Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65930.t1 | XP_003590003.1 | 97.6 | 170 | 4 | 0 | 1 | 170 | 248 | 417 | 2.50E-88 | 334.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65930.t1 | P0A9T4 | 42.3 | 168 | 88 | 4 | 1 | 168 | 187 | 345 | 4.6e-27 | 122.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65930.t1 | G7I4M8 | 97.6 | 170 | 4 | 0 | 1 | 170 | 248 | 417 | 1.8e-88 | 334.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049285 | MS.gene65930 | 0.800186 | 1.62E-48 | -1.69E-46 |
| MS.gene049427 | MS.gene65930 | 0.832957 | 7.03E-56 | -1.69E-46 |
| MS.gene049491 | MS.gene65930 | 0.812055 | 5.14E-51 | -1.69E-46 |
| MS.gene049614 | MS.gene65930 | 0.807616 | 4.63E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene65930 | 0.845593 | 3.69E-59 | -1.69E-46 |
| MS.gene050333 | MS.gene65930 | 0.822028 | 2.95E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene65930 | 0.80815 | 3.57E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene65930 | 0.806498 | 7.99E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene65930 | 0.821271 | 4.41E-53 | -1.69E-46 |
| MS.gene050767 | MS.gene65930 | 0.839937 | 1.18E-57 | -1.69E-46 |
| MS.gene050770 | MS.gene65930 | 0.843481 | 1.36E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene65930 | 0.814997 | 1.16E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene65930 | 0.808409 | 3.14E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene65930 | 0.810679 | 1.02E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene65930 | 0.80467 | 1.93E-49 | -1.69E-46 |
| MS.gene051228 | MS.gene65930 | 0.850567 | 1.56E-60 | -1.69E-46 |
| MS.gene051666 | MS.gene65930 | 0.819252 | 1.28E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene65930 | 0.808484 | 3.03E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene65930 | 0.807136 | 5.86E-50 | -1.69E-46 |
| MS.gene052290 | MS.gene65930 | 0.806124 | 9.58E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene65930 | 0.864051 | 1.61E-64 | -1.69E-46 |
| MS.gene052340 | MS.gene65930 | 0.80719 | 5.70E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene65930 | 0.836949 | 6.93E-57 | -1.69E-46 |
| MS.gene052484 | MS.gene65930 | 0.807714 | 4.42E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene65930 | 0.829815 | 4.17E-55 | -1.69E-46 |
| MS.gene052872 | MS.gene65930 | 0.822206 | 2.68E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene65930 | 0.860084 | 2.64E-63 | -1.69E-46 |
| MS.gene053104 | MS.gene65930 | 0.85824 | 9.44E-63 | -1.69E-46 |
| MS.gene053322 | MS.gene65930 | 0.85056 | 1.57E-60 | -1.69E-46 |
| MS.gene053384 | MS.gene65930 | 0.897248 | 1.69E-76 | -1.69E-46 |
| MS.gene053557 | MS.gene65930 | 0.800647 | 1.31E-48 | -1.69E-46 |
| MS.gene054376 | MS.gene65930 | 0.832034 | 1.19E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene65930 | 0.808265 | 3.37E-50 | -1.69E-46 |
| MS.gene054955 | MS.gene65930 | 0.814101 | 1.83E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene65930 | 0.813927 | 2.00E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene65930 | 0.821882 | 3.19E-53 | -1.69E-46 |
| MS.gene055397 | MS.gene65930 | 0.831447 | 1.66E-55 | -1.69E-46 |
| MS.gene055412 | MS.gene65930 | 0.842386 | 2.67E-58 | -1.69E-46 |
| MS.gene055636 | MS.gene65930 | 0.811717 | 6.09E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene65930 | 0.826265 | 2.98E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene65930 | 0.818588 | 1.81E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene65930 | 0.831421 | 1.69E-55 | -1.69E-46 |
| MS.gene055941 | MS.gene65930 | 0.809774 | 1.60E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene65930 | 0.8633 | 2.75E-64 | -1.69E-46 |
| MS.gene056796 | MS.gene65930 | 0.803324 | 3.68E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene65930 | 0.824303 | 8.68E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene65930 | 0.847734 | 9.59E-60 | -1.69E-46 |
| MS.gene057123 | MS.gene65930 | 0.806911 | 6.54E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene65930 | 0.842105 | 3.17E-58 | -1.69E-46 |
| MS.gene057146 | MS.gene65930 | 0.805767 | 1.14E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene65930 | 0.81386 | 2.07E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene65930 | 0.827592 | 1.44E-54 | -1.69E-46 |
| MS.gene058019 | MS.gene65930 | 0.818453 | 1.95E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene65930 | 0.841829 | 3.75E-58 | -1.69E-46 |
| MS.gene058660 | MS.gene65930 | 0.820965 | 5.19E-53 | -1.69E-46 |
| MS.gene059029 | MS.gene65930 | 0.814495 | 1.50E-51 | -1.69E-46 |
| MS.gene059326 | MS.gene65930 | 0.817513 | 3.17E-52 | -1.69E-46 |
| MS.gene05934 | MS.gene65930 | 0.806828 | 6.80E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene65930 | 0.84297 | 1.87E-58 | -1.69E-46 |
| MS.gene059597 | MS.gene65930 | 0.835466 | 1.65E-56 | -1.69E-46 |
| MS.gene05959 | MS.gene65930 | 0.805037 | 1.62E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene65930 | 0.850048 | 2.18E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene65930 | 0.819316 | 1.24E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene65930 | 0.824213 | 9.12E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene65930 | 0.828642 | 8.03E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene65930 | 0.819468 | 1.14E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene65930 | 0.882077 | 1.41E-70 | -1.69E-46 |
| MS.gene060804 | MS.gene65930 | 0.854723 | 1.02E-61 | -1.69E-46 |
| MS.gene060818 | MS.gene65930 | 0.868712 | 5.32E-66 | -1.69E-46 |
| MS.gene061041 | MS.gene65930 | 0.833138 | 6.33E-56 | -1.69E-46 |
| MS.gene061051 | MS.gene65930 | -0.807612 | 4.64E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene65930 | 0.813423 | 2.58E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene65930 | 0.851796 | 7.03E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65930.t1 | MTR_1g042730 | 97.647 | 170 | 4 | 0 | 1 | 170 | 248 | 417 | 5.02e-121 | 348 |
| MS.gene65930.t1 | MTR_8g088160 | 50.538 | 93 | 37 | 6 | 1 | 88 | 226 | 314 | 2.03e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65930.t1 | AT1G04420 | 74.556 | 169 | 43 | 0 | 2 | 170 | 244 | 412 | 1.04e-92 | 275 |
Find 36 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGCAAGCTATAGCTGTTC+TGG | 0.272185 | 1.1:-26568122 | None:intergenic |
| TTCTGGATACTGACAATCTT+TGG | 0.280723 | 1.1:-26568105 | None:intergenic |
| AAGCCAATGTTGCAATTCTT+TGG | 0.310094 | 1.1:-26568959 | None:intergenic |
| AGGAGTTAAACCATGTTTCT+TGG | 0.319091 | 1.1:-26569404 | None:intergenic |
| AATCCAAGCGCGAGCTGAAC+AGG | 0.376331 | 1.1:-26569424 | None:intergenic |
| TTCTTACCCGTGAAAGTGAT+TGG | 0.390126 | 1.1:-26569099 | None:intergenic |
| TGTGAGAGATCGTCCATTCA+TGG | 0.397619 | 1.1:+26569447 | MS.gene65930:CDS |
| CTAGGCGGCGGAACACTCTC+TGG | 0.422546 | 1.1:+26568998 | MS.gene65930:CDS |
| ATAATTGAACTCGCCATGAA+TGG | 0.430321 | 1.1:-26569460 | None:intergenic |
| ACTCCTGTTCAGCTCGCGCT+TGG | 0.430695 | 1.1:+26569421 | MS.gene65930:CDS |
| TTCATGGCGAGTTCAATTAT+CGG | 0.446341 | 1.1:+26569463 | MS.gene65930:CDS |
| CATCCAAAGAATTGCAACAT+TGG | 0.453546 | 1.1:+26568956 | MS.gene65930:CDS |
| CAATGTTGCAATTCTTTGGA+TGG | 0.454759 | 1.1:-26568955 | None:intergenic |
| ATTCCTGTCATGACTTCTGC+TGG | 0.463780 | 1.1:-26569550 | None:intergenic |
| GAATCTCTTCCCTGGCTACA+TGG | 0.467731 | 1.1:+26569066 | MS.gene65930:CDS |
| GATATAACCAATCACTTTCA+CGG | 0.468306 | 1.1:+26569092 | MS.gene65930:CDS |
| TTATATCTTTCCATGTAGCC+AGG | 0.480910 | 1.1:-26569076 | None:intergenic |
| AGAGTGTTCCGCCGCCTAGT+GGG | 0.496927 | 1.1:-26568994 | None:intergenic |
| CTTGAGTTGGCCAAGAAACA+TGG | 0.517065 | 1.1:+26569394 | MS.gene65930:CDS |
| GTCATGACTTCTGCTGGTAA+AGG | 0.518717 | 1.1:-26569544 | None:intergenic |
| TCCGCCGCCTAGTGGGGAAT+AGG | 0.518898 | 1.1:-26568987 | None:intergenic |
| GTCCATGCAGCTAAAGTTGA+GGG | 0.519118 | 1.1:+26568078 | MS.gene65930:CDS |
| TATAGTCTTTAAAGGATGCT+AGG | 0.527210 | 1.1:-26569601 | None:intergenic |
| AACTATTAAGTATCTTGAGT+TGG | 0.528848 | 1.1:+26569381 | MS.gene65930:CDS |
| GAGAGTGTTCCGCCGCCTAG+TGG | 0.531448 | 1.1:-26568995 | None:intergenic |
| GTCCCTCAACTTTAGCTGCA+TGG | 0.544863 | 1.1:-26568080 | None:intergenic |
| TCCTATTCCCCACTAGGCGG+CGG | 0.552022 | 1.1:+26568986 | MS.gene65930:CDS |
| ATATAACCAATCACTTTCAC+GGG | 0.562310 | 1.1:+26569093 | MS.gene65930:CDS |
| TTGCTATCCTATTCCCCACT+AGG | 0.566323 | 1.1:+26568980 | MS.gene65930:CDS |
| GGAAGACTGAATCTCTTCCC+TGG | 0.567807 | 1.1:+26569058 | MS.gene65930:CDS |
| CGTCCATGCAGCTAAAGTTG+AGG | 0.578730 | 1.1:+26568077 | MS.gene65930:CDS |
| TATATCTTTCCATGTAGCCA+GGG | 0.587281 | 1.1:-26569075 | None:intergenic |
| AATTATCGGTGCAACATCTG+TGG | 0.606607 | 1.1:+26569477 | MS.gene65930:CDS |
| TTACCAGCAGAAGTCATGAC+AGG | 0.613222 | 1.1:+26569547 | MS.gene65930:CDS |
| GAGTGTTCCGCCGCCTAGTG+GGG | 0.617674 | 1.1:-26568993 | None:intergenic |
| CTATCCTATTCCCCACTAGG+CGG | 0.752007 | 1.1:+26568983 | MS.gene65930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAGGAAAATTCTTAAT+TGG | - | chr1.1:26569336-26569355 | None:intergenic | 15.0% |
| !!! | AATGTAATACTTTTAAAACT+TGG | - | chr1.1:26568320-26568339 | None:intergenic | 15.0% |
| !!! | ATGTAATACTTTTAAAACTT+GGG | - | chr1.1:26568319-26568338 | None:intergenic | 15.0% |
| !!! | TATTTTTGCAAATTTCTTAA+TGG | - | chr1.1:26568832-26568851 | None:intergenic | 15.0% |
| !! | AACCAAACATGAAAAAATAA+AGG | - | chr1.1:26569351-26569370 | None:intergenic | 20.0% |
| !!! | TGTAATACTTTTAAAACTTG+GGG | - | chr1.1:26568318-26568337 | None:intergenic | 20.0% |
| !!! | TTCCTTTATTTTTTCATGTT+TGG | + | chr1.1:26569346-26569365 | MS.gene65930:intron | 20.0% |
| ! | AACACGAATCATATACTATA+AGG | - | chr1.1:26568257-26568276 | None:intergenic | 25.0% |
| ! | AACCATACACTAAAAGTTTA+CGG | - | chr1.1:26568696-26568715 | None:intergenic | 25.0% |
| ! | AACTATTAAGTATCTTGAGT+TGG | + | chr1.1:26569381-26569400 | MS.gene65930:CDS | 25.0% |
| ! | ACAAATGATTACAGATAACA+TGG | + | chr1.1:26568450-26568469 | MS.gene65930:intron | 25.0% |
| ! | TAGAGAGTCCAAAATAAAAA+AGG | + | chr1.1:26568348-26568367 | MS.gene65930:intron | 25.0% |
| ! | TGAGTTTCTTTATCTTACAA+GGG | + | chr1.1:26568531-26568550 | MS.gene65930:intron | 25.0% |
| ! | TTATAATAACCAAACTGAAC+TGG | - | chr1.1:26569271-26569290 | None:intergenic | 25.0% |
| ! | TTGAGTTTCTTTATCTTACA+AGG | + | chr1.1:26568530-26568549 | MS.gene65930:intron | 25.0% |
| !!! | TAATTCGGTTTTGAAAAAGA+CGG | - | chr1.1:26569156-26569175 | None:intergenic | 25.0% |
| !!! | TTTTTTATTTTGGACTCTCT+AGG | - | chr1.1:26568349-26568368 | None:intergenic | 25.0% |
| !!! | TTTTTTCATGTTTGGTTTTC+AGG | + | chr1.1:26569354-26569373 | MS.gene65930:intron | 25.0% |
| ATATAACCAATCACTTTCAC+GGG | + | chr1.1:26569093-26569112 | MS.gene65930:CDS | 30.0% | |
| ATCACTTAATTCTGTATTGC+TGG | + | chr1.1:26568207-26568226 | MS.gene65930:intron | 30.0% | |
| ATTGGTTATCTTGTTAACCA+TGG | - | chr1.1:26569318-26569337 | None:intergenic | 30.0% | |
| CAGTTTGGTTATTATAACAC+TGG | + | chr1.1:26569274-26569293 | MS.gene65930:intron | 30.0% | |
| CCAATTTATCCTTCAAACTT+GGG | + | chr1.1:26568618-26568637 | MS.gene65930:intron | 30.0% | |
| GATATAACCAATCACTTTCA+CGG | + | chr1.1:26569092-26569111 | MS.gene65930:CDS | 30.0% | |
| GATCATATTCATATGCACTT+TGG | + | chr1.1:26568640-26568659 | MS.gene65930:intron | 30.0% | |
| GATTACAGATAACATGGTTT+AGG | + | chr1.1:26568456-26568475 | MS.gene65930:intron | 30.0% | |
| TAAAAGTTTACGGATCACAT+TGG | - | chr1.1:26568686-26568705 | None:intergenic | 30.0% | |
| TCATATACTATAAGGACAAC+AGG | - | chr1.1:26568249-26568268 | None:intergenic | 30.0% | |
| TCCAATTTATCCTTCAAACT+TGG | + | chr1.1:26568617-26568636 | MS.gene65930:intron | 30.0% | |
| TCTCACAATCAGCAATTTAT+AGG | + | chr1.1:26568555-26568574 | MS.gene65930:intron | 30.0% | |
| TTATTTGAGCAGTTCAATTG+CGG | - | chr1.1:26569239-26569258 | None:intergenic | 30.0% | |
| TTCAATGACTTTAAACCACT+CGG | + | chr1.1:26569207-26569226 | MS.gene65930:intron | 30.0% | |
| ! | ATCCGTAAACTTTTAGTGTA+TGG | + | chr1.1:26568691-26568710 | MS.gene65930:intron | 30.0% |
| ! | ATGCTTTTACAACAACTGAA+CGG | + | chr1.1:26569521-26569540 | MS.gene65930:CDS | 30.0% |
| ! | CATCAATGTCTTCTTTTAGT+TGG | - | chr1.1:26569504-26569523 | None:intergenic | 30.0% |
| !! | AATTCTAAAGCTGCAAAAAG+TGG | + | chr1.1:26569037-26569056 | MS.gene65930:CDS | 30.0% |
| !!! | CAGGAAAGCCTTTTTTATTT+TGG | - | chr1.1:26568359-26568378 | None:intergenic | 30.0% |
| !!! | TTGGACGTTTTTGAAGTTTA+AGG | - | chr1.1:26568667-26568686 | None:intergenic | 30.0% |
| AAGCCAATGTTGCAATTCTT+TGG | - | chr1.1:26568962-26568981 | None:intergenic | 35.0% | |
| AATAACCAAACTGAACTGGA+TGG | - | chr1.1:26569267-26569286 | None:intergenic | 35.0% | |
| AGCTTCTTCATGTTCTTAGT+TGG | + | chr1.1:26568897-26568916 | MS.gene65930:intron | 35.0% | |
| AGGAGTTAAACCATGTTTCT+TGG | - | chr1.1:26569407-26569426 | None:intergenic | 35.0% | |
| ATAATTGAACTCGCCATGAA+TGG | - | chr1.1:26569463-26569482 | None:intergenic | 35.0% | |
| CAATGTTGCAATTCTTTGGA+TGG | - | chr1.1:26568958-26568977 | None:intergenic | 35.0% | |
| CATCCAAAGAATTGCAACAT+TGG | + | chr1.1:26568956-26568975 | MS.gene65930:CDS | 35.0% | |
| CCAAGTATTCAAAGATCTAC+AGG | - | chr1.1:26568378-26568397 | None:intergenic | 35.0% | |
| CCCAAGTTTGAAGGATAAAT+TGG | - | chr1.1:26568621-26568640 | None:intergenic | 35.0% | |
| CCTGTAGATCTTTGAATACT+TGG | + | chr1.1:26568375-26568394 | MS.gene65930:intron | 35.0% | |
| GAATATGATCCCAAGTTTGA+AGG | - | chr1.1:26568630-26568649 | None:intergenic | 35.0% | |
| TATATCTTTCCATGTAGCCA+GGG | - | chr1.1:26569078-26569097 | None:intergenic | 35.0% | |
| TTATATCTTTCCATGTAGCC+AGG | - | chr1.1:26569079-26569098 | None:intergenic | 35.0% | |
| TTCATGGCGAGTTCAATTAT+CGG | + | chr1.1:26569463-26569482 | MS.gene65930:CDS | 35.0% | |
| TTCTGGATACTGACAATCTT+TGG | - | chr1.1:26568108-26568127 | None:intergenic | 35.0% | |
| ! | GTTAACCATGGTTTAGAGTA+TGG | - | chr1.1:26569306-26569325 | None:intergenic | 35.0% |
| !! | CTTGTAAGAAGTCGTTTTGA+AGG | + | chr1.1:26568141-26568160 | MS.gene65930:CDS | 35.0% |
| !!! | TTTAGGATTTTAGTTGCCAG+AGG | + | chr1.1:26568473-26568492 | MS.gene65930:intron | 35.0% |
| AATTATCGGTGCAACATCTG+TGG | + | chr1.1:26569477-26569496 | MS.gene65930:CDS | 40.0% | |
| AATTTACCCCACTCCAAGTT+AGG | - | chr1.1:26568800-26568819 | None:intergenic | 40.0% | |
| ATTTACCCCACTCCAAGTTA+GGG | - | chr1.1:26568799-26568818 | None:intergenic | 40.0% | |
| GCTAAAAATTCCCCAAAAGC+AGG | - | chr1.1:26568591-26568610 | None:intergenic | 40.0% | |
| TCAGACCATACTCTAAACCA+TGG | + | chr1.1:26569298-26569317 | MS.gene65930:intron | 40.0% | |
| TGCTGGTACGATGTCTAATT+CGG | - | chr1.1:26569171-26569190 | None:intergenic | 40.0% | |
| TTCTTACCCGTGAAAGTGAT+TGG | - | chr1.1:26569102-26569121 | None:intergenic | 40.0% | |
| TTGAAGGTGGCAAGAGAAAT+AGG | + | chr1.1:26568503-26568522 | MS.gene65930:intron | 40.0% | |
| ! | AGTACAGTTCTTTTCTGACG+TGG | + | chr1.1:26568166-26568185 | MS.gene65930:intron | 40.0% |
| !! | CATACATTCTCCTGCTTTTG+GGG | + | chr1.1:26568578-26568597 | MS.gene65930:intron | 40.0% |
| !! | GCATACATTCTCCTGCTTTT+GGG | + | chr1.1:26568577-26568596 | MS.gene65930:intron | 40.0% |
| !! | TGTTTTTGCAGTTGATCTCG+TGG | + | chr1.1:26568925-26568944 | MS.gene65930:intron | 40.0% |
| AACTTCACACCCGCTAACTT+AGG | - | chr1.1:26568874-26568893 | None:intergenic | 45.0% | |
| ACTCCAAGTTAGGGTTCAAC+TGG | - | chr1.1:26568790-26568809 | None:intergenic | 45.0% | |
| ACTTCACACCCGCTAACTTA+GGG | - | chr1.1:26568873-26568892 | None:intergenic | 45.0% | |
| AGTCCAGTTGAACCCTAACT+TGG | + | chr1.1:26568784-26568803 | MS.gene65930:intron | 45.0% | |
| AGTTGAACCCTAACTTGGAG+TGG | + | chr1.1:26568789-26568808 | MS.gene65930:intron | 45.0% | |
| ATCGTACCAGCATGACTTCT+GGG | + | chr1.1:26569179-26569198 | MS.gene65930:intron | 45.0% | |
| ATTCCTGTCATGACTTCTGC+TGG | - | chr1.1:26569553-26569572 | None:intergenic | 45.0% | |
| CAAGCAAGCTATAGCTGTTC+TGG | - | chr1.1:26568125-26568144 | None:intergenic | 45.0% | |
| CTGAACCATCCAGTTCAGTT+TGG | + | chr1.1:26569259-26569278 | MS.gene65930:intron | 45.0% | |
| GTCATGACTTCTGCTGGTAA+AGG | - | chr1.1:26569547-26569566 | None:intergenic | 45.0% | |
| GTCCATGCAGCTAAAGTTGA+GGG | + | chr1.1:26568078-26568097 | MS.gene65930:CDS | 45.0% | |
| GTTGAACCCTAACTTGGAGT+GGG | + | chr1.1:26568790-26568809 | MS.gene65930:intron | 45.0% | |
| TGTGAGAGATCGTCCATTCA+TGG | + | chr1.1:26569447-26569466 | MS.gene65930:CDS | 45.0% | |
| TTACCAGCAGAAGTCATGAC+AGG | + | chr1.1:26569547-26569566 | MS.gene65930:CDS | 45.0% | |
| TTGAACCCTAACTTGGAGTG+GGG | + | chr1.1:26568791-26568810 | MS.gene65930:intron | 45.0% | |
| TTGCTATCCTATTCCCCACT+AGG | + | chr1.1:26568980-26568999 | MS.gene65930:CDS | 45.0% | |
| ! | GGCATACATTCTCCTGCTTT+TGG | + | chr1.1:26568576-26568595 | MS.gene65930:intron | 45.0% |
| !! | CTTGAGTTGGCCAAGAAACA+TGG | + | chr1.1:26569394-26569413 | MS.gene65930:CDS | 45.0% |
| !! | TTTTAGTTGCCAGAGGTGCA+AGG | + | chr1.1:26568480-26568499 | MS.gene65930:intron | 45.0% |
| CACCATGACCCTAAGTTAGC+GGG | + | chr1.1:26568862-26568881 | MS.gene65930:intron | 50.0% | |
| CATCGTACCAGCATGACTTC+TGG | + | chr1.1:26569178-26569197 | MS.gene65930:intron | 50.0% | |
| CGTCCATGCAGCTAAAGTTG+AGG | + | chr1.1:26568077-26568096 | MS.gene65930:CDS | 50.0% | |
| CTATCCTATTCCCCACTAGG+CGG | + | chr1.1:26568983-26569002 | MS.gene65930:CDS | 50.0% | |
| GAATCTCTTCCCTGGCTACA+TGG | + | chr1.1:26569066-26569085 | MS.gene65930:CDS | 50.0% | |
| GCACCATGACCCTAAGTTAG+CGG | + | chr1.1:26568861-26568880 | MS.gene65930:intron | 50.0% | |
| GGAAGACTGAATCTCTTCCC+TGG | + | chr1.1:26569058-26569077 | MS.gene65930:CDS | 50.0% | |
| GTCCCTCAACTTTAGCTGCA+TGG | - | chr1.1:26568083-26568102 | None:intergenic | 50.0% | |
| !! | CAATTGCGGTTTTGTCCGAG+TGG | - | chr1.1:26569225-26569244 | None:intergenic | 50.0% |
| AATCCAAGCGCGAGCTGAAC+AGG | - | chr1.1:26569427-26569446 | None:intergenic | 55.0% | |
| ACCAGCATGACTTCTGGGTC+AGG | + | chr1.1:26569184-26569203 | MS.gene65930:intron | 55.0% | |
| ACCTGACCCAGAAGTCATGC+TGG | - | chr1.1:26569188-26569207 | None:intergenic | 55.0% | |
| CACCCGCTAACTTAGGGTCA+TGG | - | chr1.1:26568867-26568886 | None:intergenic | 55.0% | |
| CACCTTCAACCTTGCACCTC+TGG | - | chr1.1:26568492-26568511 | None:intergenic | 55.0% | |
| ! | CAGAGGTGCAAGGTTGAAGG+TGG | + | chr1.1:26568490-26568509 | MS.gene65930:intron | 55.0% |
| ! | TGCCAGAGGTGCAAGGTTGA+AGG | + | chr1.1:26568487-26568506 | MS.gene65930:intron | 55.0% |
| ACTCCTGTTCAGCTCGCGCT+TGG | + | chr1.1:26569421-26569440 | MS.gene65930:CDS | 60.0% | |
| TCCTATTCCCCACTAGGCGG+CGG | + | chr1.1:26568986-26569005 | MS.gene65930:CDS | 60.0% | |
| ! | AGAGTGTTCCGCCGCCTAGT+GGG | - | chr1.1:26568997-26569016 | None:intergenic | 60.0% |
| CTAGGCGGCGGAACACTCTC+TGG | + | chr1.1:26568998-26569017 | MS.gene65930:CDS | 65.0% | |
| GAGTGTTCCGCCGCCTAGTG+GGG | - | chr1.1:26568996-26569015 | None:intergenic | 65.0% | |
| TCCGCCGCCTAGTGGGGAAT+AGG | - | chr1.1:26568990-26569009 | None:intergenic | 65.0% | |
| !! | GAGAGTGTTCCGCCGCCTAG+TGG | - | chr1.1:26568998-26569017 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 26568069 | 26569615 | 26568069 | ID=MS.gene65930 |
| chr1.1 | mRNA | 26568069 | 26569615 | 26568069 | ID=MS.gene65930.t1;Parent=MS.gene65930 |
| chr1.1 | exon | 26568069 | 26568162 | 26568069 | ID=MS.gene65930.t1.exon1;Parent=MS.gene65930.t1 |
| chr1.1 | CDS | 26568069 | 26568162 | 26568069 | ID=cds.MS.gene65930.t1;Parent=MS.gene65930.t1 |
| chr1.1 | exon | 26568936 | 26569114 | 26568936 | ID=MS.gene65930.t1.exon2;Parent=MS.gene65930.t1 |
| chr1.1 | CDS | 26568936 | 26569114 | 26568936 | ID=cds.MS.gene65930.t1;Parent=MS.gene65930.t1 |
| chr1.1 | exon | 26569376 | 26569615 | 26569376 | ID=MS.gene65930.t1.exon3;Parent=MS.gene65930.t1 |
| chr1.1 | CDS | 26569376 | 26569615 | 26569376 | ID=cds.MS.gene65930.t1;Parent=MS.gene65930.t1 |
| Gene Sequence |
| Protein sequence |
