Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08434.t1 | XP_013446562.1 | 98.3 | 173 | 3 | 0 | 1 | 173 | 1 | 173 | 1.70E-89 | 338.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08434.t1 | Q93VI3 | 89.5 | 172 | 18 | 0 | 1 | 172 | 1 | 172 | 2.7e-83 | 309.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08434.t1 | I3SHA1 | 98.3 | 173 | 3 | 0 | 1 | 173 | 1 | 173 | 1.2e-89 | 338.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08434.t1 | MTR_8g080460 | 98.266 | 173 | 3 | 0 | 1 | 173 | 1 | 173 | 1.14e-127 | 355 |
| MS.gene08434.t1 | MTR_3g085490 | 96.532 | 173 | 6 | 0 | 1 | 173 | 1 | 173 | 1.67e-126 | 353 |
| MS.gene08434.t1 | MTR_3g085490 | 98.137 | 161 | 3 | 0 | 1 | 161 | 1 | 161 | 6.65e-119 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08434.t1 | AT1G27400 | 89.017 | 173 | 19 | 0 | 1 | 173 | 1 | 173 | 3.87e-115 | 324 |
| MS.gene08434.t1 | AT1G67430 | 88.439 | 173 | 20 | 0 | 1 | 173 | 1 | 173 | 5.79e-115 | 323 |
| MS.gene08434.t1 | AT1G67430 | 65.318 | 173 | 16 | 1 | 1 | 173 | 1 | 129 | 3.54e-72 | 214 |
Find 48 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGAGTGTCTGTTCT+TGG | 0.191990 | 4.3:-16221971 | None:intergenic |
| TTACACTTGGTAGGGTTATC+AGG | 0.206537 | 4.3:-16218589 | None:intergenic |
| ATTATTTCTTTCTAGGTTAA+AGG | 0.215214 | 4.3:+16222147 | MS.gene08434:intron |
| TAGAGTGTCTGTTCTTGGCC+TGG | 0.303194 | 4.3:-16221966 | None:intergenic |
| TGCCCTTGACCAAGGCTAAA+AGG | 0.311470 | 4.3:+16221869 | MS.gene08434:CDS |
| TTCTTTCTAGGTTAAAGGTT+TGG | 0.354826 | 4.3:+16222152 | MS.gene08434:intron |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | 4.3:+16221935 | MS.gene08434:CDS |
| AGAGTGTCTGTTCTTGGCCT+GGG | 0.394437 | 4.3:-16221965 | None:intergenic |
| GCTTCTGTGCTTGATTGACT+TGG | 0.407265 | 4.3:-16222203 | None:intergenic |
| GCTTGCAGCCAACTGAGTCT+CGG | 0.420282 | 4.3:-16222501 | None:intergenic |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.422500 | 4.3:+16221934 | MS.gene08434:CDS |
| GGGAAACTGCCTTTGCCATC+AGG | 0.434248 | 4.3:+16221842 | MS.gene08434:CDS |
| AGACGTTCTTGCACACAAAC+AGG | 0.445626 | 4.3:+16221900 | MS.gene08434:CDS |
| GCCAAGAACAGACACTCTAA+TGG | 0.448442 | 4.3:+16221970 | MS.gene08434:CDS |
| ATAAACTTTGCTGACTTGAC+TGG | 0.448695 | 4.3:-16222006 | None:intergenic |
| TTACCTTGAAATGAACTCTA+AGG | 0.455514 | 4.3:-16218756 | None:intergenic |
| TGAGTTGATATTATCCGAAA+AGG | 0.456097 | 4.3:+16222369 | MS.gene08434:CDS |
| TGACCTTAGAGTTCATTTCA+AGG | 0.463608 | 4.3:+16218753 | MS.gene08434:CDS |
| TGGTGTTGGGAGGACAGCCC+AGG | 0.463667 | 4.3:+16221948 | MS.gene08434:CDS |
| CTTGCAGCCAACTGAGTCTC+GGG | 0.464449 | 4.3:-16222500 | None:intergenic |
| AATTGTACTTGCAGAACACT+AGG | 0.474152 | 4.3:+16221821 | MS.gene08434:intron |
| CAAGTTACTTACACTTGGTA+GGG | 0.483435 | 4.3:-16218597 | None:intergenic |
| GTCAGCACCACGAGCCTTGG+TGG | 0.484675 | 4.3:-16218734 | None:intergenic |
| ACATACGGTTTATTCTTCCA+TGG | 0.488201 | 4.3:-16222248 | None:intergenic |
| CCATTCAGACGTTTCTGTCG+TGG | 0.491424 | 4.3:+16221928 | MS.gene08434:CDS |
| CCACGACAGAAACGTCTGAA+TGG | 0.493513 | 4.3:-16221928 | None:intergenic |
| GACCAAGGCTAAAAGGTACT+TGG | 0.501746 | 4.3:+16221876 | MS.gene08434:CDS |
| AAGGTCAGCACCACGAGCCT+TGG | 0.507598 | 4.3:-16218737 | None:intergenic |
| ACAAGTTACTTACACTTGGT+AGG | 0.508381 | 4.3:-16218598 | None:intergenic |
| CATACGGTTTATTCTTCCAT+GGG | 0.512496 | 4.3:-16222247 | None:intergenic |
| AAAGGAAGAGGCAGTTATGA+AGG | 0.514907 | 4.3:+16222387 | MS.gene08434:CDS |
| CTGCATTCTTCAGCAAATCA+AGG | 0.518088 | 4.3:-16222029 | None:intergenic |
| GATATTATCCGAAAAGGAAG+AGG | 0.536807 | 4.3:+16222375 | MS.gene08434:CDS |
| GGAAGAGGCAGTTATGAAGG+AGG | 0.540572 | 4.3:+16222390 | MS.gene08434:CDS |
| CGCAGAACATACAGAGCCCA+TGG | 0.557011 | 4.3:+16222231 | MS.gene08434:CDS |
| GGGCAACTTCCTGATGGCAA+AGG | 0.587242 | 4.3:-16221851 | None:intergenic |
| GGTCAAGGGCAACTTCCTGA+TGG | 0.590928 | 4.3:-16221857 | None:intergenic |
| ATTGTACTTGCAGAACACTA+GGG | 0.598625 | 4.3:+16221822 | MS.gene08434:intron |
| TTTACAGCCCGAGACTCAGT+TGG | 0.604108 | 4.3:+16222493 | MS.gene08434:intron |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.609236 | 4.3:+16221938 | MS.gene08434:CDS |
| ACAGAAACGTCTGAATGGAA+TGG | 0.621533 | 4.3:-16221923 | None:intergenic |
| AATATCAACTCAATGTGGCA+AGG | 0.622661 | 4.3:-16222358 | None:intergenic |
| CAGGAAGTTGCCCTTGACCA+AGG | 0.624452 | 4.3:+16221861 | MS.gene08434:CDS |
| CGGATAATATCAACTCAATG+TGG | 0.641582 | 4.3:-16222363 | None:intergenic |
| AACAGACACTCTAATGGACA+AGG | 0.647485 | 4.3:+16221976 | MS.gene08434:CDS |
| ACTCTAATGGACAAGGAAGG+TGG | 0.651493 | 4.3:+16221983 | MS.gene08434:CDS |
| TATGCAGCCACCAAGGCTCG+TGG | 0.654672 | 4.3:+16218727 | MS.gene08434:intron |
| GACACTCTAATGGACAAGGA+AGG | 0.666626 | 4.3:+16221980 | MS.gene08434:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATTAATAAAACATAAT+TGG | - | chr4.3:16221735-16221754 | None:intergenic | 10.0% |
| !! | ATCATTAATAAAACATAATT+GGG | - | chr4.3:16221734-16221753 | None:intergenic | 10.0% |
| !! | TATTAATTAAACTTGATTAA+CGG | - | chr4.3:16220864-16220883 | None:intergenic | 10.0% |
| !!! | AATTTTATCTATATTTTAAC+TGG | - | chr4.3:16219516-16219535 | None:intergenic | 10.0% |
| !!! | ATTTTAATATTTGAAACATA+CGG | - | chr4.3:16222266-16222285 | None:intergenic | 10.0% |
| !! | AATACAGTATAAAAACAATA+TGG | - | chr4.3:16219372-16219391 | None:intergenic | 15.0% |
| !! | GATTATAATGAAAAAAATTG+TGG | + | chr4.3:16220102-16220121 | MS.gene08434:intron | 15.0% |
| !! | TAATAGTTTATAGATGAAAA+AGG | + | chr4.3:16220595-16220614 | MS.gene08434:intron | 15.0% |
| !! | TGTAAAAATAATAACAGAAT+GGG | - | chr4.3:16222479-16222498 | None:intergenic | 15.0% |
| !!! | AATGTTAATTATTTCTTTCT+AGG | + | chr4.3:16222140-16222159 | MS.gene08434:intron | 15.0% |
| !!! | AGAATAATTGTTTTTTTTGT+TGG | + | chr4.3:16218657-16218676 | MS.gene08434:intron | 15.0% |
| !!! | ATATAAAACTCATTGTTATT+GGG | + | chr4.3:16221018-16221037 | MS.gene08434:intron | 15.0% |
| !!! | CAACTTGTATTTTTAATTAA+AGG | + | chr4.3:16221495-16221514 | MS.gene08434:intron | 15.0% |
| !! | AAAGTAACCAAACAATAATA+TGG | - | chr4.3:16221695-16221714 | None:intergenic | 20.0% |
| !! | AAATGTTTACTCAATAACAT+TGG | - | chr4.3:16219262-16219281 | None:intergenic | 20.0% |
| !! | ACAACAATAAAATTGCATTT+AGG | - | chr4.3:16219078-16219097 | None:intergenic | 20.0% |
| !! | AGAAATGTAGTTTGAAAATA+TGG | + | chr4.3:16219176-16219195 | MS.gene08434:intron | 20.0% |
| !! | AGAACCTTATATCATAAAAA+GGG | - | chr4.3:16220702-16220721 | None:intergenic | 20.0% |
| !! | ATGTAATTTGAATAACAAAC+AGG | - | chr4.3:16219430-16219449 | None:intergenic | 20.0% |
| !! | CAACAATAAAATTGCATTTA+GGG | - | chr4.3:16219077-16219096 | None:intergenic | 20.0% |
| !! | CTGTAAAAATAATAACAGAA+TGG | - | chr4.3:16222480-16222499 | None:intergenic | 20.0% |
| !! | GAAACCTTTAATCATAAAAA+GGG | - | chr4.3:16220200-16220219 | None:intergenic | 20.0% |
| !! | GATATAAAACTCATTGTTAT+TGG | + | chr4.3:16221017-16221036 | MS.gene08434:intron | 20.0% |
| !! | TAAGTAATCAAGTAATAATG+AGG | - | chr4.3:16221260-16221279 | None:intergenic | 20.0% |
| !! | TACTATTTATTGATCATTGA+TGG | + | chr4.3:16219742-16219761 | MS.gene08434:intron | 20.0% |
| !! | TACTTGATTACTTAATACAT+AGG | + | chr4.3:16221266-16221285 | MS.gene08434:intron | 20.0% |
| !! | TATAATGAATGAAGAAACAT+CGG | - | chr4.3:16220747-16220766 | None:intergenic | 20.0% |
| !! | TGAACCTTGAATAATAAAAA+GGG | - | chr4.3:16219672-16219691 | None:intergenic | 20.0% |
| !!! | AGATAATAACCATGATTTTT+GGG | + | chr4.3:16220664-16220683 | MS.gene08434:intron | 20.0% |
| !!! | ATATAAAACCCATTGTTATT+GGG | + | chr4.3:16219973-16219992 | MS.gene08434:intron | 20.0% |
| !!! | ATTATTTCTTTCTAGGTTAA+AGG | + | chr4.3:16222147-16222166 | MS.gene08434:intron | 20.0% |
| !!! | ATTTATTTATTTTTTTCGGC+AGG | + | chr4.3:16222431-16222450 | MS.gene08434:intron | 20.0% |
| !!! | TGTTTGTTTTTCGAATTTTT+AGG | + | chr4.3:16218549-16218568 | MS.gene08434:intron | 20.0% |
| !!! | TTTTTGTTGGAATGAATTAT+TGG | + | chr4.3:16218670-16218689 | MS.gene08434:intron | 20.0% |
| ! | AAACAATATGGATCACAAAA+AGG | - | chr4.3:16219360-16219379 | None:intergenic | 25.0% |
| ! | ATGATTAAAGGTTTCGTAAA+TGG | + | chr4.3:16220205-16220224 | MS.gene08434:intron | 25.0% |
| ! | ATGTAAGCTGCAAAAAAAAA+AGG | - | chr4.3:16222331-16222350 | None:intergenic | 25.0% |
| ! | ATGTAATATTGAACTGGAAA+AGG | - | chr4.3:16221307-16221326 | None:intergenic | 25.0% |
| ! | ATTACATGGAAAAGATCTAT+AGG | + | chr4.3:16221320-16221339 | MS.gene08434:intron | 25.0% |
| ! | CAAGTAAAAATAGCATTTAG+AGG | - | chr4.3:16219119-16219138 | None:intergenic | 25.0% |
| ! | CAGAACCTTATATCATAAAA+AGG | - | chr4.3:16220703-16220722 | None:intergenic | 25.0% |
| ! | CGAAACCTTTAATCATAAAA+AGG | - | chr4.3:16220201-16220220 | None:intergenic | 25.0% |
| ! | CTCTAAACCATATTATTGTT+TGG | + | chr4.3:16221685-16221704 | MS.gene08434:intron | 25.0% |
| ! | CTTATATCATAAAAAGGGAA+TGG | - | chr4.3:16220697-16220716 | None:intergenic | 25.0% |
| ! | GAACTTATGTATTACTTTGA+TGG | + | chr4.3:16218876-16218895 | MS.gene08434:intron | 25.0% |
| ! | GATATAAAACCCATTGTTAT+TGG | + | chr4.3:16219972-16219991 | MS.gene08434:intron | 25.0% |
| ! | GTGAACCTTGAATAATAAAA+AGG | - | chr4.3:16219673-16219692 | None:intergenic | 25.0% |
| ! | TTGAAAATATGGAAAAAGCA+GGG | + | chr4.3:16219187-16219206 | MS.gene08434:intron | 25.0% |
| ! | TTTGAAAATATGGAAAAAGC+AGG | + | chr4.3:16219186-16219205 | MS.gene08434:intron | 25.0% |
| !! | AACTCCCTTTTTATTATTCA+AGG | + | chr4.3:16219665-16219684 | MS.gene08434:intron | 25.0% |
| !! | AGATAATAGCCATGATTTTT+GGG | + | chr4.3:16219634-16219653 | MS.gene08434:intron | 25.0% |
| !! | CATTCCCTTTTTATGATATA+AGG | + | chr4.3:16220695-16220714 | MS.gene08434:intron | 25.0% |
| !! | GAGATAATAACCATGATTTT+TGG | + | chr4.3:16220663-16220682 | MS.gene08434:intron | 25.0% |
| !! | TTTTCATAGAGTTATGTATC+AGG | - | chr4.3:16219567-16219586 | None:intergenic | 25.0% |
| !! | TTTTCCAGTTCAATATTACA+TGG | + | chr4.3:16221306-16221325 | MS.gene08434:intron | 25.0% |
| !! | TTTTCCATGTAATATTGAAC+TGG | - | chr4.3:16221313-16221332 | None:intergenic | 25.0% |
| !!! | TCAGAGAATGTTTTTTACTT+AGG | + | chr4.3:16221619-16221638 | MS.gene08434:intron | 25.0% |
| !!! | TTGTTGTTTATGTATTACTG+AGG | + | chr4.3:16219400-16219419 | MS.gene08434:intron | 25.0% |
| AACAATAAAAGTAGCAGTAG+TGG | - | chr4.3:16221763-16221782 | None:intergenic | 30.0% | |
| AACCTGATTGAAAAAAGAAG+TGG | + | chr4.3:16220909-16220928 | MS.gene08434:intron | 30.0% | |
| AATCATAAAAAGGGAACGAA+GGG | - | chr4.3:16220191-16220210 | None:intergenic | 30.0% | |
| AATGTGCATCGTTAAATTCA+GGG | + | chr4.3:16220139-16220158 | MS.gene08434:intron | 30.0% | |
| ACAATAAAAGTAGCAGTAGT+GGG | - | chr4.3:16221762-16221781 | None:intergenic | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | chr4.3:16219812-16219831 | None:intergenic | 30.0% | |
| AGCTATTAGAACAGTAGTTA+TGG | + | chr4.3:16219537-16219556 | MS.gene08434:intron | 30.0% | |
| ATAAGTCTGAAGGTTAAAAG+AGG | - | chr4.3:16219234-16219253 | None:intergenic | 30.0% | |
| ATAGACCTCTTGTAAAATTC+AGG | + | chr4.3:16219610-16219629 | MS.gene08434:intron | 30.0% | |
| ATATAAGGTTCTGTAATCGA+TGG | + | chr4.3:16220710-16220729 | MS.gene08434:intron | 30.0% | |
| ATCTCCCTGAATTTAACAAA+AGG | - | chr4.3:16220648-16220667 | None:intergenic | 30.0% | |
| ATGGTACAAACTGCAATTAA+GGG | + | chr4.3:16218895-16218914 | MS.gene08434:intron | 30.0% | |
| ATTGAAAAAAAGCAGTGGTT+TGG | + | chr4.3:16220402-16220421 | MS.gene08434:intron | 30.0% | |
| GAATAATAAAAAGGGAGTTG+AGG | - | chr4.3:16219664-16219683 | None:intergenic | 30.0% | |
| TAACCCAATAACTGAATACA+TGG | - | chr4.3:16221167-16221186 | None:intergenic | 30.0% | |
| TAACGCAAAAGAGATAATCA+TGG | - | chr4.3:16220314-16220333 | None:intergenic | 30.0% | |
| TAATCATAAAAAGGGAACGA+AGG | - | chr4.3:16220192-16220211 | None:intergenic | 30.0% | |
| TAGACCTCTTGTAAAATTCA+GGG | + | chr4.3:16219611-16219630 | MS.gene08434:intron | 30.0% | |
| TCTCCCTGAATTTAACAAAA+GGG | - | chr4.3:16220647-16220666 | None:intergenic | 30.0% | |
| TGAAAATATGGAAAAAGCAG+GGG | + | chr4.3:16219188-16219207 | MS.gene08434:intron | 30.0% | |
| TGACCATGTATTCAGTTATT+GGG | + | chr4.3:16221161-16221180 | MS.gene08434:intron | 30.0% | |
| TTACACAAGTTACTTACACT+TGG | - | chr4.3:16218605-16218624 | None:intergenic | 30.0% | |
| TTACCTTGAAATGAACTCTA+AGG | - | chr4.3:16218759-16218778 | None:intergenic | 30.0% | |
| TTCTTTCTAGGTTAAAGGTT+TGG | + | chr4.3:16222152-16222171 | MS.gene08434:intron | 30.0% | |
| TTGACCATGTATTCAGTTAT+TGG | + | chr4.3:16221160-16221179 | MS.gene08434:intron | 30.0% | |
| TTTATAGATGAAAAAGGCAG+TGG | + | chr4.3:16220601-16220620 | MS.gene08434:intron | 30.0% | |
| TTTATATCCCTGAAGGTTAT+GGG | - | chr4.3:16221005-16221024 | None:intergenic | 30.0% | |
| ! | ATTGATGGTTCAGTAAACAA+TGG | + | chr4.3:16221071-16221090 | MS.gene08434:intron | 30.0% |
| ! | CGTTCCCTTTTTATGATTAA+AGG | + | chr4.3:16220193-16220212 | MS.gene08434:intron | 30.0% |
| ! | GAGATAATAGCCATGATTTT+TGG | + | chr4.3:16219633-16219652 | MS.gene08434:intron | 30.0% |
| ! | TTGATCATCAGGTTTTTCTA+TGG | - | chr4.3:16221346-16221365 | None:intergenic | 30.0% |
| ! | TTTTATATCCCTGAAGGTTA+CGG | - | chr4.3:16219961-16219980 | None:intergenic | 30.0% |
| ! | TTTTATATCCCTGAAGGTTA+TGG | - | chr4.3:16219961-16219980 | None:intergenic | 30.0% |
| !! | AATGAGTTTTATATCCCTGA+AGG | - | chr4.3:16221012-16221031 | None:intergenic | 30.0% |
| !! | TGAGTTGATATTATCCGAAA+AGG | + | chr4.3:16222369-16222388 | MS.gene08434:CDS | 30.0% |
| AAAAACCTGATGATCAATGC+AGG | + | chr4.3:16221349-16221368 | MS.gene08434:intron | 35.0% | |
| AAAAATAACCCACTCCAAAC+AGG | - | chr4.3:16218921-16218940 | None:intergenic | 35.0% | |
| AACCTGATTGAAAAAAGCAG+TGG | + | chr4.3:16219910-16219929 | MS.gene08434:intron | 35.0% | |
| AACCTGTTTGAAAAAAGCAG+TGG | + | chr4.3:16220955-16220974 | MS.gene08434:intron | 35.0% | |
| AATATCAACTCAATGTGGCA+AGG | - | chr4.3:16222361-16222380 | None:intergenic | 35.0% | |
| AATTGTACTTGCAGAACACT+AGG | + | chr4.3:16221821-16221840 | MS.gene08434:intron | 35.0% | |
| ACAAGTTACTTACACTTGGT+AGG | - | chr4.3:16218601-16218620 | None:intergenic | 35.0% | |
| ACATACGGTTTATTCTTCCA+TGG | - | chr4.3:16222251-16222270 | None:intergenic | 35.0% | |
| ACCAAACAGCCTAAATATTG+AGG | - | chr4.3:16220831-16220850 | None:intergenic | 35.0% | |
| ACCTCAATATTTAGGCTGTT+TGG | + | chr4.3:16220827-16220846 | MS.gene08434:intron | 35.0% | |
| ACCTGATTGAAAAAAAGCAG+TGG | + | chr4.3:16220397-16220416 | MS.gene08434:intron | 35.0% | |
| AGGATATCACAATCATTGAC+TGG | + | chr4.3:16221515-16221534 | MS.gene08434:intron | 35.0% | |
| ATAGGTTCACCCAATAACAA+TGG | - | chr4.3:16219985-16220004 | None:intergenic | 35.0% | |
| ATTCAAGGTTCACCAAATGA+GGG | + | chr4.3:16219680-16219699 | MS.gene08434:intron | 35.0% | |
| ATTGTACTTGCAGAACACTA+GGG | + | chr4.3:16221822-16221841 | MS.gene08434:intron | 35.0% | |
| CAAGTTACTTACACTTGGTA+GGG | - | chr4.3:16218600-16218619 | None:intergenic | 35.0% | |
| CAATGTGCATCGTTAAATTC+AGG | + | chr4.3:16220138-16220157 | MS.gene08434:intron | 35.0% | |
| CATACGGTTTATTCTTCCAT+GGG | - | chr4.3:16222250-16222269 | None:intergenic | 35.0% | |
| CCTAAATATTGAGGTTAACC+AGG | - | chr4.3:16220822-16220841 | None:intergenic | 35.0% | |
| CCTGGTTAACCTCAATATTT+AGG | + | chr4.3:16220819-16220838 | MS.gene08434:intron | 35.0% | |
| CGGATAATATCAACTCAATG+TGG | - | chr4.3:16222366-16222385 | None:intergenic | 35.0% | |
| GAAGGGTCACATAAAAATCA+TGG | - | chr4.3:16220174-16220193 | None:intergenic | 35.0% | |
| GATATTATCCGAAAAGGAAG+AGG | + | chr4.3:16222375-16222394 | MS.gene08434:CDS | 35.0% | |
| GATGGTACAAACTGCAATTA+AGG | + | chr4.3:16218894-16218913 | MS.gene08434:intron | 35.0% | |
| GATTGAAAAAAGAAGTGGTC+TGG | + | chr4.3:16220914-16220933 | MS.gene08434:intron | 35.0% | |
| GCAAGCAAAAAGAAAGCTTA+AGG | + | chr4.3:16222518-16222537 | MS.gene08434:CDS | 35.0% | |
| GCCTCATTACTTAGATTGTT+TGG | + | chr4.3:16219808-16219827 | MS.gene08434:intron | 35.0% | |
| GCTAAGTAGTGAGTTAAACA+AGG | - | chr4.3:16219458-16219477 | None:intergenic | 35.0% | |
| GTAAAAAGCTGTGTTGTGAA+GGG | + | chr4.3:16221569-16221588 | MS.gene08434:intron | 35.0% | |
| GTACAAAATGTACCCTCATT+TGG | - | chr4.3:16219695-16219714 | None:intergenic | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | chr4.3:16220003-16220022 | None:intergenic | 35.0% | |
| GTTGTCACTGTCAAATTTGT+TGG | + | chr4.3:16219093-16219112 | MS.gene08434:intron | 35.0% | |
| GTTTAACTCACTACTTAGCT+GGG | + | chr4.3:16219459-16219478 | MS.gene08434:intron | 35.0% | |
| TAGGTTCACCCAATAACAAT+GGG | - | chr4.3:16219984-16220003 | None:intergenic | 35.0% | |
| TATTCAAGGTTCACCAAATG+AGG | + | chr4.3:16219679-16219698 | MS.gene08434:intron | 35.0% | |
| TCTTTGTGATACGTGATTGA+TGG | + | chr4.3:16221056-16221075 | MS.gene08434:intron | 35.0% | |
| TGACCTTAGAGTTCATTTCA+AGG | + | chr4.3:16218753-16218772 | MS.gene08434:CDS | 35.0% | |
| TGATTTAGCCACCTTCTTAA+TGG | + | chr4.3:16221217-16221236 | MS.gene08434:intron | 35.0% | |
| TGTAAAAAGCTGTGTTGTGA+AGG | + | chr4.3:16221568-16221587 | MS.gene08434:intron | 35.0% | |
| TGTTTAACTCACTACTTAGC+TGG | + | chr4.3:16219458-16219477 | MS.gene08434:intron | 35.0% | |
| TGTTTCATTTAGCATCTGAG+TGG | + | chr4.3:16219770-16219789 | MS.gene08434:intron | 35.0% | |
| TTTAACTCACTACTTAGCTG+GGG | + | chr4.3:16219460-16219479 | MS.gene08434:intron | 35.0% | |
| TTTATATCCCTGAAGGTTAC+GGG | - | chr4.3:16219960-16219979 | None:intergenic | 35.0% | |
| ! | AAATTGCATTTAGGGCAGTT+TGG | - | chr4.3:16219069-16219088 | None:intergenic | 35.0% |
| ! | ATCTCCCTGAATTTTACAAG+AGG | - | chr4.3:16219618-16219637 | None:intergenic | 35.0% |
| ! | ATTGGTAGCTATAAGTCTGA+AGG | - | chr4.3:16219244-16219263 | None:intergenic | 35.0% |
| ! | GGACCCTTTTGTTAAATTCA+GGG | + | chr4.3:16220641-16220660 | MS.gene08434:intron | 35.0% |
| ! | TGGACCCTTTTGTTAAATTC+AGG | + | chr4.3:16220640-16220659 | MS.gene08434:intron | 35.0% |
| !! | AATGGGTTTTATATCCCTGA+AGG | - | chr4.3:16219967-16219986 | None:intergenic | 35.0% |
| !! | ATAAACTTTGCTGACTTGAC+TGG | - | chr4.3:16222009-16222028 | None:intergenic | 35.0% |
| !! | GAGGGTACATTTTGTACATA+TGG | + | chr4.3:16219698-16219717 | MS.gene08434:intron | 35.0% |
| !! | GTGGTTTGTTGTTATGTGAA+TGG | + | chr4.3:16220620-16220639 | MS.gene08434:intron | 35.0% |
| !! | TAATAGCCATGATTTTTGGG+AGG | + | chr4.3:16219637-16219656 | MS.gene08434:intron | 35.0% |
| !!! | ACCACTGCTTTTTTTCAATC+AGG | - | chr4.3:16220401-16220420 | None:intergenic | 35.0% |
| !!! | GACCACTTCTTTTTTCAATC+AGG | - | chr4.3:16220914-16220933 | None:intergenic | 35.0% |
| !!! | TTTTTTATATGCAGCCACCA+AGG | + | chr4.3:16218720-16218739 | MS.gene08434:intron | 35.0% |
| AAAGGAAGAGGCAGTTATGA+AGG | + | chr4.3:16222387-16222406 | MS.gene08434:CDS | 40.0% | |
| AAGCAACTAGGCCATTAAGA+AGG | - | chr4.3:16221231-16221250 | None:intergenic | 40.0% | |
| AATCATGGATCTATGCCACT+TGG | - | chr4.3:16220299-16220318 | None:intergenic | 40.0% | |
| ACAGAAACGTCTGAATGGAA+TGG | - | chr4.3:16221926-16221945 | None:intergenic | 40.0% | |
| ACAGGTTGTTGCATGACTAT+AGG | - | chr4.3:16220942-16220961 | None:intergenic | 40.0% | |
| ACTGAAGGTTCAGTAAACGA+TGG | + | chr4.3:16220026-16220045 | MS.gene08434:intron | 40.0% | |
| AGCACAACTTAAACAACAGC+AGG | - | chr4.3:16219329-16219348 | None:intergenic | 40.0% | |
| ATATCACTGACATTTCCGAG+AGG | - | chr4.3:16221399-16221418 | None:intergenic | 40.0% | |
| ATGAGGCAAATCAAGCAACT+AGG | - | chr4.3:16221243-16221262 | None:intergenic | 40.0% | |
| CTGCATTCTTCAGCAAATCA+AGG | - | chr4.3:16222032-16222051 | None:intergenic | 40.0% | |
| GATTGAAAAAAGCAGTGGTC+TGG | + | chr4.3:16219915-16219934 | MS.gene08434:intron | 40.0% | |
| GCACAACTTAAACAACAGCA+GGG | - | chr4.3:16219328-16219347 | None:intergenic | 40.0% | |
| GTTTGAAAAAAGCAGTGGTC+TGG | + | chr4.3:16220960-16220979 | MS.gene08434:intron | 40.0% | |
| TCTATATCTAGCAGTCCTCT+CGG | + | chr4.3:16221381-16221400 | MS.gene08434:intron | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | chr4.3:16220011-16220030 | MS.gene08434:intron | 40.0% | |
| TTAACTCACTACTTAGCTGG+GGG | + | chr4.3:16219461-16219480 | MS.gene08434:intron | 40.0% | |
| TTACACTTGGTAGGGTTATC+AGG | - | chr4.3:16218592-16218611 | None:intergenic | 40.0% | |
| ! | AACAGACACTCTAATGGACA+AGG | + | chr4.3:16221976-16221995 | MS.gene08434:CDS | 40.0% |
| ! | AGAAACCTGCATTGATCATC+AGG | - | chr4.3:16221357-16221376 | None:intergenic | 40.0% |
| ! | CATAACTGCCTCTTCCTTTT+CGG | - | chr4.3:16222386-16222405 | None:intergenic | 40.0% |
| ! | TCCATTAGAGTGTCTGTTCT+TGG | - | chr4.3:16221974-16221993 | None:intergenic | 40.0% |
| ! | TTAAAAGAGGCATGTTCCCA+TGG | - | chr4.3:16219221-16219240 | None:intergenic | 40.0% |
| ! | TTCCAAGTACCTTTTAGCCT+TGG | - | chr4.3:16221881-16221900 | None:intergenic | 40.0% |
| !! | CTGTTGTTTAAGTTGTGCTG+AGG | + | chr4.3:16219330-16219349 | MS.gene08434:intron | 40.0% |
| !!! | GACCACTGCTTTTTTCAAAC+AGG | - | chr4.3:16220960-16220979 | None:intergenic | 40.0% |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | chr4.3:16219915-16219934 | None:intergenic | 40.0% |
| !!! | TACCTTTTAGCCTTGGTCAA+GGG | - | chr4.3:16221874-16221893 | None:intergenic | 40.0% |
| AACCAGGAACTATTCCACAC+AGG | - | chr4.3:16220806-16220825 | None:intergenic | 45.0% | |
| AATTAAGGGCCTGTTTGGAG+TGG | + | chr4.3:16218909-16218928 | MS.gene08434:intron | 45.0% | |
| ACTGCAATTAAGGGCCTGTT+TGG | + | chr4.3:16218904-16218923 | MS.gene08434:intron | 45.0% | |
| AGACGTTCTTGCACACAAAC+AGG | + | chr4.3:16221900-16221919 | MS.gene08434:CDS | 45.0% | |
| ATATCCCTGAAGGTTATGGG+TGG | - | chr4.3:16221002-16221021 | None:intergenic | 45.0% | |
| CAACTAGGCCATTAAGAAGG+TGG | - | chr4.3:16221228-16221247 | None:intergenic | 45.0% | |
| CACAGGCTACTTGAAACACT+CGG | - | chr4.3:16220789-16220808 | None:intergenic | 45.0% | |
| CATCTGAGTGGCATATTTCC+TGG | + | chr4.3:16219782-16219801 | MS.gene08434:intron | 45.0% | |
| GAAGGTGGCTAAATCAAGAC+AGG | - | chr4.3:16221213-16221232 | None:intergenic | 45.0% | |
| GCCAAGAACAGACACTCTAA+TGG | + | chr4.3:16221970-16221989 | MS.gene08434:CDS | 45.0% | |
| GCTTCTGTGCTTGATTGACT+TGG | - | chr4.3:16222206-16222225 | None:intergenic | 45.0% | |
| GGAGCTTCACCCAAAAATCA+TGG | - | chr4.3:16220676-16220695 | None:intergenic | 45.0% | |
| TGAGGTCCTCCCAAAAATCA+TGG | - | chr4.3:16219646-16219665 | None:intergenic | 45.0% | |
| ! | AAAGCAGGGGTATGTTACCA+TGG | + | chr4.3:16219201-16219220 | MS.gene08434:intron | 45.0% |
| ! | AAGCAGGGGTATGTTACCAT+GGG | + | chr4.3:16219202-16219221 | MS.gene08434:intron | 45.0% |
| ! | ACTCTAATGGACAAGGAAGG+TGG | + | chr4.3:16221983-16222002 | MS.gene08434:CDS | 45.0% |
| ! | AGTGTTTCAAGTAGCCTGTG+TGG | + | chr4.3:16220789-16220808 | MS.gene08434:intron | 45.0% |
| ! | ATTAAGGGCCTGTTTGGAGT+GGG | + | chr4.3:16218910-16218929 | MS.gene08434:intron | 45.0% |
| ! | GACACTCTAATGGACAAGGA+AGG | + | chr4.3:16221980-16221999 | MS.gene08434:CDS | 45.0% |
| ! | GCATTTAGGGCAGTTTGGAT+TGG | - | chr4.3:16219064-16219083 | None:intergenic | 45.0% |
| ! | TCTAAGTAATGAGGCTAGCC+AGG | - | chr4.3:16219803-16219822 | None:intergenic | 45.0% |
| !! | GACCAAGGCTAAAAGGTACT+TGG | + | chr4.3:16221876-16221895 | MS.gene08434:CDS | 45.0% |
| !! | TATGGGTGGACTGCTCATAT+AGG | - | chr4.3:16220988-16221007 | None:intergenic | 45.0% |
| !!! | GTACCTTTTAGCCTTGGTCA+AGG | - | chr4.3:16221875-16221894 | None:intergenic | 45.0% |
| !! | AAAAAAATAAATAAATAACA+TGG | - | chr4.3:16222427-16222446 | None:intergenic | 5.0% |
| !! | TAATTAATATTTGATATATT+TGG | + | chr4.3:16219876-16219895 | MS.gene08434:intron | 5.0% |
| !!! | TGTTATTTATTTATTTTTTT+CGG | + | chr4.3:16222427-16222446 | MS.gene08434:intron | 5.0% |
| AGACGTTTCTGTCGTGGTGT+TGG | + | chr4.3:16221934-16221953 | MS.gene08434:CDS | 50.0% | |
| AGCCTGTGTGGAATAGTTCC+TGG | + | chr4.3:16220801-16220820 | MS.gene08434:intron | 50.0% | |
| ATATCCCTGAAGGTTACGGG+TGG | - | chr4.3:16219957-16219976 | None:intergenic | 50.0% | |
| CAGTCCACCCATAACCTTCA+GGG | + | chr4.3:16220995-16221014 | MS.gene08434:intron | 50.0% | |
| CCACGACAGAAACGTCTGAA+TGG | - | chr4.3:16221931-16221950 | None:intergenic | 50.0% | |
| CCATTCAGACGTTTCTGTCG+TGG | + | chr4.3:16221928-16221947 | MS.gene08434:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | chr4.3:16221935-16221954 | MS.gene08434:CDS | 50.0% | |
| GGAAGAGGCAGTTATGAAGG+AGG | + | chr4.3:16222390-16222409 | MS.gene08434:CDS | 50.0% | |
| TGCCCTTGACCAAGGCTAAA+AGG | + | chr4.3:16221869-16221888 | MS.gene08434:CDS | 50.0% | |
| TGTTTCAAGCAGCCTCCAAG+TGG | + | chr4.3:16220281-16220300 | MS.gene08434:intron | 50.0% | |
| TTTACAGCCCGAGACTCAGT+TGG | + | chr4.3:16222493-16222512 | MS.gene08434:intron | 50.0% | |
| ! | AGAGTGTCTGTTCTTGGCCT+GGG | - | chr4.3:16221968-16221987 | None:intergenic | 50.0% |
| ! | CATGGATCTATGCCACTTGG+AGG | - | chr4.3:16220296-16220315 | None:intergenic | 50.0% |
| ! | TAGAGTGTCTGTTCTTGGCC+TGG | - | chr4.3:16221969-16221988 | None:intergenic | 50.0% |
| !! | TACGGGTGGACTGCTCATAA+AGG | - | chr4.3:16219943-16219962 | None:intergenic | 50.0% |
| !! | TACGGGTGGACTGCTCATAT+AGG | - | chr4.3:16220430-16220449 | None:intergenic | 50.0% |
| CAGGAAGTTGCCCTTGACCA+AGG | + | chr4.3:16221861-16221880 | MS.gene08434:CDS | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | chr4.3:16219950-16219969 | MS.gene08434:intron | 55.0% | |
| CGCAGAACATACAGAGCCCA+TGG | + | chr4.3:16222231-16222250 | MS.gene08434:CDS | 55.0% | |
| CTTGCAGCCAACTGAGTCTC+GGG | - | chr4.3:16222503-16222522 | None:intergenic | 55.0% | |
| GCAGTCCACCCATAACCTTC+AGG | + | chr4.3:16220994-16221013 | MS.gene08434:intron | 55.0% | |
| GCTTGCAGCCAACTGAGTCT+CGG | - | chr4.3:16222504-16222523 | None:intergenic | 55.0% | |
| GGGAAACTGCCTTTGCCATC+AGG | + | chr4.3:16221842-16221861 | MS.gene08434:CDS | 55.0% | |
| GGGCAACTTCCTGATGGCAA+AGG | - | chr4.3:16221854-16221873 | None:intergenic | 55.0% | |
| GGTCAAGGGCAACTTCCTGA+TGG | - | chr4.3:16221860-16221879 | None:intergenic | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | chr4.3:16221938-16221957 | MS.gene08434:CDS | 55.0% |
| AAGGTCAGCACCACGAGCCT+TGG | - | chr4.3:16218740-16218759 | None:intergenic | 60.0% | |
| GCAGTCCACCCGTAACCTTC+AGG | + | chr4.3:16219949-16219968 | MS.gene08434:intron | 60.0% | |
| TATGCAGCCACCAAGGCTCG+TGG | + | chr4.3:16218727-16218746 | MS.gene08434:intron | 60.0% | |
| GTCAGCACCACGAGCCTTGG+TGG | - | chr4.3:16218737-16218756 | None:intergenic | 65.0% | |
| ! | TGGTGTTGGGAGGACAGCCC+AGG | + | chr4.3:16221948-16221967 | MS.gene08434:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 16218459 | 16222538 | 16218459 | ID=MS.gene08434 |
| chr4.3 | mRNA | 16218459 | 16222538 | 16218459 | ID=MS.gene08434.t1;Parent=MS.gene08434 |
| chr4.3 | exon | 16218459 | 16218461 | 16218459 | ID=MS.gene08434.t1.exon1;Parent=MS.gene08434.t1 |
| chr4.3 | CDS | 16218459 | 16218461 | 16218459 | ID=cds.MS.gene08434.t1;Parent=MS.gene08434.t1 |
| chr4.3 | exon | 16218571 | 16218607 | 16218571 | ID=MS.gene08434.t1.exon2;Parent=MS.gene08434.t1 |
| chr4.3 | CDS | 16218571 | 16218607 | 16218571 | ID=cds.MS.gene08434.t1;Parent=MS.gene08434.t1 |
| chr4.3 | exon | 16218734 | 16218774 | 16218734 | ID=MS.gene08434.t1.exon3;Parent=MS.gene08434.t1 |
| chr4.3 | CDS | 16218734 | 16218774 | 16218734 | ID=cds.MS.gene08434.t1;Parent=MS.gene08434.t1 |
| chr4.3 | exon | 16221835 | 16222065 | 16221835 | ID=MS.gene08434.t1.exon4;Parent=MS.gene08434.t1 |
| chr4.3 | CDS | 16221835 | 16222065 | 16221835 | ID=cds.MS.gene08434.t1;Parent=MS.gene08434.t1 |
| chr4.3 | exon | 16222162 | 16222264 | 16222162 | ID=MS.gene08434.t1.exon5;Parent=MS.gene08434.t1 |
| chr4.3 | CDS | 16222162 | 16222264 | 16222162 | ID=cds.MS.gene08434.t1;Parent=MS.gene08434.t1 |
| chr4.3 | exon | 16222344 | 16222411 | 16222344 | ID=MS.gene08434.t1.exon6;Parent=MS.gene08434.t1 |
| chr4.3 | CDS | 16222344 | 16222411 | 16222344 | ID=cds.MS.gene08434.t1;Parent=MS.gene08434.t1 |
| chr4.3 | exon | 16222500 | 16222538 | 16222500 | ID=MS.gene08434.t1.exon7;Parent=MS.gene08434.t1 |
| chr4.3 | CDS | 16222500 | 16222538 | 16222500 | ID=cds.MS.gene08434.t1;Parent=MS.gene08434.t1 |
| Gene Sequence |
| Protein sequence |
