Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68126.t1 | XP_003604084.1 | 96.2 | 314 | 11 | 1 | 1 | 313 | 1 | 314 | 2.30E-177 | 631.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68126.t1 | G7J991 | 96.2 | 314 | 11 | 1 | 1 | 313 | 1 | 314 | 1.7e-177 | 631.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene68126 | 0.808233 | 3.43E-50 | -1.69E-46 |
| MS.gene049181 | MS.gene68126 | -0.808422 | 3.12E-50 | -1.69E-46 |
| MS.gene049182 | MS.gene68126 | -0.834569 | 2.78E-56 | -1.69E-46 |
| MS.gene049232 | MS.gene68126 | 0.823822 | 1.13E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene68126 | 0.835957 | 1.24E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene68126 | 0.831371 | 1.73E-55 | -1.69E-46 |
| MS.gene05010 | MS.gene68126 | 0.828381 | 9.28E-55 | -1.69E-46 |
| MS.gene050163 | MS.gene68126 | 0.802574 | 5.26E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene68126 | 0.824128 | 9.55E-54 | -1.69E-46 |
| MS.gene050323 | MS.gene68126 | 0.812667 | 3.78E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene68126 | 0.82823 | 1.01E-54 | -1.69E-46 |
| MS.gene050496 | MS.gene68126 | 0.830052 | 3.65E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene68126 | 0.851259 | 9.97E-61 | -1.69E-46 |
| MS.gene050518 | MS.gene68126 | 0.85057 | 1.56E-60 | -1.69E-46 |
| MS.gene050612 | MS.gene68126 | 0.851667 | 7.64E-61 | -1.69E-46 |
| MS.gene050675 | MS.gene68126 | 0.821576 | 3.75E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene68126 | 0.820777 | 5.73E-53 | -1.69E-46 |
| MS.gene050876 | MS.gene68126 | 0.862066 | 6.59E-64 | -1.69E-46 |
| MS.gene050904 | MS.gene68126 | 0.80668 | 7.31E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene68126 | 0.855481 | 6.13E-62 | -1.69E-46 |
| MS.gene051317 | MS.gene68126 | 0.813012 | 3.17E-51 | -1.69E-46 |
| MS.gene051959 | MS.gene68126 | -0.808836 | 2.55E-50 | -1.69E-46 |
| MS.gene051960 | MS.gene68126 | -0.81872 | 1.69E-52 | -1.69E-46 |
| MS.gene052004 | MS.gene68126 | 0.802652 | 5.07E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene68126 | 0.808605 | 2.85E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene68126 | 0.813369 | 2.65E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene68126 | 0.811557 | 6.59E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene68126 | 0.867807 | 1.04E-65 | -1.69E-46 |
| MS.gene055134 | MS.gene68126 | -0.832399 | 9.67E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene68126 | 0.830669 | 2.58E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene68126 | 0.811817 | 5.79E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene68126 | 0.80451 | 2.09E-49 | -1.69E-46 |
| MS.gene055634 | MS.gene68126 | 0.850693 | 1.44E-60 | -1.69E-46 |
| MS.gene055748 | MS.gene68126 | 0.801493 | 8.77E-49 | -1.69E-46 |
| MS.gene055750 | MS.gene68126 | 0.809197 | 2.13E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene68126 | 0.831005 | 2.13E-55 | -1.69E-46 |
| MS.gene055776 | MS.gene68126 | 0.881385 | 2.51E-70 | -1.69E-46 |
| MS.gene055849 | MS.gene68126 | 0.883469 | 4.37E-71 | -1.69E-46 |
| MS.gene056185 | MS.gene68126 | -0.814089 | 1.84E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene68126 | 0.829444 | 5.13E-55 | -1.69E-46 |
| MS.gene056510 | MS.gene68126 | 0.85861 | 7.32E-63 | -1.69E-46 |
| MS.gene056657 | MS.gene68126 | 0.818756 | 1.66E-52 | -1.69E-46 |
| MS.gene057001 | MS.gene68126 | -0.815592 | 8.54E-52 | -1.69E-46 |
| MS.gene057148 | MS.gene68126 | 0.830095 | 3.56E-55 | -1.69E-46 |
| MS.gene057684 | MS.gene68126 | 0.821406 | 4.11E-53 | -1.69E-46 |
| MS.gene057687 | MS.gene68126 | 0.810395 | 1.18E-50 | -1.69E-46 |
| MS.gene057872 | MS.gene68126 | 0.809813 | 1.57E-50 | -1.69E-46 |
| MS.gene057986 | MS.gene68126 | 0.812859 | 3.43E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene68126 | 0.812437 | 4.24E-51 | -1.69E-46 |
| MS.gene058719 | MS.gene68126 | 0.826235 | 3.03E-54 | -1.69E-46 |
| MS.gene058773 | MS.gene68126 | 0.840468 | 8.54E-58 | -1.69E-46 |
| MS.gene058774 | MS.gene68126 | 0.834689 | 2.59E-56 | -1.69E-46 |
| MS.gene058775 | MS.gene68126 | 0.810409 | 1.17E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene68126 | 0.85421 | 1.43E-61 | -1.69E-46 |
| MS.gene059026 | MS.gene68126 | 0.81291 | 3.34E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene68126 | 0.834371 | 3.11E-56 | -1.69E-46 |
| MS.gene059837 | MS.gene68126 | 0.846041 | 2.79E-59 | -1.69E-46 |
| MS.gene059865 | MS.gene68126 | 0.857398 | 1.68E-62 | -1.69E-46 |
| MS.gene060703 | MS.gene68126 | 0.835573 | 1.55E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene68126 | 0.806157 | 9.43E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene68126 | 0.819725 | 9.99E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene68126 | 0.837951 | 3.84E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68126.t1 | MTR_3g118320 | 97.771 | 314 | 6 | 1 | 1 | 313 | 1 | 314 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68126.t1 | AT5G17670 | 68.070 | 285 | 84 | 4 | 30 | 313 | 31 | 309 | 7.77e-137 | 390 |
Find 118 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGTATATGCAGCAATTT+GGG | 0.178912 | 3.1:-92938536 | MS.gene68126:CDS |
| CGTCTGTATATGCAGCAATT+TGG | 0.240390 | 3.1:-92938537 | MS.gene68126:CDS |
| AAGAGTGCCACGCCAGTAAT+TGG | 0.244199 | 3.1:+92938686 | None:intergenic |
| CATTCACCTGCTTGTATCCT+TGG | 0.277029 | 3.1:+92938030 | None:intergenic |
| ATAACACCAGGGACGCCTTT+TGG | 0.317246 | 3.1:+92938462 | None:intergenic |
| TCAGAGTTGCCTCCAGCTTC+TGG | 0.320028 | 3.1:+92938790 | None:intergenic |
| TTGGATTTGAGTTTCCAAAA+AGG | 0.331624 | 3.1:+92938168 | None:intergenic |
| TATTTATTGAACCAGGGGTT+AGG | 0.339291 | 3.1:-92938831 | MS.gene68126:intron |
| ACATTGCGTGCTCGCTTTGT+TGG | 0.348023 | 3.1:-92938053 | MS.gene68126:CDS |
| CGATCAAACCAGCGGCATTT+CGG | 0.365710 | 3.1:+92938712 | None:intergenic |
| GGTGAGCATTTGGATGGAAT+TGG | 0.366585 | 3.1:+92938976 | None:intergenic |
| GGAAGTGCAGGCTCAGCATT+TGG | 0.368790 | 3.1:+92938149 | None:intergenic |
| ATATCATTGTTATTAACTCT+TGG | 0.371502 | 3.1:-92938504 | MS.gene68126:CDS |
| GTTTGATCGATCCCAATTAC+TGG | 0.372683 | 3.1:-92938698 | MS.gene68126:CDS |
| AGTTAATAACAATGATATAT+TGG | 0.374538 | 3.1:+92938509 | None:intergenic |
| AGAAGAAGACGGTGAGCATT+TGG | 0.380289 | 3.1:+92938966 | None:intergenic |
| TTTGTGGGCAAGCAGATGTA+TGG | 0.392192 | 3.1:-92937889 | MS.gene68126:CDS |
| AACCAACGCCTGTCCTTGAT+TGG | 0.395983 | 3.1:-92938662 | MS.gene68126:CDS |
| ATCCATTGTTCCAACACATC+AGG | 0.397261 | 3.1:+92937746 | None:intergenic |
| TAATAATTTCTCAGGTTTGT+GGG | 0.400581 | 3.1:-92937904 | MS.gene68126:intron |
| CGAGCACGCAATGTTATGTT+GGG | 0.408081 | 3.1:+92938062 | None:intergenic |
| CAGTCTCCTCGGGAAGTAGC+TGG | 0.414848 | 3.1:+92938114 | None:intergenic |
| TGTTAACTTGTGGAGCAAAA+TGG | 0.418912 | 3.1:-92939011 | MS.gene68126:CDS |
| TTGAGGTGAGGGGTGTAAAC+AGG | 0.422172 | 3.1:+92938390 | None:intergenic |
| TCAAGATGAGCTGATACTTC+TGG | 0.423594 | 3.1:+92937851 | None:intergenic |
| ATAATAATTTCTCAGGTTTG+TGG | 0.429279 | 3.1:-92937905 | MS.gene68126:intron |
| ATTTATTGAACCAGGGGTTA+GGG | 0.434184 | 3.1:-92938830 | MS.gene68126:intron |
| CGGTGCACTTAACATTTCCC+TGG | 0.441926 | 3.1:-92937828 | MS.gene68126:CDS |
| GAAGTATCAGCTCATCTTGA+CGG | 0.443659 | 3.1:-92937848 | MS.gene68126:CDS |
| CAGGGGTTAGGGAACAATTC+CGG | 0.447536 | 3.1:-92938819 | MS.gene68126:CDS |
| CTCAAGTATGTATGCATAGC+AGG | 0.460049 | 3.1:-92938372 | MS.gene68126:CDS |
| ATGACATCATCTGAACCAAC+CGG | 0.461617 | 3.1:+92937788 | None:intergenic |
| CCACCTCCAAAAGGCGTCCC+TGG | 0.469313 | 3.1:-92938468 | MS.gene68126:CDS |
| GCGGCATTTCGGAGCCAATC+AGG | 0.471608 | 3.1:+92938723 | None:intergenic |
| ACAAAATGAAGGTATATTCA+AGG | 0.471722 | 3.1:-92938197 | MS.gene68126:intron |
| CTCTCTTCAAATACCAATCA+AGG | 0.471850 | 3.1:+92938649 | None:intergenic |
| GCGAGCACGCAATGTTATGT+TGG | 0.473012 | 3.1:+92938061 | None:intergenic |
| CGTGCTCGCTTTGTTGGCCA+AGG | 0.474939 | 3.1:-92938047 | MS.gene68126:CDS |
| AGAGTGCCACGCCAGTAATT+GGG | 0.476971 | 3.1:+92938687 | None:intergenic |
| GAGACCACTCTATCATTGAT+TGG | 0.491581 | 3.1:-92938585 | MS.gene68126:CDS |
| CATCTTCAAGCTAATTAAAG+AGG | 0.492324 | 3.1:+92937717 | None:intergenic |
| TCATTGATTGGTCACTCGGC+TGG | 0.494886 | 3.1:-92938573 | MS.gene68126:CDS |
| GATTGGCTCCGAAATGCCGC+TGG | 0.497694 | 3.1:-92938720 | MS.gene68126:CDS |
| GACGGCGGGCCGATAGTTGT+TGG | 0.503129 | 3.1:+92938930 | None:intergenic |
| GAAGTATCTGTAGGAAGTGC+AGG | 0.505483 | 3.1:+92938137 | None:intergenic |
| GGGAGTGGTAAACTCCATCC+AGG | 0.507069 | 3.1:+92937810 | None:intergenic |
| CTCAGGAGGTGCTAACTCCA+TGG | 0.507697 | 3.1:+92938605 | None:intergenic |
| TTGATAATAGCAGTCTCCTC+GGG | 0.515621 | 3.1:+92938104 | None:intergenic |
| GCACTTAACATTTCCCTGGA+TGG | 0.518025 | 3.1:-92937824 | MS.gene68126:CDS |
| TTGGTCACTCGGCTGGAGGA+TGG | 0.518671 | 3.1:-92938566 | MS.gene68126:CDS |
| CTGGTGTTATCGATCAAACC+AGG | 0.522198 | 3.1:-92938449 | MS.gene68126:CDS |
| AATATTGTTGAACATAATCA+AGG | 0.524897 | 3.1:+92938421 | None:intergenic |
| CCAATCAGGTCTTGACACCT+TGG | 0.525622 | 3.1:+92938737 | None:intergenic |
| CAAAATGAAGGTATATTCAA+GGG | 0.525750 | 3.1:-92938196 | MS.gene68126:intron |
| TCGGCCCGCCGTCATTCTCC+CGG | 0.526986 | 3.1:-92938920 | MS.gene68126:intron |
| ATCAATGATAGAGTGGTCTC+AGG | 0.527336 | 3.1:+92938588 | None:intergenic |
| CCCCTGATGTGTTGGAACAA+TGG | 0.527934 | 3.1:-92937748 | MS.gene68126:CDS |
| TTGTGGGCAAGCAGATGTAT+GGG | 0.530004 | 3.1:-92937888 | MS.gene68126:CDS |
| TCTATCATTGATTGGTCACT+CGG | 0.533151 | 3.1:-92938577 | MS.gene68126:CDS |
| TTCAAATACCAATCAAGGAC+AGG | 0.534115 | 3.1:+92938654 | None:intergenic |
| CCTCATCATCCACCTCCAAA+AGG | 0.539353 | 3.1:-92938477 | MS.gene68126:CDS |
| CTGCTTCCACCAACAACTAT+CGG | 0.539905 | 3.1:-92938939 | MS.gene68126:CDS |
| TCCATTGTTCCAACACATCA+GGG | 0.540776 | 3.1:+92937747 | None:intergenic |
| TTCCGGTGACTACCAGAAGC+TGG | 0.544893 | 3.1:-92938802 | MS.gene68126:CDS |
| TGCATACATACTTGAGGTGA+GGG | 0.545124 | 3.1:+92938379 | None:intergenic |
| GTATGGTTCCCCTGATGTGT+TGG | 0.547140 | 3.1:-92937756 | MS.gene68126:CDS |
| CAAGCAGATGTATGGGGCGA+TGG | 0.548229 | 3.1:-92937881 | MS.gene68126:CDS |
| TTTGATAATAGCAGTCTCCT+CGG | 0.548689 | 3.1:+92938103 | None:intergenic |
| CTGGTTTGATCGATAACACC+AGG | 0.550685 | 3.1:+92938450 | None:intergenic |
| CTCCAGCTTCTGGTAGTCAC+CGG | 0.551919 | 3.1:+92938800 | None:intergenic |
| CCAAGGTGTCAAGACCTGAT+TGG | 0.553014 | 3.1:-92938737 | MS.gene68126:CDS |
| GGATGGAGTTTACCACTCCC+CGG | 0.562006 | 3.1:-92937807 | MS.gene68126:CDS |
| GAGACTAACCGGGAGAATGA+CGG | 0.567802 | 3.1:+92938912 | None:intergenic |
| AGTCTCCTCGGGAAGTAGCT+GGG | 0.569738 | 3.1:+92938115 | None:intergenic |
| AACATAATCAAGGAGACCCC+TGG | 0.569925 | 3.1:+92938431 | None:intergenic |
| ATCGATCCCAATTACTGGCG+TGG | 0.571483 | 3.1:-92938693 | MS.gene68126:CDS |
| GGCGGGCCGATAGTTGTTGG+TGG | 0.571827 | 3.1:+92938933 | None:intergenic |
| CATCTGAACCAACCGGGGAG+TGG | 0.574033 | 3.1:+92937795 | None:intergenic |
| AGTTGATGATGCTGTTCAAG+AGG | 0.575707 | 3.1:-92938628 | MS.gene68126:CDS |
| CGTGTCCACAGTTGTTGCCA+AGG | 0.576292 | 3.1:-92938754 | MS.gene68126:CDS |
| GGAGTTTACCACTCCCCGGT+TGG | 0.585654 | 3.1:-92937803 | MS.gene68126:CDS |
| GAAGACGGTGAGCATTTGGA+TGG | 0.590394 | 3.1:+92938970 | None:intergenic |
| TGACATCATCTGAACCAACC+GGG | 0.591852 | 3.1:+92937789 | None:intergenic |
| TGATGCTGTTCAAGAGGCCA+TGG | 0.593740 | 3.1:-92938622 | MS.gene68126:CDS |
| TGTTGGCCAAGGATACAAGC+AGG | 0.599233 | 3.1:-92938036 | MS.gene68126:intron |
| GATGTCATTAGACCATGGTA+TGG | 0.601444 | 3.1:-92937773 | MS.gene68126:CDS |
| TACCAATCAAGGACAGGCGT+TGG | 0.602600 | 3.1:+92938660 | None:intergenic |
| CGAGCAGTGATGTTAACTTG+TGG | 0.605981 | 3.1:-92939021 | None:intergenic |
| TTGATTGGTCACTCGGCTGG+AGG | 0.606373 | 3.1:-92938570 | MS.gene68126:CDS |
| TGACACCTTGGCAACAACTG+TGG | 0.611400 | 3.1:+92938749 | None:intergenic |
| CTGCTATGCATACATACTTG+AGG | 0.615240 | 3.1:+92938373 | None:intergenic |
| ATGCATACATACTTGAGGTG+AGG | 0.617128 | 3.1:+92938378 | None:intergenic |
| AAAATGAAGGTATATTCAAG+GGG | 0.625084 | 3.1:-92938195 | MS.gene68126:intron |
| AGCACGCAATGTTATGTTGG+GGG | 0.626405 | 3.1:+92938064 | None:intergenic |
| GAGCACGCAATGTTATGTTG+GGG | 0.634026 | 3.1:+92938063 | None:intergenic |
| TACTTCCCAGCTACTTCCCG+AGG | 0.636324 | 3.1:-92938120 | MS.gene68126:CDS |
| AGTAGCTGGGAAGTATCTGT+AGG | 0.636586 | 3.1:+92938128 | None:intergenic |
| GCAACTCTGAACAATAACTA+CGG | 0.639683 | 3.1:-92938777 | MS.gene68126:CDS |
| GTGACCAATCAATGATAGAG+TGG | 0.646895 | 3.1:+92938581 | None:intergenic |
| AATGATAGAGTGGTCTCAGG+AGG | 0.654021 | 3.1:+92938591 | None:intergenic |
| GAAGCAGATGAAGAAGAAGA+CGG | 0.657300 | 3.1:+92938955 | None:intergenic |
| TGTGGGCAAGCAGATGTATG+GGG | 0.663496 | 3.1:-92937887 | MS.gene68126:CDS |
| AGTATGTATGCATAGCAGGA+AGG | 0.664109 | 3.1:-92938368 | MS.gene68126:intron |
| TGGTGTTATCGATCAAACCA+GGG | 0.665729 | 3.1:-92938448 | MS.gene68126:CDS |
| CAGATGATGTCATTAGACCA+TGG | 0.669037 | 3.1:-92937778 | MS.gene68126:CDS |
| GACATCATCTGAACCAACCG+GGG | 0.670989 | 3.1:+92937790 | None:intergenic |
| CTAACCGGGAGAATGACGGC+GGG | 0.672855 | 3.1:+92938916 | None:intergenic |
| GGAGTGGTAAACTCCATCCA+GGG | 0.679305 | 3.1:+92937811 | None:intergenic |
| TCTGTATATGCAGCAATTTG+GGG | 0.680712 | 3.1:-92938535 | MS.gene68126:CDS |
| GCATTTGGATGGAATTGGAG+AGG | 0.682203 | 3.1:+92938981 | None:intergenic |
| CCATTGTTCCAACACATCAG+GGG | 0.693490 | 3.1:+92937748 | None:intergenic |
| GCATACATACTTGAGGTGAG+GGG | 0.697105 | 3.1:+92938380 | None:intergenic |
| ACTAACCGGGAGAATGACGG+CGG | 0.699406 | 3.1:+92938915 | None:intergenic |
| GGTGTTATCGATCAAACCAG+GGG | 0.713378 | 3.1:-92938447 | MS.gene68126:CDS |
| CGGTGACTACCAGAAGCTGG+AGG | 0.713933 | 3.1:-92938799 | MS.gene68126:CDS |
| ACATCAGGGGAACCATACCA+TGG | 0.720174 | 3.1:+92937761 | None:intergenic |
| ATTGGGATCGATCAAACCAG+CGG | 0.724154 | 3.1:+92938704 | None:intergenic |
| TGGTTTGATCGATAACACCA+GGG | 0.758878 | 3.1:+92938451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATTATTATTAGAACTT+TGG | + | chr3.1:92938826-92938845 | None:intergenic | 15.0% |
| !! | AGTTAATAACAATGATATAT+TGG | + | chr3.1:92938233-92938252 | None:intergenic | 15.0% |
| !! | AATATTGTTGAACATAATCA+AGG | + | chr3.1:92938321-92938340 | None:intergenic | 20.0% |
| !! | ATTGTATAGTAAGTTATGTT+TGG | + | chr3.1:92938498-92938517 | None:intergenic | 20.0% |
| !! | TTAATTTATAGCCAAAACTA+TGG | - | chr3.1:92938751-92938770 | MS.gene68126:CDS | 20.0% |
| !! | TTGTATAGTAAGTTATGTTT+GGG | + | chr3.1:92938497-92938516 | None:intergenic | 20.0% |
| !!! | AGTTCTAATAATAATTTCTC+AGG | - | chr3.1:92938827-92938846 | MS.gene68126:intron | 20.0% |
| !!! | ATATCATTGTTATTAACTCT+TGG | - | chr3.1:92938235-92938254 | MS.gene68126:intron | 20.0% |
| !!! | TAGTTTTGGCTATAAATTAA+CGG | + | chr3.1:92938751-92938770 | None:intergenic | 20.0% |
| ! | ATAATAATTTCTCAGGTTTG+TGG | - | chr3.1:92938834-92938853 | MS.gene68126:intron | 25.0% |
| ! | CATTTCTTACTACAAAATGA+AGG | - | chr3.1:92938531-92938550 | MS.gene68126:CDS | 25.0% |
| ! | TAATAATTTCTCAGGTTTGT+GGG | - | chr3.1:92938835-92938854 | MS.gene68126:intron | 25.0% |
| !! | AAAATGAAGGTATATTCAAG+GGG | - | chr3.1:92938544-92938563 | MS.gene68126:CDS | 25.0% |
| !! | ACAAAATGAAGGTATATTCA+AGG | - | chr3.1:92938542-92938561 | MS.gene68126:CDS | 25.0% |
| !! | CAAAATGAAGGTATATTCAA+GGG | - | chr3.1:92938543-92938562 | MS.gene68126:CDS | 25.0% |
| !! | GTTCTTTATTTATTGAACCA+GGG | - | chr3.1:92937902-92937921 | MS.gene68126:intron | 25.0% |
| !! | TTCTTTATTTATTGAACCAG+GGG | - | chr3.1:92937903-92937922 | MS.gene68126:intron | 25.0% |
| !!! | ATCAAAAAAGACTACTTTTG+AGG | + | chr3.1:92938432-92938451 | None:intergenic | 25.0% |
| !!! | TCAAAAAAGACTACTTTTGA+GGG | + | chr3.1:92938431-92938450 | None:intergenic | 25.0% |
| AAAGAGAAATAGAGACTAAC+CGG | + | chr3.1:92937841-92937860 | None:intergenic | 30.0% | |
| ATAGTAAGTTATGTTTGGGT+TGG | + | chr3.1:92938493-92938512 | None:intergenic | 30.0% | |
| TTATTTGCTTGTGATAGATG+CGG | - | chr3.1:92938788-92938807 | MS.gene68126:CDS | 30.0% | |
| ! | GGTTCTTTATTTATTGAACC+AGG | - | chr3.1:92937901-92937920 | MS.gene68126:intron | 30.0% |
| ! | TGGATTTGAGTTTCCAAAAA+GGG | + | chr3.1:92938573-92938592 | None:intergenic | 30.0% |
| ! | TTGGATTTGAGTTTCCAAAA+AGG | + | chr3.1:92938574-92938593 | None:intergenic | 30.0% |
| AAGAGAAATAGAGACTAACC+GGG | + | chr3.1:92937840-92937859 | None:intergenic | 35.0% | |
| ATTTATTGAACCAGGGGTTA+GGG | - | chr3.1:92937909-92937928 | MS.gene68126:intron | 35.0% | |
| CTCTCTTCAAATACCAATCA+AGG | + | chr3.1:92938093-92938112 | None:intergenic | 35.0% | |
| GCAACTCTGAACAATAACTA+CGG | - | chr3.1:92937962-92937981 | MS.gene68126:intron | 35.0% | |
| GTCTGTATATGCAGCAATTT+GGG | - | chr3.1:92938203-92938222 | MS.gene68126:intron | 35.0% | |
| TATTTATTGAACCAGGGGTT+AGG | - | chr3.1:92937908-92937927 | MS.gene68126:intron | 35.0% | |
| TCTGTATATGCAGCAATTTG+GGG | - | chr3.1:92938204-92938223 | MS.gene68126:intron | 35.0% | |
| TTCAAATACCAATCAAGGAC+AGG | + | chr3.1:92938088-92938107 | None:intergenic | 35.0% | |
| ! | GGATTTGAGTTTCCAAAAAG+GGG | + | chr3.1:92938572-92938591 | None:intergenic | 35.0% |
| ! | TCTATCATTGATTGGTCACT+CGG | - | chr3.1:92938162-92938181 | MS.gene68126:CDS | 35.0% |
| ! | TTTGATAATAGCAGTCTCCT+CGG | + | chr3.1:92938639-92938658 | None:intergenic | 35.0% |
| !! | TGTTAACTTGTGGAGCAAAA+TGG | - | chr3.1:92937728-92937747 | MS.gene68126:CDS | 35.0% |
| AACACACACACACTCTTTCA+AGG | - | chr3.1:92938395-92938414 | MS.gene68126:CDS | 40.0% | |
| AACCAAATGAATGCGATGTG+AGG | + | chr3.1:92937885-92937904 | None:intergenic | 40.0% | |
| AGTATGTATGCATAGCAGGA+AGG | - | chr3.1:92938371-92938390 | MS.gene68126:CDS | 40.0% | |
| ATCAATGATAGAGTGGTCTC+AGG | + | chr3.1:92938154-92938173 | None:intergenic | 40.0% | |
| ATCCATTGTTCCAACACATC+AGG | + | chr3.1:92938996-92939015 | None:intergenic | 40.0% | |
| ATGACATCATCTGAACCAAC+CGG | + | chr3.1:92938954-92938973 | None:intergenic | 40.0% | |
| ATGCATACATACTTGAGGTG+AGG | + | chr3.1:92938364-92938383 | None:intergenic | 40.0% | |
| CAGATGATGTCATTAGACCA+TGG | - | chr3.1:92938961-92938980 | MS.gene68126:CDS | 40.0% | |
| CGTCTGTATATGCAGCAATT+TGG | - | chr3.1:92938202-92938221 | MS.gene68126:intron | 40.0% | |
| CTCAAGTATGTATGCATAGC+AGG | - | chr3.1:92938367-92938386 | MS.gene68126:intron | 40.0% | |
| CTGCTATGCATACATACTTG+AGG | + | chr3.1:92938369-92938388 | None:intergenic | 40.0% | |
| GAAGCAGATGAAGAAGAAGA+CGG | + | chr3.1:92937787-92937806 | None:intergenic | 40.0% | |
| GAGACCACTCTATCATTGAT+TGG | - | chr3.1:92938154-92938173 | MS.gene68126:CDS | 40.0% | |
| GATGTCATTAGACCATGGTA+TGG | - | chr3.1:92938966-92938985 | MS.gene68126:CDS | 40.0% | |
| GTGACCAATCAATGATAGAG+TGG | + | chr3.1:92938161-92938180 | None:intergenic | 40.0% | |
| GTTTGATCGATCCCAATTAC+TGG | - | chr3.1:92938041-92938060 | MS.gene68126:CDS | 40.0% | |
| TCAAGATGAGCTGATACTTC+TGG | + | chr3.1:92938891-92938910 | None:intergenic | 40.0% | |
| TCCATTGTTCCAACACATCA+GGG | + | chr3.1:92938995-92939014 | None:intergenic | 40.0% | |
| TGCATACATACTTGAGGTGA+GGG | + | chr3.1:92938363-92938382 | None:intergenic | 40.0% | |
| TGGTTTGATCGATAACACCA+GGG | + | chr3.1:92938291-92938310 | None:intergenic | 40.0% | |
| ! | CAGTTTGCACACCATAGTTT+TGG | + | chr3.1:92938765-92938784 | None:intergenic | 40.0% |
| ! | GAAGTATCAGCTCATCTTGA+CGG | - | chr3.1:92938891-92938910 | MS.gene68126:intron | 40.0% |
| ! | TTGATAATAGCAGTCTCCTC+GGG | + | chr3.1:92938638-92938657 | None:intergenic | 40.0% |
| !! | AAGTTATGTTTGGGTTGGCA+TGG | + | chr3.1:92938488-92938507 | None:intergenic | 40.0% |
| !! | AGTTGATGATGCTGTTCAAG+AGG | - | chr3.1:92938111-92938130 | MS.gene68126:CDS | 40.0% |
| !! | TGGTGTTATCGATCAAACCA+GGG | - | chr3.1:92938291-92938310 | MS.gene68126:intron | 40.0% |
| AACATAATCAAGGAGACCCC+TGG | + | chr3.1:92938311-92938330 | None:intergenic | 45.0% | |
| AATGATAGAGTGGTCTCAGG+AGG | + | chr3.1:92938151-92938170 | None:intergenic | 45.0% | |
| AGAAGAAGACGGTGAGCATT+TGG | + | chr3.1:92937776-92937795 | None:intergenic | 45.0% | |
| AGCACGCAATGTTATGTTGG+GGG | + | chr3.1:92938678-92938697 | None:intergenic | 45.0% | |
| ATTGGGATCGATCAAACCAG+CGG | + | chr3.1:92938038-92938057 | None:intergenic | 45.0% | |
| CATTCACCTGCTTGTATCCT+TGG | + | chr3.1:92938712-92938731 | None:intergenic | 45.0% | |
| CCATTGTTCCAACACATCAG+GGG | + | chr3.1:92938994-92939013 | None:intergenic | 45.0% | |
| CGAGCACGCAATGTTATGTT+GGG | + | chr3.1:92938680-92938699 | None:intergenic | 45.0% | |
| CTCCTCACATCGCATTCATT+TGG | - | chr3.1:92937880-92937899 | MS.gene68126:CDS | 45.0% | |
| CTGCTTCCACCAACAACTAT+CGG | - | chr3.1:92937800-92937819 | MS.gene68126:CDS | 45.0% | |
| GAGCACGCAATGTTATGTTG+GGG | + | chr3.1:92938679-92938698 | None:intergenic | 45.0% | |
| GCACTTAACATTTCCCTGGA+TGG | - | chr3.1:92938915-92938934 | MS.gene68126:intron | 45.0% | |
| GCATACATACTTGAGGTGAG+GGG | + | chr3.1:92938362-92938381 | None:intergenic | 45.0% | |
| GCATTTGGATGGAATTGGAG+AGG | + | chr3.1:92937761-92937780 | None:intergenic | 45.0% | |
| GGTGAGCATTTGGATGGAAT+TGG | + | chr3.1:92937766-92937785 | None:intergenic | 45.0% | |
| TGACATCATCTGAACCAACC+GGG | + | chr3.1:92938953-92938972 | None:intergenic | 45.0% | |
| TGTTATGTTGGGGGAAGAAG+TGG | + | chr3.1:92938669-92938688 | None:intergenic | 45.0% | |
| TTGTGGGCAAGCAGATGTAT+GGG | - | chr3.1:92938851-92938870 | MS.gene68126:intron | 45.0% | |
| TTTGTGGGCAAGCAGATGTA+TGG | - | chr3.1:92938850-92938869 | MS.gene68126:intron | 45.0% | |
| ! | CTGGTTTGATCGATAACACC+AGG | + | chr3.1:92938292-92938311 | None:intergenic | 45.0% |
| ! | GAAGTATCTGTAGGAAGTGC+AGG | + | chr3.1:92938605-92938624 | None:intergenic | 45.0% |
| ! | GGTGTTATCGATCAAACCAG+GGG | - | chr3.1:92938292-92938311 | MS.gene68126:intron | 45.0% |
| !! | AGTAGCTGGGAAGTATCTGT+AGG | + | chr3.1:92938614-92938633 | None:intergenic | 45.0% |
| !! | CTGGTGTTATCGATCAAACC+AGG | - | chr3.1:92938290-92938309 | MS.gene68126:intron | 45.0% |
| !! | CTTTTGGAGGTGGATGATGA+GGG | + | chr3.1:92938264-92938283 | None:intergenic | 45.0% |
| !! | TTTTGGAGGTGGATGATGAG+GGG | + | chr3.1:92938263-92938282 | None:intergenic | 45.0% |
| AACCAACGCCTGTCCTTGAT+TGG | - | chr3.1:92938077-92938096 | MS.gene68126:CDS | 50.0% | |
| ACATCAGGGGAACCATACCA+TGG | + | chr3.1:92938981-92939000 | None:intergenic | 50.0% | |
| ACATTGCGTGCTCGCTTTGT+TGG | - | chr3.1:92938686-92938705 | MS.gene68126:CDS | 50.0% | |
| ATCGATCCCAATTACTGGCG+TGG | - | chr3.1:92938046-92938065 | MS.gene68126:CDS | 50.0% | |
| CAGGGGTTAGGGAACAATTC+CGG | - | chr3.1:92937920-92937939 | MS.gene68126:intron | 50.0% | |
| CCAATCAGGTCTTGACACCT+TGG | + | chr3.1:92938005-92938024 | None:intergenic | 50.0% | |
| CCCCTGATGTGTTGGAACAA+TGG | - | chr3.1:92938991-92939010 | MS.gene68126:CDS | 50.0% | |
| CCTCATCATCCACCTCCAAA+AGG | - | chr3.1:92938262-92938281 | MS.gene68126:intron | 50.0% | |
| CGATCAAACCAGCGGCATTT+CGG | + | chr3.1:92938030-92938049 | None:intergenic | 50.0% | |
| CGGTGCACTTAACATTTCCC+TGG | - | chr3.1:92938911-92938930 | MS.gene68126:intron | 50.0% | |
| GAAGACGGTGAGCATTTGGA+TGG | + | chr3.1:92937772-92937791 | None:intergenic | 50.0% | |
| GACATCATCTGAACCAACCG+GGG | + | chr3.1:92938952-92938971 | None:intergenic | 50.0% | |
| GAGACTAACCGGGAGAATGA+CGG | + | chr3.1:92937830-92937849 | None:intergenic | 50.0% | |
| GCGAGCACGCAATGTTATGT+TGG | + | chr3.1:92938681-92938700 | None:intergenic | 50.0% | |
| GGAGTGGTAAACTCCATCCA+GGG | + | chr3.1:92938931-92938950 | None:intergenic | 50.0% | |
| GTATGGTTCCCCTGATGTGT+TGG | - | chr3.1:92938983-92939002 | MS.gene68126:CDS | 50.0% | |
| TACCAATCAAGGACAGGCGT+TGG | + | chr3.1:92938082-92938101 | None:intergenic | 50.0% | |
| TGACACCTTGGCAACAACTG+TGG | + | chr3.1:92937993-92938012 | None:intergenic | 50.0% | |
| TGATGCTGTTCAAGAGGCCA+TGG | - | chr3.1:92938117-92938136 | MS.gene68126:CDS | 50.0% | |
| TGTGGGCAAGCAGATGTATG+GGG | - | chr3.1:92938852-92938871 | MS.gene68126:intron | 50.0% | |
| TGTTGGCCAAGGATACAAGC+AGG | - | chr3.1:92938703-92938722 | MS.gene68126:CDS | 50.0% | |
| ! | AGAGTGCCACGCCAGTAATT+GGG | + | chr3.1:92938055-92938074 | None:intergenic | 50.0% |
| ! | ATAACACCAGGGACGCCTTT+TGG | + | chr3.1:92938280-92938299 | None:intergenic | 50.0% |
| ! | ATTCAAGGGGCTCCCCTTTT+TGG | - | chr3.1:92938557-92938576 | MS.gene68126:CDS | 50.0% |
| ! | CCAAGGTGTCAAGACCTGAT+TGG | - | chr3.1:92938002-92938021 | MS.gene68126:intron | 50.0% |
| ! | TCATTGATTGGTCACTCGGC+TGG | - | chr3.1:92938166-92938185 | MS.gene68126:CDS | 50.0% |
| ! | TTGAGGTGAGGGGTGTAAAC+AGG | + | chr3.1:92938352-92938371 | None:intergenic | 50.0% |
| !! | AAGAGTGCCACGCCAGTAAT+TGG | + | chr3.1:92938056-92938075 | None:intergenic | 50.0% |
| !! | CCTTTTGGAGGTGGATGATG+AGG | + | chr3.1:92938265-92938284 | None:intergenic | 50.0% |
| ACTAACCGGGAGAATGACGG+CGG | + | chr3.1:92937827-92937846 | None:intergenic | 55.0% | |
| AGTCTCCTCGGGAAGTAGCT+GGG | + | chr3.1:92938627-92938646 | None:intergenic | 55.0% | |
| CAAGCAGATGTATGGGGCGA+TGG | - | chr3.1:92938858-92938877 | MS.gene68126:intron | 55.0% | |
| CGGAATTGTTCCCTAACCCC+TGG | + | chr3.1:92937922-92937941 | None:intergenic | 55.0% | |
| CGTGTCCACAGTTGTTGCCA+AGG | - | chr3.1:92937985-92938004 | MS.gene68126:intron | 55.0% | |
| CTCCAGCTTCTGGTAGTCAC+CGG | + | chr3.1:92937942-92937961 | None:intergenic | 55.0% | |
| GGATGGAGTTTACCACTCCC+CGG | - | chr3.1:92938932-92938951 | MS.gene68126:CDS | 55.0% | |
| GGGAGTGGTAAACTCCATCC+AGG | + | chr3.1:92938932-92938951 | None:intergenic | 55.0% | |
| TACTTCCCAGCTACTTCCCG+AGG | - | chr3.1:92938619-92938638 | MS.gene68126:CDS | 55.0% | |
| TCAGAGTTGCCTCCAGCTTC+TGG | + | chr3.1:92937952-92937971 | None:intergenic | 55.0% | |
| TTCCGGTGACTACCAGAAGC+TGG | - | chr3.1:92937937-92937956 | MS.gene68126:intron | 55.0% | |
| ! | GGAAGTGCAGGCTCAGCATT+TGG | + | chr3.1:92938593-92938612 | None:intergenic | 55.0% |
| ! | TTGATTGGTCACTCGGCTGG+AGG | - | chr3.1:92938169-92938188 | MS.gene68126:CDS | 55.0% |
| !! | CTCAGGAGGTGCTAACTCCA+TGG | + | chr3.1:92938137-92938156 | None:intergenic | 55.0% |
| CAGTCTCCTCGGGAAGTAGC+TGG | + | chr3.1:92938628-92938647 | None:intergenic | 60.0% | |
| CATCTGAACCAACCGGGGAG+TGG | + | chr3.1:92938947-92938966 | None:intergenic | 60.0% | |
| CGGTGACTACCAGAAGCTGG+AGG | - | chr3.1:92937940-92937959 | MS.gene68126:intron | 60.0% | |
| CTAACCGGGAGAATGACGGC+GGG | + | chr3.1:92937826-92937845 | None:intergenic | 60.0% | |
| GCGGCATTTCGGAGCCAATC+AGG | + | chr3.1:92938019-92938038 | None:intergenic | 60.0% | |
| GGAGTTTACCACTCCCCGGT+TGG | - | chr3.1:92938936-92938955 | MS.gene68126:CDS | 60.0% | |
| TTGGTCACTCGGCTGGAGGA+TGG | - | chr3.1:92938173-92938192 | MS.gene68126:CDS | 60.0% | |
| ! | ACACCAGGGACGCCTTTTGG+AGG | + | chr3.1:92938277-92938296 | None:intergenic | 60.0% |
| ! | CGTGCTCGCTTTGTTGGCCA+AGG | - | chr3.1:92938692-92938711 | MS.gene68126:CDS | 60.0% |
| ! | GATTGGCTCCGAAATGCCGC+TGG | - | chr3.1:92938019-92938038 | MS.gene68126:intron | 60.0% |
| GACGGCGGGCCGATAGTTGT+TGG | + | chr3.1:92937812-92937831 | None:intergenic | 65.0% | |
| GGCGGGCCGATAGTTGTTGG+TGG | + | chr3.1:92937809-92937828 | None:intergenic | 65.0% | |
| !! | CCACCTCCAAAAGGCGTCCC+TGG | - | chr3.1:92938271-92938290 | MS.gene68126:intron | 65.0% |
| !! | CCAGGGACGCCTTTTGGAGG+TGG | + | chr3.1:92938274-92938293 | None:intergenic | 65.0% |
| TCGGCCCGCCGTCATTCTCC+CGG | - | chr3.1:92937819-92937838 | MS.gene68126:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 92937727 | 92939034 | 92937727 | ID=MS.gene68126 |
| chr3.1 | mRNA | 92937727 | 92939034 | 92937727 | ID=MS.gene68126.t1;Parent=MS.gene68126 |
| chr3.1 | exon | 92938921 | 92939034 | 92938921 | ID=MS.gene68126.t1.exon1;Parent=MS.gene68126.t1 |
| chr3.1 | CDS | 92938921 | 92939034 | 92938921 | ID=cds.MS.gene68126.t1;Parent=MS.gene68126.t1 |
| chr3.1 | exon | 92938369 | 92938838 | 92938369 | ID=MS.gene68126.t1.exon2;Parent=MS.gene68126.t1 |
| chr3.1 | CDS | 92938369 | 92938838 | 92938369 | ID=cds.MS.gene68126.t1;Parent=MS.gene68126.t1 |
| chr3.1 | exon | 92938037 | 92938208 | 92938037 | ID=MS.gene68126.t1.exon3;Parent=MS.gene68126.t1 |
| chr3.1 | CDS | 92938037 | 92938208 | 92938037 | ID=cds.MS.gene68126.t1;Parent=MS.gene68126.t1 |
| chr3.1 | exon | 92937727 | 92937912 | 92937727 | ID=MS.gene68126.t1.exon4;Parent=MS.gene68126.t1 |
| chr3.1 | CDS | 92937727 | 92937912 | 92937727 | ID=cds.MS.gene68126.t1;Parent=MS.gene68126.t1 |
| Gene Sequence |
| Protein sequence |
