AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67468

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67468.t1 MTR_5g022560 96.802 344 11 0 1 344 1 344 0.0 702
MS.gene67468.t1 MTR_4g079770 89.595 346 33 3 1 344 1 345 0.0 641
MS.gene67468.t1 MTR_4g107930 88.986 345 37 1 1 344 1 345 0.0 640
MS.gene67468.t1 MTR_4g047610 90.116 344 33 1 1 344 1 343 0.0 635
MS.gene67468.t1 MTR_4g079470 89.538 325 32 2 21 344 22 345 0.0 606
MS.gene67468.t1 MTR_4g079800 86.769 325 41 2 21 344 22 345 0.0 590
MS.gene67468.t1 MTR_2g075830 75.291 344 82 2 1 344 1 341 0.0 526
MS.gene67468.t1 MTR_4g080700 66.049 324 98 6 25 344 25 340 2.43e-156 442
MS.gene67468.t1 MTR_4g080730 62.751 349 116 7 1 344 1 340 9.02e-156 440
MS.gene67468.t1 MTR_4g080360 53.687 339 152 4 8 344 7 342 1.12e-132 382
MS.gene67468.t1 MTR_2g083930 54.006 337 142 4 12 342 13 342 3.03e-131 378
MS.gene67468.t1 MTR_4g104370 55.394 343 142 9 6 342 5 342 6.08e-128 370
MS.gene67468.t1 MTR_3g075390 53.079 341 144 7 14 342 7 343 5.32e-125 363
MS.gene67468.t1 MTR_4g079440 55.340 309 132 3 34 342 41 343 6.22e-123 357
MS.gene67468.t1 MTR_7g078600 57.742 310 120 6 34 342 37 336 4.32e-121 352
MS.gene67468.t1 MTR_2g090890 51.032 339 152 6 10 342 5 335 1.11e-119 349
MS.gene67468.t1 MTR_1g107550 54.969 322 129 8 32 342 38 354 3.02e-118 350
MS.gene67468.t1 MTR_7g079230 51.020 343 160 6 1 343 1 335 3.37e-117 342
MS.gene67468.t1 MTR_3g116080 52.367 338 148 7 10 342 17 346 4.45e-117 342
MS.gene67468.t1 MTR_4g094918 49.263 339 162 6 10 342 6 340 2.09e-115 338
MS.gene67468.t1 MTR_3g102220 51.682 327 140 7 27 342 41 360 9.55e-113 336
MS.gene67468.t1 MTR_1g018840 49.432 352 149 8 8 342 21 360 6.80e-112 333
MS.gene67468.t1 MTR_1g018840 49.432 352 149 8 8 342 21 360 1.11e-111 333
MS.gene67468.t1 MTR_2g015850 54.483 290 125 5 55 342 78 362 4.79e-101 302
MS.gene67468.t1 MTR_3g112430 49.677 310 143 5 40 342 37 340 6.54e-100 302
MS.gene67468.t1 MTR_2g016180 46.497 314 152 8 37 342 49 354 3.93e-87 271
MS.gene67468.t1 MTR_2g016270 46.624 311 141 8 37 342 49 339 2.70e-85 266
MS.gene67468.t1 MTR_2g067900 46.372 317 149 10 38 341 15 323 1.43e-79 246
MS.gene67468.t1 MTR_2g067560 46.417 321 141 14 38 338 15 324 9.66e-75 248
MS.gene67468.t1 MTR_2g064475 41.618 346 148 15 38 341 15 348 1.83e-74 234
MS.gene67468.t1 MTR_4g125300 41.694 307 162 10 41 342 53 347 1.21e-69 221
MS.gene67468.t1 MTR_2g015920 40.373 322 172 12 31 342 46 357 3.89e-69 221
MS.gene67468.t1 MTR_7g078630 45.296 287 115 6 28 303 695 950 1.09e-68 231
MS.gene67468.t1 MTR_4g065077 39.564 321 175 9 32 342 44 355 1.58e-68 219
MS.gene67468.t1 MTR_2g066980 35.854 357 168 13 7 342 1 317 8.87e-67 213
MS.gene67468.t1 MTR_2g015930 39.683 315 174 10 37 342 50 357 1.92e-65 211
MS.gene67468.t1 MTR_4g071060 39.564 321 165 11 37 340 45 353 4.95e-65 210
MS.gene67468.t1 MTR_1g023210 37.278 338 169 12 23 335 33 352 8.42e-63 204
MS.gene67468.t1 MTR_1g023810 41.852 270 131 8 75 341 15 261 9.34e-62 198
MS.gene67468.t1 MTR_8g086470 37.304 319 169 9 32 342 60 355 5.64e-60 197
MS.gene67468.t1 MTR_1g094135 35.294 357 196 10 7 340 19 363 2.25e-59 196
MS.gene67468.t1 MTR_4g072790 33.333 324 168 11 25 340 34 317 3.48e-44 154
MS.gene67468.t1 MTR_2g015840 50.993 151 68 4 16 161 7 156 8.21e-43 149
MS.gene67468.t1 MTR_2g015840 56.757 111 47 1 232 342 161 270 9.06e-36 131
MS.gene67468.t1 MTR_4g072340 32.722 327 170 11 25 340 34 321 4.57e-42 149
MS.gene67468.t1 MTR_4g073660 32.722 327 170 11 25 340 33 320 5.34e-42 149
MS.gene67468.t1 MTR_7g078580 63.265 98 35 1 245 342 4 100 3.00e-40 138
MS.gene67468.t1 MTR_7g079130 68.889 90 28 0 253 342 7 96 1.50e-39 135
MS.gene67468.t1 MTR_1g025450 39.891 183 83 8 120 296 47 208 3.29e-32 126
MS.gene67468.t1 MTR_7g078310 45.000 140 68 2 82 219 115 247 1.12e-29 114
MS.gene67468.t1 MTR_2g016380 46.491 114 56 3 232 342 23 134 1.24e-25 103
MS.gene67468.t1 MTR_7g111060 27.309 249 149 7 112 335 89 330 1.19e-22 97.4
MS.gene67468.t1 MTR_7g079260 59.722 72 13 1 269 340 7 62 3.81e-22 90.1
MS.gene67468.t1 MTR_3g029560 26.506 249 151 7 98 342 16 236 6.26e-22 93.2
MS.gene67468.t1 MTR_7g111050 29.362 235 136 7 132 343 110 337 2.24e-21 94.0
MS.gene67468.t1 MTR_8g087510 41.985 131 69 5 167 295 23 148 6.40e-21 89.0
MS.gene67468.t1 MTR_2g047960 48.235 85 43 1 135 219 7 90 4.23e-18 79.0
MS.gene67468.t1 MTR_3g082370 26.471 204 130 5 131 319 5 203 5.10e-17 79.3
MS.gene67468.t1 MTR_7g111050 27.179 195 118 5 132 305 105 296 7.12e-12 65.9
MS.gene67468.t1 MTR_1g042480 34.043 94 59 2 9 101 7 98 5.38e-11 60.1
MS.gene67468.t1 MTR_1g042360 34.043 94 59 2 9 101 7 98 5.38e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67468.t1 AT5G45890 54.360 344 147 4 7 342 3 344 6.80e-135 388
MS.gene67468.t1 AT5G50260 53.913 345 135 6 14 342 5 341 2.90e-128 371
MS.gene67468.t1 AT3G48340 53.890 347 136 8 12 342 4 342 2.35e-123 359
MS.gene67468.t1 AT2G34080 50.292 342 159 6 10 344 8 345 1.72e-120 351
MS.gene67468.t1 AT3G49340 50.877 342 143 7 20 344 8 341 8.39e-119 347
MS.gene67468.t1 AT3G19390 50.606 330 159 4 14 342 18 344 3.59e-118 349
MS.gene67468.t1 AT4G35350 53.205 312 135 5 35 342 47 351 1.48e-115 339
MS.gene67468.t1 AT2G27420 48.563 348 158 6 14 344 5 348 1.72e-115 338
MS.gene67468.t1 AT5G43060 53.374 326 138 7 24 342 34 352 2.24e-115 342
MS.gene67468.t1 AT3G48350 55.340 309 129 7 39 342 38 342 1.05e-113 335
MS.gene67468.t1 AT1G29090 47.458 354 168 8 4 344 7 355 5.69e-112 330
MS.gene67468.t1 AT3G19400 50.980 306 146 4 39 342 44 347 1.26e-111 329
MS.gene67468.t1 AT1G06260 50.588 340 155 7 9 342 9 341 3.28e-111 327
MS.gene67468.t1 AT4G36880 50.926 324 141 6 32 342 42 360 5.91e-111 328
MS.gene67468.t1 AT1G47128 51.456 309 138 7 39 342 50 351 1.68e-110 330
MS.gene67468.t1 AT1G20850 52.090 311 137 5 37 342 49 352 2.31e-110 326
MS.gene67468.t1 AT1G29080 47.633 338 165 7 15 344 13 346 3.32e-107 317
MS.gene67468.t1 AT1G09850 49.675 308 152 3 35 342 28 332 4.09e-102 308
MS.gene67468.t1 AT4G23520 49.838 309 141 9 40 342 48 348 4.98e-102 305
MS.gene67468.t1 AT4G11310 47.573 309 149 6 40 342 50 351 4.81e-99 297
MS.gene67468.t1 AT4G11320 46.602 309 152 6 40 342 57 358 4.28e-98 295
MS.gene67468.t1 AT4G11320 46.602 309 152 6 40 342 57 358 4.28e-98 295
MS.gene67468.t1 AT3G43960 44.681 329 175 6 18 342 20 345 6.44e-90 274
MS.gene67468.t1 AT1G29110 43.302 321 159 7 29 342 28 332 2.18e-87 266
MS.gene67468.t1 AT4G35350 50.607 247 111 5 35 277 47 286 2.53e-82 252
MS.gene67468.t1 AT3G19400 49.378 241 119 3 39 277 44 283 8.06e-79 243
MS.gene67468.t1 AT3G48350 52.869 244 106 7 39 277 38 277 9.34e-76 235
MS.gene67468.t1 AT5G60360 43.648 307 156 10 41 342 61 355 7.69e-73 230
MS.gene67468.t1 AT5G60360 43.322 307 156 11 41 342 61 354 2.56e-70 223
MS.gene67468.t1 AT3G45310 41.694 307 162 10 41 342 61 355 1.16e-68 219
MS.gene67468.t1 AT5G60360 42.809 299 154 10 41 334 61 347 2.28e-68 218
MS.gene67468.t1 AT3G45310 41.368 307 162 11 41 342 61 354 4.40e-66 213
MS.gene67468.t1 AT4G39090 39.172 314 158 11 46 340 58 357 7.84e-64 207
MS.gene67468.t1 AT2G21430 36.158 354 189 12 7 335 8 349 1.65e-63 206
MS.gene67468.t1 AT4G16190 39.365 315 162 10 44 340 60 363 2.64e-59 195
MS.gene67468.t1 AT3G54940 37.975 316 159 10 42 335 54 354 2.06e-58 193
MS.gene67468.t1 AT3G54940 38.428 229 124 5 42 259 54 276 6.80e-44 152
MS.gene67468.t1 AT1G02305 26.446 363 198 15 6 335 7 333 1.11e-23 100
MS.gene67468.t1 AT4G01610 26.573 286 178 8 75 335 52 330 4.24e-22 96.3
MS.gene67468.t1 AT4G01610 26.224 286 179 8 75 335 52 330 5.20e-21 93.2
MS.gene67468.t1 AT1G02300 28.910 211 124 5 145 335 146 350 4.77e-19 87.8
MS.gene67468.t1 AT2G22160 42.718 103 54 3 43 145 1 98 3.63e-17 76.6

Find 86 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAATTGCTACAGAAAT+TGG 0.238620 5.1:-13537162 None:intergenic
AATATGATATAATTGATTAT+TGG 0.245014 5.1:-13536304 None:intergenic
TACAAAAGTGGTGTATTTAC+TGG 0.253916 5.1:+13537207 MS.gene67468:CDS
TACATTGAAGCTTTCAATAA+TGG 0.255324 5.1:+13536501 MS.gene67468:CDS
AAGTTTGGCATTTAAGCATT+AGG 0.260813 5.1:-13537417 None:intergenic
TGTTCCATCAACACCTTGAT+AGG 0.273901 5.1:-13537037 None:intergenic
TTCCTCCAATCCACTGTAGA+TGG 0.300644 5.1:-13536675 None:intergenic
ATCTATGCAGCTACTATTAC+CGG 0.345117 5.1:+13537081 MS.gene67468:CDS
TTGCAATGCTTGCTCATTGT+TGG 0.345681 5.1:-13537121 None:intergenic
TGATTAATGCCTAGTTTGTA+TGG 0.354887 5.1:-13536537 None:intergenic
AGTTTGGCATTTAAGCATTA+GGG 0.356273 5.1:-13537416 None:intergenic
GAACTCATGGGGAACTGATT+GGG 0.362958 5.1:+13537314 MS.gene67468:CDS
AAATTCATCATTCAAAATCA+TGG 0.364764 5.1:+13536991 MS.gene67468:CDS
GCAACCTTGGTCCACACCTT+TGG 0.378000 5.1:-13536941 None:intergenic
TACCCCTATCAAGGTGTTGA+TGG 0.400072 5.1:+13537033 MS.gene67468:CDS
TCAATTATATCATATTTCAT+TGG 0.405472 5.1:+13536311 MS.gene67468:CDS
GGTGTCACTGCCGTAGGTTA+TGG 0.419357 5.1:+13537255 MS.gene67468:CDS
AGGTTGCGAGGGTGGTCTAA+TGG 0.427677 5.1:+13536957 MS.gene67468:CDS
GGTAATAGTAGCTGCATAGA+TGG 0.434640 5.1:-13537079 None:intergenic
GCTCTGTGGCATTGCAATGC+AGG 0.434661 5.1:+13537386 MS.gene67468:CDS
AGAACTCATGGGGAACTGAT+TGG 0.436487 5.1:+13537313 MS.gene67468:CDS
AATGCTTGCTCATTGTTGGC+AGG 0.438570 5.1:-13537117 None:intergenic
CATTGGCCTTGGTTCTTCAC+AGG 0.447016 5.1:-13536714 None:intergenic
GACACTTACCACATTGGCCT+TGG 0.449261 5.1:-13536725 None:intergenic
ATATCATATTTCATTGGCAT+TGG 0.451673 5.1:+13536317 MS.gene67468:CDS
GGAATTCATAAGTTGAGTAC+TGG 0.452855 5.1:+13536874 MS.gene67468:CDS
AGGATACATTATGATGCAAA+GGG 0.457248 5.1:+13537344 MS.gene67468:CDS
GGTTATGGTGTTAGTAATGA+TGG 0.466813 5.1:+13537270 MS.gene67468:CDS
GTTCTTAACCAACCAATACT+TGG 0.469107 5.1:-13537295 None:intergenic
GGAACTGATTGGGGTGAAGA+AGG 0.474210 5.1:+13537324 MS.gene67468:CDS
TCTCATGCATGGAACCATCT+TGG 0.477831 5.1:-13536386 None:intergenic
TAAGTTGAGTACTGGAAAGT+TGG 0.485027 5.1:+13536882 MS.gene67468:CDS
AGATGCTACAAACTCCTCAT+TGG 0.495942 5.1:-13536574 None:intergenic
ATTGGTTGGTTAAGAACTCA+TGG 0.497126 5.1:+13537301 MS.gene67468:CDS
GAGCAGTGGATGAGTCACTA+TGG 0.500053 5.1:+13536414 MS.gene67468:CDS
CAATTCCATCTACAGTGGAT+TGG 0.509500 5.1:+13536670 MS.gene67468:CDS
TCTGCTGTTGCAGCAACTGA+AGG 0.516542 5.1:+13536853 MS.gene67468:CDS
GTAATGATGGAACCAAGTAT+TGG 0.517960 5.1:+13537283 MS.gene67468:CDS
GTGGACCAAGGTTGCGAGGG+TGG 0.519583 5.1:+13536949 MS.gene67468:CDS
AGCATCTAGGAACAAATTCA+AGG 0.524056 5.1:+13536590 MS.gene67468:CDS
CTGTAGCAATTGATGCTAGT+GGG 0.531888 5.1:+13537169 MS.gene67468:CDS
CTGCTCATGCCTCTCATGCA+TGG 0.532697 5.1:-13536397 None:intergenic
TTCCATCTACAGTGGATTGG+AGG 0.533019 5.1:+13536673 MS.gene67468:CDS
TGGTTCATGCGGAACTGAGT+TGG 0.533466 5.1:+13537227 MS.gene67468:CDS
ACAGTGGATTGGAGGAAGAA+AGG 0.534477 5.1:+13536681 MS.gene67468:CDS
AAGGATACATTATGATGCAA+AGG 0.535444 5.1:+13537343 MS.gene67468:CDS
GTTCCATCAACACCTTGATA+GGG 0.537305 5.1:-13537036 None:intergenic
TAATTGATTATTGGCAGCCA+TGG 0.544682 5.1:-13536295 None:intergenic
TTAGACCACCCTCGCAACCT+TGG 0.545380 5.1:-13536954 None:intergenic
AGGGGAGTTGAAGCTGCTGA+AGG 0.548793 5.1:+13537363 MS.gene67468:CDS
TCTGTAGCAATTGATGCTAG+TGG 0.551551 5.1:+13537168 MS.gene67468:CDS
TAGATAGACACTTACCACAT+TGG 0.554580 5.1:-13536731 None:intergenic
ATGAGGAGTTTGTAGCATCT+AGG 0.557730 5.1:+13536577 MS.gene67468:CDS
GAAGCTCAATACCCCTATCA+AGG 0.559311 5.1:+13537024 MS.gene67468:CDS
AACTCATGGGGAACTGATTG+GGG 0.563189 5.1:+13537315 MS.gene67468:CDS
TGATGGAACCAAGTATTGGT+TGG 0.568906 5.1:+13537287 MS.gene67468:CDS
TTGGTTGGTTAAGAACTCAT+GGG 0.574582 5.1:+13537302 MS.gene67468:CDS
ACTTCTCGCACTCTCCAAGA+TGG 0.576062 5.1:+13536372 MS.gene67468:CDS
ATGCTTGCTCATTGTTGGCA+GGG 0.585035 5.1:-13537116 None:intergenic
AGAAATTGGTTGATTTGCCA+CGG 0.587106 5.1:-13537148 None:intergenic
AGTAACAAACCATACAAACT+AGG 0.588321 5.1:+13536528 MS.gene67468:CDS
TGCGGAACTGAGTTGGATCA+CGG 0.591647 5.1:+13537234 MS.gene67468:CDS
AGGTGTGGACCAAGGTTGCG+AGG 0.594152 5.1:+13536945 MS.gene67468:CDS
GGGGAGTTGAAGCTGCTGAA+GGG 0.599415 5.1:+13537364 MS.gene67468:CDS
TTCCATCAACACCTTGATAG+GGG 0.602425 5.1:-13537035 None:intergenic
CTTGTTGATTGCGACACCAA+AGG 0.605991 5.1:+13536925 MS.gene67468:CDS
GGCAGGGACATCTTCATACC+CGG 0.606676 5.1:-13537100 None:intergenic
GCATCTAGGAACAAATTCAA+GGG 0.615159 5.1:+13536591 MS.gene67468:CDS
TGCATGAGAGGCATGAGCAG+TGG 0.619804 5.1:+13536400 MS.gene67468:CDS
ATTACTAACACCATAACCTA+CGG 0.625557 5.1:-13537265 None:intergenic
GGTGTGGACCAAGGTTGCGA+GGG 0.629368 5.1:+13536946 MS.gene67468:CDS
GATCACGGTGTCACTGCCGT+AGG 0.641748 5.1:+13537249 MS.gene67468:CDS
GGTGTATTTACTGGTTCATG+CGG 0.645001 5.1:+13537216 MS.gene67468:CDS
TGGTTGGTTAAGAACTCATG+GGG 0.647156 5.1:+13537303 MS.gene67468:CDS
TCTATGCAGCTACTATTACC+GGG 0.649142 5.1:+13537082 MS.gene67468:CDS
AAGATGGTTCCATGCATGAG+AGG 0.652611 5.1:+13536388 MS.gene67468:CDS
CTACAAACTCCTCATTGGTG+AGG 0.661600 5.1:-13536569 None:intergenic
ATTTGCAGACCTCACCAATG+AGG 0.664553 5.1:+13536560 MS.gene67468:CDS
GTGAAGAACCAAGGCCAATG+TGG 0.667923 5.1:+13536717 MS.gene67468:CDS
AAGTGCAATTCCATCTACAG+TGG 0.669087 5.1:+13536665 MS.gene67468:CDS
GACACCAAAGGTGTGGACCA+AGG 0.670622 5.1:+13536937 MS.gene67468:CDS
TGATTGCGACACCAAAGGTG+TGG 0.678453 5.1:+13536930 MS.gene67468:CDS
ATATGTGCTCTTCAATCACA+AGG 0.681864 5.1:+13536616 MS.gene67468:CDS
GAAGCTGCTGAAGGGCTCTG+TGG 0.682304 5.1:+13537372 MS.gene67468:CDS
GTGACACCTGTGAAGAACCA+AGG 0.693484 5.1:+13536708 MS.gene67468:CDS
GGATACATTATGATGCAAAG+GGG 0.728766 5.1:+13537345 MS.gene67468:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGATATAATTGATTAT+TGG - chr5.1:13536307-13536326 None:intergenic 10.0%
!! TCAATTATATCATATTTCAT+TGG + chr5.1:13536311-13536330 MS.gene67468:CDS 15.0%
!! AAATTCATCATTCAAAATCA+TGG + chr5.1:13536991-13537010 MS.gene67468:CDS 20.0%
!!! AATTGAATTTTCATCTAACT+CGG + chr5.1:13536788-13536807 MS.gene67468:intron 20.0%
!!! AATTTTAACTTGCATTTTGT+AGG + chr5.1:13536814-13536833 MS.gene67468:intron 20.0%
! ATATCATATTTCATTGGCAT+TGG + chr5.1:13536317-13536336 MS.gene67468:CDS 25.0%
! TACATTGAAGCTTTCAATAA+TGG + chr5.1:13536501-13536520 MS.gene67468:CDS 25.0%
!! ATTGAATTTTCATCTAACTC+GGG + chr5.1:13536789-13536808 MS.gene67468:intron 25.0%
!! GACTTTCAATTTTACAAAAG+TGG + chr5.1:13537195-13537214 MS.gene67468:CDS 25.0%
AAGGATACATTATGATGCAA+AGG + chr5.1:13537343-13537362 MS.gene67468:CDS 30.0%
AGGATACATTATGATGCAAA+GGG + chr5.1:13537344-13537363 MS.gene67468:CDS 30.0%
AGTAACAAACCATACAAACT+AGG + chr5.1:13536528-13536547 MS.gene67468:CDS 30.0%
ATTACTAACACCATAACCTA+CGG - chr5.1:13537268-13537287 None:intergenic 30.0%
TACAAAAGTGGTGTATTTAC+TGG + chr5.1:13537207-13537226 MS.gene67468:CDS 30.0%
! TGATTAATGCCTAGTTTGTA+TGG - chr5.1:13536540-13536559 None:intergenic 30.0%
AGCATCTAGGAACAAATTCA+AGG + chr5.1:13536590-13536609 MS.gene67468:CDS 35.0%
ATATGTGCTCTTCAATCACA+AGG + chr5.1:13536616-13536635 MS.gene67468:CDS 35.0%
ATCTATGCAGCTACTATTAC+CGG + chr5.1:13537081-13537100 MS.gene67468:CDS 35.0%
GCATCAATTGCTACAGAAAT+TGG - chr5.1:13537165-13537184 None:intergenic 35.0%
GCATCTAGGAACAAATTCAA+GGG + chr5.1:13536591-13536610 MS.gene67468:CDS 35.0%
GGATACATTATGATGCAAAG+GGG + chr5.1:13537345-13537364 MS.gene67468:CDS 35.0%
GTTCTTAACCAACCAATACT+TGG - chr5.1:13537298-13537317 None:intergenic 35.0%
TAGATAGACACTTACCACAT+TGG - chr5.1:13536734-13536753 None:intergenic 35.0%
! ATTGGTTGGTTAAGAACTCA+TGG + chr5.1:13537301-13537320 MS.gene67468:CDS 35.0%
! GCATTTTGTAGGATGTTGTT+GGG + chr5.1:13536825-13536844 MS.gene67468:intron 35.0%
! GGAATTCATAAGTTGAGTAC+TGG + chr5.1:13536874-13536893 MS.gene67468:CDS 35.0%
! GGTTATGGTGTTAGTAATGA+TGG + chr5.1:13537270-13537289 MS.gene67468:CDS 35.0%
! GTAATGATGGAACCAAGTAT+TGG + chr5.1:13537283-13537302 MS.gene67468:CDS 35.0%
! TGCATTTTGTAGGATGTTGT+TGG + chr5.1:13536824-13536843 MS.gene67468:intron 35.0%
! TTGGTTGGTTAAGAACTCAT+GGG + chr5.1:13537302-13537321 MS.gene67468:CDS 35.0%
!! AGAAATTGGTTGATTTGCCA+CGG - chr5.1:13537151-13537170 None:intergenic 35.0%
!! TAAGTTGAGTACTGGAAAGT+TGG + chr5.1:13536882-13536901 MS.gene67468:CDS 35.0%
AAGTGCAATTCCATCTACAG+TGG + chr5.1:13536665-13536684 MS.gene67468:CDS 40.0%
AGATGCTACAAACTCCTCAT+TGG - chr5.1:13536577-13536596 None:intergenic 40.0%
ATGAGGAGTTTGTAGCATCT+AGG + chr5.1:13536577-13536596 MS.gene67468:CDS 40.0%
CAATTCCATCTACAGTGGAT+TGG + chr5.1:13536670-13536689 MS.gene67468:CDS 40.0%
CTGTAGCAATTGATGCTAGT+GGG + chr5.1:13537169-13537188 MS.gene67468:CDS 40.0%
GGTAATAGTAGCTGCATAGA+TGG - chr5.1:13537082-13537101 None:intergenic 40.0%
GTTCCATCAACACCTTGATA+GGG - chr5.1:13537039-13537058 None:intergenic 40.0%
TCTATGCAGCTACTATTACC+GGG + chr5.1:13537082-13537101 MS.gene67468:CDS 40.0%
TCTGTAGCAATTGATGCTAG+TGG + chr5.1:13537168-13537187 MS.gene67468:CDS 40.0%
TGTTCCATCAACACCTTGAT+AGG - chr5.1:13537040-13537059 None:intergenic 40.0%
TTCCATCAACACCTTGATAG+GGG - chr5.1:13537038-13537057 None:intergenic 40.0%
TTGCAATGCTTGCTCATTGT+TGG - chr5.1:13537124-13537143 None:intergenic 40.0%
! TGGTTGGTTAAGAACTCATG+GGG + chr5.1:13537303-13537322 MS.gene67468:CDS 40.0%
!! GGTGTATTTACTGGTTCATG+CGG + chr5.1:13537216-13537235 MS.gene67468:CDS 40.0%
!! TGATGGAACCAAGTATTGGT+TGG + chr5.1:13537287-13537306 MS.gene67468:CDS 40.0%
!!! ATTGGCATTGGTTTTCTGCT+TGG + chr5.1:13536329-13536348 MS.gene67468:CDS 40.0%
!!! TTGGCATTGGTTTTCTGCTT+GGG + chr5.1:13536330-13536349 MS.gene67468:CDS 40.0%
AACTCATGGGGAACTGATTG+GGG + chr5.1:13537315-13537334 MS.gene67468:CDS 45.0%
AAGATGGTTCCATGCATGAG+AGG + chr5.1:13536388-13536407 MS.gene67468:CDS 45.0%
AATGCTTGCTCATTGTTGGC+AGG - chr5.1:13537120-13537139 None:intergenic 45.0%
AGAACTCATGGGGAACTGAT+TGG + chr5.1:13537313-13537332 MS.gene67468:CDS 45.0%
ATGCTTGCTCATTGTTGGCA+GGG - chr5.1:13537119-13537138 None:intergenic 45.0%
ATTTGCAGACCTCACCAATG+AGG + chr5.1:13536560-13536579 MS.gene67468:CDS 45.0%
CTACAAACTCCTCATTGGTG+AGG - chr5.1:13536572-13536591 None:intergenic 45.0%
GAACTCATGGGGAACTGATT+GGG + chr5.1:13537314-13537333 MS.gene67468:CDS 45.0%
GAAGCTCAATACCCCTATCA+AGG + chr5.1:13537024-13537043 MS.gene67468:CDS 45.0%
TCTCATGCATGGAACCATCT+TGG - chr5.1:13536389-13536408 None:intergenic 45.0%
TTCCTCCAATCCACTGTAGA+TGG - chr5.1:13536678-13536697 None:intergenic 45.0%
! CTTGTTGATTGCGACACCAA+AGG + chr5.1:13536925-13536944 MS.gene67468:CDS 45.0%
! GGTTTTCTGCTTGGGATTGT+GGG + chr5.1:13536338-13536357 MS.gene67468:CDS 45.0%
! TGGTTTTCTGCTTGGGATTG+TGG + chr5.1:13536337-13536356 MS.gene67468:CDS 45.0%
!! ACAGTGGATTGGAGGAAGAA+AGG + chr5.1:13536681-13536700 MS.gene67468:CDS 45.0%
!! TACCCCTATCAAGGTGTTGA+TGG + chr5.1:13537033-13537052 MS.gene67468:CDS 45.0%
!! TTCCATCTACAGTGGATTGG+AGG + chr5.1:13536673-13536692 MS.gene67468:CDS 45.0%
ACTTCTCGCACTCTCCAAGA+TGG + chr5.1:13536372-13536391 MS.gene67468:CDS 50.0%
GAGCAGTGGATGAGTCACTA+TGG + chr5.1:13536414-13536433 MS.gene67468:CDS 50.0%
GGAACTGATTGGGGTGAAGA+AGG + chr5.1:13537324-13537343 MS.gene67468:CDS 50.0%
GTGAAGAACCAAGGCCAATG+TGG + chr5.1:13536717-13536736 MS.gene67468:CDS 50.0%
GTGACACCTGTGAAGAACCA+AGG + chr5.1:13536708-13536727 MS.gene67468:CDS 50.0%
TCTGCTGTTGCAGCAACTGA+AGG + chr5.1:13536853-13536872 MS.gene67468:CDS 50.0%
TGATTGCGACACCAAAGGTG+TGG + chr5.1:13536930-13536949 MS.gene67468:CDS 50.0%
TGGTTCATGCGGAACTGAGT+TGG + chr5.1:13537227-13537246 MS.gene67468:CDS 50.0%
! GACACTTACCACATTGGCCT+TGG - chr5.1:13536728-13536747 None:intergenic 50.0%
! GCAAGCATTGCAAAAAGCCG+TGG + chr5.1:13537131-13537150 MS.gene67468:CDS 50.0%
! TGCGGAACTGAGTTGGATCA+CGG + chr5.1:13537234-13537253 MS.gene67468:CDS 50.0%
!! CATTGGCCTTGGTTCTTCAC+AGG - chr5.1:13536717-13536736 None:intergenic 50.0%
AGGGGAGTTGAAGCTGCTGA+AGG + chr5.1:13537363-13537382 MS.gene67468:CDS 55.0%
AGGTTGCGAGGGTGGTCTAA+TGG + chr5.1:13536957-13536976 MS.gene67468:CDS 55.0%
CTGCTCATGCCTCTCATGCA+TGG - chr5.1:13536400-13536419 None:intergenic 55.0%
GCAACCTTGGTCCACACCTT+TGG - chr5.1:13536944-13536963 None:intergenic 55.0%
GCTCTGTGGCATTGCAATGC+AGG + chr5.1:13537386-13537405 MS.gene67468:CDS 55.0%
GGCAGGGACATCTTCATACC+CGG - chr5.1:13537103-13537122 None:intergenic 55.0%
GGGGAGTTGAAGCTGCTGAA+GGG + chr5.1:13537364-13537383 MS.gene67468:CDS 55.0%
TTAGACCACCCTCGCAACCT+TGG - chr5.1:13536957-13536976 None:intergenic 55.0%
! GACACCAAAGGTGTGGACCA+AGG + chr5.1:13536937-13536956 MS.gene67468:CDS 55.0%
! TGCATGAGAGGCATGAGCAG+TGG + chr5.1:13536400-13536419 MS.gene67468:CDS 55.0%
!! GGTGTCACTGCCGTAGGTTA+TGG + chr5.1:13537255-13537274 MS.gene67468:CDS 55.0%
AGGTGTGGACCAAGGTTGCG+AGG + chr5.1:13536945-13536964 MS.gene67468:CDS 60.0%
GAAGCTGCTGAAGGGCTCTG+TGG + chr5.1:13537372-13537391 MS.gene67468:CDS 60.0%
GGTGTGGACCAAGGTTGCGA+GGG + chr5.1:13536946-13536965 MS.gene67468:CDS 60.0%
!! GATCACGGTGTCACTGCCGT+AGG + chr5.1:13537249-13537268 MS.gene67468:CDS 60.0%
GTGGACCAAGGTTGCGAGGG+TGG + chr5.1:13536949-13536968 MS.gene67468:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 13536297 13537428 13536297 ID=MS.gene67468
chr5.1 mRNA 13536297 13537428 13536297 ID=MS.gene67468.t1;Parent=MS.gene67468
chr5.1 exon 13536297 13536738 13536297 ID=MS.gene67468.t1.exon1;Parent=MS.gene67468.t1
chr5.1 CDS 13536297 13536738 13536297 ID=cds.MS.gene67468.t1;Parent=MS.gene67468.t1
chr5.1 exon 13536836 13537428 13536836 ID=MS.gene67468.t1.exon2;Parent=MS.gene67468.t1
chr5.1 CDS 13536836 13537428 13536836 ID=cds.MS.gene67468.t1;Parent=MS.gene67468.t1
Gene Sequence

>MS.gene67468

ATGGCTGCCAATAATCAATTATATCATATTTCATTGGCATTGGTTTTCTGCTTGGGATTGTGGGCTATTCAAGTCACTTCTCGCACTCTCCAAGATGGTTCCATGCATGAGAGGCATGAGCAGTGGATGAGTCACTATGGCAAAGTCTATAATGATCATCAAGAACGAGAGAAGCGTTTCAAGATATTCACAGAAAACATGAAATACATTGAAGCTTTCAATAATGGTGACAGTAACAAACCATACAAACTAGGCATTAATCAATTTGCAGACCTCACCAATGAGGAGTTTGTAGCATCTAGGAACAAATTCAAGGGACATATGTGCTCTTCAATCACAAGGACAACTACTTTTAAGTATGAAAATGTAAGTGCAATTCCATCTACAGTGGATTGGAGGAAGAAAGGAGCAGTGACACCTGTGAAGAACCAAGGCCAATGTGGTAAGTGTCTATCTAAAAACTAATGCATTTAATTCAATATGTGATCAAAAATTGAATTTTCATCTAACTCGGGTAAATTTTAACTTGCATTTTGTAGGATGTTGTTGGGCGTTTTCTGCTGTTGCAGCAACTGAAGGAATTCATAAGTTGAGTACTGGAAAGTTGGTCTCTTTATCAGAACAAGAACTTGTTGATTGCGACACCAAAGGTGTGGACCAAGGTTGCGAGGGTGGTCTAATGGATGATGCTTTCAAATTCATCATTCAAAATCATGGACTCAGCACTGAAGCTCAATACCCCTATCAAGGTGTTGATGGAACATGCAATGCAAACAAAGCATCCATCTATGCAGCTACTATTACCGGGTATGAAGATGTCCCTGCCAACAATGAGCAAGCATTGCAAAAAGCCGTGGCAAATCAACCAATTTCTGTAGCAATTGATGCTAGTGGGTCTGACTTTCAATTTTACAAAAGTGGTGTATTTACTGGTTCATGCGGAACTGAGTTGGATCACGGTGTCACTGCCGTAGGTTATGGTGTTAGTAATGATGGAACCAAGTATTGGTTGGTTAAGAACTCATGGGGAACTGATTGGGGTGAAGAAGGATACATTATGATGCAAAGGGGAGTTGAAGCTGCTGAAGGGCTCTGTGGCATTGCAATGCAGGCATCTTACCCTAATGCTTAA
Protein sequence

>MS.gene67468.t1

MAANNQLYHISLALVFCLGLWAIQVTSRTLQDGSMHERHEQWMSHYGKVYNDHQEREKRFKIFTENMKYIEAFNNGDSNKPYKLGINQFADLTNEEFVASRNKFKGHMCSSITRTTTFKYENVSAIPSTVDWRKKGAVTPVKNQGQCGCCWAFSAVAATEGIHKLSTGKLVSLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLSTEAQYPYQGVDGTCNANKASIYAATITGYEDVPANNEQALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSNDGTKYWLVKNSWGTDWGEEGYIMMQRGVEAAEGLCGIAMQASYPNA