055864 | MS.gene64800 | 0.816561 | 5.19E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene64800 | 0.817317 | 3.51E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene64800 | 0.819442 | 1.16E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene64800 | 0.804043 | 2.61E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene64800 | 0.832781 | 7.77E-56 | -1.69E-46 |
| MS.gene056507 | MS.gene64800 | 0.86198 | 7.01E-64 | -1.69E-46 |
| MS.gene056519 | MS.gene64800 | 0.848531 | 5.77E-60 | -1.69E-46 |
| MS.gene056622 | MS.gene64800 | 0.812796 | 3.54E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene64800 | 0.830881 | 2.29E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene64800 | 0.827789 | 1.29E-54 | -1.69E-46 |
| MS.gene056973 | MS.gene64800 | 0.826168 | 3.14E-54 | -1.69E-46 |
| MS.gene057034 | MS.gene64800 | 0.827428 | 1.57E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene64800 | 0.823768 | 1.16E-53 | -1.69E-46 |
| MS.gene057360 | MS.gene64800 | 0.809134 | 2.20E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene64800 | 0.810792 | 9.67E-51 | -1.69E-46 |
| MS.gene057919 | MS.gene64800 | 0.816381 | 5.69E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene64800 | 0.808698 | 2.73E-50 | -1.69E-46 |
| MS.gene058289 | MS.gene64800 | 0.881219 | 2.88E-70 | -1.69E-46 |
| MS.gene058292 | MS.gene64800 | 0.839769 | 1.30E-57 | -1.69E-46 |
| MS.gene058638 | MS.gene64800 | 0.82098 | 5.15E-53 | -1.69E-46 |
| MS.gene058639 | MS.gene64800 | 0.826325 | 2.89E-54 | -1.69E-46 |
| MS.gene058649 | MS.gene64800 | 0.839779 | 1.29E-57 | -1.69E-46 |
| MS.gene058668 | MS.gene64800 | 0.819369 | 1.20E-52 | -1.69E-46 |
| MS.gene058919 | MS.gene64800 | 0.851597 | 8.00E-61 | -1.69E-46 |
| MS.gene059170 | MS.gene64800 | 0.808159 | 3.55E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene64800 | 0.831236 | 1.87E-55 | -1.69E-46 |
| MS.gene059570 | MS.gene64800 | 0.814554 | 1.45E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene64800 | -0.816414 | 5.60E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene64800 | 0.820561 | 6.43E-53 | -1.69E-46 |
| MS.gene060777 | MS.gene64800 | 0.819371 | 1.20E-52 | -1.69E-46 |
| MS.gene060785 | MS.gene64800 | 0.819632 | 1.05E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene64800 | 0.882582 | 9.23E-71 | -1.69E-46 |
| MS.gene060935 | MS.gene64800 | 0.828412 | 9.12E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene64800 | 0.855159 | 7.61E-62 | -1.69E-46 |
| MS.gene061006 | MS.gene64800 | 0.801701 | 7.95E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene64800 | 0.832509 | 9.08E-56 | -1.69E-46 |
| MS.gene061160 | MS.gene64800 | 0.803517 | 3.36E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene64800 | 0.81885 | 1.58E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27090 | MS.gene64800 | PPI |
| MS.gene64041 | MS.gene64800 | PPI |
| MS.gene64038 | MS.gene64800 | PPI |
| MS.gene64039 | MS.gene64800 | PPI |
| MS.gene64800 | MS.gene24125 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64800.t1 | MTR_5g022610 | 93.802 | 839 | 5 | 2 | 1 | 837 | 1 | 794 | 0.0 | 1603 |
| MS.gene64800.t1 | MTR_5g022610 | 92.826 | 697 | 5 | 1 | 1 | 697 | 1 | 652 | 0.0 | 1313 |
| MS.gene64800.t1 | MTR_1g025610 | 73.095 | 840 | 174 | 4 | 1 | 837 | 1 | 791 | 0.0 | 1251 |
| MS.gene64800.t1 | MTR_1g025610 | 77.428 | 731 | 158 | 3 | 110 | 837 | 1 | 727 | 0.0 | 1170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64800.t1 | AT2G17790 | 72.640 | 837 | 179 | 3 | 1 | 837 | 1 | 787 | 0.0 | 1237 |
| MS.gene64800.t1 | AT1G75850 | 71.326 | 837 | 188 | 4 | 3 | 837 | 4 | 790 | 0.0 | 1221 |
| MS.gene64800.t1 | AT3G51310 | 68.862 | 835 | 206 | 5 | 6 | 837 | 3 | 786 | 0.0 | 1154 |
| MS.gene64800.t1 | AT1G75850 | 73.132 | 562 | 144 | 3 | 278 | 837 | 1 | 557 | 0.0 | 840 |
Find 181 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAATTGCATTGCTTAATT+TGG | 0.084194 | 5.2:+13590395 | None:intergenic |
| TATGCCTTAAGCGGGCTTTA+AGG | 0.189667 | 5.2:-13582685 | MS.gene64800:CDS |
| TTGAAAGCCTTTCCATTAAC+TGG | 0.202513 | 5.2:+13590475 | None:intergenic |
| TGTTCATTTCTGTGAAATTT+TGG | 0.207828 | 5.2:+13592556 | None:intergenic |
| CTGGTCTGCAGGGGCCTTCC+CGG | 0.210811 | 5.2:-13591801 | MS.gene64800:intron |
| GACAGTACTATCCCAGTTAA+TGG | 0.262602 | 5.2:-13590487 | MS.gene64800:CDS |
| TCTTTGAATTTCAATCCTTT+TGG | 0.271168 | 5.2:-13595503 | MS.gene64800:CDS |
| CATTCATAATTAACTCAATT+AGG | 0.271218 | 5.2:+13582434 | None:intergenic |
| ATGCGTGCTCACATTTGTTT+TGG | 0.279351 | 5.2:-13583210 | MS.gene64800:CDS |
| AGCATTGTTTGAACTGATAA+AGG | 0.285330 | 5.2:-13585663 | MS.gene64800:CDS |
| TGCAATCCATCAAGTAGAAT+TGG | 0.299727 | 5.2:+13591407 | None:intergenic |
| TGATCCAGAAGAGATGTTTA+AGG | 0.301898 | 5.2:-13585350 | MS.gene64800:intron |
| AGTCAAGAAGAAAATCCTTT+TGG | 0.307658 | 5.2:-13584448 | MS.gene64800:CDS |
| CCTTGACGTTCCAACTAATA+AGG | 0.309908 | 5.2:-13585837 | MS.gene64800:CDS |
| GTTGGCCCAATTCTACTTGA+TGG | 0.310066 | 5.2:-13591413 | MS.gene64800:CDS |
| CACAGAAATGAACAAACTTT+GGG | 0.324886 | 5.2:-13592547 | MS.gene64800:CDS |
| ACAGCTATCCATTTGATAAT+AGG | 0.329025 | 5.2:-13583440 | MS.gene64800:CDS |
| GATCATCATTATAAAACATT+TGG | 0.340860 | 5.2:+13585368 | None:intergenic |
| TCACAGAAATGAACAAACTT+TGG | 0.345532 | 5.2:-13592548 | MS.gene64800:CDS |
| AAGGATAAATTGCCGGATAT+TGG | 0.347189 | 5.2:-13593051 | MS.gene64800:CDS |
| GGGCGCTTACCCTCAACTTC+AGG | 0.349713 | 5.2:-13591332 | MS.gene64800:intron |
| AAGCCCGCTTAAGGCATAAT+AGG | 0.353896 | 5.2:+13582690 | None:intergenic |
| AGTTACAGTTGCTGCTATCC+AGG | 0.385834 | 5.2:-13582458 | MS.gene64800:CDS |
| TCCTGCTAAGGATGTTCTTA+AGG | 0.387412 | 5.2:-13593151 | MS.gene64800:CDS |
| CTCGCCTTAAACATCTCTTC+TGG | 0.388061 | 5.2:+13585346 | None:intergenic |
| CAAACTCTTGATGTGCTGTT+GGG | 0.388585 | 5.2:-13591352 | MS.gene64800:CDS |
| ATGTCTTCGGTGTTGAGAAC+AGG | 0.390066 | 5.2:-13583400 | MS.gene64800:CDS |
| AAGCTCGTAAAGATCAATAA+TGG | 0.401737 | 5.2:+13595170 | None:intergenic |
| GCATTGTTTGAACTGATAAA+GGG | 0.403489 | 5.2:-13585662 | MS.gene64800:CDS |
| TTATCTTTCTCAAGTTAGTA+AGG | 0.406534 | 5.2:-13593070 | MS.gene64800:CDS |
| TTCCTCGCCGCCGGGATCGC+CGG | 0.408704 | 5.2:-13595645 | MS.gene64800:CDS |
| TCCAAATTAAGCAATGCAAT+TGG | 0.414365 | 5.2:-13590396 | MS.gene64800:CDS |
| GTTTGCAAATGGTACTCATC+AGG | 0.414564 | 5.2:+13591370 | None:intergenic |
| CAGCCTGACATGCCCACTGC+TGG | 0.415024 | 5.2:-13586365 | MS.gene64800:CDS |
| AAGAAGAGAGAATACGGTTA+GGG | 0.419621 | 5.2:+13595568 | None:intergenic |
| GAGGAACTTCTCTTCATCTT+CGG | 0.420874 | 5.2:+13595662 | None:intergenic |
| TCCACATGTCAAACCTTGAT+TGG | 0.421015 | 5.2:+13582301 | None:intergenic |
| CAATCCTTAAAGCCCGCTTA+AGG | 0.421497 | 5.2:+13582681 | None:intergenic |
| TTTCTCGTTTCTCCTTCTCC+CGG | 0.421907 | 5.2:+13591782 | None:intergenic |
| CTGTTGAAGTCCGGCGATCC+CGG | 0.424132 | 5.2:+13595635 | None:intergenic |
| GCAAACTCTTGATGTGCTGT+TGG | 0.425162 | 5.2:-13591353 | MS.gene64800:CDS |
| TGGTCTGCAGGGGCCTTCCC+GGG | 0.427856 | 5.2:-13591800 | MS.gene64800:intron |
| GCAAAATGTTGCCGGCGTGC+TGG | 0.429765 | 5.2:+13595145 | None:intergenic |
| TTGGGTGCGGATGCAGCATC+AGG | 0.431226 | 5.2:-13592529 | MS.gene64800:intron |
| ACTCCAGCAGTGGGCATGTC+AGG | 0.434101 | 5.2:+13586362 | None:intergenic |
| CGTTTCTCCTTCTCCCGGGA+AGG | 0.438675 | 5.2:+13591787 | None:intergenic |
| CAATCGCGGCAAAATGTTGC+CGG | 0.441838 | 5.2:+13595137 | None:intergenic |
| CGAGACTCTGTCAGGTGTCC+TGG | 0.442445 | 5.2:-13583802 | MS.gene64800:CDS |
| TTTACTGTCTACAGTTGGTC+AGG | 0.443803 | 5.2:-13584492 | MS.gene64800:intron |
| TGCAAATGCTGCACAACAAA+TGG | 0.444033 | 5.2:-13582660 | MS.gene64800:CDS |
| AGTTAGTAAGGATAAATTGC+CGG | 0.449777 | 5.2:-13593058 | MS.gene64800:CDS |
| GTTGCCATGACCTTATTAGT+TGG | 0.450360 | 5.2:+13585827 | None:intergenic |
| AGAATACGGTTAGGGTTTAA+CGG | 0.452066 | 5.2:+13595576 | None:intergenic |
| GAAGAAGAGAGAATACGGTT+AGG | 0.455079 | 5.2:+13595567 | None:intergenic |
| TTCAAACTACCCTCGTGTAA+TGG | 0.463333 | 5.2:-13585864 | MS.gene64800:CDS |
| ACAGTGAAAGGCAGACGCTT+TGG | 0.463935 | 5.2:+13585122 | None:intergenic |
| GAAGAGTTCCTATTATCAAA+TGG | 0.465787 | 5.2:+13583432 | None:intergenic |
| TCATGTTCTCAGTCAGATAG+AGG | 0.467619 | 5.2:-13591610 | MS.gene64800:CDS |
| TCAGCATAATCTAGTCGATC+GGG | 0.469613 | 5.2:+13586293 | None:intergenic |
| TGAGAAATATGAACCAATCA+AGG | 0.471525 | 5.2:-13582314 | MS.gene64800:CDS |
| GTTCGAATCCTGCAACGAAT+CGG | 0.472854 | 5.2:+13595464 | None:intergenic |
| AAAGCATCTGCCGATGGATC+CGG | 0.476967 | 5.2:+13582394 | None:intergenic |
| TATCTTTACTTCTTTGAGAA+GGG | 0.481938 | 5.2:-13582490 | MS.gene64800:CDS |
| CTTCAAAGGATGCATGTCTT+CGG | 0.482111 | 5.2:-13583413 | MS.gene64800:CDS |
| ACGAATCGGAAAATGAAAAT+CGG | 0.486069 | 5.2:+13595478 | None:intergenic |
| GCAATCCATCAAGTAGAATT+GGG | 0.487567 | 5.2:+13591408 | None:intergenic |
| GAAGAGAAGTTCCTCGCCGC+CGG | 0.487633 | 5.2:-13595654 | MS.gene64800:CDS |
| TACACAGCTCTGCATTGATC+TGG | 0.488790 | 5.2:+13583232 | None:intergenic |
| GCAGGGGCCTTCCCGGGAGA+AGG | 0.490072 | 5.2:-13591794 | MS.gene64800:intron |
| CAGACCATCGAGACTCTGTC+AGG | 0.494213 | 5.2:-13583810 | MS.gene64800:CDS |
| TTTACCTGCTCAAGTACTCT+AGG | 0.496535 | 5.2:+13591552 | None:intergenic |
| ACTGATAAAGGGGCTTATCA+AGG | 0.497046 | 5.2:-13585651 | MS.gene64800:CDS |
| AATGAAGAGCATTACTGATC+CGG | 0.499744 | 5.2:+13582616 | None:intergenic |
| CTGAGAAAGAGTCCACGAAC+AGG | 0.501578 | 5.2:+13593096 | None:intergenic |
| GGCATTCAGAATCCTGTTCG+TGG | 0.501736 | 5.2:-13593108 | MS.gene64800:CDS |
| GATAGCTGTGACCTGTGCTC+TGG | 0.502526 | 5.2:+13583454 | None:intergenic |
| ATTCTACATGCACCGTGCAT+TGG | 0.505624 | 5.2:-13595607 | MS.gene64800:CDS |
| TTTAAAGAAGAAAACATAAG+AGG | 0.507523 | 5.2:+13585095 | None:intergenic |
| TGCGCGCATTTGATCAATTG+AGG | 0.507817 | 5.2:-13595236 | MS.gene64800:CDS |
| GTATCTTTACTTCTTTGAGA+AGG | 0.508035 | 5.2:-13582491 | MS.gene64800:CDS |
| TAATTAACTCAATTAGGCCC+TGG | 0.511873 | 5.2:+13582440 | None:intergenic |
| ACTGAAATGACCTCTTCATC+AGG | 0.513627 | 5.2:+13585614 | None:intergenic |
| TCCTTAAGAACATCCTTAGC+AGG | 0.514144 | 5.2:+13593150 | None:intergenic |
| GAATTGAAGAAGAGAGAATA+CGG | 0.514689 | 5.2:+13595562 | None:intergenic |
| TAGCAGCAACTGTAACTTGT+GGG | 0.515070 | 5.2:+13582464 | None:intergenic |
| ATTTGATCAATTGAGGAAGC+TGG | 0.517144 | 5.2:-13595229 | MS.gene64800:CDS |
| TTCTCGTTTCTCCTTCTCCC+GGG | 0.525927 | 5.2:+13591783 | None:intergenic |
| ACTTTAACTCACAAGGCCAC+AGG | 0.526213 | 5.2:-13583374 | MS.gene64800:CDS |
| GAATGAATTCTGTTGAAGTC+CGG | 0.528606 | 5.2:+13595626 | None:intergenic |
| GGAGAAGGAGAAACGAGAAA+AGG | 0.529242 | 5.2:-13591779 | MS.gene64800:CDS |
| TGAAAGCCTTTCCATTAACT+GGG | 0.530830 | 5.2:+13590476 | None:intergenic |
| TGAAATGCAAAGTGCAACTC+CGG | 0.533863 | 5.2:-13582413 | MS.gene64800:CDS |
| AGATTATGCTGATCAAGTCT+TGG | 0.535438 | 5.2:-13586282 | MS.gene64800:intron |
| AAATGAAAATCGGATCCAAA+AGG | 0.536245 | 5.2:+13595488 | None:intergenic |
| ATGTCATTATATTTCTCTAG+TGG | 0.538353 | 5.2:+13585905 | None:intergenic |
| AAGAGAAGTTCCTCGCCGCC+GGG | 0.539003 | 5.2:-13595653 | MS.gene64800:CDS |
| GATCATGATAACATGAAAGA+TGG | 0.539688 | 5.2:-13583181 | MS.gene64800:CDS |
| GTGAGGAAGCACATACTGAC+TGG | 0.539810 | 5.2:-13585149 | MS.gene64800:CDS |
| TCGTACTCAGAACCAATATC+CGG | 0.540147 | 5.2:+13593039 | None:intergenic |
| GCACATCAAGAGTTTGCAAA+TGG | 0.543783 | 5.2:+13591359 | None:intergenic |
| AGGGTAGTTTGAAAGCTTCA+AGG | 0.545666 | 5.2:+13585874 | None:intergenic |
| AAACAAAAGGGTGGTACAGT+TGG | 0.548365 | 5.2:-13582337 | MS.gene64800:CDS |
| GTTGATGCATCATCTCCAAA+AGG | 0.553449 | 5.2:+13584433 | None:intergenic |
| AGGTATCTCCTCTGTACAGT+AGG | 0.554384 | 5.2:-13593201 | MS.gene64800:CDS |
| GTTCCCTAACCTGAAGTTGA+GGG | 0.556360 | 5.2:+13591323 | None:intergenic |
| ATAAGAGGTGGAACAGTGAA+AGG | 0.559617 | 5.2:+13585110 | None:intergenic |
| ATCGAAGGAAGCTCCTGCTA+AGG | 0.560242 | 5.2:-13593163 | MS.gene64800:CDS |
| CGTGAATTGCAAAGATGAGT+TGG | 0.561375 | 5.2:-13591431 | MS.gene64800:CDS |
| CACAACTGCAATGCTAACTC+TGG | 0.562797 | 5.2:+13583777 | None:intergenic |
| TGATAATAGGAACTCTTCAA+AGG | 0.563619 | 5.2:-13583427 | MS.gene64800:CDS |
| AATGCAGCACGAGGTAGCAC+CGG | 0.565115 | 5.2:-13582635 | MS.gene64800:CDS |
| AAGTGCAACTCCGGATCCAT+CGG | 0.567190 | 5.2:-13582404 | MS.gene64800:CDS |
| GAAGCTGGAGATGTTCTTCG+AGG | 0.574256 | 5.2:-13595214 | MS.gene64800:CDS |
| AGGTAAAATTGAGGACAAGA+AGG | 0.574526 | 5.2:-13585960 | MS.gene64800:CDS |
| GTCCGGCGATCCCGGCGGCG+AGG | 0.575496 | 5.2:+13595643 | None:intergenic |
| GGCTTATCAAGGATTCTGAC+GGG | 0.575698 | 5.2:-13585640 | MS.gene64800:CDS |
| AGTCCTATTATGCCTTAAGC+GGG | 0.575988 | 5.2:-13582693 | MS.gene64800:CDS |
| CCTTATTAGTTGGAACGTCA+AGG | 0.577662 | 5.2:+13585837 | None:intergenic |
| CTCTGGCAAAGGTAAAATTG+AGG | 0.578328 | 5.2:-13585969 | MS.gene64800:CDS |
| ATCAGCATAATCTAGTCGAT+CGG | 0.578728 | 5.2:+13586292 | None:intergenic |
| GGCTGCAAATGACTGTGAGT+TGG | 0.580108 | 5.2:-13583657 | MS.gene64800:CDS |
| GCAATGCTAACTCTGGTGCC+AGG | 0.580206 | 5.2:+13583784 | None:intergenic |
| TGTCTTCGGTGTTGAGAACA+GGG | 0.583710 | 5.2:-13583399 | MS.gene64800:CDS |
| TTTGCAAATGGTACTCATCA+GGG | 0.584013 | 5.2:+13591371 | None:intergenic |
| CAACATCTTTGTACATCTCA+AGG | 0.584038 | 5.2:+13591580 | None:intergenic |
| CTTTAACTCACAAGGCCACA+GGG | 0.584542 | 5.2:-13583373 | MS.gene64800:CDS |
| TAAAGTTACAACTCCAGCAG+TGG | 0.587524 | 5.2:+13586352 | None:intergenic |
| AAAGAAGAAAACATAAGAGG+TGG | 0.590024 | 5.2:+13585098 | None:intergenic |
| CATTGTTTGAACTGATAAAG+GGG | 0.590196 | 5.2:-13585661 | MS.gene64800:CDS |
| TACGAGCTTGTCCAGCACGC+CGG | 0.590451 | 5.2:-13595156 | MS.gene64800:CDS |
| TTATGCTGCTTCAAGTGCAG+AGG | 0.591369 | 5.2:-13590451 | MS.gene64800:CDS |
| GGATATTGGTTCTGAGTACG+AGG | 0.594039 | 5.2:-13593037 | MS.gene64800:CDS |
| CGTTCCAACTAATAAGGTCA+TGG | 0.594538 | 5.2:-13585831 | MS.gene64800:CDS |
| ATCTGTATACATCAAATCGA+AGG | 0.594866 | 5.2:-13593178 | MS.gene64800:CDS |
| GCTTCCTAGAGTACTTGAGC+AGG | 0.596217 | 5.2:-13591556 | MS.gene64800:intron |
| CAGGGATACTTTAACTCACA+AGG | 0.597480 | 5.2:-13583381 | MS.gene64800:CDS |
| TACTATCCCAGTTAATGGAA+AGG | 0.598378 | 5.2:-13590482 | MS.gene64800:CDS |
| AATTGTTATACAGGTCATAG+AGG | 0.598940 | 5.2:-13586390 | MS.gene64800:intron |
| GAGTCCTATTATGCCTTAAG+CGG | 0.599450 | 5.2:-13582694 | MS.gene64800:CDS |
| GGGCTTATCAAGGATTCTGA+CGG | 0.602860 | 5.2:-13585641 | MS.gene64800:CDS |
| GACACCTGACAGAGTCTCGA+TGG | 0.603687 | 5.2:+13583806 | None:intergenic |
| TGACGGGACTCCTGATGAAG+AGG | 0.605204 | 5.2:-13585624 | MS.gene64800:intron |
| GTTACAGTTGCTGCTATCCA+GGG | 0.605864 | 5.2:-13582457 | MS.gene64800:CDS |
| AAATGAACAAACTTTGGGTG+CGG | 0.606382 | 5.2:-13592542 | MS.gene64800:CDS |
| AGTTCCCTAACCTGAAGTTG+AGG | 0.609828 | 5.2:+13591322 | None:intergenic |
| ATACCAGGATTCCAGAGCAC+AGG | 0.612388 | 5.2:-13583465 | MS.gene64800:intron |
| CAGAGTTCGTAGTATTTGTG+AGG | 0.614445 | 5.2:+13595375 | None:intergenic |
| ATTAAGCAATGCAATTGGCA+AGG | 0.614576 | 5.2:-13590391 | MS.gene64800:intron |
| CGATAATCGTGAATCGCGAG+TGG | 0.619576 | 5.2:+13595540 | None:intergenic |
| CTGTATATAGCGCATAGTAG+TGG | 0.620971 | 5.2:+13582366 | None:intergenic |
| CATGTTCTCAGTCAGATAGA+GGG | 0.621850 | 5.2:-13591609 | MS.gene64800:CDS |
| GCTAAGAAAGCATCTGCCGA+TGG | 0.622652 | 5.2:+13582388 | None:intergenic |
| ACGGAGGAGTTACCAATGCA+CGG | 0.624713 | 5.2:+13595595 | None:intergenic |
| AGGAGAAACGAGAAAAGGAG+AGG | 0.627935 | 5.2:-13591774 | MS.gene64800:CDS |
| TTCAGATCATTGAAACTGTG+AGG | 0.627976 | 5.2:-13585166 | MS.gene64800:intron |
| AAAGTTACAACTCCAGCAGT+GGG | 0.628281 | 5.2:+13586353 | None:intergenic |
| GGATGAAGATGATTTCAAAG+AGG | 0.628375 | 5.2:-13585416 | MS.gene64800:CDS |
| GTTGTGCTTGCAATGTGCTG+AGG | 0.641551 | 5.2:-13583760 | MS.gene64800:intron |
| GGGGTGGACATGAAGAGTGA+AGG | 0.643078 | 5.2:+13586313 | None:intergenic |
| ATAACATGAAAGATGGAGAG+AGG | 0.651839 | 5.2:-13583174 | MS.gene64800:intron |
| CAGTTGGTCAGGCAGTTGCA+AGG | 0.652495 | 5.2:-13584481 | MS.gene64800:CDS |
| TTCGAGGAAGAGACTCGTCG+TGG | 0.654957 | 5.2:-13595198 | MS.gene64800:CDS |
| AATAACACATACCTTGTCAG+AGG | 0.659815 | 5.2:+13585760 | None:intergenic |
| CCGGAGAAAATGATGCTCGA+CGG | 0.665622 | 5.2:-13595687 | None:intergenic |
| ATAGCAGCAACTGTAACTTG+TGG | 0.666553 | 5.2:+13582463 | None:intergenic |
| ACGCATTTCTACCTCTGACA+AGG | 0.688272 | 5.2:-13585771 | MS.gene64800:intron |
| GATATTGGTTCTGAGTACGA+GGG | 0.691815 | 5.2:-13593036 | MS.gene64800:CDS |
| TCTAGCACCACTTACAATCG+CGG | 0.693955 | 5.2:+13595123 | None:intergenic |
| CATAATCTAGTCGATCGGGG+TGG | 0.695269 | 5.2:+13586297 | None:intergenic |
| CAAATGGCAAATGCAGCACG+AGG | 0.695757 | 5.2:-13582644 | MS.gene64800:CDS |
| TTGAAGTCCGGCGATCCCGG+CGG | 0.697531 | 5.2:+13595638 | None:intergenic |
| CAGCATAATCTAGTCGATCG+GGG | 0.697857 | 5.2:+13586294 | None:intergenic |
| ATATTGGTTCTGAGTACGAG+GGG | 0.701758 | 5.2:-13593035 | MS.gene64800:intron |
| TCAAGGAATTCCATTACACG+AGG | 0.703879 | 5.2:+13585854 | None:intergenic |
| AGGAAGCACATACTGACTGG+AGG | 0.706279 | 5.2:-13585146 | MS.gene64800:CDS |
| GATCTTGTAGAGATGTGTCG+TGG | 0.708072 | 5.2:-13593129 | MS.gene64800:CDS |
| GAATTCAATAATCACCCCTG+TGG | 0.722096 | 5.2:+13583358 | None:intergenic |
| TTTAACTCACAAGGCCACAG+GGG | 0.727627 | 5.2:-13583372 | MS.gene64800:intron |
| ATACAGATCCTACTGTACAG+AGG | 0.740473 | 5.2:+13593193 | None:intergenic |
| CAAGGAATTCCATTACACGA+GGG | 0.748600 | 5.2:+13585855 | None:intergenic |
| ATACGGTTAGGGTTTAACGG+AGG | 0.775384 | 5.2:+13595579 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 13582309 | 13595700 | 13582309 | ID=MS.gene64800 |
| chr5.2 | mRNA | 13582309 | 13595700 | 13582309 | ID=MS.gene64800.t1;Parent=MS.gene64800 |
| chr5.2 | exon | 13595376 | 13595700 | 13595376 | ID=MS.gene64800.t1.exon1;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13595376 | 13595700 | 13595376 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13595138 | 13595261 | 13595138 | ID=MS.gene64800.t1.exon2;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13595138 | 13595261 | 13595138 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13593036 | 13593221 | 13593036 | ID=MS.gene64800.t1.exon3;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13593036 | 13593221 | 13593036 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13592530 | 13592617 | 13592530 | ID=MS.gene64800.t1.exon4;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13592530 | 13592617 | 13592530 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13591756 | 13591812 | 13591756 | ID=MS.gene64800.t1.exon5;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13591756 | 13591812 | 13591756 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13591557 | 13591646 | 13591557 | ID=MS.gene64800.t1.exon6;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13591557 | 13591646 | 13591557 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13591333 | 13591455 | 13591333 | ID=MS.gene64800.t1.exon7;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13591333 | 13591455 | 13591333 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13590392 | 13590526 | 13590392 | ID=MS.gene64800.t1.exon8;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13590392 | 13590526 | 13590392 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13586283 | 13586399 | 13586283 | ID=MS.gene64800.t1.exon9;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13586283 | 13586399 | 13586283 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13585772 | 13586011 | 13585772 | ID=MS.gene64800.t1.exon10;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13585772 | 13586011 | 13585772 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13585625 | 13585690 | 13585625 | ID=MS.gene64800.t1.exon11;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13585625 | 13585690 | 13585625 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13585351 | 13585440 | 13585351 | ID=MS.gene64800.t1.exon12;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13585351 | 13585440 | 13585351 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13585094 | 13585183 | 13585094 | ID=MS.gene64800.t1.exon13;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13585094 | 13585183 | 13585094 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13584399 | 13584500 | 13584399 | ID=MS.gene64800.t1.exon14;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13584399 | 13584500 | 13584399 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13583761 | 13583829 | 13583761 | ID=MS.gene64800.t1.exon15;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13583761 | 13583829 | 13583761 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13583598 | 13583678 | 13583598 | ID=MS.gene64800.t1.exon16;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13583598 | 13583678 | 13583598 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13583373 | 13583480 | 13583373 | ID=MS.gene64800.t1.exon17;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13583373 | 13583480 | 13583373 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13583175 | 13583278 | 13583175 | ID=MS.gene64800.t1.exon18;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13583175 | 13583278 | 13583175 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13582602 | 13582715 | 13582602 | ID=MS.gene64800.t1.exon19;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13582602 | 13582715 | 13582602 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| chr5.2 | exon | 13582309 | 13582513 | 13582309 | ID=MS.gene64800.t1.exon20;Parent=MS.gene64800.t1 |
| chr5.2 | CDS | 13582309 | 13582513 | 13582309 | ID=cds.MS.gene64800.t1;Parent=MS.gene64800.t1 |
| Gene Sequence |
| Protein sequence |
