AlfalfaGEDB | MS.gene72011

M. sativa cultivar XinJiangDaYe / MS.gene72011

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004713 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00059.24 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72011.t1	RHN73696.1	97.3	551	15	0	1	551	1	551	4.40E-304	1053.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72011.t1	Q9C823	64.5	543	174	8	12	548	19	548	1.9e-183	643.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72011.t1	A0A396J693	97.3	551	15	0	1	551	1	551	3.2e-304	1053.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene72011	0.823488	1.35E-53	-1.69E-46
MS.gene049159	MS.gene72011	0.840824	6.89E-58	-1.69E-46
MS.gene049254	MS.gene72011	0.804178	2.45E-49	-1.69E-46
MS.gene049404	MS.gene72011	0.819049	1.42E-52	-1.69E-46
MS.gene049435	MS.gene72011	0.830724	2.50E-55	-1.69E-46
MS.gene049501	MS.gene72011	0.802917	4.47E-49	-1.69E-46
MS.gene049821	MS.gene72011	0.803999	2.67E-49	-1.69E-46
MS.gene049850	MS.gene72011	0.825237	5.23E-54	-1.69E-46
MS.gene050020	MS.gene72011	0.835367	1.75E-56	-1.69E-46
MS.gene050273	MS.gene72011	0.811894	5.57E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72011.t1	MTR_2g043380	98.004	551	11	0	1	551	1	551	0.0	1132
MS.gene72011.t1	MTR_2g103950	39.394	297	173	3	247	543	23	312	1.09e-64	215
MS.gene72011.t1	MTR_4g069970	36.774	310	187	4	239	548	117	417	1.19e-62	212
MS.gene72011.t1	MTR_4g129010	38.176	296	176	3	248	543	26	314	1.28e-62	210
MS.gene72011.t1	MTR_4g069970	36.774	310	187	4	239	548	117	417	4.69e-62	211
MS.gene72011.t1	MTR_7g058810	39.322	295	171	5	250	542	79	367	2.29e-61	209
MS.gene72011.t1	MTR_8g028695	36.301	292	179	3	252	543	132	416	7.21e-60	206
MS.gene72011.t1	MTR_8g461260	39.249	293	171	4	250	542	32	317	1.19e-59	203
MS.gene72011.t1	MTR_5g034210	35.548	301	181	5	251	547	46	337	2.45e-59	202
MS.gene72011.t1	MTR_2g075250	35.693	339	205	4	208	546	616	941	2.81e-59	213

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72011.t1	AT1G52310	67.442	516	148	8	42	548	44	548	0.0	697
MS.gene72011.t1	AT1G52310	70.000	480	124	9	78	548	3	471	0.0	666
MS.gene72011.t1	AT3G15890	38.339	313	178	3	230	542	14	311	5.42e-64	213
MS.gene72011.t1	AT1G52540	38.658	313	180	4	230	542	10	310	2.66e-63	211
MS.gene72011.t1	AT1G52540	39.262	298	173	3	245	542	18	307	6.30e-63	210
MS.gene72011.t1	AT4G01330	36.986	292	177	3	252	543	150	434	8.81e-63	213
MS.gene72011.t1	AT4G01330	36.986	292	177	3	252	543	150	434	3.51e-62	212
MS.gene72011.t1	AT4G01330	36.986	292	177	3	252	543	150	434	3.99e-62	212
MS.gene72011.t1	AT1G16670	37.179	312	187	4	233	542	10	314	1.74e-61	207
MS.gene72011.t1	AT1G61860	36.877	301	182	4	250	548	71	365	2.47e-61	207

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Find 146 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTAGCCAAAGGGAATA+TGG	0.372680	2.3:-46604898	None:intergenic
AAGACAGAATTGTCCGGTTC+CGG	0.400139	2.3:-46604934	None:intergenic
AAGACTCAACAACACTATGT+CGG	0.583057	2.3:+46604833	MS.gene72011:CDS
AAGACTGGTGGTACGTACAG+TGG	0.625096	2.3:+46605462	MS.gene72011:CDS
AAGAGTGACGTTTATAGTTT+TGG	0.282002	2.3:+46606640	MS.gene72011:CDS
AAGCAGTTGATTCTGTGGGT+TGG	0.558849	2.3:+46606704	MS.gene72011:CDS
AAGGAGTTCTATTCTGAAAT+TGG	0.237633	2.3:+46605549	MS.gene72011:CDS
AAGGCTTCGACATCCAAACC+TGG	0.613833	2.3:+46605581	MS.gene72011:CDS
AATGGCTACATCACATACCA+AGG	0.615578	2.3:+46605682	MS.gene72011:CDS
AATGTTCCACTTAATTGTAC+CGG	0.527889	2.3:+46604915	MS.gene72011:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTGTATAGTTGTTAGC+TGG	+	chr2.3:46602595-46602614	MS.gene72011:intron	30.0%
AAATCAGAAAGTCTTAGCAT+TGG	-	chr2.3:46605909-46605928	None:intergenic	30.0%
AATAGTTACTATCAGCATTG+AGG	+	chr2.3:46602068-46602087	MS.gene72011:intron	30.0%
AATGAATTCCTACCTACAAA+AGG	-	chr2.3:46603937-46603956	None:intergenic	30.0%
AATGTAAAATGAGAATCCGT+GGG	-	chr2.3:46605086-46605105	None:intergenic	30.0%
AATGTTCCACTTAATTGTAC+CGG	+	chr2.3:46604915-46604934	MS.gene72011:CDS	30.0%
AGTAACTACTAACTTCATGT+GGG	-	chr2.3:46602660-46602679	None:intergenic	30.0%
ATGTCTTCAATCCAAAATGT+CGG	+	chr2.3:46601798-46601817	MS.gene72011:intron	30.0%
ATTAGGTTCCACAATAATTC+TGG	+	chr2.3:46603755-46603774	MS.gene72011:intron	30.0%
CAAACTCATAAACAATGTAG+CGG	-	chr2.3:46605641-46605660	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	46601375	46606954	46601375	ID=MS.gene72011
chr2.3	mRNA	46601375	46606954	46601375	ID=MS.gene72011.t1;Parent=MS.gene72011
chr2.3	exon	46601375	46601455	46601375	ID=MS.gene72011.t1.exon1;Parent=MS.gene72011.t1
chr2.3	CDS	46601375	46601455	46601375	ID=cds.MS.gene72011.t1;Parent=MS.gene72011.t1
chr2.3	exon	46601548	46601602	46601548	ID=MS.gene72011.t1.exon2;Parent=MS.gene72011.t1
chr2.3	CDS	46601548	46601602	46601548	ID=cds.MS.gene72011.t1;Parent=MS.gene72011.t1
chr2.3	exon	46604631	46605062	46604631	ID=MS.gene72011.t1.exon3;Parent=MS.gene72011.t1
chr2.3	CDS	46604631	46605062	46604631	ID=cds.MS.gene72011.t1;Parent=MS.gene72011.t1
chr2.3	exon	46605208	46605769	46605208	ID=MS.gene72011.t1.exon4;Parent=MS.gene72011.t1
chr2.3	CDS	46605208	46605769	46605208	ID=cds.MS.gene72011.t1;Parent=MS.gene72011.t1
chr2.3	exon	46606429	46606954	46606429	ID=MS.gene72011.t1.exon5;Parent=MS.gene72011.t1
chr2.3	CDS	46606429	46606954	46606429	ID=cds.MS.gene72011.t1;Parent=MS.gene72011.t1

Gene Sequence

>MS.gene72011

ATGGAAATCAAACCCACGCTTCTGCAATTCTTTCTCCTTCTCTTATCTTTGTTCGCTGTTCCTGGAATCACTTCCAATGCGGTGAGTCACTTTTCTTCAAGCTTTTTCTTAGGACATGTTTGTTAGGAAATTTAATTAAATAAGTTGTTTTTATTTTTTGTTTTTGGTTGTAGACACTTAATGAGACTTGTGGTTACTTTGATGGTTCACTCAATAGAGATACTAAAGGTATGTATTATTTCTTACTCATAACTTCAAATCTGGTCAATTTATCTGTTTCCAGTGAATCTGGACAAGTCTAACCTATGAAGCACAAACACGGACACCGACGCTGACACGTGGACACTAGTAATAATTTGAGAAAATAGAAGTGATTGTGTGTAATTACAAGTGTCAGTGTCACTGTGTGTTGGACACTTACACATGTCTTCAATCCAAAATGTCGGTGCTAGAGTTTAACTACAATTGATTCGAATAATCCTTTATCTCTATTAATATTATTTCGGCAAACAGTCGTTTTTGTCTTTGAATGTATAACGAGTAGTCACGATAGTCATTCAATGTATCGAAATTCCAAAATAGTTATGATTGTGCACTCTGTTAGTCAAAATAGTCTTTGATGTTAAAATGTTCTGTTAATACTTTCATATCAGTCCCTCAATCTACTTACTTTCATATCAGTCCTTATAAGAAAATAGTTACTATCAGCATTGAGGGATTATGGGATTATTTTAGCATCGGAGACTATTTTGACCAACAGAGTGCACAATCAGCACTATTTTGGAATTTTGATATATTGAGGAACTATTGTGGCTATTCGTTACACATTCAGGGTTGAATGACTATTTGCCCATATTTTTTCTTATTCTACACCAAGAGGTGAGGGATGGACTTGGGTGGAATAAATATAGTGCTTTAATGATTTTCTAACGTGACAGACATTTTGAAAGAATGTTTTAATTGCAATTGTGGGTGCTGGTTATGTTGTAATCCTTGAAATTGAAGATAAATACAGCTGATGCTGCAATTAGGGAATATTTCTAATAGATGTTATTTGGCGGTATTATTTTGAGTGTTTTAATAAAATGTAACTAAAAGCTTTCTTAGTCTATATGCAATTACCTTAAATAATAGTTGATTGATCTTTTGATATGGAGGGATAGTATTCATAGAAATGTGATGGAAGACGAAAACGAATCTATATCAGATTAGACTGGAGGAAACTTGTATAGTTGTTAGCTGGTATAAAAGCAACTATATACTCGGCCACATACAATCTTGTCCCACATGAAGTTAGTAGTTACTAACTGAATAAGTAACAAGATTTATAAGTAATTTGTTATTGACTACCCTATGTAATCAATAGCGGATGTAGCGGCAATGGCATAGCAGACTCTAGGCACTACGCAAAACACCATTGCATTGTGGTTTTGAGTAGCGGCTTTAGCACCTCCAGTAACAGCCAGATAGCGGTAACAGTGGCCTATACAGTGAAACTCTTGTAAAAATCTGAACATGTTTTTAACTTAAATCTGTTTCCTCCTTTTTCTCGACTTTTGGTCATTTCACACACCCTGAACTTTTGAATGACAACGAAATAAGGCTCACCTGTCTTCTCATTTCTTCTCCTCCGAAATGGCTTCATTTCACTTCCTAAACCCTGAACGGCTTTGTATCCCCTCCTGGATATCCTCCTCTTGTAACAACCACTAGGCAGCAAAAAAGAATGAGGAACCTAGCTACCACTATAGACACAAACATATAGGCAGAAGAGGAGGAGGATGCAGAACTAATGAGGAAGAGCTTGGAGAGAGTGATTCCATTTAAGGAATCATTATTATTTATTTTAAATGCTTAGATGAGTTATTTTCAGCATTGGAGGCTAAAATTTAACTGTTTTATACTACTATTATGTTTGAATATTGGCGACAATGAACTTTGATTATTAGTCATGAATATATCCTTTTTTTTTATTTTTTTATTTGAGGTATGTTCCTTCTATGGCATAAATTTCTAGTATTGTTTCTCTATACTTCAACGCAGCGACCCTTTTGCTGCCCGCTATATTGCCAAAATGTGTTGGGGGGACTGCCACTGCTTTATGCCCTGCTATTCGCCATTGACTATGTAGGGACCACCAAGTGAAATAAGAAGTCAAATAATAAACAAATTACTAGAGACTCATCTAATTATAACTGCCAGGCTCGTTCTTCCGATGAGTTTGTGTCCAGATCAGATGTATGCTCATGCTCACATCCAAATGAAGTGTCTAACAACCCCATAATACAAAATGCTTCTTATTTTTTAATATTTCTATAGTAACATCTATTGTATATTAATTATAATGCAATTTATCTGAAGGTACTTGAAGTCACATTTTATTAGGTTCCACAATAATTCTGGTCCAAAGGATAAAATACTTCAATTTTATTATTGAAAAAAGGGGAAAGTTACTTAACTGGTTGTTTTTAGAGGGTAGGATTAGGTAGTTGAAAGTTAGTGTGTTTGATTTTTCTGTTGCAATCTGATCTTATGTATTATAAATAGGATCAAACCCCTCCTTTTGTAGGTAGGAATTCATTTGTAGTGTAAGCTAGATAAGTGGAGGGGATTCAAATCTTTTGTGTATCTTTTCCTTTGTTATAAATAAAAGGATAAAACGTAGGTCCATTTCCTTACATGTTTTTCATATGGTTCTTCACATAAAATTCCCTTTTTGCAGTTATAATAAATTTTGGGCCAAATACCTCCCTGGGTCCTTTAAGTTTCACGTTTGTAACAGATAGGTCCTTTAAGTTTTTTAGGTAACAGATAGGTCCTTTAAGTTTCTAAGGTTTCAGATAGGTCCTTTAAGTTTCGAGTTTGTTTTAGATAGGTCCTTCATATCAACTCCGTTAAGGACCTATCTGAAACTTTAGAAACTTAAAGGACCTATCTGTTACCTAAAAAACTTAAAGGACCTATCTGTTACAAACATGAAACTTAAAGGACCCAGGGAGGTATTTGGCCTAAATTTTGAGAAAATTATGGATTTGGAAAATCATTGGTTGTTATGGGTATTTTATGTGAAGAACCACACGAAAAGTACCGAAGAAAATGCACCTAAGTTTTGTCCAAACTATACGGGCAAATAAACCTCGTTTCTCTATTCTGTTTAGATAGGAATTACAAGTTCCTATCACATTTTGATTGTCATTTATCTACATATTCATGCTTTAGTATGCATATATTATACATTTTTTCTCTTCTTGTGCAGCACCATGCCCAAATGGTTGGGTTATGGACCCTAATAAGACCAAGTGCTTTCTCCATGTTGGGAGGCCTCAATCATGGAATGACTCAGAGACATGTTGTAATAAATATGGTGGGCATTTAGCATCATTCGCATCACTTCAGGAGTTACATTTTGCTCAAAGTCTGTGTGGTGAATCCATAAATAGTTGCTGGATTGGTGGAAGAAGACTCAACAACACTATGTCGGGTTTTCAGTGGACATGGTCTGATGATTCACAATGGAATAAGTCCATATTCCCTTTGGCTAATGTTCCACTTAATTGTACCGGAACCGGACAATTCTGTCTTAGGAACATCACAGAGTATTTATGTGCAGTAATGTCTAATAATTCAAAATCTCTCTTAAGTGAGAGATGTGATAATCCTCATGCCTCTCTATGTATACTTGACTTAGGTATGCTCTTGTTTATATTACCCACGGATTCTCATTTTACATTCATTAGAAATTCAGTATGTATATTTATCAATTATTTATTTAATTCATTCTTTCAAAAGGTTTATCTTTTTTATTTTTATTTTTGGGTGTGCCATTTTTTCAGATACAAAATGTAATCATATGCACTGCCATAGGGAATACCTTATCATCCTTGCAGTGGTAAGTGGAGTGATACTCTTGACAACATTAGCAGTAGTTGTATGGCTTCTTGTATATAAGCAGGGCAAGAAGAGAAGACGATCTAGAAAACTAACTGATCCTGCTGCTACACTTCCATCATGGAAAATCTTTACAAAAGAGGAACTAAGGTCAATTACGAAAAATTTCAGTGAAGGAAACCGCCTTGTTGGAGATGCCAAGACTGGTGGTACGTACAGTGGGGTCCAAGCTGATGGCTCAAAGGTTGCAGTTAAGAGATTAAAAAGGGCAAGCTTTAAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTTGCAAGGCTTCGACATCCAAACCTGGTGGTTGTGATGGGATGCTGCTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGCTACATCACATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCAACGACGCTTGCTCAAGGAATAGCGTAAGTTCAAAATATACTTATTCTTTGATAACTTTCTACAAGCTTTGTCTAATGTGCACAAGTAAATAAGTCTTGCACCATACGCAAGTTTGTTTTTTTCCATTGGATTAATAAATCACATCATATCACATTTGATCCAATGCTAAGACTTTCTGATTTAACGGTGGAAACAAGCTTGTGCATGATGCAAGACTTGTTCCACTTGTGTACCGTAGATTTGGCCCTTTCTACATGTCCATTTAGAATTATTCTCTCATAATTATACATGTTTTCACTCTATTAATAGAAGTATTCTTATGAAATCTAGCACCGTCTTATGTAATAAATATGTTGATAGCACATCTCTTATACAAATCTAGCACTGCCTTGTATGTTTTCAAGATTTTCATGAAGAAACTTGATACCCATTTCCAGGGCACCACATATGTTTGTTGGGTTTCACTTAGTTATGGATTATAGTTTCATGACTTCATCCCTTCAAACAAAAGTATTTCTTATAACTTGTTGAAATCTTTACGAGTCTTTTTTTTTTTTTTTTTTGGTCAACCTTTACGAGTTTGATTTACTAACAAGAAAAAAGGATTATATAGCCCATAGCATTTTAAACTCGGTGGATATATTAATCACAATTTGTTTATTTTTTTCTCCCGTTTCAACAGGTTTCTGCATGACAAAGTTAAGCCACAAGTTGTTCATCGAGATATTCGAGCTAGTAATGTGCTGCTGGACGAGGAGTTTGGAGCACACCTTATGGGTGTTGGCTTGTCCAAGTTTGTGCCATATGAAGCGATGCATGAGAGGACTGTGATGGCAGGGGGAACTTATGGATATCTTGCTCCAGAGTTTGTGTACCGAAACGAGCTTACAACAAAGAGTGACGTTTATAGTTTTGGTGTCCTACTACTCGAAATAGTTAGTGGACGTAGACCAGCACAAGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCTACACCTCTTGTTCAAGCTCATCGCTACCCTGAACTCTTGGATCCTTATATATCTTCCTCATCTACTAGTATCATACCAGAGACTAGTACTATCCAGAAGGTGGTTGACCTTGTCTATTCATGCACGCAGCATGTCCCTTCTATGCGCCCTAGAATGTCACACGTTGTTCATCAGCTGCAACAGTTTACCCAGCCACCTTCAAAATAA

Protein sequence

>MS.gene72011.t1

MEIKPTLLQFFLLLLSLFAVPGITSNATLNETCGYFDGSLNRDTKAPCPNGWVMDPNKTKCFLHVGRPQSWNDSETCCNKYGGHLASFASLQELHFAQSLCGESINSCWIGGRRLNNTMSGFQWTWSDDSQWNKSIFPLANVPLNCTGTGQFCLRNITEYLCAVMSNNSKSLLSERCDNPHASLCILDLDTKCNHMHCHREYLIILAVVSGVILLTTLAVVVWLLVYKQGKKRRRSRKLTDPAATLPSWKIFTKEELRSITKNFSEGNRLVGDAKTGGTYSGVQADGSKVAVKRLKRASFKRKKEFYSEIGRVARLRHPNLVVVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEAMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPELLDPYISSSSTSIIPETSTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFTQPPSK