Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09204.t1 | XP_013446562.1 | 98.8 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 7.80E-90 | 339.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09204.t1 | Q93VI3 | 88.4 | 172 | 20 | 0 | 1 | 172 | 1 | 172 | 1.3e-82 | 307.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09204.t1 | I3SHA1 | 98.8 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 5.6e-90 | 339.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene09204 | 0.856969 | 2.25E-62 | -1.69E-46 |
| MS.gene049387 | MS.gene09204 | 0.813233 | 2.84E-51 | -1.69E-46 |
| MS.gene050134 | MS.gene09204 | 0.866853 | 2.10E-65 | -1.69E-46 |
| MS.gene051925 | MS.gene09204 | 0.917211 | 7.00E-86 | -1.69E-46 |
| MS.gene051927 | MS.gene09204 | 0.883772 | 3.38E-71 | -1.69E-46 |
| MS.gene052664 | MS.gene09204 | 0.840589 | 7.94E-58 | -1.69E-46 |
| MS.gene052666 | MS.gene09204 | 0.909664 | 4.43E-82 | -1.69E-46 |
| MS.gene053224 | MS.gene09204 | 0.843558 | 1.30E-58 | -1.69E-46 |
| MS.gene057272 | MS.gene09204 | 0.858273 | 9.22E-63 | -1.69E-46 |
| MS.gene057321 | MS.gene09204 | 0.812207 | 4.76E-51 | -1.69E-46 |
| MS.gene057641 | MS.gene09204 | 0.84889 | 4.59E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene09204 | 0.848853 | 4.70E-60 | -1.69E-46 |
| MS.gene059340 | MS.gene09204 | 0.839564 | 1.47E-57 | -1.69E-46 |
| MS.gene060432 | MS.gene09204 | 0.817629 | 2.99E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene09204 | 0.853053 | 3.08E-61 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09204.t1 | MTR_8g080460 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 2.00e-128 | 357 |
| MS.gene09204.t1 | MTR_3g085490 | 95.954 | 173 | 7 | 0 | 1 | 173 | 1 | 173 | 2.08e-126 | 352 |
| MS.gene09204.t1 | MTR_3g085490 | 95.266 | 169 | 8 | 0 | 1 | 169 | 1 | 169 | 8.65e-120 | 335 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09204.t1 | AT1G27400 | 87.861 | 173 | 21 | 0 | 1 | 173 | 1 | 173 | 1.59e-114 | 322 |
| MS.gene09204.t1 | AT1G67430 | 87.283 | 173 | 22 | 0 | 1 | 173 | 1 | 173 | 2.14e-114 | 322 |
| MS.gene09204.t1 | AT1G67430 | 64.162 | 173 | 18 | 1 | 1 | 173 | 1 | 129 | 2.16e-71 | 212 |
Find 50 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGAGTGTCTATTCT+TGG | 0.210303 | 4.1:-15221643 | None:intergenic |
| TCTTCTTGCTTGCTGCCAAC+TGG | 0.224595 | 4.1:-15222215 | None:intergenic |
| TTACACTTGGTAGGGTTATC+AGG | 0.253880 | 4.1:-15218353 | None:intergenic |
| TGCCCTTGACCAAGGCTAAA+AGG | 0.311470 | 4.1:+15221541 | MS.gene09204:CDS |
| TAGAGTGTCTATTCTTGGCC+TGG | 0.328430 | 4.1:-15221638 | None:intergenic |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | 4.1:+15221607 | MS.gene09204:CDS |
| TACTTTCTAGGTCAAAGGTT+TGG | 0.377018 | 4.1:+15221825 | MS.gene09204:intron |
| CTTCTTGCTTGCTGCCAACT+GGG | 0.392921 | 4.1:-15222214 | None:intergenic |
| CTTGCTGCCAACTGGGACTC+CGG | 0.394551 | 4.1:-15222207 | None:intergenic |
| GCTTCTGTGCTTGATTGACT+TGG | 0.407265 | 4.1:-15221876 | None:intergenic |
| AGAGTGTCTATTCTTGGCCT+GGG | 0.411697 | 4.1:-15221637 | None:intergenic |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.422500 | 4.1:+15221606 | MS.gene09204:CDS |
| GGGAAACTGCCTTTGCCATC+AGG | 0.434248 | 4.1:+15221514 | MS.gene09204:CDS |
| CAAGTCAGCGAAGTTTATCC+TGG | 0.440074 | 4.1:+15221683 | MS.gene09204:CDS |
| AGACGTTCTTGCACACAAAC+AGG | 0.445626 | 4.1:+15221572 | MS.gene09204:CDS |
| ATAAACTTCGCTGACTTGAC+TGG | 0.446611 | 4.1:-15221678 | None:intergenic |
| GAGGTCAGCACCACGAGCCT+TGG | 0.456110 | 4.1:-15218482 | None:intergenic |
| GTCAGCACCACGAGCCTTGG+TGG | 0.461811 | 4.1:-15218479 | None:intergenic |
| TGGTGTTGGGAGGACAGCCC+AGG | 0.463667 | 4.1:+15221620 | MS.gene09204:CDS |
| GCCAAGAATAGACACTCTAA+TGG | 0.473513 | 4.1:+15221642 | MS.gene09204:CDS |
| AATTGTACTTGCAGAACACT+AGG | 0.474152 | 4.1:+15221493 | MS.gene09204:intron |
| CCATTCAGACGTTTCTGTCG+TGG | 0.491424 | 4.1:+15221600 | MS.gene09204:CDS |
| TGACCTCAGAGTTCATTTCA+AGG | 0.493325 | 4.1:+15218498 | MS.gene09204:CDS |
| CCACGACAGAAACGTCTGAA+TGG | 0.493513 | 4.1:-15221600 | None:intergenic |
| ATTACTACTTTCTAGGTCAA+AGG | 0.496618 | 4.1:+15221820 | MS.gene09204:intron |
| GACCAAGGCTAAAAGGTACT+TGG | 0.501746 | 4.1:+15221548 | MS.gene09204:CDS |
| AGAAGTTGCTTACACTTGGT+AGG | 0.508381 | 4.1:-15218362 | None:intergenic |
| ACATACGGTTGATTCTTCCA+TGG | 0.528331 | 4.1:-15221921 | None:intergenic |
| CTGCATTCTTCAGCAAATCC+AGG | 0.531822 | 4.1:-15221701 | None:intergenic |
| GAAGTTGCTTACACTTGGTA+GGG | 0.534908 | 4.1:-15218361 | None:intergenic |
| GGAAGAGGCGGTTCAGAAAG+AGG | 0.535941 | 4.1:+15222084 | MS.gene09204:CDS |
| CATACGGTTGATTCTTCCAT+GGG | 0.548316 | 4.1:-15221920 | None:intergenic |
| CGCAGAACATACAGAGCCCA+TGG | 0.557011 | 4.1:+15221904 | MS.gene09204:CDS |
| GTTGGCAGCAAGCAAGAAGA+GGG | 0.565267 | 4.1:+15222218 | MS.gene09204:CDS |
| GGGCAACTTCCTGATGGCAA+AGG | 0.587242 | 4.1:-15221523 | None:intergenic |
| GGTCAAGGGCAACTTCCTGA+TGG | 0.590928 | 4.1:-15221529 | None:intergenic |
| AGTTGGCAGCAAGCAAGAAG+AGG | 0.597913 | 4.1:+15222217 | MS.gene09204:CDS |
| ATTGTACTTGCAGAACACTA+GGG | 0.598625 | 4.1:+15221494 | MS.gene09204:intron |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.609236 | 4.1:+15221610 | MS.gene09204:CDS |
| AAAATCAACTCAATGTGGCA+AGG | 0.612514 | 4.1:-15222052 | None:intergenic |
| TTTCCAGCCGGAGTCCCAGT+TGG | 0.613767 | 4.1:+15222200 | MS.gene09204:intron |
| TTTATCTGAAAAGGAAGAGG+CGG | 0.620263 | 4.1:+15222072 | MS.gene09204:CDS |
| ACAGAAACGTCTGAATGGAA+TGG | 0.621533 | 4.1:-15221595 | None:intergenic |
| CAGATAAAATCAACTCAATG+TGG | 0.623662 | 4.1:-15222057 | None:intergenic |
| CAGGAAGTTGCCCTTGACCA+AGG | 0.624452 | 4.1:+15221533 | MS.gene09204:CDS |
| CATGCAGCCACCAAGGCTCG+TGG | 0.636269 | 4.1:+15218472 | MS.gene09204:intron |
| GACACTCTAATGGACAAGGA+AGG | 0.649233 | 4.1:+15221652 | MS.gene09204:CDS |
| TTACCTTGAAATGAACTCTG+AGG | 0.651324 | 4.1:-15218501 | None:intergenic |
| ACTCTAATGGACAAGGAAGG+TGG | 0.651493 | 4.1:+15221655 | MS.gene09204:CDS |
| AATAGACACTCTAATGGACA+AGG | 0.667364 | 4.1:+15221648 | MS.gene09204:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTTTTTTTATA+AGG | + | chr4.1:15218780-15218799 | MS.gene09204:intron | 0.0% |
| !! | AATCATTAATAAAACATAAT+TGG | - | chr4.1:15221399-15221418 | None:intergenic | 10.0% |
| !! | ATCATTAATAAAACATAATT+GGG | - | chr4.1:15221398-15221417 | None:intergenic | 10.0% |
| !! | TATATTAATTGAAATGAATA+AGG | - | chr4.1:15219686-15219705 | None:intergenic | 10.0% |
| !! | TTCATAAAAAAATCATATAA+AGG | - | chr4.1:15221454-15221473 | None:intergenic | 10.0% |
| !!! | TGTTTTATTATTATAGATTA+TGG | + | chr4.1:15220503-15220522 | MS.gene09204:intron | 10.0% |
| !! | TATATAATCAAGTAATAATG+AGG | - | chr4.1:15221050-15221069 | None:intergenic | 15.0% |
| !! | TATTGCTTATTTAATTGTTT+CGG | + | chr4.1:15222135-15222154 | MS.gene09204:intron | 15.0% |
| !!! | ATATAAAACTCATTGTTATT+GGG | + | chr4.1:15220809-15220828 | MS.gene09204:intron | 15.0% |
| !!! | ATTTAGTTTATAGATGAAAA+AGG | + | chr4.1:15220541-15220560 | MS.gene09204:intron | 15.0% |
| !!! | CAACTTGTATTTTTAATTAA+AGG | + | chr4.1:15221287-15221306 | MS.gene09204:intron | 15.0% |
| !!! | TAATAACCATGATTTTTTTA+AGG | + | chr4.1:15220613-15220632 | MS.gene09204:intron | 15.0% |
| !!! | TTTTTATAAGGTAATAGATA+AGG | + | chr4.1:15218792-15218811 | MS.gene09204:intron | 15.0% |
| !! | AGAAATGTAGTTTGAAAATT+TGG | + | chr4.1:15218917-15218936 | MS.gene09204:intron | 20.0% |
| !! | AGAACCTTAAATCATAAAAA+GGG | - | chr4.1:15220648-15220667 | None:intergenic | 20.0% |
| !! | ATGAAGTTAATTGATATACT+TGG | + | chr4.1:15219708-15219727 | MS.gene09204:intron | 20.0% |
| !! | ATGATTATAGGTTTCATAAA+TGG | + | chr4.1:15220011-15220030 | MS.gene09204:intron | 20.0% |
| !! | GAAACCTATAATCATAAAAA+GGG | - | chr4.1:15220006-15220025 | None:intergenic | 20.0% |
| !! | GATATAAAACTCATTGTTAT+TGG | + | chr4.1:15220808-15220827 | MS.gene09204:intron | 20.0% |
| !! | TACAACAAAAAATGAGTATT+AGG | - | chr4.1:15218605-15218624 | None:intergenic | 20.0% |
| !! | TACTAATTATTGATCATTGA+TGG | + | chr4.1:15219582-15219601 | MS.gene09204:intron | 20.0% |
| !! | TACTTGATTATATAAGACAT+AGG | + | chr4.1:15221056-15221075 | MS.gene09204:intron | 20.0% |
| !! | TGAAACCTATAATCATAAAA+AGG | - | chr4.1:15220007-15220026 | None:intergenic | 20.0% |
| !!! | ACTAAAACTTTTCTATGTAA+TGG | - | chr4.1:15219140-15219159 | None:intergenic | 20.0% |
| !!! | ATATAAAACCCATTGTTATT+GGG | + | chr4.1:15219805-15219824 | MS.gene09204:intron | 20.0% |
| !!! | ATATATAACCCATTGTTATT+GGG | + | chr4.1:15220412-15220431 | MS.gene09204:intron | 20.0% |
| !!! | ATCATAAGATTTGAAACATA+CGG | - | chr4.1:15221939-15221958 | None:intergenic | 20.0% |
| !!! | CTAAAACTTTTCTATGTAAT+GGG | - | chr4.1:15219139-15219158 | None:intergenic | 20.0% |
| !!! | TAAAACTTTTCTATGTAATG+GGG | - | chr4.1:15219138-15219157 | None:intergenic | 20.0% |
| !!! | TGTTTGTTTTTCGAATTTTT+AGG | + | chr4.1:15218313-15218332 | MS.gene09204:intron | 20.0% |
| !!! | TTTTGTGTTTTAAGCATAAT+TGG | + | chr4.1:15218394-15218413 | MS.gene09204:intron | 20.0% |
| ! | AACGTTAATTACTACTTTCT+AGG | + | chr4.1:15221813-15221832 | MS.gene09204:intron | 25.0% |
| ! | AAGCTAAAAACAAGTTTGTA+AGG | + | chr4.1:15218687-15218706 | MS.gene09204:intron | 25.0% |
| ! | ACCAAACAATCTAAGTAATA+AGG | - | chr4.1:15219652-15219671 | None:intergenic | 25.0% |
| ! | ATGTAATATTGAACTGGAAA+AGG | - | chr4.1:15221097-15221116 | None:intergenic | 25.0% |
| ! | ATGTAGTTTGAAAATTTGGA+AGG | + | chr4.1:15218921-15218940 | MS.gene09204:intron | 25.0% |
| ! | CAGAACCTTAAATCATAAAA+AGG | - | chr4.1:15220649-15220668 | None:intergenic | 25.0% |
| ! | CCAAACAATCTAAGTAATAA+GGG | - | chr4.1:15219651-15219670 | None:intergenic | 25.0% |
| ! | CTCTCTAAACAATTATTGTT+TGG | + | chr4.1:15221350-15221369 | MS.gene09204:intron | 25.0% |
| ! | GATATAAAACCCATTGTTAT+TGG | + | chr4.1:15219804-15219823 | MS.gene09204:intron | 25.0% |
| ! | GATATATAACCCATTGTTAT+TGG | + | chr4.1:15220411-15220430 | MS.gene09204:intron | 25.0% |
| ! | TAGTTTATAGATGAAAAAGG+CGG | + | chr4.1:15220544-15220563 | MS.gene09204:intron | 25.0% |
| ! | TGAACCTTAAATCATTACAT+GGG | - | chr4.1:15219512-15219531 | None:intergenic | 25.0% |
| ! | TTGAAAATTTGGAAGGAAAA+AGG | + | chr4.1:15218928-15218947 | MS.gene09204:intron | 25.0% |
| !! | AGTTCCCTTTTTATGATTAT+AGG | + | chr4.1:15219999-15220018 | MS.gene09204:intron | 25.0% |
| !! | ATGTTATTTGAAAGACAAAC+TGG | - | chr4.1:15219275-15219294 | None:intergenic | 25.0% |
| !! | ATTTAAGGTTCACTAAATGA+GGG | + | chr4.1:15219520-15219539 | MS.gene09204:intron | 25.0% |
| !! | TAGTCATTGTCAATTTTGTT+GGG | + | chr4.1:15218835-15218854 | MS.gene09204:intron | 25.0% |
| !! | TTTTATATCCCTGAATGTTA+CGG | - | chr4.1:15220797-15220816 | None:intergenic | 25.0% |
| !! | TTTTCCAGTTCAATATTACA+TGG | + | chr4.1:15221096-15221115 | MS.gene09204:intron | 25.0% |
| !! | TTTTCCATGTAATATTGAAC+TGG | - | chr4.1:15221103-15221122 | None:intergenic | 25.0% |
| !!! | GGTTTTCTCTATATTTTAAC+TGG | - | chr4.1:15219362-15219381 | None:intergenic | 25.0% |
| !!! | TGAGTTGATTTTATCTGAAA+AGG | + | chr4.1:15222063-15222082 | MS.gene09204:CDS | 25.0% |
| !!! | TGTGTTTTTTTTTGAAAGTG+TGG | + | chr4.1:15221982-15222001 | MS.gene09204:intron | 25.0% |
| AACTCCCATGTAATGATTTA+AGG | + | chr4.1:15219505-15219524 | MS.gene09204:intron | 30.0% | |
| AATGTACCTCGTTAAATTCA+GGG | + | chr4.1:15219972-15219991 | MS.gene09204:intron | 30.0% | |
| ACAATAGATGTAGTGAAACT+TGG | + | chr4.1:15219179-15219198 | MS.gene09204:intron | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | chr4.1:15220153-15220172 | None:intergenic | 30.0% | |
| ACCTCATTACTTAGATTGTT+TGG | + | chr4.1:15220149-15220168 | MS.gene09204:intron | 30.0% | |
| ATAAGGCACATGATATCAAA+CGG | + | chr4.1:15218809-15218828 | MS.gene09204:intron | 30.0% | |
| ATTACATGGAAAAGACGTAT+AGG | + | chr4.1:15221110-15221129 | MS.gene09204:intron | 30.0% | |
| ATTACTACTTTCTAGGTCAA+AGG | + | chr4.1:15221820-15221839 | MS.gene09204:intron | 30.0% | |
| CAACAAAATTGACAATGACT+AGG | - | chr4.1:15218836-15218855 | None:intergenic | 30.0% | |
| CAGATAAAATCAACTCAATG+TGG | - | chr4.1:15222060-15222079 | None:intergenic | 30.0% | |
| CCCTTATTACTTAGATTGTT+TGG | + | chr4.1:15219648-15219667 | MS.gene09204:intron | 30.0% | |
| CTTAAATCATAAAAAGGGAG+AGG | - | chr4.1:15220643-15220662 | None:intergenic | 30.0% | |
| GAAACTAGTGTCTAATAGAT+GGG | - | chr4.1:15219383-15219402 | None:intergenic | 30.0% | |
| GAACTTATGTATTTCTCTGA+TGG | + | chr4.1:15218650-15218669 | MS.gene09204:intron | 30.0% | |
| GGTTCACCTTAAAAAAATCA+TGG | - | chr4.1:15220622-15220641 | None:intergenic | 30.0% | |
| GTGAACCTTAAATCATTACA+TGG | - | chr4.1:15219513-15219532 | None:intergenic | 30.0% | |
| TCCTGATGTAAAAAGAAAAC+AGG | + | chr4.1:15221143-15221162 | MS.gene09204:intron | 30.0% | |
| TGTTTCATTTAGCATCTTAG+TGG | + | chr4.1:15219610-15219629 | MS.gene09204:intron | 30.0% | |
| TTAGGTAACACAAATTGAAC+TGG | - | chr4.1:15218587-15218606 | None:intergenic | 30.0% | |
| TTATATATCCCTGAAGGTTA+CGG | - | chr4.1:15220400-15220419 | None:intergenic | 30.0% | |
| TTGAAAAAAAAGCAGTGGTT+TGG | + | chr4.1:15220354-15220373 | MS.gene09204:intron | 30.0% | |
| TTTATATCCCTGAATGTTAC+GGG | - | chr4.1:15220796-15220815 | None:intergenic | 30.0% | |
| ! | ACCTGTTTTCTTTTTACATC+AGG | - | chr4.1:15221147-15221166 | None:intergenic | 30.0% |
| ! | AGATAATAGCCATGGTTTTT+GGG | + | chr4.1:15219474-15219493 | MS.gene09204:intron | 30.0% |
| ! | CATCTATTAGACACTAGTTT+CGG | + | chr4.1:15219382-15219401 | MS.gene09204:intron | 30.0% |
| ! | CTAGTCATTGTCAATTTTGT+TGG | + | chr4.1:15218834-15218853 | MS.gene09204:intron | 30.0% |
| ! | CTCTCCCTTTTTATGATTTA+AGG | + | chr4.1:15220641-15220660 | MS.gene09204:intron | 30.0% |
| ! | GATTTAAGGTTCACTAAATG+AGG | + | chr4.1:15219519-15219538 | MS.gene09204:intron | 30.0% |
| ! | GATTTTATCTGAAAAGGAAG+AGG | + | chr4.1:15222069-15222088 | MS.gene09204:CDS | 30.0% |
| ! | TAATTGTTTCGGCAAGATTT+TGG | + | chr4.1:15222146-15222165 | MS.gene09204:intron | 30.0% |
| ! | TGATATGTGTTGACATGTAT+TGG | + | chr4.1:15220950-15220969 | MS.gene09204:intron | 30.0% |
| ! | TTTTATATCCCTGAAGGTTA+CGG | - | chr4.1:15219793-15219812 | None:intergenic | 30.0% |
| ! | TTTTCATAGGGTTATCTATC+AGG | - | chr4.1:15219412-15219431 | None:intergenic | 30.0% |
| !! | TTGTTGTTTATGTTGTACTG+AGG | + | chr4.1:15219245-15219264 | MS.gene09204:intron | 30.0% |
| !!! | ATTCTGATATTTTTTCCAGC+CGG | + | chr4.1:15222188-15222207 | MS.gene09204:intron | 30.0% |
| AAAATCAACTCAATGTGGCA+AGG | - | chr4.1:15222055-15222074 | None:intergenic | 35.0% | |
| AAATCATTACATGGGAGTTG+AGG | - | chr4.1:15219504-15219523 | None:intergenic | 35.0% | |
| AAATTTGGAAGGAAAAAGGC+TGG | + | chr4.1:15218932-15218951 | MS.gene09204:intron | 35.0% | |
| AACCTGATTGAAAAAAGCAG+TGG | + | chr4.1:15219742-15219761 | MS.gene09204:intron | 35.0% | |
| AATTGTACTTGCAGAACACT+AGG | + | chr4.1:15221493-15221512 | MS.gene09204:intron | 35.0% | |
| AATTTGGAAGGAAAAAGGCT+GGG | + | chr4.1:15218933-15218952 | MS.gene09204:intron | 35.0% | |
| AGTAGCAGTAGCTTAATTGT+AGG | - | chr4.1:15221426-15221445 | None:intergenic | 35.0% | |
| ATAGGTTCACCCAATAACAA+TGG | - | chr4.1:15219817-15219836 | None:intergenic | 35.0% | |
| ATTGAAGGTTCAGTAAACGA+TGG | + | chr4.1:15220862-15220881 | MS.gene09204:intron | 35.0% | |
| ATTGTACTTGCAGAACACTA+GGG | + | chr4.1:15221494-15221513 | MS.gene09204:intron | 35.0% | |
| CATGGTAACATATGTTCACA+TGG | - | chr4.1:15218967-15218986 | None:intergenic | 35.0% | |
| CCTGATTGAAAAAAAAGCAG+TGG | + | chr4.1:15220349-15220368 | MS.gene09204:intron | 35.0% | |
| CGAAACTAGTGTCTAATAGA+TGG | - | chr4.1:15219384-15219403 | None:intergenic | 35.0% | |
| GAATGTACCTCGTTAAATTC+AGG | + | chr4.1:15219971-15219990 | MS.gene09204:intron | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | chr4.1:15219835-15219854 | None:intergenic | 35.0% | |
| TACTTTCTAGGTCAAAGGTT+TGG | + | chr4.1:15221825-15221844 | MS.gene09204:intron | 35.0% | |
| TAGGTTCACCCAATAACAAT+GGG | - | chr4.1:15219816-15219835 | None:intergenic | 35.0% | |
| TATATATCCCTGAAGGTTAC+GGG | - | chr4.1:15220399-15220418 | None:intergenic | 35.0% | |
| TCTTTGTGATACGTGATTGA+AGG | + | chr4.1:15220847-15220866 | MS.gene09204:intron | 35.0% | |
| TGAACCTGTCGTTAAAATCA+GGG | + | chr4.1:15219451-15219470 | MS.gene09204:intron | 35.0% | |
| TGATTTAGCCACCTTCTTAA+TGG | + | chr4.1:15221007-15221026 | MS.gene09204:intron | 35.0% | |
| TTACAGAAGTTGCTTACACT+TGG | - | chr4.1:15218369-15218388 | None:intergenic | 35.0% | |
| TTACCTTGAAATGAACTCTG+AGG | - | chr4.1:15218504-15218523 | None:intergenic | 35.0% | |
| TTTATAGATGAAAAAGGCGG+TGG | + | chr4.1:15220547-15220566 | MS.gene09204:intron | 35.0% | |
| TTTATATCCCTGAAGGTTAC+GGG | - | chr4.1:15219792-15219811 | None:intergenic | 35.0% | |
| TTTATCTGAAAAGGAAGAGG+CGG | + | chr4.1:15222072-15222091 | MS.gene09204:CDS | 35.0% | |
| ! | AATAGACACTCTAATGGACA+AGG | + | chr4.1:15221648-15221667 | MS.gene09204:CDS | 35.0% |
| ! | GAGATAATAGCCATGGTTTT+TGG | + | chr4.1:15219473-15219492 | MS.gene09204:intron | 35.0% |
| ! | TCCATTAGAGTGTCTATTCT+TGG | - | chr4.1:15221646-15221665 | None:intergenic | 35.0% |
| !! | AATGGGTTATATATCCCTGA+AGG | - | chr4.1:15220406-15220425 | None:intergenic | 35.0% |
| !! | AATGGGTTTTATATCCCTGA+AGG | - | chr4.1:15219799-15219818 | None:intergenic | 35.0% |
| !!! | CCACTGCTTTTTTTTCAATC+AGG | - | chr4.1:15220352-15220371 | None:intergenic | 35.0% |
| AAGCAACTAGGCCATTAAGA+AGG | - | chr4.1:15221021-15221040 | None:intergenic | 40.0% | |
| AATCAGGGAGATAATAGCCA+TGG | + | chr4.1:15219466-15219485 | MS.gene09204:intron | 40.0% | |
| ACAGAAACGTCTGAATGGAA+TGG | - | chr4.1:15221598-15221617 | None:intergenic | 40.0% | |
| ACGAATCACAAACAGAGACT+CGG | - | chr4.1:15219093-15219112 | None:intergenic | 40.0% | |
| ACTGAAGGTTCAGTAAACGA+TGG | + | chr4.1:15219858-15219877 | MS.gene09204:intron | 40.0% | |
| AGAAGTTGCTTACACTTGGT+AGG | - | chr4.1:15218365-15218384 | None:intergenic | 40.0% | |
| AGAGGTTCACCCAATAACAA+TGG | - | chr4.1:15220424-15220443 | None:intergenic | 40.0% | |
| ATATCACAGACATTTCCGAG+AGG | - | chr4.1:15221193-15221212 | None:intergenic | 40.0% | |
| ATCTCCCTGAGTTTAACAAG+AGG | - | chr4.1:15220594-15220613 | None:intergenic | 40.0% | |
| ATGAGGCAAATCAAGCAACT+AGG | - | chr4.1:15221033-15221052 | None:intergenic | 40.0% | |
| ATTTGGAAGGAAAAAGGCTG+GGG | + | chr4.1:15218934-15218953 | MS.gene09204:intron | 40.0% | |
| CAGGTTGTTGCATGACTATA+GGG | - | chr4.1:15220732-15220751 | None:intergenic | 40.0% | |
| CGACAGGTTCACAAAATAAC+AGG | - | chr4.1:15219442-15219461 | None:intergenic | 40.0% | |
| CTATCTCCCTGAATTTAACG+AGG | - | chr4.1:15219981-15220000 | None:intergenic | 40.0% | |
| GAAGTTGCTTACACTTGGTA+GGG | - | chr4.1:15218364-15218383 | None:intergenic | 40.0% | |
| GAGGTTCACCCAATAACAAT+GGG | - | chr4.1:15220423-15220442 | None:intergenic | 40.0% | |
| GATTGAAAAAAGCAGTGGTC+TGG | + | chr4.1:15219747-15219766 | MS.gene09204:intron | 40.0% | |
| GCATGTTCACATGTTACAAG+AGG | - | chr4.1:15218998-15219017 | None:intergenic | 40.0% | |
| GCCAAGAATAGACACTCTAA+TGG | + | chr4.1:15221642-15221661 | MS.gene09204:CDS | 40.0% | |
| GTATCACAAAGACAAGACAG+AGG | - | chr4.1:15220442-15220461 | None:intergenic | 40.0% | |
| GTGAACCTGTCGTTAAAATC+AGG | + | chr4.1:15219450-15219469 | MS.gene09204:intron | 40.0% | |
| TCTAAGTAATAAGGGTAGCC+AGG | - | chr4.1:15219643-15219662 | None:intergenic | 40.0% | |
| TCTCCCTGAGTTTAACAAGA+GGG | - | chr4.1:15220593-15220612 | None:intergenic | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | chr4.1:15219843-15219862 | MS.gene09204:intron | 40.0% | |
| TGACCTCAGAGTTCATTTCA+AGG | + | chr4.1:15218498-15218517 | MS.gene09204:CDS | 40.0% | |
| TTACACTTGGTAGGGTTATC+AGG | - | chr4.1:15218356-15218375 | None:intergenic | 40.0% | |
| ! | ACATACGGTTGATTCTTCCA+TGG | - | chr4.1:15221924-15221943 | None:intergenic | 40.0% |
| ! | CATACGGTTGATTCTTCCAT+GGG | - | chr4.1:15221923-15221942 | None:intergenic | 40.0% |
| ! | GAGGGTACATTTCGTACATA+TGG | + | chr4.1:15219538-15219557 | MS.gene09204:intron | 40.0% |
| ! | TCAGGTTGTTGCATGACTAT+AGG | - | chr4.1:15220733-15220752 | None:intergenic | 40.0% |
| ! | TCTAAGTAATGAGGTTAGCC+AGG | - | chr4.1:15220144-15220163 | None:intergenic | 40.0% |
| ! | TTACAAGAGGCATGTTCACA+TGG | - | chr4.1:15218985-15219004 | None:intergenic | 40.0% |
| ! | TTCCAAGTACCTTTTAGCCT+TGG | - | chr4.1:15221553-15221572 | None:intergenic | 40.0% |
| !! | AACAGGCAACTGCTTTTCAT+AGG | - | chr4.1:15219425-15219444 | None:intergenic | 40.0% |
| !! | ACAGGCAACTGCTTTTCATA+GGG | - | chr4.1:15219424-15219443 | None:intergenic | 40.0% |
| !! | ATAAACTTCGCTGACTTGAC+TGG | - | chr4.1:15221681-15221700 | None:intergenic | 40.0% |
| !! | ATCTCCCTGATTTTAACGAC+AGG | - | chr4.1:15219458-15219477 | None:intergenic | 40.0% |
| !! | GTGGTTTGTTGTCTTGTGAA+TGG | + | chr4.1:15220566-15220585 | MS.gene09204:intron | 40.0% |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | chr4.1:15219747-15219766 | None:intergenic | 40.0% |
| !!! | TACCTTTTAGCCTTGGTCAA+GGG | - | chr4.1:15221546-15221565 | None:intergenic | 40.0% |
| !!! | TTTTTTACATGCAGCCACCA+AGG | + | chr4.1:15218465-15218484 | MS.gene09204:intron | 40.0% |
| AGACGTTCTTGCACACAAAC+AGG | + | chr4.1:15221572-15221591 | MS.gene09204:CDS | 45.0% | |
| ATATCCCTGAATGTTACGGG+TGG | - | chr4.1:15220793-15220812 | None:intergenic | 45.0% | |
| CAACTAGGCCATTAAGAAGG+TGG | - | chr4.1:15221018-15221037 | None:intergenic | 45.0% | |
| CAAGTCAGCGAAGTTTATCC+TGG | + | chr4.1:15221683-15221702 | MS.gene09204:CDS | 45.0% | |
| CATCTTAGTGGCATAGTTCC+TGG | + | chr4.1:15219622-15219641 | MS.gene09204:intron | 45.0% | |
| CTGCATTCTTCAGCAAATCC+AGG | - | chr4.1:15221704-15221723 | None:intergenic | 45.0% | |
| GCTTCTGTGCTTGATTGACT+TGG | - | chr4.1:15221879-15221898 | None:intergenic | 45.0% | |
| GGACCCTCTTGTTAAACTCA+GGG | + | chr4.1:15220587-15220606 | MS.gene09204:intron | 45.0% | |
| GGCTAACTTAAACAACAGCG+AGG | - | chr4.1:15219072-15219091 | None:intergenic | 45.0% | |
| TCTATATCGAGCAGTCCTCT+CGG | + | chr4.1:15221175-15221194 | MS.gene09204:intron | 45.0% | |
| TGAGGTTCTCCCAAAAACCA+TGG | - | chr4.1:15219486-15219505 | None:intergenic | 45.0% | |
| TGGACCCTCTTGTTAAACTC+AGG | + | chr4.1:15220586-15220605 | MS.gene09204:intron | 45.0% | |
| ! | ACTCTAATGGACAAGGAAGG+TGG | + | chr4.1:15221655-15221674 | MS.gene09204:CDS | 45.0% |
| ! | AGAGTGTCTATTCTTGGCCT+GGG | - | chr4.1:15221640-15221659 | None:intergenic | 45.0% |
| ! | GACACTCTAATGGACAAGGA+AGG | + | chr4.1:15221652-15221671 | MS.gene09204:CDS | 45.0% |
| ! | TAGAGTGTCTATTCTTGGCC+TGG | - | chr4.1:15221641-15221660 | None:intergenic | 45.0% |
| ! | TGTTTCAAGTAGCCTCCTAG+TGG | + | chr4.1:15220111-15220130 | MS.gene09204:intron | 45.0% |
| !! | GACCAAGGCTAAAAGGTACT+TGG | + | chr4.1:15221548-15221567 | MS.gene09204:CDS | 45.0% |
| !! | TACGGGTGGACTGTTCATAT+AGG | - | chr4.1:15220382-15220401 | None:intergenic | 45.0% |
| !!! | GTACCTTTTAGCCTTGGTCA+AGG | - | chr4.1:15221547-15221566 | None:intergenic | 45.0% |
| !! | TAATTAATAATTGATATATT+TGG | + | chr4.1:15220313-15220332 | MS.gene09204:intron | 5.0% |
| AGACGTTTCTGTCGTGGTGT+TGG | + | chr4.1:15221606-15221625 | MS.gene09204:CDS | 50.0% | |
| ATATCCCTGAAGGTTACGGG+TGG | - | chr4.1:15219789-15219808 | None:intergenic | 50.0% | |
| CCACGACAGAAACGTCTGAA+TGG | - | chr4.1:15221603-15221622 | None:intergenic | 50.0% | |
| CCATTCAGACGTTTCTGTCG+TGG | + | chr4.1:15221600-15221619 | MS.gene09204:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | chr4.1:15221607-15221626 | MS.gene09204:CDS | 50.0% | |
| TAGCCAGGAACTATGCCACT+AGG | - | chr4.1:15219628-15219647 | None:intergenic | 50.0% | |
| TGCCCTTGACCAAGGCTAAA+AGG | + | chr4.1:15221541-15221560 | MS.gene09204:CDS | 50.0% | |
| ! | GAGTGTTTCAAGTAGCCTCC+TGG | + | chr4.1:15220108-15220127 | MS.gene09204:intron | 50.0% |
| ! | GGCGGTTCAGAAAGAGGTAT+TGG | + | chr4.1:15222090-15222109 | MS.gene09204:intron | 50.0% |
| ! | TGTTTCAAGTAGCCTCCTGG+TGG | + | chr4.1:15220213-15220232 | MS.gene09204:intron | 50.0% |
| !! | TACGGGTGGACTGCTCATAT+AGG | - | chr4.1:15219775-15219794 | None:intergenic | 50.0% |
| ACAGTCCACCCGTAACCTTC+AGG | + | chr4.1:15220388-15220407 | MS.gene09204:intron | 55.0% | |
| CAGGAAGTTGCCCTTGACCA+AGG | + | chr4.1:15221533-15221552 | MS.gene09204:CDS | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | chr4.1:15219782-15219801 | MS.gene09204:intron | 55.0% | |
| CCAGGAACTATGCCACTAGG+AGG | - | chr4.1:15220126-15220145 | None:intergenic | 55.0% | |
| CCCTGAATGTTACGGGTGGA+CGG | - | chr4.1:15220789-15220808 | None:intergenic | 55.0% | |
| CCGTCCACCCGTAACATTCA+GGG | + | chr4.1:15220786-15220805 | MS.gene09204:intron | 55.0% | |
| CCTCCTAGTGGCATAGTTCC+TGG | + | chr4.1:15220123-15220142 | MS.gene09204:intron | 55.0% | |
| CGCAGAACATACAGAGCCCA+TGG | + | chr4.1:15221904-15221923 | MS.gene09204:CDS | 55.0% | |
| GGAAGAGGCGGTTCAGAAAG+AGG | + | chr4.1:15222084-15222103 | MS.gene09204:CDS | 55.0% | |
| GGGAAACTGCCTTTGCCATC+AGG | + | chr4.1:15221514-15221533 | MS.gene09204:CDS | 55.0% | |
| GGGCAACTTCCTGATGGCAA+AGG | - | chr4.1:15221526-15221545 | None:intergenic | 55.0% | |
| GGTCAAGGGCAACTTCCTGA+TGG | - | chr4.1:15221532-15221551 | None:intergenic | 55.0% | |
| TACGGGTGGACGGCTCATAT+AGG | - | chr4.1:15220779-15220798 | None:intergenic | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | chr4.1:15221610-15221629 | MS.gene09204:CDS | 55.0% |
| GCAGTCCACCCGTAACCTTC+AGG | + | chr4.1:15219781-15219800 | MS.gene09204:intron | 60.0% | |
| GCCGTCCACCCGTAACATTC+AGG | + | chr4.1:15220785-15220804 | MS.gene09204:intron | 60.0% | |
| TAGCCAGGAACTACGCCACC+AGG | - | chr4.1:15220231-15220250 | None:intergenic | 60.0% | |
| CATGCAGCCACCAAGGCTCG+TGG | + | chr4.1:15218472-15218491 | MS.gene09204:intron | 65.0% | |
| CCAGGAACTACGCCACCAGG+AGG | - | chr4.1:15220228-15220247 | None:intergenic | 65.0% | |
| GAGGTCAGCACCACGAGCCT+TGG | - | chr4.1:15218485-15218504 | None:intergenic | 65.0% | |
| GTCAGCACCACGAGCCTTGG+TGG | - | chr4.1:15218482-15218501 | None:intergenic | 65.0% | |
| ! | CCTCCTGGTGGCGTAGTTCC+TGG | + | chr4.1:15220225-15220244 | MS.gene09204:intron | 65.0% |
| ! | TGGTGTTGGGAGGACAGCCC+AGG | + | chr4.1:15221620-15221639 | MS.gene09204:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 15218223 | 15222245 | 15218223 | ID=MS.gene09204 |
| chr4.1 | mRNA | 15218223 | 15222245 | 15218223 | ID=MS.gene09204.t1;Parent=MS.gene09204 |
| chr4.1 | exon | 15218223 | 15218225 | 15218223 | ID=MS.gene09204.t1.exon1;Parent=MS.gene09204.t1 |
| chr4.1 | CDS | 15218223 | 15218225 | 15218223 | ID=cds.MS.gene09204.t1;Parent=MS.gene09204.t1 |
| chr4.1 | exon | 15218335 | 15218371 | 15218335 | ID=MS.gene09204.t1.exon2;Parent=MS.gene09204.t1 |
| chr4.1 | CDS | 15218335 | 15218371 | 15218335 | ID=cds.MS.gene09204.t1;Parent=MS.gene09204.t1 |
| chr4.1 | exon | 15218479 | 15218519 | 15218479 | ID=MS.gene09204.t1.exon3;Parent=MS.gene09204.t1 |
| chr4.1 | CDS | 15218479 | 15218519 | 15218479 | ID=cds.MS.gene09204.t1;Parent=MS.gene09204.t1 |
| chr4.1 | exon | 15221507 | 15221737 | 15221507 | ID=MS.gene09204.t1.exon4;Parent=MS.gene09204.t1 |
| chr4.1 | CDS | 15221507 | 15221737 | 15221507 | ID=cds.MS.gene09204.t1;Parent=MS.gene09204.t1 |
| chr4.1 | exon | 15221835 | 15221937 | 15221835 | ID=MS.gene09204.t1.exon5;Parent=MS.gene09204.t1 |
| chr4.1 | CDS | 15221835 | 15221937 | 15221835 | ID=cds.MS.gene09204.t1;Parent=MS.gene09204.t1 |
| chr4.1 | exon | 15222038 | 15222105 | 15222038 | ID=MS.gene09204.t1.exon6;Parent=MS.gene09204.t1 |
| chr4.1 | CDS | 15222038 | 15222105 | 15222038 | ID=cds.MS.gene09204.t1;Parent=MS.gene09204.t1 |
| chr4.1 | exon | 15222207 | 15222245 | 15222207 | ID=MS.gene09204.t1.exon7;Parent=MS.gene09204.t1 |
| chr4.1 | CDS | 15222207 | 15222245 | 15222207 | ID=cds.MS.gene09204.t1;Parent=MS.gene09204.t1 |
| Gene Sequence |
| Protein sequence |
