Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65516.t1 | XP_024631074.1 | 96.2 | 662 | 25 | 0 | 1 | 662 | 98 | 759 | 0.00E+00 | 1181.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65516.t1 | Q0WPQ2 | 53.0 | 679 | 285 | 12 | 1 | 660 | 103 | 766 | 3.1e-172 | 606.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65516.t1 | A0A072VSP2 | 96.2 | 662 | 25 | 0 | 1 | 662 | 98 | 759 | 0.0e+00 | 1181.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene65516 | -0.801834 | 7.47E-49 | -1.69E-46 |
| MS.gene049171 | MS.gene65516 | -0.809113 | 2.22E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene65516 | -0.803519 | 3.35E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene65516 | -0.843947 | 1.02E-58 | -1.69E-46 |
| MS.gene050170 | MS.gene65516 | -0.819485 | 1.13E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene65516 | -0.804283 | 2.33E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene65516 | -0.815198 | 1.05E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene65516 | -0.807554 | 4.78E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene65516 | -0.816939 | 4.27E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene65516 | -0.819147 | 1.35E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene65516 | -0.819809 | 9.56E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene65516 | -0.807854 | 4.12E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene65516 | 0.803896 | 2.80E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene65516 | -0.814157 | 1.78E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene65516 | -0.803356 | 3.63E-49 | -1.69E-46 |
| MS.gene052015 | MS.gene65516 | 0.805615 | 1.23E-49 | -1.69E-46 |
| MS.gene05234 | MS.gene65516 | 0.819978 | 8.74E-53 | -1.69E-46 |
| MS.gene052482 | MS.gene65516 | -0.802297 | 6.00E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene65516 | -0.811799 | 5.84E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene65516 | -0.802125 | 6.51E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene65516 | -0.836251 | 1.04E-56 | -1.69E-46 |
| MS.gene052606 | MS.gene65516 | 0.808214 | 3.46E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene65516 | -0.843635 | 1.24E-58 | -1.69E-46 |
| MS.gene052825 | MS.gene65516 | -0.849063 | 4.11E-60 | -1.69E-46 |
| MS.gene053108 | MS.gene65516 | 0.819789 | 9.66E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene65516 | -0.84189 | 3.61E-58 | -1.69E-46 |
| MS.gene053421 | MS.gene65516 | 0.954492 | 2.62E-112 | -1.69E-46 |
| MS.gene053480 | MS.gene65516 | -0.808938 | 2.42E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene65516 | -0.811012 | 8.66E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene65516 | -0.825457 | 4.64E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene65516 | 0.830017 | 3.72E-55 | -1.69E-46 |
| MS.gene05470 | MS.gene65516 | -0.822357 | 2.47E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene65516 | -0.825301 | 5.05E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene65516 | -0.831693 | 1.44E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene65516 | -0.80451 | 2.09E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene65516 | -0.815782 | 7.75E-52 | -1.69E-46 |
| MS.gene056040 | MS.gene65516 | -0.804223 | 2.39E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene65516 | -0.80267 | 5.03E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene65516 | -0.819607 | 1.06E-52 | -1.69E-46 |
| MS.gene056618 | MS.gene65516 | 0.804027 | 2.63E-49 | -1.69E-46 |
| MS.gene056647 | MS.gene65516 | 0.815395 | 9.45E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene65516 | -0.801952 | 7.06E-49 | -1.69E-46 |
| MS.gene057173 | MS.gene65516 | 0.825003 | 5.94E-54 | -1.69E-46 |
| MS.gene057271 | MS.gene65516 | 0.808676 | 2.75E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene65516 | -0.808777 | 2.62E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene65516 | -0.819055 | 1.42E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene65516 | -0.85077 | 1.37E-60 | -1.69E-46 |
| MS.gene058171 | MS.gene65516 | 0.805592 | 1.24E-49 | -1.69E-46 |
| MS.gene058173 | MS.gene65516 | 0.801723 | 7.87E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene65516 | 0.805229 | 1.48E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene65516 | -0.823445 | 1.38E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene65516 | -0.815634 | 8.36E-52 | -1.69E-46 |
| MS.gene058838 | MS.gene65516 | -0.811842 | 5.72E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene65516 | -0.826546 | 2.56E-54 | -1.69E-46 |
| MS.gene059303 | MS.gene65516 | -0.806943 | 6.44E-50 | -1.69E-46 |
| MS.gene05960 | MS.gene65516 | 0.804371 | 2.23E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene65516 | -0.800581 | 1.35E-48 | -1.69E-46 |
| MS.gene059718 | MS.gene65516 | -0.800177 | 1.63E-48 | -1.69E-46 |
| MS.gene05995 | MS.gene65516 | -0.803997 | 2.67E-49 | -1.69E-46 |
| MS.gene05996 | MS.gene65516 | -0.809539 | 1.80E-50 | -1.69E-46 |
| MS.gene060187 | MS.gene65516 | 0.806341 | 8.62E-50 | -1.69E-46 |
| MS.gene060595 | MS.gene65516 | 0.812208 | 4.76E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene65516 | -0.810012 | 1.42E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene65516 | -0.832038 | 1.19E-55 | -1.69E-46 |
| MS.gene061226 | MS.gene65516 | 0.811793 | 5.86E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 171 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATGCATATTGGGTTTAA+TGG | 0.188176 | 1.4:+28475784 | MS.gene65516:CDS |
| GTTAAACTGTCGGAAACTTT+AGG | 0.198346 | 1.4:+28473663 | MS.gene65516:CDS |
| CCCCTTTGAAGTTATTCTTT+TGG | 0.208877 | 1.4:+28475639 | MS.gene65516:CDS |
| ATGGCTTTATGCAAGGGTTT+TGG | 0.236524 | 1.4:+28474455 | MS.gene65516:CDS |
| TTGTTTAATAGCTGGACTTA+TGG | 0.240419 | 1.4:+28473369 | None:intergenic |
| GCAACTTATGAGAGAGAAAT+TGG | 0.272205 | 1.4:+28474100 | MS.gene65516:CDS |
| TAACAATACATCCTAGTTTC+TGG | 0.278898 | 1.4:-28475561 | None:intergenic |
| TCTGAACTCTCCCCTGGTTC+GGG | 0.291012 | 1.4:-28475448 | None:intergenic |
| TTAAACTGTCGGAAACTTTA+GGG | 0.291922 | 1.4:+28473664 | MS.gene65516:CDS |
| CTTAACTTGCCTGATTTAGA+TGG | 0.294640 | 1.4:+28475664 | MS.gene65516:CDS |
| GATTCTTGTGTTTCAAGTTT+TGG | 0.305051 | 1.4:+28474595 | MS.gene65516:CDS |
| GTTACTTCAGGGAGGCTTGC+AGG | 0.306598 | 1.4:+28474746 | MS.gene65516:CDS |
| CTCTGAACTCTCCCCTGGTT+CGG | 0.307952 | 1.4:-28475449 | None:intergenic |
| GCCTATCGCTGTTGCTTTAA+CGG | 0.315525 | 1.4:+28475732 | MS.gene65516:CDS |
| CCTTTGGAGATGAAATGTTT+TGG | 0.321337 | 1.4:+28474389 | MS.gene65516:CDS |
| CTGTTACGCGATACTTGTTT+TGG | 0.339387 | 1.4:+28473965 | MS.gene65516:CDS |
| CAGCATGGCCAACAAGATTA+AGG | 0.340276 | 1.4:-28475609 | None:intergenic |
| CAAAACAAGTATCGCGTAAC+AGG | 0.352897 | 1.4:-28473964 | None:intergenic |
| AGCTTGCATCGCCAAGTCTA+TGG | 0.355095 | 1.4:+28474436 | MS.gene65516:CDS |
| ATTGTTACATCTGTTTCTTC+CGG | 0.360494 | 1.4:+28475577 | MS.gene65516:CDS |
| AGGCCAATGCATTCAGTTAT+GGG | 0.362686 | 1.4:+28474221 | MS.gene65516:CDS |
| TCAGAGACCTCAGTTACTTC+AGG | 0.363567 | 1.4:+28474734 | MS.gene65516:CDS |
| TCTTTGCCTAACTATATTAT+CGG | 0.368544 | 1.4:+28474500 | MS.gene65516:CDS |
| GCGAATCCTTGCAACAGAAT+TGG | 0.368969 | 1.4:-28475820 | None:intergenic |
| TTCGAATGCCTTAATCTTGT+TGG | 0.377583 | 1.4:+28475601 | MS.gene65516:CDS |
| TATTAAAGTTGTTGCTGATC+AGG | 0.379034 | 1.4:+28474037 | MS.gene65516:CDS |
| GATTTAAGGTTGAGGTTGAT+AGG | 0.383654 | 1.4:+28474477 | MS.gene65516:CDS |
| CTTGCAACAGAATTGGCTTT+CGG | 0.388691 | 1.4:-28475813 | None:intergenic |
| TGAGGAAAGCCTCTAGCATT+TGG | 0.394008 | 1.4:-28475370 | None:intergenic |
| CTTAATCTTGTTGGCCATGC+TGG | 0.394439 | 1.4:+28475610 | MS.gene65516:CDS |
| AACTGATGACCCTTGCTCTT+CGG | 0.397404 | 1.4:+28475392 | MS.gene65516:CDS |
| TGGAGGTGGAAGATTTCCTT+TGG | 0.397483 | 1.4:+28474373 | MS.gene65516:CDS |
| GGAAGTTCAAAAGCCGTAAC+TGG | 0.402042 | 1.4:+28475710 | MS.gene65516:CDS |
| CATCTAAATCAGGCAAGTTA+AGG | 0.412834 | 1.4:-28475663 | None:intergenic |
| AAGGCCAATGCATTCAGTTA+TGG | 0.414233 | 1.4:+28474220 | MS.gene65516:CDS |
| CTTGAAAGTCCTCACTGCAT+TGG | 0.415305 | 1.4:+28473428 | MS.gene65516:CDS |
| AAGCGAAAGGCGAGGGAGCT+TGG | 0.417170 | 1.4:+28473528 | MS.gene65516:CDS |
| ATAGGACCTAATTTCCCTTC+AGG | 0.424148 | 1.4:-28475861 | None:intergenic |
| CAGAGGTCTGCAAGTCTTGT+TGG | 0.425682 | 1.4:+28475495 | MS.gene65516:CDS |
| TCCAAAAGAATAACTTCAAA+GGG | 0.428364 | 1.4:-28475640 | None:intergenic |
| GATCAAAGTGATGAGGGTTA+TGG | 0.428611 | 1.4:-28473466 | None:intergenic |
| ACTTCAAATCCATCTAAATC+AGG | 0.429557 | 1.4:-28475673 | None:intergenic |
| AAGATTAAGGCATTCGAATC+CGG | 0.430168 | 1.4:-28475596 | None:intergenic |
| GAAGGATGTGTACGAGTGAC+CGG | 0.443598 | 1.4:+28474768 | MS.gene65516:CDS |
| AAGCTCAGAAGAAGAATTGC+GGG | 0.444376 | 1.4:+28475756 | MS.gene65516:CDS |
| CCCTATGCTTCTTAAAGTAA+AGG | 0.446192 | 1.4:+28473488 | MS.gene65516:CDS |
| GGCATTCGGATCGCAGCAAC+CGG | 0.448019 | 1.4:-28473891 | None:intergenic |
| ATGCTATGGACAATTCAGAT+AGG | 0.455663 | 1.4:+28474345 | MS.gene65516:CDS |
| CCCTTGACTCTTACAACATC+CGG | 0.458403 | 1.4:-28473792 | None:intergenic |
| TTCTATACCGATCACTGATC+CGG | 0.461024 | 1.4:+28473773 | MS.gene65516:CDS |
| CTGCTTGCTGCTGCGAGTAG+TGG | 0.466733 | 1.4:+28473849 | MS.gene65516:CDS |
| TTGAAGTTACCGCAAGGATC+CGG | 0.468641 | 1.4:+28475689 | MS.gene65516:CDS |
| AACCTCACTCATGAATTGAA+TGG | 0.471461 | 1.4:+28473735 | MS.gene65516:CDS |
| GCGAAATCGAGCATTGCAAC+AGG | 0.472193 | 1.4:+28474127 | MS.gene65516:CDS |
| CAACACTAAGCATTGGCATT+CGG | 0.473530 | 1.4:-28473905 | None:intergenic |
| TACGAGTGACCGGGCATTCG+AGG | 0.475000 | 1.4:+28474778 | MS.gene65516:CDS |
| TCAGATAGGGACGGTGGAGG+TGG | 0.475127 | 1.4:+28474359 | MS.gene65516:CDS |
| TTTCAGAAAGTCATGAGTAA+TGG | 0.476424 | 1.4:+28474191 | MS.gene65516:CDS |
| CTAGTGAAGAGGCTAGATCT+TGG | 0.479339 | 1.4:+28473994 | MS.gene65516:CDS |
| GAAAGTCATGAGTAATGGAA+TGG | 0.480686 | 1.4:+28474196 | MS.gene65516:CDS |
| CTTAGTGTTGGCGATTTCAA+AGG | 0.483799 | 1.4:+28473918 | MS.gene65516:CDS |
| TGTAAGAGTCAAGGGAGATA+AGG | 0.484906 | 1.4:+28473800 | MS.gene65516:CDS |
| GAGCATTGCAACAGGAGAAA+AGG | 0.488985 | 1.4:+28474135 | MS.gene65516:CDS |
| TCTATTAATATCGTCGTTGT+CGG | 0.489246 | 1.4:-28475518 | None:intergenic |
| CAGAAGTTTCTCCAGAAACT+AGG | 0.490213 | 1.4:+28475550 | MS.gene65516:CDS |
| TCAAACTTTCCTCGAATGCC+CGG | 0.492186 | 1.4:-28474787 | None:intergenic |
| ACCTCACTCATGAATTGAAT+GGG | 0.492396 | 1.4:+28473736 | MS.gene65516:CDS |
| CAACAGCGATAGGCCAGTTA+CGG | 0.493707 | 1.4:-28475723 | None:intergenic |
| TTAGTGTTGGCGATTTCAAA+GGG | 0.496178 | 1.4:+28473919 | MS.gene65516:CDS |
| GCGGTAACCATCCCCGAACC+AGG | 0.502417 | 1.4:+28475436 | MS.gene65516:CDS |
| GTCCAAAAGAATAACTTCAA+AGG | 0.504471 | 1.4:-28475641 | None:intergenic |
| ATAATGAAACAGAATGAAGC+TGG | 0.506215 | 1.4:+28473567 | MS.gene65516:CDS |
| ACTTGATAGATGGTAACAAT+GGG | 0.506406 | 1.4:+28474567 | MS.gene65516:CDS |
| TAACAGGCCTCCGTTACCTC+AGG | 0.507753 | 1.4:-28473948 | None:intergenic |
| AGTGGAGTTTCTGTTGATGC+AGG | 0.512394 | 1.4:+28473867 | MS.gene65516:CDS |
| CAAGTCTATGGCTTTATGCA+AGG | 0.514591 | 1.4:+28474448 | MS.gene65516:CDS |
| CCTTTACTTTAAGAAGCATA+GGG | 0.517469 | 1.4:-28473488 | None:intergenic |
| CAGAGACCTCAGTTACTTCA+GGG | 0.520849 | 1.4:+28474735 | MS.gene65516:CDS |
| TACTACCTTGGTTAAACTGT+CGG | 0.524792 | 1.4:+28473653 | MS.gene65516:CDS |
| CAAGATCTAGCCTCTTCACT+AGG | 0.525819 | 1.4:-28473993 | None:intergenic |
| GGAGAAAAGGAACGCTATGA+TGG | 0.526316 | 1.4:+28474148 | MS.gene65516:CDS |
| ACCTTTACTTTAAGAAGCAT+AGG | 0.527347 | 1.4:-28473489 | None:intergenic |
| AACTTGATAGATGGTAACAA+TGG | 0.531282 | 1.4:+28474566 | MS.gene65516:CDS |
| AAAGTCATGAGTAATGGAAT+GGG | 0.532334 | 1.4:+28474197 | MS.gene65516:CDS |
| AGTTTCTGTTGATGCAGGAC+CGG | 0.541642 | 1.4:+28473872 | MS.gene65516:CDS |
| AAGTCTATGGCTTTATGCAA+GGG | 0.542582 | 1.4:+28474449 | MS.gene65516:CDS |
| GATGCCTAATGTTGATAAAA+CGG | 0.545342 | 1.4:+28473707 | MS.gene65516:CDS |
| ACTCTCCCCTGGTTCGGGGA+TGG | 0.547088 | 1.4:-28475443 | None:intergenic |
| TTGAACATGGATATGCAACT+TGG | 0.548877 | 1.4:+28474642 | MS.gene65516:CDS |
| GAAACTTATTGTGGATTCGA+TGG | 0.549832 | 1.4:+28474286 | MS.gene65516:CDS |
| GATCAAAATTCCTTGTTCAG+AGG | 0.550379 | 1.4:+28475478 | MS.gene65516:CDS |
| GATGACTCTGAACTCTCCCC+TGG | 0.550748 | 1.4:-28475454 | None:intergenic |
| TCGTCACCGATAATATAGTT+AGG | 0.551741 | 1.4:-28474506 | None:intergenic |
| TGTTGCTGATCAGGTAGCCG+TGG | 0.554230 | 1.4:+28474046 | MS.gene65516:CDS |
| AAATCGCCAACACTAAGCAT+TGG | 0.554872 | 1.4:-28473912 | None:intergenic |
| GAACTTGATGAATGATGCTA+TGG | 0.555490 | 1.4:+28474331 | MS.gene65516:CDS |
| CGAAAGCCAATTCTGTTGCA+AGG | 0.555618 | 1.4:+28475814 | MS.gene65516:CDS |
| TCCCATTCAATTCATGAGTG+AGG | 0.557270 | 1.4:-28473737 | None:intergenic |
| TTGCGATTCTTCTAGAATTG+CGG | 0.559822 | 1.4:-28474081 | None:intergenic |
| AGAGTTCTTGCTGAAGCGAA+AGG | 0.561096 | 1.4:+28473515 | MS.gene65516:CDS |
| CAGCATGATTTGAAATGTGT+GGG | 0.561684 | 1.4:-28473394 | None:intergenic |
| CCGGATGTTGTAAGAGTCAA+GGG | 0.561701 | 1.4:+28473792 | MS.gene65516:CDS |
| TGCTATGGACAATTCAGATA+GGG | 0.564858 | 1.4:+28474346 | MS.gene65516:CDS |
| TTATTGTGGATTCGATGGTA+AGG | 0.567940 | 1.4:+28474291 | MS.gene65516:CDS |
| ATTCTGTTGCAAGGATTCGC+CGG | 0.568420 | 1.4:+28475823 | MS.gene65516:CDS |
| GCCGTTAAAGCAACAGCGAT+AGG | 0.568669 | 1.4:-28475733 | None:intergenic |
| CCAAAACATTTCATCTCCAA+AGG | 0.569295 | 1.4:-28474389 | None:intergenic |
| GAATGAACAGAAACTTATTG+TGG | 0.569510 | 1.4:+28474277 | MS.gene65516:CDS |
| ATATTATCGGTGACGAGAAG+AGG | 0.570583 | 1.4:+28474513 | MS.gene65516:CDS |
| ATGGTTAGGAACTTGATAGA+TGG | 0.571670 | 1.4:+28474557 | MS.gene65516:CDS |
| CGAATGCCAATGCTTAGTGT+TGG | 0.574855 | 1.4:+28473906 | MS.gene65516:CDS |
| CATATGCAAGAAGATAATCC+AGG | 0.578098 | 1.4:+28474817 | MS.gene65516:CDS |
| CTTGCATAAAGCCATAGACT+TGG | 0.578350 | 1.4:-28474447 | None:intergenic |
| TCCGGATGTTGTAAGAGTCA+AGG | 0.578653 | 1.4:+28473791 | MS.gene65516:CDS |
| TTTGGTACTTCCTAGTGAAG+AGG | 0.580067 | 1.4:+28473983 | MS.gene65516:CDS |
| GAACGCTATGATGGCGAGTG+AGG | 0.581349 | 1.4:+28474157 | MS.gene65516:CDS |
| TGTTATTGGCAGTCAATGAA+AGG | 0.581485 | 1.4:+28475331 | MS.gene65516:intron |
| CTTGCTGAAGCGAAAGGCGA+GGG | 0.583282 | 1.4:+28473521 | MS.gene65516:CDS |
| CTTCAGGGAGGCTTGCAGGA+AGG | 0.584384 | 1.4:+28474750 | MS.gene65516:CDS |
| ACATCACCGTTAGACGAGCT+TGG | 0.587602 | 1.4:-28474668 | None:intergenic |
| CGGAATCTGGAAGTCGAGGA+AGG | 0.587888 | 1.4:+28474618 | MS.gene65516:CDS |
| AATTCAGATAGGGACGGTGG+AGG | 0.588433 | 1.4:+28474356 | MS.gene65516:CDS |
| CATAGGGATCAAAGTGATGA+GGG | 0.588741 | 1.4:-28473472 | None:intergenic |
| AGGGAGCTTGGAATTGAGTA+CGG | 0.594494 | 1.4:+28473540 | MS.gene65516:CDS |
| AATCCCATAACTGAATGCAT+TGG | 0.595120 | 1.4:-28474224 | None:intergenic |
| AAGGATGTGTACGAGTGACC+GGG | 0.595446 | 1.4:+28474769 | MS.gene65516:CDS |
| GACTTGCAGACCTCTGAACA+AGG | 0.597590 | 1.4:-28475488 | None:intergenic |
| TATTATCGGTGACGAGAAGA+GGG | 0.598459 | 1.4:+28474514 | MS.gene65516:CDS |
| CAAGCTCAGAAGAAGAATTG+CGG | 0.599403 | 1.4:+28475755 | MS.gene65516:CDS |
| TTTGAACTTCCGGATCCTTG+CGG | 0.601307 | 1.4:-28475698 | None:intergenic |
| CAAAGGGGCATGCACCAGCA+TGG | 0.602581 | 1.4:-28475624 | None:intergenic |
| CGGTAACCATCCCCGAACCA+GGG | 0.604626 | 1.4:+28475437 | MS.gene65516:CDS |
| GTAGTTGAAACCGAAGAGCA+AGG | 0.606603 | 1.4:-28475402 | None:intergenic |
| AGAGCAAGGGTCATCAGTTG+AGG | 0.607034 | 1.4:-28475388 | None:intergenic |
| ACAACATCCGGATCAGTGAT+CGG | 0.610257 | 1.4:-28473780 | None:intergenic |
| AGTGTTGGCGATTTCAAAGG+GGG | 0.610884 | 1.4:+28473921 | MS.gene65516:CDS |
| GTTGCTGATCAGGTAGCCGT+GGG | 0.610984 | 1.4:+28474047 | MS.gene65516:CDS |
| TTGGCGGAATCTGGAAGTCG+AGG | 0.612913 | 1.4:+28474614 | MS.gene65516:CDS |
| CTGAACTCTCCCCTGGTTCG+GGG | 0.615088 | 1.4:-28475447 | None:intergenic |
| GCATAGGGATCAAAGTGATG+AGG | 0.615167 | 1.4:-28473473 | None:intergenic |
| TCTTGCTGAAGCGAAAGGCG+AGG | 0.616326 | 1.4:+28473520 | MS.gene65516:CDS |
| TAGTTGAAACCGAAGAGCAA+GGG | 0.619553 | 1.4:-28475401 | None:intergenic |
| GTGCATGTTAGATTTGACAT+AGG | 0.621016 | 1.4:+28474689 | MS.gene65516:CDS |
| GGGGACGCCTGAGGTAACGG+AGG | 0.625733 | 1.4:+28473941 | MS.gene65516:CDS |
| AGTCGAGGAAGGATTGAACA+TGG | 0.630620 | 1.4:+28474629 | MS.gene65516:CDS |
| TGGAGACCAAGCTCGTCTAA+CGG | 0.635163 | 1.4:+28474662 | MS.gene65516:CDS |
| TCACTCATGAATTGAATGGG+AGG | 0.638853 | 1.4:+28473739 | MS.gene65516:CDS |
| ACTTATGAGAGAGAAATTGG+AGG | 0.641195 | 1.4:+28474103 | MS.gene65516:CDS |
| TCAGCATGATTTGAAATGTG+TGG | 0.647150 | 1.4:-28473395 | None:intergenic |
| GGTAACCATCCCCGAACCAG+GGG | 0.647398 | 1.4:+28475438 | MS.gene65516:CDS |
| GATTCGATGGTAAGGACAAG+CGG | 0.650665 | 1.4:+28474299 | MS.gene65516:CDS |
| GACAATTCAGATAGGGACGG+TGG | 0.651579 | 1.4:+28474353 | MS.gene65516:CDS |
| ATGGATTTGAAGTTACCGCA+AGG | 0.658657 | 1.4:+28475683 | MS.gene65516:CDS |
| TCATGAGTAATGGAATGGGA+AGG | 0.660080 | 1.4:+28474201 | MS.gene65516:CDS |
| GATGGCGAGTGAGGCTAGAG+CGG | 0.664178 | 1.4:+28474166 | MS.gene65516:CDS |
| TGTTCAGTACCAAATGCTAG+AGG | 0.667794 | 1.4:+28475361 | MS.gene65516:CDS |
| GGTTGCAGAACTGTGCTGTG+TGG | 0.669623 | 1.4:+28473685 | MS.gene65516:CDS |
| AGTTTCCGACAGTTTAACCA+AGG | 0.671343 | 1.4:-28473658 | None:intergenic |
| TTGATAGATGGTAACAATGG+GGG | 0.671786 | 1.4:+28474569 | MS.gene65516:CDS |
| AAGCCTCCCTGAAGTAACTG+AGG | 0.673026 | 1.4:-28474741 | None:intergenic |
| ATGGACAATTCAGATAGGGA+CGG | 0.674602 | 1.4:+28474350 | MS.gene65516:CDS |
| TCAACTACGCTGTTCTACCG+CGG | 0.678877 | 1.4:+28475417 | MS.gene65516:CDS |
| GTGTTGGCGATTTCAAAGGG+GGG | 0.681741 | 1.4:+28473922 | MS.gene65516:CDS |
| TAGTGTTGGCGATTTCAAAG+GGG | 0.690768 | 1.4:+28473920 | MS.gene65516:CDS |
| TGCGGCATGAGAAAGACCCA+CGG | 0.697860 | 1.4:-28474063 | None:intergenic |
| TGGTTCGGGGATGGTTACCG+CGG | 0.700590 | 1.4:-28475434 | None:intergenic |
| AGACCTCAGTTACTTCAGGG+AGG | 0.704562 | 1.4:+28474738 | MS.gene65516:CDS |
| CTTGATAGATGGTAACAATG+GGG | 0.715045 | 1.4:+28474568 | MS.gene65516:CDS |
| CCAAAAGAATAACTTCAAAG+GGG | 0.718508 | 1.4:-28475639 | None:intergenic |
| CACATGAAACCAATGCAGTG+AGG | 0.730416 | 1.4:-28473437 | None:intergenic |
| AGCATGATTTGAAATGTGTG+GGG | 0.747887 | 1.4:-28473393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACAAATTTGAAAAATA+TGG | - | chr1.4:28475203-28475222 | None:intergenic | 10.0% |
| !! | TTATTGACATTATTCATTAA+AGG | + | chr1.4:28474901-28474920 | MS.gene65516:intron | 15.0% |
| !! | ATGTCAATAAAGATGAAAAT+CGG | - | chr1.4:28474891-28474910 | None:intergenic | 20.0% |
| !!! | AAAATTGTGATAGAACATTT+TGG | + | chr1.4:28474949-28474968 | MS.gene65516:intron | 20.0% |
| ! | ATTCAATTCATAATGTCTCT+AGG | + | chr1.4:28475167-28475186 | MS.gene65516:intron | 25.0% |
| ! | CCAATAACATACAAAATCAA+TGG | - | chr1.4:28475320-28475339 | None:intergenic | 25.0% |
| ! | GTAGTTAGAACTATCAAATT+AGG | + | chr1.4:28475263-28475282 | MS.gene65516:intron | 25.0% |
| ! | TCCAAAAGAATAACTTCAAA+GGG | - | chr1.4:28475643-28475662 | None:intergenic | 25.0% |
| ! | TCTTTGCCTAACTATATTAT+CGG | + | chr1.4:28474500-28474519 | MS.gene65516:CDS | 25.0% |
| ! | TTCAATTCATAATGTCTCTA+GGG | + | chr1.4:28475168-28475187 | MS.gene65516:intron | 25.0% |
| !! | AGAACTTGAAAATTTTGAAC+TGG | - | chr1.4:28474978-28474997 | None:intergenic | 25.0% |
| !!! | CCATTGATTTTGTATGTTAT+TGG | + | chr1.4:28475317-28475336 | MS.gene65516:intron | 25.0% |
| AACTTGATAGATGGTAACAA+TGG | + | chr1.4:28474566-28474585 | MS.gene65516:CDS | 30.0% | |
| AATCATTCATTGGAATTTCG+TGG | - | chr1.4:28475229-28475248 | None:intergenic | 30.0% | |
| ACTTCAAATCCATCTAAATC+AGG | - | chr1.4:28475676-28475695 | None:intergenic | 30.0% | |
| ACTTGATAGATGGTAACAAT+GGG | + | chr1.4:28474567-28474586 | MS.gene65516:CDS | 30.0% | |
| ATAATGAAACAGAATGAAGC+TGG | + | chr1.4:28473567-28473586 | MS.gene65516:CDS | 30.0% | |
| ATAGCACACTAATCATTCAT+TGG | - | chr1.4:28475239-28475258 | None:intergenic | 30.0% | |
| CAAATGTTATATAGCTTACC+TGG | - | chr1.4:28474838-28474857 | None:intergenic | 30.0% | |
| CCAAAAGAATAACTTCAAAG+GGG | - | chr1.4:28475642-28475661 | None:intergenic | 30.0% | |
| GAATGAACAGAAACTTATTG+TGG | + | chr1.4:28474277-28474296 | MS.gene65516:CDS | 30.0% | |
| GGGAAAAATGTATGCATATT+GGG | + | chr1.4:28475776-28475795 | MS.gene65516:CDS | 30.0% | |
| GTCCAAAAGAATAACTTCAA+AGG | - | chr1.4:28475644-28475663 | None:intergenic | 30.0% | |
| TAACAATACATCCTAGTTTC+TGG | - | chr1.4:28475564-28475583 | None:intergenic | 30.0% | |
| TATTAAAGTTGTTGCTGATC+AGG | + | chr1.4:28474037-28474056 | MS.gene65516:CDS | 30.0% | |
| TCAATTCATAATGTCTCTAG+GGG | + | chr1.4:28475169-28475188 | MS.gene65516:intron | 30.0% | |
| TCTATTAATATCGTCGTTGT+CGG | - | chr1.4:28475521-28475540 | None:intergenic | 30.0% | |
| TGTATGCATATTGGGTTTAA+TGG | + | chr1.4:28475784-28475803 | MS.gene65516:CDS | 30.0% | |
| TTAAACTGTCGGAAACTTTA+GGG | + | chr1.4:28473664-28473683 | MS.gene65516:CDS | 30.0% | |
| TTTCAGAAAGTCATGAGTAA+TGG | + | chr1.4:28474191-28474210 | MS.gene65516:CDS | 30.0% | |
| ! | AAAGTCATGAGTAATGGAAT+GGG | + | chr1.4:28474197-28474216 | MS.gene65516:CDS | 30.0% |
| ! | ACCTTTACTTTAAGAAGCAT+AGG | - | chr1.4:28473492-28473511 | None:intergenic | 30.0% |
| ! | ATTGTTACATCTGTTTCTTC+CGG | + | chr1.4:28475577-28475596 | MS.gene65516:CDS | 30.0% |
| ! | CCTTTACTTTAAGAAGCATA+GGG | - | chr1.4:28473491-28473510 | None:intergenic | 30.0% |
| ! | GATGCCTAATGTTGATAAAA+CGG | + | chr1.4:28473707-28473726 | MS.gene65516:CDS | 30.0% |
| ! | TGAGATTTTGTATACTACCT+TGG | + | chr1.4:28473641-28473660 | MS.gene65516:CDS | 30.0% |
| !!! | AATTTCCCTTCAGGATTTTT+TGG | - | chr1.4:28475855-28475874 | None:intergenic | 30.0% |
| !!! | GATTCTTGTGTTTCAAGTTT+TGG | + | chr1.4:28474595-28474614 | MS.gene65516:CDS | 30.0% |
| AACCTCACTCATGAATTGAA+TGG | + | chr1.4:28473735-28473754 | MS.gene65516:CDS | 35.0% | |
| AATCCCATAACTGAATGCAT+TGG | - | chr1.4:28474227-28474246 | None:intergenic | 35.0% | |
| ACCTCACTCATGAATTGAAT+GGG | + | chr1.4:28473736-28473755 | MS.gene65516:CDS | 35.0% | |
| ACTTATGAGAGAGAAATTGG+AGG | + | chr1.4:28474103-28474122 | MS.gene65516:CDS | 35.0% | |
| AGAACTCCAAAAAATCCTGA+AGG | + | chr1.4:28475846-28475865 | MS.gene65516:CDS | 35.0% | |
| ATGCTATGGACAATTCAGAT+AGG | + | chr1.4:28474345-28474364 | MS.gene65516:CDS | 35.0% | |
| ATGGTTAGGAACTTGATAGA+TGG | + | chr1.4:28474557-28474576 | MS.gene65516:CDS | 35.0% | |
| CAATTCATAATGTCTCTAGG+GGG | + | chr1.4:28475170-28475189 | MS.gene65516:intron | 35.0% | |
| CATATGCAAGAAGATAATCC+AGG | + | chr1.4:28474817-28474836 | MS.gene65516:CDS | 35.0% | |
| CATCTAAATCAGGCAAGTTA+AGG | - | chr1.4:28475666-28475685 | None:intergenic | 35.0% | |
| CCAAAACATTTCATCTCCAA+AGG | - | chr1.4:28474392-28474411 | None:intergenic | 35.0% | |
| CCCTATGCTTCTTAAAGTAA+AGG | + | chr1.4:28473488-28473507 | MS.gene65516:CDS | 35.0% | |
| CGGGAAAAATGTATGCATAT+TGG | + | chr1.4:28475775-28475794 | MS.gene65516:CDS | 35.0% | |
| CTTGATAGATGGTAACAATG+GGG | + | chr1.4:28474568-28474587 | MS.gene65516:CDS | 35.0% | |
| GAAACTTATTGTGGATTCGA+TGG | + | chr1.4:28474286-28474305 | MS.gene65516:CDS | 35.0% | |
| GAACTCCAAAAAATCCTGAA+GGG | + | chr1.4:28475847-28475866 | MS.gene65516:CDS | 35.0% | |
| GAACTTGATGAATGATGCTA+TGG | + | chr1.4:28474331-28474350 | MS.gene65516:CDS | 35.0% | |
| GATCAAAATTCCTTGTTCAG+AGG | + | chr1.4:28475478-28475497 | MS.gene65516:CDS | 35.0% | |
| GCAACTTATGAGAGAGAAAT+TGG | + | chr1.4:28474100-28474119 | MS.gene65516:CDS | 35.0% | |
| GCACGTATTGAATCAAGTAT+CGG | - | chr1.4:28475086-28475105 | None:intergenic | 35.0% | |
| GTGCATGTTAGATTTGACAT+AGG | + | chr1.4:28474689-28474708 | MS.gene65516:CDS | 35.0% | |
| GTTAAACTGTCGGAAACTTT+AGG | + | chr1.4:28473663-28473682 | MS.gene65516:CDS | 35.0% | |
| TACTACCTTGGTTAAACTGT+CGG | + | chr1.4:28473653-28473672 | MS.gene65516:CDS | 35.0% | |
| TCGTCACCGATAATATAGTT+AGG | - | chr1.4:28474509-28474528 | None:intergenic | 35.0% | |
| TGCTATGGACAATTCAGATA+GGG | + | chr1.4:28474346-28474365 | MS.gene65516:CDS | 35.0% | |
| TGTTATTGGCAGTCAATGAA+AGG | + | chr1.4:28475331-28475350 | MS.gene65516:intron | 35.0% | |
| TTATTGTGGATTCGATGGTA+AGG | + | chr1.4:28474291-28474310 | MS.gene65516:CDS | 35.0% | |
| TTCGAATGCCTTAATCTTGT+TGG | + | chr1.4:28475601-28475620 | MS.gene65516:CDS | 35.0% | |
| TTGAACATGGATATGCAACT+TGG | + | chr1.4:28474642-28474661 | MS.gene65516:CDS | 35.0% | |
| TTGATAGATGGTAACAATGG+GGG | + | chr1.4:28474569-28474588 | MS.gene65516:CDS | 35.0% | |
| ! | AAGATTAAGGCATTCGAATC+CGG | - | chr1.4:28475599-28475618 | None:intergenic | 35.0% |
| ! | AGCATGATTTGAAATGTGTG+GGG | - | chr1.4:28473396-28473415 | None:intergenic | 35.0% |
| ! | CAGCATGATTTGAAATGTGT+GGG | - | chr1.4:28473397-28473416 | None:intergenic | 35.0% |
| ! | GAAAGTCATGAGTAATGGAA+TGG | + | chr1.4:28474196-28474215 | MS.gene65516:CDS | 35.0% |
| ! | GATTTAAGGTTGAGGTTGAT+AGG | + | chr1.4:28474477-28474496 | MS.gene65516:CDS | 35.0% |
| ! | TCAGCATGATTTGAAATGTG+TGG | - | chr1.4:28473398-28473417 | None:intergenic | 35.0% |
| !! | AAGTCTATGGCTTTATGCAA+GGG | + | chr1.4:28474449-28474468 | MS.gene65516:CDS | 35.0% |
| !! | ATCGCCGTTTTATCAACATT+AGG | - | chr1.4:28473714-28473733 | None:intergenic | 35.0% |
| !! | CCTTTGGAGATGAAATGTTT+TGG | + | chr1.4:28474389-28474408 | MS.gene65516:CDS | 35.0% |
| !! | CTTAACTTGCCTGATTTAGA+TGG | + | chr1.4:28475664-28475683 | MS.gene65516:CDS | 35.0% |
| !! | TTAGTGTTGGCGATTTCAAA+GGG | + | chr1.4:28473919-28473938 | MS.gene65516:CDS | 35.0% |
| !! | TTGCGATTCTTCTAGAATTG+CGG | - | chr1.4:28474084-28474103 | None:intergenic | 35.0% |
| !!! | ATGCAAGGGTTTTGGATTTA+AGG | + | chr1.4:28474463-28474482 | MS.gene65516:CDS | 35.0% |
| !!! | CCCCTTTGAAGTTATTCTTT+TGG | + | chr1.4:28475639-28475658 | MS.gene65516:CDS | 35.0% |
| !!! | TCTTGTGTTTCAAGTTTTGG+CGG | + | chr1.4:28474598-28474617 | MS.gene65516:CDS | 35.0% |
| !!! | TTTTCAGGTGATTTTGCACA+TGG | + | chr1.4:28474538-28474557 | MS.gene65516:CDS | 35.0% |
| AAATCGCCAACACTAAGCAT+TGG | - | chr1.4:28473915-28473934 | None:intergenic | 40.0% | |
| AAGCTCAGAAGAAGAATTGC+GGG | + | chr1.4:28475756-28475775 | MS.gene65516:CDS | 40.0% | |
| AAGGCCAATGCATTCAGTTA+TGG | + | chr1.4:28474220-28474239 | MS.gene65516:CDS | 40.0% | |
| AGGCCAATGCATTCAGTTAT+GGG | + | chr1.4:28474221-28474240 | MS.gene65516:CDS | 40.0% | |
| AGTTTCCGACAGTTTAACCA+AGG | - | chr1.4:28473661-28473680 | None:intergenic | 40.0% | |
| ATATTATCGGTGACGAGAAG+AGG | + | chr1.4:28474513-28474532 | MS.gene65516:CDS | 40.0% | |
| ATGGACAATTCAGATAGGGA+CGG | + | chr1.4:28474350-28474369 | MS.gene65516:CDS | 40.0% | |
| CAAGCTCAGAAGAAGAATTG+CGG | + | chr1.4:28475755-28475774 | MS.gene65516:CDS | 40.0% | |
| CAGAAGTTTCTCCAGAAACT+AGG | + | chr1.4:28475550-28475569 | MS.gene65516:CDS | 40.0% | |
| CATAGGGATCAAAGTGATGA+GGG | - | chr1.4:28473475-28473494 | None:intergenic | 40.0% | |
| CTTGCATAAAGCCATAGACT+TGG | - | chr1.4:28474450-28474469 | None:intergenic | 40.0% | |
| GATCAAAGTGATGAGGGTTA+TGG | - | chr1.4:28473469-28473488 | None:intergenic | 40.0% | |
| TAGTTGAAACCGAAGAGCAA+GGG | - | chr1.4:28475404-28475423 | None:intergenic | 40.0% | |
| TATTATCGGTGACGAGAAGA+GGG | + | chr1.4:28474514-28474533 | MS.gene65516:CDS | 40.0% | |
| TCACTCATGAATTGAATGGG+AGG | + | chr1.4:28473739-28473758 | MS.gene65516:CDS | 40.0% | |
| TCCCATTCAATTCATGAGTG+AGG | - | chr1.4:28473740-28473759 | None:intergenic | 40.0% | |
| TGTAAGAGTCAAGGGAGATA+AGG | + | chr1.4:28473800-28473819 | MS.gene65516:CDS | 40.0% | |
| TGTTCAGTACCAAATGCTAG+AGG | + | chr1.4:28475361-28475380 | MS.gene65516:CDS | 40.0% | |
| TTCTATACCGATCACTGATC+CGG | + | chr1.4:28473773-28473792 | MS.gene65516:CDS | 40.0% | |
| TTTGGTACTTCCTAGTGAAG+AGG | + | chr1.4:28473983-28474002 | MS.gene65516:CDS | 40.0% | |
| ! | AGGTGATTTTGCACATGGTT+AGG | + | chr1.4:28474543-28474562 | MS.gene65516:CDS | 40.0% |
| ! | AGTTACGGCTTTTGAACTTC+CGG | - | chr1.4:28475711-28475730 | None:intergenic | 40.0% |
| ! | ATGGATTTGAAGTTACCGCA+AGG | + | chr1.4:28475683-28475702 | MS.gene65516:CDS | 40.0% |
| ! | CAAAACAAGTATCGCGTAAC+AGG | - | chr1.4:28473967-28473986 | None:intergenic | 40.0% |
| ! | CTGTTACGCGATACTTGTTT+TGG | + | chr1.4:28473965-28473984 | MS.gene65516:CDS | 40.0% |
| ! | TCATGAGTAATGGAATGGGA+AGG | + | chr1.4:28474201-28474220 | MS.gene65516:CDS | 40.0% |
| !! | CAACACTAAGCATTGGCATT+CGG | - | chr1.4:28473908-28473927 | None:intergenic | 40.0% |
| !! | CAAGTCTATGGCTTTATGCA+AGG | + | chr1.4:28474448-28474467 | MS.gene65516:CDS | 40.0% |
| !! | CGTATTGAATCAAGTATCGG+CGG | - | chr1.4:28475083-28475102 | None:intergenic | 40.0% |
| !! | CTTAGTGTTGGCGATTTCAA+AGG | + | chr1.4:28473918-28473937 | MS.gene65516:CDS | 40.0% |
| !! | CTTGCAACAGAATTGGCTTT+CGG | - | chr1.4:28475816-28475835 | None:intergenic | 40.0% |
| !! | TAGTGTTGGCGATTTCAAAG+GGG | + | chr1.4:28473920-28473939 | MS.gene65516:CDS | 40.0% |
| !!! | ATGGCTTTATGCAAGGGTTT+TGG | + | chr1.4:28474455-28474474 | MS.gene65516:CDS | 40.0% |
| !!! | CAGGATTTTTTGGAGTTCTC+CGG | - | chr1.4:28475845-28475864 | None:intergenic | 40.0% |
| !!! | GGGTTTTGGATTTAAGGTTG+AGG | + | chr1.4:28474469-28474488 | MS.gene65516:CDS | 40.0% |
| !!! | TTTCAAGTTTTGGCGGAATC+TGG | + | chr1.4:28474605-28474624 | MS.gene65516:CDS | 40.0% |
| AACTGATGACCCTTGCTCTT+CGG | + | chr1.4:28475392-28475411 | MS.gene65516:CDS | 45.0% | |
| ACAACATCCGGATCAGTGAT+CGG | - | chr1.4:28473783-28473802 | None:intergenic | 45.0% | |
| AGAGTTCTTGCTGAAGCGAA+AGG | + | chr1.4:28473515-28473534 | MS.gene65516:CDS | 45.0% | |
| AGGGAGCTTGGAATTGAGTA+CGG | + | chr1.4:28473540-28473559 | MS.gene65516:CDS | 45.0% | |
| AGTCGAGGAAGGATTGAACA+TGG | + | chr1.4:28474629-28474648 | MS.gene65516:CDS | 45.0% | |
| AGTGGAGTTTCTGTTGATGC+AGG | + | chr1.4:28473867-28473886 | MS.gene65516:CDS | 45.0% | |
| AGTTTCTGTTGATGCAGGAC+CGG | + | chr1.4:28473872-28473891 | MS.gene65516:CDS | 45.0% | |
| ATAGATGGTAACAATGGGGG+AGG | + | chr1.4:28474572-28474591 | MS.gene65516:CDS | 45.0% | |
| ATTCTGTTGCAAGGATTCGC+CGG | + | chr1.4:28475823-28475842 | MS.gene65516:CDS | 45.0% | |
| CAAGATCTAGCCTCTTCACT+AGG | - | chr1.4:28473996-28474015 | None:intergenic | 45.0% | |
| CACATGAAACCAATGCAGTG+AGG | - | chr1.4:28473440-28473459 | None:intergenic | 45.0% | |
| CAGAGACCTCAGTTACTTCA+GGG | + | chr1.4:28474735-28474754 | MS.gene65516:CDS | 45.0% | |
| CAGCATGGCCAACAAGATTA+AGG | - | chr1.4:28475612-28475631 | None:intergenic | 45.0% | |
| CCCTTGACTCTTACAACATC+CGG | - | chr1.4:28473795-28473814 | None:intergenic | 45.0% | |
| CCGGATGTTGTAAGAGTCAA+GGG | + | chr1.4:28473792-28473811 | MS.gene65516:CDS | 45.0% | |
| CGAAAGCCAATTCTGTTGCA+AGG | + | chr1.4:28475814-28475833 | MS.gene65516:CDS | 45.0% | |
| CGAATGCCAATGCTTAGTGT+TGG | + | chr1.4:28473906-28473925 | MS.gene65516:CDS | 45.0% | |
| CTAGTGAAGAGGCTAGATCT+TGG | + | chr1.4:28473994-28474013 | MS.gene65516:CDS | 45.0% | |
| CTTAATCTTGTTGGCCATGC+TGG | + | chr1.4:28475610-28475629 | MS.gene65516:CDS | 45.0% | |
| CTTGAAAGTCCTCACTGCAT+TGG | + | chr1.4:28473428-28473447 | MS.gene65516:CDS | 45.0% | |
| GATTCGATGGTAAGGACAAG+CGG | + | chr1.4:28474299-28474318 | MS.gene65516:CDS | 45.0% | |
| GCATAGGGATCAAAGTGATG+AGG | - | chr1.4:28473476-28473495 | None:intergenic | 45.0% | |
| GCGAATCCTTGCAACAGAAT+TGG | - | chr1.4:28475823-28475842 | None:intergenic | 45.0% | |
| GGAAGTTCAAAAGCCGTAAC+TGG | + | chr1.4:28475710-28475729 | MS.gene65516:CDS | 45.0% | |
| GGAGAAAAGGAACGCTATGA+TGG | + | chr1.4:28474148-28474167 | MS.gene65516:CDS | 45.0% | |
| GTAGTTGAAACCGAAGAGCA+AGG | - | chr1.4:28475405-28475424 | None:intergenic | 45.0% | |
| TAGATGGTAACAATGGGGGA+GGG | + | chr1.4:28474573-28474592 | MS.gene65516:CDS | 45.0% | |
| TCAAACTTTCCTCGAATGCC+CGG | - | chr1.4:28474790-28474809 | None:intergenic | 45.0% | |
| TCAGAGACCTCAGTTACTTC+AGG | + | chr1.4:28474734-28474753 | MS.gene65516:CDS | 45.0% | |
| TCCGGATGTTGTAAGAGTCA+AGG | + | chr1.4:28473791-28473810 | MS.gene65516:CDS | 45.0% | |
| TGAGGAAAGCCTCTAGCATT+TGG | - | chr1.4:28475373-28475392 | None:intergenic | 45.0% | |
| TGGAGGTGGAAGATTTCCTT+TGG | + | chr1.4:28474373-28474392 | MS.gene65516:CDS | 45.0% | |
| TTGAAGTTACCGCAAGGATC+CGG | + | chr1.4:28475689-28475708 | MS.gene65516:CDS | 45.0% | |
| TTTGAACTTCCGGATCCTTG+CGG | - | chr1.4:28475701-28475720 | None:intergenic | 45.0% | |
| ! | GAGCATTGCAACAGGAGAAA+AGG | + | chr1.4:28474135-28474154 | MS.gene65516:CDS | 45.0% |
| ! | TGACGAGAAGAGGGTTTTTC+AGG | + | chr1.4:28474523-28474542 | MS.gene65516:CDS | 45.0% |
| !! | AGTGTTGGCGATTTCAAAGG+GGG | + | chr1.4:28473921-28473940 | MS.gene65516:CDS | 45.0% |
| !! | GCCTATCGCTGTTGCTTTAA+CGG | + | chr1.4:28475732-28475751 | MS.gene65516:CDS | 45.0% |
| AAGCCTCCCTGAAGTAACTG+AGG | - | chr1.4:28474744-28474763 | None:intergenic | 50.0% | |
| AAGGATGTGTACGAGTGACC+GGG | + | chr1.4:28474769-28474788 | MS.gene65516:CDS | 50.0% | |
| AATTCAGATAGGGACGGTGG+AGG | + | chr1.4:28474356-28474375 | MS.gene65516:CDS | 50.0% | |
| ACATCACCGTTAGACGAGCT+TGG | - | chr1.4:28474671-28474690 | None:intergenic | 50.0% | |
| AGACCTCAGTTACTTCAGGG+AGG | + | chr1.4:28474738-28474757 | MS.gene65516:CDS | 50.0% | |
| AGAGCAAGGGTCATCAGTTG+AGG | - | chr1.4:28475391-28475410 | None:intergenic | 50.0% | |
| AGCTTGCATCGCCAAGTCTA+TGG | + | chr1.4:28474436-28474455 | MS.gene65516:CDS | 50.0% | |
| CAACAGCGATAGGCCAGTTA+CGG | - | chr1.4:28475726-28475745 | None:intergenic | 50.0% | |
| GAAGGATGTGTACGAGTGAC+CGG | + | chr1.4:28474768-28474787 | MS.gene65516:CDS | 50.0% | |
| GACAATTCAGATAGGGACGG+TGG | + | chr1.4:28474353-28474372 | MS.gene65516:CDS | 50.0% | |
| GACTTGCAGACCTCTGAACA+AGG | - | chr1.4:28475491-28475510 | None:intergenic | 50.0% | |
| GCCGTTAAAGCAACAGCGAT+AGG | - | chr1.4:28475736-28475755 | None:intergenic | 50.0% | |
| TCAACTACGCTGTTCTACCG+CGG | + | chr1.4:28475417-28475436 | MS.gene65516:CDS | 50.0% | |
| TGGAGACCAAGCTCGTCTAA+CGG | + | chr1.4:28474662-28474681 | MS.gene65516:CDS | 50.0% | |
| ! | CAGAGGTCTGCAAGTCTTGT+TGG | + | chr1.4:28475495-28475514 | MS.gene65516:CDS | 50.0% |
| ! | GCGAAATCGAGCATTGCAAC+AGG | + | chr1.4:28474127-28474146 | MS.gene65516:CDS | 50.0% |
| ! | GTGTTGGCGATTTCAAAGGG+GGG | + | chr1.4:28473922-28473941 | MS.gene65516:CDS | 50.0% |
| !! | CAAGTATCGGCGGCTAATGA+AGG | - | chr1.4:28475073-28475092 | None:intergenic | 50.0% |
| CGGAATCTGGAAGTCGAGGA+AGG | + | chr1.4:28474618-28474637 | MS.gene65516:CDS | 55.0% | |
| CTCTGAACTCTCCCCTGGTT+CGG | - | chr1.4:28475452-28475471 | None:intergenic | 55.0% | |
| CTTGCTGAAGCGAAAGGCGA+GGG | + | chr1.4:28473521-28473540 | MS.gene65516:CDS | 55.0% | |
| GATGACTCTGAACTCTCCCC+TGG | - | chr1.4:28475457-28475476 | None:intergenic | 55.0% | |
| GGTTGCAGAACTGTGCTGTG+TGG | + | chr1.4:28473685-28473704 | MS.gene65516:CDS | 55.0% | |
| GTTACTTCAGGGAGGCTTGC+AGG | + | chr1.4:28474746-28474765 | MS.gene65516:CDS | 55.0% | |
| GTTGCTGATCAGGTAGCCGT+GGG | + | chr1.4:28474047-28474066 | MS.gene65516:CDS | 55.0% | |
| TAACAGGCCTCCGTTACCTC+AGG | - | chr1.4:28473951-28473970 | None:intergenic | 55.0% | |
| TCTGAACTCTCCCCTGGTTC+GGG | - | chr1.4:28475451-28475470 | None:intergenic | 55.0% | |
| TCTTGCTGAAGCGAAAGGCG+AGG | + | chr1.4:28473520-28473539 | MS.gene65516:CDS | 55.0% | |
| TGCGGCATGAGAAAGACCCA+CGG | - | chr1.4:28474066-28474085 | None:intergenic | 55.0% | |
| TGTTGCTGATCAGGTAGCCG+TGG | + | chr1.4:28474046-28474065 | MS.gene65516:CDS | 55.0% | |
| TTGGCGGAATCTGGAAGTCG+AGG | + | chr1.4:28474614-28474633 | MS.gene65516:CDS | 55.0% | |
| ! | GAACGCTATGATGGCGAGTG+AGG | + | chr1.4:28474157-28474176 | MS.gene65516:CDS | 55.0% |
| AAGCGAAAGGCGAGGGAGCT+TGG | + | chr1.4:28473528-28473547 | MS.gene65516:CDS | 60.0% | |
| CGGTAACCATCCCCGAACCA+GGG | + | chr1.4:28475437-28475456 | MS.gene65516:CDS | 60.0% | |
| CTTCAGGGAGGCTTGCAGGA+AGG | + | chr1.4:28474750-28474769 | MS.gene65516:CDS | 60.0% | |
| GATGGCGAGTGAGGCTAGAG+CGG | + | chr1.4:28474166-28474185 | MS.gene65516:CDS | 60.0% | |
| GGCATTCGGATCGCAGCAAC+CGG | - | chr1.4:28473894-28473913 | None:intergenic | 60.0% | |
| GGTAACCATCCCCGAACCAG+GGG | + | chr1.4:28475438-28475457 | MS.gene65516:CDS | 60.0% | |
| TACGAGTGACCGGGCATTCG+AGG | + | chr1.4:28474778-28474797 | MS.gene65516:CDS | 60.0% | |
| TCAGATAGGGACGGTGGAGG+TGG | + | chr1.4:28474359-28474378 | MS.gene65516:CDS | 60.0% | |
| TTTCAAAGGGGGGACGCCTG+AGG | + | chr1.4:28473932-28473951 | MS.gene65516:CDS | 60.0% | |
| ! | CAAAGGGGCATGCACCAGCA+TGG | - | chr1.4:28475627-28475646 | None:intergenic | 60.0% |
| ! | CTGAACTCTCCCCTGGTTCG+GGG | - | chr1.4:28475450-28475469 | None:intergenic | 60.0% |
| ! | CTGCTTGCTGCTGCGAGTAG+TGG | + | chr1.4:28473849-28473868 | MS.gene65516:CDS | 60.0% |
| ! | TGGTTCGGGGATGGTTACCG+CGG | - | chr1.4:28475437-28475456 | None:intergenic | 60.0% |
| AGGGGGGACGCCTGAGGTAA+CGG | + | chr1.4:28473938-28473957 | MS.gene65516:CDS | 65.0% | |
| GCGGTAACCATCCCCGAACC+AGG | + | chr1.4:28475436-28475455 | MS.gene65516:CDS | 65.0% | |
| !! | ACTCTCCCCTGGTTCGGGGA+TGG | - | chr1.4:28475446-28475465 | None:intergenic | 65.0% |
| ! | GGGGACGCCTGAGGTAACGG+AGG | + | chr1.4:28473941-28473960 | MS.gene65516:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 28473380 | 28475876 | 28473380 | ID=MS.gene65516 |
| chr1.4 | mRNA | 28473380 | 28475876 | 28473380 | ID=MS.gene65516.t1;Parent=MS.gene65516 |
| chr1.4 | exon | 28473380 | 28474838 | 28473380 | ID=MS.gene65516.t1.exon1;Parent=MS.gene65516.t1 |
| chr1.4 | CDS | 28473380 | 28474838 | 28473380 | ID=cds.MS.gene65516.t1;Parent=MS.gene65516.t1 |
| chr1.4 | exon | 28475343 | 28475876 | 28475343 | ID=MS.gene65516.t1.exon2;Parent=MS.gene65516.t1 |
| chr1.4 | CDS | 28475343 | 28475876 | 28475343 | ID=cds.MS.gene65516.t1;Parent=MS.gene65516.t1 |
| Gene Sequence |
| Protein sequence |
