Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066811.t1 | XP_003601798.1 | 92.3 | 183 | 9 | 2 | 1 | 179 | 1 | 182 | 1.00E-84 | 322.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066811.t1 | P51413 | 82.4 | 176 | 26 | 2 | 1 | 172 | 1 | 175 | 2.4e-74 | 279.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066811.t1 | G7JC06 | 92.3 | 183 | 9 | 2 | 1 | 179 | 1 | 182 | 7.3e-85 | 322.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene066811 | 0.82416 | 9.38E-54 | -1.69E-46 |
| MS.gene049361 | MS.gene066811 | 0.815297 | 9.94E-52 | -1.69E-46 |
| MS.gene049387 | MS.gene066811 | 0.850293 | 1.86E-60 | -1.69E-46 |
| MS.gene050134 | MS.gene066811 | 0.872409 | 3.25E-67 | -1.69E-46 |
| MS.gene050791 | MS.gene066811 | 0.830261 | 3.24E-55 | -1.69E-46 |
| MS.gene051925 | MS.gene066811 | 0.805297 | 1.43E-49 | -1.69E-46 |
| MS.gene051984 | MS.gene066811 | 0.817152 | 3.82E-52 | -1.69E-46 |
| MS.gene052664 | MS.gene066811 | 0.878765 | 2.16E-69 | -1.69E-46 |
| MS.gene052666 | MS.gene066811 | 0.843802 | 1.12E-58 | -1.69E-46 |
| MS.gene053224 | MS.gene066811 | 0.840986 | 6.25E-58 | -1.69E-46 |
| MS.gene054624 | MS.gene066811 | 0.802875 | 4.56E-49 | -1.69E-46 |
| MS.gene057272 | MS.gene066811 | 0.852834 | 3.56E-61 | -1.69E-46 |
| MS.gene057641 | MS.gene066811 | 0.850263 | 1.90E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene066811 | 0.877884 | 4.39E-69 | -1.69E-46 |
| MS.gene058994 | MS.gene066811 | 0.810239 | 1.27E-50 | -1.69E-46 |
| MS.gene059340 | MS.gene066811 | 0.842955 | 1.89E-58 | -1.69E-46 |
| MS.gene059878 | MS.gene066811 | 0.802872 | 4.56E-49 | -1.69E-46 |
| MS.gene059880 | MS.gene066811 | 0.808425 | 3.12E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene066811 | 0.851505 | 8.50E-61 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066811.t1 | MTR_3g085490 | 92.350 | 183 | 9 | 2 | 1 | 179 | 1 | 182 | 2.12e-122 | 343 |
| MS.gene066811.t1 | MTR_8g080460 | 91.954 | 174 | 9 | 2 | 1 | 170 | 1 | 173 | 2.77e-115 | 324 |
| MS.gene066811.t1 | MTR_3g085490 | 91.975 | 162 | 8 | 2 | 1 | 158 | 1 | 161 | 3.38e-107 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066811.t1 | AT1G67430 | 82.386 | 176 | 26 | 2 | 1 | 172 | 1 | 175 | 3.65e-103 | 294 |
| MS.gene066811.t1 | AT1G27400 | 83.237 | 173 | 24 | 2 | 1 | 169 | 1 | 172 | 1.35e-102 | 292 |
| MS.gene066811.t1 | AT1G67430 | 62.500 | 176 | 17 | 2 | 1 | 172 | 1 | 131 | 2.37e-66 | 199 |
Find 52 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGTTTGTTGCCAAC+TGG | 0.236433 | 3.4:+79808657 | None:intergenic |
| AACATCTTCTAAGTATCTTT+TGG | 0.263817 | 3.4:+79809327 | None:intergenic |
| AACAACGCAATACCTCTTTC+TGG | 0.294555 | 3.4:+79808761 | None:intergenic |
| AAGATACTTAGAAGATGTTT+TGG | 0.295183 | 3.4:-79809323 | MS.gene066811:CDS |
| GGTGGGATTGTCGGGCTCTT+TGG | 0.298164 | 3.4:+79810481 | None:intergenic |
| CTTCTTGTTTGTTGCCAACT+GGG | 0.310845 | 3.4:+79808658 | None:intergenic |
| GTTTGTTGCCAACTGGGTCT+CGG | 0.315567 | 3.4:+79808664 | None:intergenic |
| AACCCTAAGGTCAGCACCTC+TGG | 0.343663 | 3.4:+79810338 | None:intergenic |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | 3.4:-79809276 | MS.gene066811:CDS |
| AGGCCAGAGGTGCTGACCTT+AGG | 0.368932 | 3.4:-79810341 | MS.gene066811:CDS |
| TAGAGTGTCTGTTCTTAGCT+TGG | 0.376754 | 3.4:+79809245 | None:intergenic |
| AAGGTCAGCACCTCTGGCCT+TGG | 0.384955 | 3.4:+79810344 | None:intergenic |
| TTACATTTGGTGGGATTGTC+GGG | 0.385846 | 3.4:+79810473 | None:intergenic |
| GGCCAGAGGTGCTGACCTTA+GGG | 0.395315 | 3.4:-79810340 | MS.gene066811:intron |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.397264 | 3.4:-79809277 | MS.gene066811:CDS |
| AGAGTGTCTGTTCTTAGCTT+GGG | 0.404467 | 3.4:+79809246 | None:intergenic |
| GCTAAGAACAGACACTCTAA+TGG | 0.408761 | 3.4:-79809241 | MS.gene066811:CDS |
| TTTGTTGCCAACTGGGTCTC+GGG | 0.429555 | 3.4:+79808665 | None:intergenic |
| GGGAAACAGCGTTTGCCATC+AGG | 0.433818 | 3.4:-79809369 | MS.gene066811:CDS |
| ATTACATTTGGTGGGATTGT+CGG | 0.454131 | 3.4:+79810472 | None:intergenic |
| TCACTTCTAGGTGAAAGGTT+TGG | 0.454273 | 3.4:-79809030 | MS.gene066811:intron |
| CTAAGAACAGACACTCTAAT+GGG | 0.469410 | 3.4:-79809240 | MS.gene066811:CDS |
| GATGGCAAACGCTGTTTCCC+TGG | 0.472125 | 3.4:+79809372 | None:intergenic |
| ATGAATTTAGCTGACTTGAC+AGG | 0.481469 | 3.4:+79809205 | None:intergenic |
| TGAAAGGAATGGCCTGTTTG+TGG | 0.487121 | 3.4:+79809299 | None:intergenic |
| AACAAAGAAGACGTACCTAC+AGG | 0.490498 | 3.4:-79808960 | MS.gene066811:CDS |
| GAAAGGAATGGCCTGTTTGT+GGG | 0.496437 | 3.4:+79809300 | None:intergenic |
| CCTTTCAGACGTTTCTGTCG+TGG | 0.497413 | 3.4:-79809283 | MS.gene066811:CDS |
| ATTGTTCACTTCTAGGTGAA+AGG | 0.499870 | 3.4:-79809035 | MS.gene066811:intron |
| AGACGTACCTACAGGGCTCA+TGG | 0.520971 | 3.4:-79808952 | MS.gene066811:CDS |
| ACTCTAATGGGCAAGGACGC+TGG | 0.524787 | 3.4:-79809228 | MS.gene066811:CDS |
| AGAGAGGAATTACATTTGGT+GGG | 0.528638 | 3.4:+79810464 | None:intergenic |
| TCTCTACGTGTCTCATATCC+AGG | 0.529280 | 3.4:-79808998 | MS.gene066811:CDS |
| GAGAGAGGAATTACATTTGG+TGG | 0.535354 | 3.4:+79810463 | None:intergenic |
| GGTCAGGGGCAACTTCCTGA+TGG | 0.558655 | 3.4:+79809354 | None:intergenic |
| GGAAGAGGCTGTCCAGAAAG+AGG | 0.559016 | 3.4:-79808773 | MS.gene066811:intron |
| GATTCTTCCATGAGCCCTGT+AGG | 0.559080 | 3.4:+79808945 | None:intergenic |
| GATACTATCTGAGAAGGAAG+AGG | 0.578357 | 3.4:-79808788 | MS.gene066811:CDS |
| CCACGACAGAAACGTCTGAA+AGG | 0.578584 | 3.4:+79809283 | None:intergenic |
| TCTGTAATTGTCAGCAACCA+AGG | 0.600784 | 3.4:-79810361 | MS.gene066811:intron |
| TCTGTAGCCCGAGACCCAGT+TGG | 0.601405 | 3.4:-79808672 | MS.gene066811:intron |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.606753 | 3.4:-79809273 | MS.gene066811:CDS |
| CTCTTTGGAGTACTTCACCA+TGG | 0.611437 | 3.4:+79810496 | None:intergenic |
| ACAAAGAAGACGTACCTACA+GGG | 0.613276 | 3.4:-79808959 | MS.gene066811:CDS |
| CGAACTGATACTATCTGAGA+AGG | 0.615825 | 3.4:-79808794 | MS.gene066811:CDS |
| AACAGACACTCTAATGGGCA+AGG | 0.616551 | 3.4:-79809235 | MS.gene066811:CDS |
| ACAGAAACGTCTGAAAGGAA+TGG | 0.620803 | 3.4:+79809288 | None:intergenic |
| AAGTCTCAAGCTGTTCGAAG+TGG | 0.631486 | 3.4:-79808635 | MS.gene066811:CDS |
| AGTATCAGTTCGATGTGGCA+AGG | 0.635093 | 3.4:+79808805 | None:intergenic |
| TTGTCAGCAACCAAGGCCAG+AGG | 0.675210 | 3.4:-79810354 | MS.gene066811:intron |
| GTGGCAAGGAGATGACATGT+AGG | 0.691037 | 3.4:+79808819 | None:intergenic |
| CAGATAGTATCAGTTCGATG+TGG | 0.705561 | 3.4:+79808800 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAATACATATGAA+GGG | + | chr3.4:79809484-79809503 | None:intergenic | 10.0% |
| !! | TTAAAAATAAATACATATGA+AGG | + | chr3.4:79809485-79809504 | None:intergenic | 10.0% |
| !!! | AATTAACTTTTTTATCCAAA+AGG | + | chr3.4:79809212-79809231 | None:intergenic | 15.0% |
| !!! | GGTGTTTTTTTTTTTTTTTT+TGG | - | chr3.4:79810271-79810290 | MS.gene066811:intron | 15.0% |
| !! | GATTAATTTAACCTAATTTG+TGG | - | chr3.4:79808726-79808745 | MS.gene066811:intron | 20.0% |
| !! | TATTATTCATAATCTTGTCA+AGG | - | chr3.4:79808995-79809014 | MS.gene066811:CDS | 20.0% |
| ! | ACAAAATGCAATTTCTCTAT+AGG | + | chr3.4:79809157-79809176 | None:intergenic | 25.0% |
| ! | ATTAGTTGAAAATGGTCATT+TGG | - | chr3.4:79809444-79809463 | MS.gene066811:intron | 25.0% |
| ! | GCATTCTTATACTTATATAC+TGG | - | chr3.4:79810247-79810266 | MS.gene066811:intron | 25.0% |
| ! | TAAGAACAAAAAACAACAAC+AGG | + | chr3.4:79809676-79809695 | None:intergenic | 25.0% |
| ! | TTCTTATACTTATATACTGG+CGG | - | chr3.4:79810250-79810269 | MS.gene066811:intron | 25.0% |
| !! | AACATCTTCTAAGTATCTTT+TGG | + | chr3.4:79809792-79809811 | None:intergenic | 25.0% |
| !! | AAGATACTTAGAAGATGTTT+TGG | - | chr3.4:79809793-79809812 | MS.gene066811:intron | 25.0% |
| !! | ATCAGTAGATTAGTTGAAAA+TGG | - | chr3.4:79809436-79809455 | MS.gene066811:intron | 25.0% |
| !!! | ACTTTTTTATCCAAAAGGTA+AGG | + | chr3.4:79809207-79809226 | None:intergenic | 25.0% |
| AAACATAAGCCAATCCAAAA+AGG | + | chr3.4:79808946-79808965 | None:intergenic | 30.0% | |
| AACATAAGCCAATCCAAAAA+GGG | + | chr3.4:79808945-79808964 | None:intergenic | 30.0% | |
| AAGTCATAAGTTCTCACTAA+CGG | + | chr3.4:79809057-79809076 | None:intergenic | 30.0% | |
| ACAGATCAAAACCACAAATT+AGG | + | chr3.4:79808740-79808759 | None:intergenic | 30.0% | |
| AGTGGAGATGAAAATTCAAA+AGG | + | chr3.4:79810387-79810406 | None:intergenic | 30.0% | |
| CAATTTCTCTATAGGACATA+GGG | + | chr3.4:79809149-79809168 | None:intergenic | 30.0% | |
| GTAGAGATAGATCATGATAT+AGG | - | chr3.4:79808844-79808863 | MS.gene066811:intron | 30.0% | |
| TAAGCACTAATGAGAATCTT+TGG | + | chr3.4:79809415-79809434 | None:intergenic | 30.0% | |
| TAGCTGATCTAGTGAATTTA+CGG | - | chr3.4:79808918-79808937 | MS.gene066811:intron | 30.0% | |
| TATTCTTATTCGTGTTTGGA+TGG | - | chr3.4:79810210-79810229 | MS.gene066811:intron | 30.0% | |
| TTGTTTGATTGTTCACTTCT+AGG | - | chr3.4:79810074-79810093 | MS.gene066811:intron | 30.0% | |
| ! | ATTTTCATCTCCACTCTAAA+AGG | - | chr3.4:79810392-79810411 | MS.gene066811:intron | 30.0% |
| !! | TTTTCATCTCCACTCTAAAA+GGG | - | chr3.4:79810393-79810412 | MS.gene066811:intron | 30.0% |
| !!! | TTCTAAGTATCTTTTGGCTT+TGG | + | chr3.4:79809786-79809805 | None:intergenic | 30.0% |
| AGAGAGGAATTACATTTGGT+GGG | + | chr3.4:79808655-79808674 | None:intergenic | 35.0% | |
| AGCTGATCTAGTGAATTTAC+GGG | - | chr3.4:79808919-79808938 | MS.gene066811:intron | 35.0% | |
| ATACATATGAAGGGCAAGTT+TGG | + | chr3.4:79809475-79809494 | None:intergenic | 35.0% | |
| ATCGAGAGAGGAATTACATT+TGG | + | chr3.4:79808659-79808678 | None:intergenic | 35.0% | |
| ATGAAAGAAGAAATCGAGAG+AGG | + | chr3.4:79808671-79808690 | None:intergenic | 35.0% | |
| ATTGTTCACTTCTAGGTGAA+AGG | - | chr3.4:79810081-79810100 | MS.gene066811:intron | 35.0% | |
| CTAAGAACAGACACTCTAAT+GGG | - | chr3.4:79809876-79809895 | MS.gene066811:intron | 35.0% | |
| GCAATTTCTCTATAGGACAT+AGG | + | chr3.4:79809150-79809169 | None:intergenic | 35.0% | |
| GCACTATTCTTATTCGTGTT+TGG | - | chr3.4:79810206-79810225 | MS.gene066811:intron | 35.0% | |
| TACCTATGAAATGAACCCTA+AGG | + | chr3.4:79808794-79808813 | None:intergenic | 35.0% | |
| TATAGGACATAGGGTTCATT+TGG | + | chr3.4:79809140-79809159 | None:intergenic | 35.0% | |
| TGGAAGAATCAATCGTATGT+TGG | - | chr3.4:79810184-79810203 | MS.gene066811:intron | 35.0% | |
| TTATTTCCCTATGCTCTCAA+AGG | + | chr3.4:79809346-79809365 | None:intergenic | 35.0% | |
| ! | AACTATCCTTTGAGAGCATA+GGG | - | chr3.4:79809337-79809356 | MS.gene066811:CDS | 35.0% |
| ! | ATTACATTTGGTGGGATTGT+CGG | + | chr3.4:79808647-79808666 | None:intergenic | 35.0% |
| ! | GAGAATCTTTGGAAGACATA+TGG | + | chr3.4:79809404-79809423 | None:intergenic | 35.0% |
| ! | TTATAACCTGCCTTACCTTT+TGG | - | chr3.4:79809194-79809213 | MS.gene066811:CDS | 35.0% |
| ! | TTTTATCCAAAAGGTAAGGC+AGG | + | chr3.4:79809203-79809222 | None:intergenic | 35.0% |
| !! | ATGAATTTAGCTGACTTGAC+AGG | + | chr3.4:79809914-79809933 | None:intergenic | 35.0% |
| !! | GATACAATACCCTTTTAGAG+TGG | + | chr3.4:79810405-79810424 | None:intergenic | 35.0% |
| !! | TCAAATTTGGTGGACTAGTT+TGG | - | chr3.4:79809630-79809649 | MS.gene066811:intron | 35.0% |
| AACAAAGAAGACGTACCTAC+AGG | - | chr3.4:79810156-79810175 | MS.gene066811:intron | 40.0% | |
| AACAACGCAATACCTCTTTC+TGG | + | chr3.4:79810358-79810377 | None:intergenic | 40.0% | |
| ACAAAGAAGACGTACCTACA+GGG | - | chr3.4:79810157-79810176 | MS.gene066811:intron | 40.0% | |
| ACAGAAACGTCTGAAAGGAA+TGG | + | chr3.4:79809831-79809850 | None:intergenic | 40.0% | |
| ACCATCATGGCAAATCAAGT+GGG | + | chr3.4:79809550-79809569 | None:intergenic | 40.0% | |
| CAGATAGTATCAGTTCGATG+TGG | + | chr3.4:79810319-79810338 | None:intergenic | 40.0% | |
| CGAACTGATACTATCTGAGA+AGG | - | chr3.4:79810322-79810341 | MS.gene066811:intron | 40.0% | |
| GACCTTAGGGTTCATTTCAT+AGG | - | chr3.4:79808789-79808808 | MS.gene066811:CDS | 40.0% | |
| GAGAGAGGAATTACATTTGG+TGG | + | chr3.4:79808656-79808675 | None:intergenic | 40.0% | |
| GATACTATCTGAGAAGGAAG+AGG | - | chr3.4:79810328-79810347 | MS.gene066811:intron | 40.0% | |
| GCTAAGAACAGACACTCTAA+TGG | - | chr3.4:79809875-79809894 | MS.gene066811:intron | 40.0% | |
| TCACTTCTAGGTGAAAGGTT+TGG | - | chr3.4:79810086-79810105 | MS.gene066811:intron | 40.0% | |
| TCCACCAAATTTGACACCAA+GGG | + | chr3.4:79809624-79809643 | None:intergenic | 40.0% | |
| TCTGTAATTGTCAGCAACCA+AGG | - | chr3.4:79808755-79808774 | MS.gene066811:intron | 40.0% | |
| TGCAGTTTGATGCGTTTAAC+TGG | - | chr3.4:79810031-79810050 | MS.gene066811:intron | 40.0% | |
| ! | AGAGTGTCTGTTCTTAGCTT+GGG | + | chr3.4:79809873-79809892 | None:intergenic | 40.0% |
| ! | ATTTTACTGTGCAGAACACC+AGG | - | chr3.4:79809726-79809745 | MS.gene066811:intron | 40.0% |
| ! | CTTCTTGTTTGTTGCCAACT+GGG | + | chr3.4:79810461-79810480 | None:intergenic | 40.0% |
| ! | GAACTATCCTTTGAGAGCAT+AGG | - | chr3.4:79809336-79809355 | MS.gene066811:CDS | 40.0% |
| ! | GGCAAATCAAGTGGGTTTAA+AGG | + | chr3.4:79809542-79809561 | None:intergenic | 40.0% |
| ! | TAGAGTGTCTGTTCTTAGCT+TGG | + | chr3.4:79809874-79809893 | None:intergenic | 40.0% |
| ! | TCTTCTTGTTTGTTGCCAAC+TGG | + | chr3.4:79810462-79810481 | None:intergenic | 40.0% |
| ! | TTACATTTGGTGGGATTGTC+GGG | + | chr3.4:79808646-79808665 | None:intergenic | 40.0% |
| ! | TTTTACTGTGCAGAACACCA+GGG | - | chr3.4:79809727-79809746 | MS.gene066811:intron | 40.0% |
| !! | GTTTTTGAGCTTGATTGACC+TGG | + | chr3.4:79810139-79810158 | None:intergenic | 40.0% |
| !! | TTTCCCCTTGGTGTCAAATT+TGG | - | chr3.4:79809617-79809636 | MS.gene066811:intron | 40.0% |
| !!! | AGTATCTTTTGGCTTTGGTC+AGG | + | chr3.4:79809781-79809800 | None:intergenic | 40.0% |
| !!! | GTATCTTTTGGCTTTGGTCA+GGG | + | chr3.4:79809780-79809799 | None:intergenic | 40.0% |
| !!! | TATCTTTTGGCTTTGGTCAG+GGG | + | chr3.4:79809779-79809798 | None:intergenic | 40.0% |
| AACAAACCTGAGACCTTTGG+AGG | + | chr3.4:79809599-79809618 | None:intergenic | 45.0% | |
| AAGTCTCAAGCTGTTCGAAG+TGG | - | chr3.4:79810481-79810500 | MS.gene066811:CDS | 45.0% | |
| AGTATCAGTTCGATGTGGCA+AGG | + | chr3.4:79810314-79810333 | None:intergenic | 45.0% | |
| CACCATCATGGCAAATCAAG+TGG | + | chr3.4:79809551-79809570 | None:intergenic | 45.0% | |
| CCACCAAATTTGACACCAAG+GGG | + | chr3.4:79809623-79809642 | None:intergenic | 45.0% | |
| GAAAGGAATGGCCTGTTTGT+GGG | + | chr3.4:79809819-79809838 | None:intergenic | 45.0% | |
| GATCAGCTATTCTGACAGCT+CGG | + | chr3.4:79808907-79808926 | None:intergenic | 45.0% | |
| GGAAACAAACCTGAGACCTT+TGG | + | chr3.4:79809602-79809621 | None:intergenic | 45.0% | |
| GTCCACCAAATTTGACACCA+AGG | + | chr3.4:79809625-79809644 | None:intergenic | 45.0% | |
| TCTCTACGTGTCTCATATCC+AGG | - | chr3.4:79810118-79810137 | MS.gene066811:intron | 45.0% | |
| TGAAAGGAATGGCCTGTTTG+TGG | + | chr3.4:79809820-79809839 | None:intergenic | 45.0% | |
| ! | AACAGACACTCTAATGGGCA+AGG | - | chr3.4:79809881-79809900 | MS.gene066811:intron | 45.0% |
| ! | GTGAATTTACGGGCCCTTTT+TGG | - | chr3.4:79808929-79808948 | MS.gene066811:intron | 45.0% |
| ! | TTTACGGGCCCTTTTTGGAT+TGG | - | chr3.4:79808934-79808953 | MS.gene066811:intron | 45.0% |
| !! | ACCCACTTGATTTGCCATGA+TGG | - | chr3.4:79809546-79809565 | MS.gene066811:intron | 45.0% |
| !! | TGCCATGATGGTGTTGACTT+GGG | - | chr3.4:79809558-79809577 | MS.gene066811:intron | 45.0% |
| !! | TTGCCATGATGGTGTTGACT+TGG | - | chr3.4:79809557-79809576 | MS.gene066811:intron | 45.0% |
| !!! | AGATGTTTTGGCCCACAAAC+AGG | - | chr3.4:79809805-79809824 | MS.gene066811:intron | 45.0% |
| AGACGTTTCTGTCGTGGTGT+TGG | - | chr3.4:79809839-79809858 | MS.gene066811:intron | 50.0% | |
| CCACGACAGAAACGTCTGAA+AGG | + | chr3.4:79809836-79809855 | None:intergenic | 50.0% | |
| CCTTTCAGACGTTTCTGTCG+TGG | - | chr3.4:79809833-79809852 | MS.gene066811:intron | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | - | chr3.4:79809840-79809859 | MS.gene066811:intron | 50.0% | |
| GATTCTTCCATGAGCCCTGT+AGG | + | chr3.4:79810174-79810193 | None:intergenic | 50.0% | |
| GTGGCAAGGAGATGACATGT+AGG | + | chr3.4:79810300-79810319 | None:intergenic | 50.0% | |
| TTTGTTGCCAACTGGGTCTC+GGG | + | chr3.4:79810454-79810473 | None:intergenic | 50.0% | |
| ! | GTCTCAGGTTTGTTTCCCCT+TGG | - | chr3.4:79809605-79809624 | MS.gene066811:intron | 50.0% |
| ! | GTTTGTTGCCAACTGGGTCT+CGG | + | chr3.4:79810455-79810474 | None:intergenic | 50.0% |
| !! | CCCCTTGGTGTCAAATTTGG+TGG | - | chr3.4:79809620-79809639 | MS.gene066811:intron | 50.0% |
| !! | GCCATGATGGTGTTGACTTG+GGG | - | chr3.4:79809559-79809578 | MS.gene066811:intron | 50.0% |
| AACCCTAAGGTCAGCACCTC+TGG | + | chr3.4:79808781-79808800 | None:intergenic | 55.0% | |
| AGACGTACCTACAGGGCTCA+TGG | - | chr3.4:79810164-79810183 | MS.gene066811:intron | 55.0% | |
| AGTGCTCCTCCAAAGGTCTC+AGG | - | chr3.4:79809590-79809609 | MS.gene066811:intron | 55.0% | |
| GCCCCAAGTCAACACCATCA+TGG | + | chr3.4:79809563-79809582 | None:intergenic | 55.0% | |
| GGAAGAGGCTGTCCAGAAAG+AGG | - | chr3.4:79810343-79810362 | MS.gene066811:CDS | 55.0% | |
| GGGAAACAGCGTTTGCCATC+AGG | - | chr3.4:79809747-79809766 | MS.gene066811:intron | 55.0% | |
| TTGTCAGCAACCAAGGCCAG+AGG | - | chr3.4:79808762-79808781 | MS.gene066811:intron | 55.0% | |
| ! | ACTCTAATGGGCAAGGACGC+TGG | - | chr3.4:79809888-79809907 | MS.gene066811:intron | 55.0% |
| ! | GATGGCAAACGCTGTTTCCC+TGG | + | chr3.4:79809747-79809766 | None:intergenic | 55.0% |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | - | chr3.4:79809843-79809862 | MS.gene066811:intron | 55.0% |
| !! | ATGGTGTTGACTTGGGGCCT+TGG | - | chr3.4:79809565-79809584 | MS.gene066811:intron | 55.0% |
| !! | CTTGGAGAGTGCTCCTCCAA+AGG | - | chr3.4:79809583-79809602 | MS.gene066811:intron | 55.0% |
| !! | CTTTGGAGGAGCACTCTCCA+AGG | + | chr3.4:79809585-79809604 | None:intergenic | 55.0% |
| AAGGTCAGCACCTCTGGCCT+TGG | + | chr3.4:79808775-79808794 | None:intergenic | 60.0% | |
| GGTCAGGGGCAACTTCCTGA+TGG | + | chr3.4:79809765-79809784 | None:intergenic | 60.0% | |
| GGTGGGATTGTCGGGCTCTT+TGG | + | chr3.4:79808638-79808657 | None:intergenic | 60.0% | |
| TCTGTAGCCCGAGACCCAGT+TGG | - | chr3.4:79810444-79810463 | MS.gene066811:intron | 60.0% | |
| !! | AGGCCAGAGGTGCTGACCTT+AGG | - | chr3.4:79808775-79808794 | MS.gene066811:CDS | 60.0% |
| !! | GGCCAGAGGTGCTGACCTTA+GGG | - | chr3.4:79808776-79808795 | MS.gene066811:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 79808622 | 79810516 | 79808622 | ID=MS.gene066811 |
| chr3.4 | mRNA | 79808622 | 79810516 | 79808622 | ID=MS.gene066811.t1;Parent=MS.gene066811 |
| chr3.4 | exon | 79810477 | 79810516 | 79810477 | ID=MS.gene066811.t1.exon1;Parent=MS.gene066811.t1 |
| chr3.4 | CDS | 79810477 | 79810516 | 79810477 | ID=cds.MS.gene066811.t1;Parent=MS.gene066811.t1 |
| chr3.4 | exon | 79810341 | 79810369 | 79810341 | ID=MS.gene066811.t1.exon2;Parent=MS.gene066811.t1 |
| chr3.4 | CDS | 79810341 | 79810369 | 79810341 | ID=cds.MS.gene066811.t1;Parent=MS.gene066811.t1 |
| chr3.4 | exon | 79809164 | 79809398 | 79809164 | ID=MS.gene066811.t1.exon3;Parent=MS.gene066811.t1 |
| chr3.4 | CDS | 79809164 | 79809398 | 79809164 | ID=cds.MS.gene066811.t1;Parent=MS.gene066811.t1 |
| chr3.4 | exon | 79808941 | 79809042 | 79808941 | ID=MS.gene066811.t1.exon4;Parent=MS.gene066811.t1 |
| chr3.4 | CDS | 79808941 | 79809042 | 79808941 | ID=cds.MS.gene066811.t1;Parent=MS.gene066811.t1 |
| chr3.4 | exon | 79808774 | 79808841 | 79808774 | ID=MS.gene066811.t1.exon5;Parent=MS.gene066811.t1 |
| chr3.4 | CDS | 79808774 | 79808841 | 79808774 | ID=cds.MS.gene066811.t1;Parent=MS.gene066811.t1 |
| chr3.4 | exon | 79808622 | 79808687 | 79808622 | ID=MS.gene066811.t1.exon6;Parent=MS.gene066811.t1 |
| chr3.4 | CDS | 79808622 | 79808687 | 79808622 | ID=cds.MS.gene066811.t1;Parent=MS.gene066811.t1 |
| Gene Sequence |
| Protein sequence |
