Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09038.t1 | XP_013446562.1 | 98.8 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 7.80E-90 | 339.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09038.t1 | Q93VI3 | 88.4 | 172 | 20 | 0 | 1 | 172 | 1 | 172 | 1.3e-82 | 307.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09038.t1 | I3SHA1 | 98.8 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 5.6e-90 | 339.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene09038 | 0.857213 | 1.90E-62 | -1.69E-46 |
| MS.gene049387 | MS.gene09038 | 0.80792 | 3.99E-50 | -1.69E-46 |
| MS.gene050134 | MS.gene09038 | 0.864485 | 1.18E-64 | -1.69E-46 |
| MS.gene051925 | MS.gene09038 | 0.917797 | 3.43E-86 | -1.69E-46 |
| MS.gene051927 | MS.gene09038 | 0.885005 | 1.18E-71 | -1.69E-46 |
| MS.gene052664 | MS.gene09038 | 0.837352 | 5.47E-57 | -1.69E-46 |
| MS.gene052666 | MS.gene09038 | 0.908278 | 2.04E-81 | -1.69E-46 |
| MS.gene053224 | MS.gene09038 | 0.840206 | 1.00E-57 | -1.69E-46 |
| MS.gene057272 | MS.gene09038 | 0.855345 | 6.71E-62 | -1.69E-46 |
| MS.gene057321 | MS.gene09038 | 0.808623 | 2.83E-50 | -1.69E-46 |
| MS.gene057641 | MS.gene09038 | 0.842233 | 2.93E-58 | -1.69E-46 |
| MS.gene057643 | MS.gene09038 | 0.845932 | 2.98E-59 | -1.69E-46 |
| MS.gene059340 | MS.gene09038 | 0.834687 | 2.59E-56 | -1.69E-46 |
| MS.gene060432 | MS.gene09038 | 0.815595 | 8.53E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene09038 | 0.852104 | 5.74E-61 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09038.t1 | MTR_8g080460 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 2.00e-128 | 357 |
| MS.gene09038.t1 | MTR_3g085490 | 95.954 | 173 | 7 | 0 | 1 | 173 | 1 | 173 | 2.08e-126 | 352 |
| MS.gene09038.t1 | MTR_3g085490 | 95.266 | 169 | 8 | 0 | 1 | 169 | 1 | 169 | 8.65e-120 | 335 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09038.t1 | AT1G27400 | 87.861 | 173 | 21 | 0 | 1 | 173 | 1 | 173 | 1.59e-114 | 322 |
| MS.gene09038.t1 | AT1G67430 | 87.283 | 173 | 22 | 0 | 1 | 173 | 1 | 173 | 2.14e-114 | 322 |
| MS.gene09038.t1 | AT1G67430 | 64.162 | 173 | 18 | 1 | 1 | 173 | 1 | 129 | 2.16e-71 | 212 |
Find 50 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGAGTGTCTATTCT+TGG | 0.210303 | 4.2:-14527432 | None:intergenic |
| TCTTCTTGCTTGCTGCCAAC+TGG | 0.224595 | 4.2:-14528003 | None:intergenic |
| TTACACTTGGTAGGGTTATC+AGG | 0.253880 | 4.2:-14524149 | None:intergenic |
| TGCCCTTGACCAAGGCTAAA+AGG | 0.311470 | 4.2:+14527330 | MS.gene09038:CDS |
| TAGAGTGTCTATTCTTGGCC+TGG | 0.328430 | 4.2:-14527427 | None:intergenic |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | 4.2:+14527396 | MS.gene09038:CDS |
| TACTTTCTAGGTCAAAGGTT+TGG | 0.377018 | 4.2:+14527614 | MS.gene09038:intron |
| CTTCTTGCTTGCTGCCAACT+GGG | 0.392921 | 4.2:-14528002 | None:intergenic |
| CTTGCTGCCAACTGGGACTC+CGG | 0.394551 | 4.2:-14527995 | None:intergenic |
| GCTTCTGTGCTTGATTGACT+TGG | 0.407265 | 4.2:-14527665 | None:intergenic |
| AGAGTGTCTATTCTTGGCCT+GGG | 0.411697 | 4.2:-14527426 | None:intergenic |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.422500 | 4.2:+14527395 | MS.gene09038:CDS |
| GGGAAACTGCCTTTGCCATC+AGG | 0.434248 | 4.2:+14527303 | MS.gene09038:CDS |
| CAAGTCAGCGAAGTTTATCC+TGG | 0.440074 | 4.2:+14527472 | MS.gene09038:CDS |
| AGACGTTCTTGCACACAAAC+AGG | 0.445626 | 4.2:+14527361 | MS.gene09038:CDS |
| ATAAACTTCGCTGACTTGAC+TGG | 0.446611 | 4.2:-14527467 | None:intergenic |
| GAGGTCAGCACCACGAGCCT+TGG | 0.456110 | 4.2:-14524278 | None:intergenic |
| GTCAGCACCACGAGCCTTGG+TGG | 0.461811 | 4.2:-14524275 | None:intergenic |
| TGGTGTTGGGAGGACAGCCC+AGG | 0.463667 | 4.2:+14527409 | MS.gene09038:CDS |
| GCCAAGAATAGACACTCTAA+TGG | 0.473513 | 4.2:+14527431 | MS.gene09038:CDS |
| AATTGTACTTGCAGAACACT+AGG | 0.474152 | 4.2:+14527282 | MS.gene09038:intron |
| CCATTCAGACGTTTCTGTCG+TGG | 0.491424 | 4.2:+14527389 | MS.gene09038:CDS |
| TGACCTCAGAGTTCATTTCA+AGG | 0.493325 | 4.2:+14524294 | MS.gene09038:CDS |
| CCACGACAGAAACGTCTGAA+TGG | 0.493513 | 4.2:-14527389 | None:intergenic |
| ATTACTACTTTCTAGGTCAA+AGG | 0.496618 | 4.2:+14527609 | MS.gene09038:intron |
| GACCAAGGCTAAAAGGTACT+TGG | 0.501746 | 4.2:+14527337 | MS.gene09038:CDS |
| AGAAGTTGCTTACACTTGGT+AGG | 0.508381 | 4.2:-14524158 | None:intergenic |
| ACATACGGTTGATTCTTCCA+TGG | 0.528331 | 4.2:-14527710 | None:intergenic |
| CTGCATTCTTCAGCAAATCC+AGG | 0.531822 | 4.2:-14527490 | None:intergenic |
| GAAGTTGCTTACACTTGGTA+GGG | 0.534908 | 4.2:-14524157 | None:intergenic |
| GGAAGAGGCGGTTCAGAAAG+AGG | 0.535941 | 4.2:+14527872 | MS.gene09038:CDS |
| CATACGGTTGATTCTTCCAT+GGG | 0.548316 | 4.2:-14527709 | None:intergenic |
| CGCAGAACATACAGAGCCCA+TGG | 0.557011 | 4.2:+14527693 | MS.gene09038:CDS |
| GTTGGCAGCAAGCAAGAAGA+GGG | 0.565267 | 4.2:+14528006 | MS.gene09038:CDS |
| GGGCAACTTCCTGATGGCAA+AGG | 0.587242 | 4.2:-14527312 | None:intergenic |
| GGTCAAGGGCAACTTCCTGA+TGG | 0.590928 | 4.2:-14527318 | None:intergenic |
| AGTTGGCAGCAAGCAAGAAG+AGG | 0.597913 | 4.2:+14528005 | MS.gene09038:CDS |
| ATTGTACTTGCAGAACACTA+GGG | 0.598625 | 4.2:+14527283 | MS.gene09038:intron |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.609236 | 4.2:+14527399 | MS.gene09038:CDS |
| AAAATCAACTCAATGTGGCA+AGG | 0.612514 | 4.2:-14527840 | None:intergenic |
| TTTCCAGCCGGAGTCCCAGT+TGG | 0.613767 | 4.2:+14527988 | MS.gene09038:intron |
| TTTATCTGAAAAGGAAGAGG+CGG | 0.620263 | 4.2:+14527860 | MS.gene09038:CDS |
| ACAGAAACGTCTGAATGGAA+TGG | 0.621533 | 4.2:-14527384 | None:intergenic |
| CAGATAAAATCAACTCAATG+TGG | 0.623662 | 4.2:-14527845 | None:intergenic |
| CAGGAAGTTGCCCTTGACCA+AGG | 0.624452 | 4.2:+14527322 | MS.gene09038:CDS |
| CATGCAGCCACCAAGGCTCG+TGG | 0.636269 | 4.2:+14524268 | MS.gene09038:intron |
| GACACTCTAATGGACAAGGA+AGG | 0.649233 | 4.2:+14527441 | MS.gene09038:CDS |
| TTACCTTGAAATGAACTCTG+AGG | 0.651324 | 4.2:-14524297 | None:intergenic |
| ACTCTAATGGACAAGGAAGG+TGG | 0.651493 | 4.2:+14527444 | MS.gene09038:CDS |
| AATAGACACTCTAATGGACA+AGG | 0.667364 | 4.2:+14527437 | MS.gene09038:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATTAATAAAACATAAT+TGG | - | chr4.2:14527188-14527207 | None:intergenic | 10.0% |
| !! | ATCATTAATAAAACATAATT+GGG | - | chr4.2:14527187-14527206 | None:intergenic | 10.0% |
| !! | TATATTAATTGAAATGAATA+AGG | - | chr4.2:14525482-14525501 | None:intergenic | 10.0% |
| !! | TTCATAAAAAAATCATATAA+AGG | - | chr4.2:14527243-14527262 | None:intergenic | 10.0% |
| !!! | TGTTTTATTATTATAGATTA+TGG | + | chr4.2:14526293-14526312 | MS.gene09038:intron | 10.0% |
| !! | TATATAATCAAGTAATAATG+AGG | - | chr4.2:14526839-14526858 | None:intergenic | 15.0% |
| !! | TATTGCTTATTTAATTGTTT+CGG | + | chr4.2:14527923-14527942 | MS.gene09038:intron | 15.0% |
| !!! | ATATAAAACTCATTGTTATT+GGG | + | chr4.2:14526599-14526618 | MS.gene09038:intron | 15.0% |
| !!! | ATTTAGTTTATAGATGAAAA+AGG | + | chr4.2:14526331-14526350 | MS.gene09038:intron | 15.0% |
| !!! | CAACTTGTATTTTTAATTAA+AGG | + | chr4.2:14527076-14527095 | MS.gene09038:intron | 15.0% |
| !!! | TAATAACCATGATTTTTTTA+AGG | + | chr4.2:14526403-14526422 | MS.gene09038:intron | 15.0% |
| !! | AGAAATGTAGTTTGAAAATT+TGG | + | chr4.2:14524713-14524732 | MS.gene09038:intron | 20.0% |
| !! | AGAACCTTAAATCATAAAAA+GGG | - | chr4.2:14526438-14526457 | None:intergenic | 20.0% |
| !! | ATGAAGTTAATTGATATACT+TGG | + | chr4.2:14525504-14525523 | MS.gene09038:intron | 20.0% |
| !! | ATGATTATAGGTTTCATAAA+TGG | + | chr4.2:14525807-14525826 | MS.gene09038:intron | 20.0% |
| !! | GAAACCTATAATCATAAAAA+GGG | - | chr4.2:14525802-14525821 | None:intergenic | 20.0% |
| !! | GATATAAAACTCATTGTTAT+TGG | + | chr4.2:14526598-14526617 | MS.gene09038:intron | 20.0% |
| !! | TACAACAAAAAATGAGTATT+AGG | - | chr4.2:14524401-14524420 | None:intergenic | 20.0% |
| !! | TACTAATTATTGATCATTGA+TGG | + | chr4.2:14525378-14525397 | MS.gene09038:intron | 20.0% |
| !! | TACTTGATTATATAAGACAT+AGG | + | chr4.2:14526845-14526864 | MS.gene09038:intron | 20.0% |
| !! | TGAAACCTATAATCATAAAA+AGG | - | chr4.2:14525803-14525822 | None:intergenic | 20.0% |
| !!! | ACTAAAACTTTTCTATGTAA+TGG | - | chr4.2:14524936-14524955 | None:intergenic | 20.0% |
| !!! | ATATAAAACCCATTGTTATT+GGG | + | chr4.2:14525601-14525620 | MS.gene09038:intron | 20.0% |
| !!! | ATATATAACCCATTGTTATT+GGG | + | chr4.2:14526202-14526221 | MS.gene09038:intron | 20.0% |
| !!! | ATCATAAGATTTGAAACATA+CGG | - | chr4.2:14527728-14527747 | None:intergenic | 20.0% |
| !!! | CTAAAACTTTTCTATGTAAT+GGG | - | chr4.2:14524935-14524954 | None:intergenic | 20.0% |
| !!! | TAAAACTTTTCTATGTAATG+GGG | - | chr4.2:14524934-14524953 | None:intergenic | 20.0% |
| !!! | TGTTTGTTTTTCGAATTTTT+AGG | + | chr4.2:14524109-14524128 | MS.gene09038:intron | 20.0% |
| !!! | TTTTGTGTTTTAAGCATAAT+TGG | + | chr4.2:14524190-14524209 | MS.gene09038:intron | 20.0% |
| ! | AACGTTAATTACTACTTTCT+AGG | + | chr4.2:14527602-14527621 | MS.gene09038:intron | 25.0% |
| ! | AAGCTAAAAACAAGTTTGTA+AGG | + | chr4.2:14524483-14524502 | MS.gene09038:intron | 25.0% |
| ! | ACCAAACAATCTAAGTAATA+AGG | - | chr4.2:14525448-14525467 | None:intergenic | 25.0% |
| ! | ATGTAATATTGAACTGGAAA+AGG | - | chr4.2:14526886-14526905 | None:intergenic | 25.0% |
| ! | ATGTAGTTTGAAAATTTGGA+AGG | + | chr4.2:14524717-14524736 | MS.gene09038:intron | 25.0% |
| ! | CAGAACCTTAAATCATAAAA+AGG | - | chr4.2:14526439-14526458 | None:intergenic | 25.0% |
| ! | CCAAACAATCTAAGTAATAA+GGG | - | chr4.2:14525447-14525466 | None:intergenic | 25.0% |
| ! | CTCTCTAAACAATTATTGTT+TGG | + | chr4.2:14527139-14527158 | MS.gene09038:intron | 25.0% |
| ! | GATATAAAACCCATTGTTAT+TGG | + | chr4.2:14525600-14525619 | MS.gene09038:intron | 25.0% |
| ! | GATATATAACCCATTGTTAT+TGG | + | chr4.2:14526201-14526220 | MS.gene09038:intron | 25.0% |
| ! | TAGTTTATAGATGAAAAAGG+CGG | + | chr4.2:14526334-14526353 | MS.gene09038:intron | 25.0% |
| ! | TGAACCTTAAATCATTACAT+GGG | - | chr4.2:14525308-14525327 | None:intergenic | 25.0% |
| ! | TTGAAAATTTGGAAGGAAAA+AGG | + | chr4.2:14524724-14524743 | MS.gene09038:intron | 25.0% |
| !! | AGTTCCCTTTTTATGATTAT+AGG | + | chr4.2:14525795-14525814 | MS.gene09038:intron | 25.0% |
| !! | ATGTTATTTGAAAGACAAAC+TGG | - | chr4.2:14525071-14525090 | None:intergenic | 25.0% |
| !! | ATTTAAGGTTCACTAAATGA+GGG | + | chr4.2:14525316-14525335 | MS.gene09038:intron | 25.0% |
| !! | TAGTCATTGTCAATTTTGTT+GGG | + | chr4.2:14524631-14524650 | MS.gene09038:intron | 25.0% |
| !! | TTTTATATCCCTGAATGTTA+CGG | - | chr4.2:14526587-14526606 | None:intergenic | 25.0% |
| !! | TTTTCCAGTTCAATATTACA+TGG | + | chr4.2:14526885-14526904 | MS.gene09038:intron | 25.0% |
| !! | TTTTCCATGTAATATTGAAC+TGG | - | chr4.2:14526892-14526911 | None:intergenic | 25.0% |
| !!! | GGTTTTCTCTATATTTTAAC+TGG | - | chr4.2:14525158-14525177 | None:intergenic | 25.0% |
| !!! | TGAGTTGATTTTATCTGAAA+AGG | + | chr4.2:14527851-14527870 | MS.gene09038:CDS | 25.0% |
| !!! | TGTGTTTTTTTTTGAAAGTG+TGG | + | chr4.2:14527771-14527790 | MS.gene09038:intron | 25.0% |
| AACTCCCATGTAATGATTTA+AGG | + | chr4.2:14525301-14525320 | MS.gene09038:intron | 30.0% | |
| AATGTACCTCGTTAAATTCA+GGG | + | chr4.2:14525768-14525787 | MS.gene09038:intron | 30.0% | |
| ACAATAGATGTAGTGAAACT+TGG | + | chr4.2:14524975-14524994 | MS.gene09038:intron | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | chr4.2:14525943-14525962 | None:intergenic | 30.0% | |
| ACCTCATTACTTAGATTGTT+TGG | + | chr4.2:14525939-14525958 | MS.gene09038:intron | 30.0% | |
| ATAAGGCACATGATATCAAA+CGG | + | chr4.2:14524605-14524624 | MS.gene09038:intron | 30.0% | |
| ATTACATGGAAAAGACGTAT+AGG | + | chr4.2:14526899-14526918 | MS.gene09038:intron | 30.0% | |
| ATTACTACTTTCTAGGTCAA+AGG | + | chr4.2:14527609-14527628 | MS.gene09038:intron | 30.0% | |
| CAACAAAATTGACAATGACT+AGG | - | chr4.2:14524632-14524651 | None:intergenic | 30.0% | |
| CAGATAAAATCAACTCAATG+TGG | - | chr4.2:14527848-14527867 | None:intergenic | 30.0% | |
| CCCTTATTACTTAGATTGTT+TGG | + | chr4.2:14525444-14525463 | MS.gene09038:intron | 30.0% | |
| CTTAAATCATAAAAAGGGAG+AGG | - | chr4.2:14526433-14526452 | None:intergenic | 30.0% | |
| GAAACTAGTGTCTAATAGAT+GGG | - | chr4.2:14525179-14525198 | None:intergenic | 30.0% | |
| GAACTTATGTATTTCTCTGA+TGG | + | chr4.2:14524446-14524465 | MS.gene09038:intron | 30.0% | |
| GGTTCACCTTAAAAAAATCA+TGG | - | chr4.2:14526412-14526431 | None:intergenic | 30.0% | |
| GTGAACCTTAAATCATTACA+TGG | - | chr4.2:14525309-14525328 | None:intergenic | 30.0% | |
| TCCTGATGTAAAAAGAAAAC+AGG | + | chr4.2:14526932-14526951 | MS.gene09038:intron | 30.0% | |
| TGTTTCATTTAGCATCTTAG+TGG | + | chr4.2:14525406-14525425 | MS.gene09038:intron | 30.0% | |
| TTAGGTAACACAAATTGAAC+TGG | - | chr4.2:14524383-14524402 | None:intergenic | 30.0% | |
| TTATATATCCCTGAAGGTTA+CGG | - | chr4.2:14526190-14526209 | None:intergenic | 30.0% | |
| TTGAAAAAAAAGCAGTGGTT+TGG | + | chr4.2:14526144-14526163 | MS.gene09038:intron | 30.0% | |
| TTTATATCCCTGAATGTTAC+GGG | - | chr4.2:14526586-14526605 | None:intergenic | 30.0% | |
| ! | ACCTGTTTTCTTTTTACATC+AGG | - | chr4.2:14526936-14526955 | None:intergenic | 30.0% |
| ! | AGATAATAGCCATGGTTTTT+GGG | + | chr4.2:14525270-14525289 | MS.gene09038:intron | 30.0% |
| ! | CATCTATTAGACACTAGTTT+CGG | + | chr4.2:14525178-14525197 | MS.gene09038:intron | 30.0% |
| ! | CTAGTCATTGTCAATTTTGT+TGG | + | chr4.2:14524630-14524649 | MS.gene09038:intron | 30.0% |
| ! | CTCTCCCTTTTTATGATTTA+AGG | + | chr4.2:14526431-14526450 | MS.gene09038:intron | 30.0% |
| ! | GATTTAAGGTTCACTAAATG+AGG | + | chr4.2:14525315-14525334 | MS.gene09038:intron | 30.0% |
| ! | GATTTTATCTGAAAAGGAAG+AGG | + | chr4.2:14527857-14527876 | MS.gene09038:CDS | 30.0% |
| ! | TAATTGTTTCGGCAAGATTT+TGG | + | chr4.2:14527934-14527953 | MS.gene09038:intron | 30.0% |
| ! | TGATATGTGTTGACATGTAT+TGG | + | chr4.2:14526740-14526759 | MS.gene09038:intron | 30.0% |
| ! | TTTTATATCCCTGAAGGTTA+CGG | - | chr4.2:14525589-14525608 | None:intergenic | 30.0% |
| ! | TTTTCATAGGGTTATCTATC+AGG | - | chr4.2:14525208-14525227 | None:intergenic | 30.0% |
| !! | TTGTTGTTTATGTTGTACTG+AGG | + | chr4.2:14525041-14525060 | MS.gene09038:intron | 30.0% |
| !!! | ATTCTGATATTTTTTCCAGC+CGG | + | chr4.2:14527976-14527995 | MS.gene09038:intron | 30.0% |
| AAAATCAACTCAATGTGGCA+AGG | - | chr4.2:14527843-14527862 | None:intergenic | 35.0% | |
| AAATCATTACATGGGAGTTG+AGG | - | chr4.2:14525300-14525319 | None:intergenic | 35.0% | |
| AAATTTGGAAGGAAAAAGGC+TGG | + | chr4.2:14524728-14524747 | MS.gene09038:intron | 35.0% | |
| AACCTGATTGAAAAAAGCAG+TGG | + | chr4.2:14525538-14525557 | MS.gene09038:intron | 35.0% | |
| AATTGTACTTGCAGAACACT+AGG | + | chr4.2:14527282-14527301 | MS.gene09038:intron | 35.0% | |
| AATTTGGAAGGAAAAAGGCT+GGG | + | chr4.2:14524729-14524748 | MS.gene09038:intron | 35.0% | |
| AGTAGCAGTAGCTTAATTGT+AGG | - | chr4.2:14527215-14527234 | None:intergenic | 35.0% | |
| ATAGGTTCACCCAATAACAA+TGG | - | chr4.2:14525613-14525632 | None:intergenic | 35.0% | |
| ATTGAAGGTTCAGTAAACGA+TGG | + | chr4.2:14526652-14526671 | MS.gene09038:intron | 35.0% | |
| ATTGTACTTGCAGAACACTA+GGG | + | chr4.2:14527283-14527302 | MS.gene09038:intron | 35.0% | |
| CATGGTAACATATGTTCACA+TGG | - | chr4.2:14524763-14524782 | None:intergenic | 35.0% | |
| CCTGATTGAAAAAAAAGCAG+TGG | + | chr4.2:14526139-14526158 | MS.gene09038:intron | 35.0% | |
| CGAAACTAGTGTCTAATAGA+TGG | - | chr4.2:14525180-14525199 | None:intergenic | 35.0% | |
| GAATGTACCTCGTTAAATTC+AGG | + | chr4.2:14525767-14525786 | MS.gene09038:intron | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | chr4.2:14525631-14525650 | None:intergenic | 35.0% | |
| TACTTTCTAGGTCAAAGGTT+TGG | + | chr4.2:14527614-14527633 | MS.gene09038:intron | 35.0% | |
| TAGGTTCACCCAATAACAAT+GGG | - | chr4.2:14525612-14525631 | None:intergenic | 35.0% | |
| TATATATCCCTGAAGGTTAC+GGG | - | chr4.2:14526189-14526208 | None:intergenic | 35.0% | |
| TCTTTGTGATACGTGATTGA+AGG | + | chr4.2:14526637-14526656 | MS.gene09038:intron | 35.0% | |
| TGAACCTGTCGTTAAAATCA+GGG | + | chr4.2:14525247-14525266 | MS.gene09038:intron | 35.0% | |
| TGATTTAGCCACCTTCTTAA+TGG | + | chr4.2:14526796-14526815 | MS.gene09038:intron | 35.0% | |
| TTACAGAAGTTGCTTACACT+TGG | - | chr4.2:14524165-14524184 | None:intergenic | 35.0% | |
| TTACCTTGAAATGAACTCTG+AGG | - | chr4.2:14524300-14524319 | None:intergenic | 35.0% | |
| TTTATAGATGAAAAAGGCGG+TGG | + | chr4.2:14526337-14526356 | MS.gene09038:intron | 35.0% | |
| TTTATATCCCTGAAGGTTAC+GGG | - | chr4.2:14525588-14525607 | None:intergenic | 35.0% | |
| TTTATCTGAAAAGGAAGAGG+CGG | + | chr4.2:14527860-14527879 | MS.gene09038:CDS | 35.0% | |
| ! | AATAGACACTCTAATGGACA+AGG | + | chr4.2:14527437-14527456 | MS.gene09038:CDS | 35.0% |
| ! | GAGATAATAGCCATGGTTTT+TGG | + | chr4.2:14525269-14525288 | MS.gene09038:intron | 35.0% |
| ! | TCCATTAGAGTGTCTATTCT+TGG | - | chr4.2:14527435-14527454 | None:intergenic | 35.0% |
| !! | AATGGGTTATATATCCCTGA+AGG | - | chr4.2:14526196-14526215 | None:intergenic | 35.0% |
| !! | AATGGGTTTTATATCCCTGA+AGG | - | chr4.2:14525595-14525614 | None:intergenic | 35.0% |
| !!! | CCACTGCTTTTTTTTCAATC+AGG | - | chr4.2:14526142-14526161 | None:intergenic | 35.0% |
| AAGCAACTAGGCCATTAAGA+AGG | - | chr4.2:14526810-14526829 | None:intergenic | 40.0% | |
| AATCAGGGAGATAATAGCCA+TGG | + | chr4.2:14525262-14525281 | MS.gene09038:intron | 40.0% | |
| ACAGAAACGTCTGAATGGAA+TGG | - | chr4.2:14527387-14527406 | None:intergenic | 40.0% | |
| ACGAATCACAAACAGAGACT+CGG | - | chr4.2:14524889-14524908 | None:intergenic | 40.0% | |
| ACTGAAGGTTCAGTAAACGA+TGG | + | chr4.2:14525654-14525673 | MS.gene09038:intron | 40.0% | |
| AGAAGTTGCTTACACTTGGT+AGG | - | chr4.2:14524161-14524180 | None:intergenic | 40.0% | |
| AGAGGTTCACCCAATAACAA+TGG | - | chr4.2:14526214-14526233 | None:intergenic | 40.0% | |
| ATATCACAGACATTTCCGAG+AGG | - | chr4.2:14526982-14527001 | None:intergenic | 40.0% | |
| ATCTCCCTGAGTTTAACAAG+AGG | - | chr4.2:14526384-14526403 | None:intergenic | 40.0% | |
| ATGAGGCAAATCAAGCAACT+AGG | - | chr4.2:14526822-14526841 | None:intergenic | 40.0% | |
| ATTTGGAAGGAAAAAGGCTG+GGG | + | chr4.2:14524730-14524749 | MS.gene09038:intron | 40.0% | |
| CAGGTTGTTGCATGACTATA+GGG | - | chr4.2:14526522-14526541 | None:intergenic | 40.0% | |
| CGACAGGTTCACAAAATAAC+AGG | - | chr4.2:14525238-14525257 | None:intergenic | 40.0% | |
| CTATCTCCCTGAATTTAACG+AGG | - | chr4.2:14525777-14525796 | None:intergenic | 40.0% | |
| GAAGTTGCTTACACTTGGTA+GGG | - | chr4.2:14524160-14524179 | None:intergenic | 40.0% | |
| GAGGTTCACCCAATAACAAT+GGG | - | chr4.2:14526213-14526232 | None:intergenic | 40.0% | |
| GATTGAAAAAAGCAGTGGTC+TGG | + | chr4.2:14525543-14525562 | MS.gene09038:intron | 40.0% | |
| GCATGTTCACATGTTACAAG+AGG | - | chr4.2:14524794-14524813 | None:intergenic | 40.0% | |
| GCCAAGAATAGACACTCTAA+TGG | + | chr4.2:14527431-14527450 | MS.gene09038:CDS | 40.0% | |
| GTATCACAAAGACAAGACAG+AGG | - | chr4.2:14526232-14526251 | None:intergenic | 40.0% | |
| GTGAACCTGTCGTTAAAATC+AGG | + | chr4.2:14525246-14525265 | MS.gene09038:intron | 40.0% | |
| TCTAAGTAATAAGGGTAGCC+AGG | - | chr4.2:14525439-14525458 | None:intergenic | 40.0% | |
| TCTCCCTGAGTTTAACAAGA+GGG | - | chr4.2:14526383-14526402 | None:intergenic | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | chr4.2:14525639-14525658 | MS.gene09038:intron | 40.0% | |
| TGACCTCAGAGTTCATTTCA+AGG | + | chr4.2:14524294-14524313 | MS.gene09038:CDS | 40.0% | |
| TTACACTTGGTAGGGTTATC+AGG | - | chr4.2:14524152-14524171 | None:intergenic | 40.0% | |
| ! | ACATACGGTTGATTCTTCCA+TGG | - | chr4.2:14527713-14527732 | None:intergenic | 40.0% |
| ! | CATACGGTTGATTCTTCCAT+GGG | - | chr4.2:14527712-14527731 | None:intergenic | 40.0% |
| ! | GAGGGTACATTTCGTACATA+TGG | + | chr4.2:14525334-14525353 | MS.gene09038:intron | 40.0% |
| ! | TCAGGTTGTTGCATGACTAT+AGG | - | chr4.2:14526523-14526542 | None:intergenic | 40.0% |
| ! | TCTAAGTAATGAGGTTAGCC+AGG | - | chr4.2:14525934-14525953 | None:intergenic | 40.0% |
| ! | TTACAAGAGGCATGTTCACA+TGG | - | chr4.2:14524781-14524800 | None:intergenic | 40.0% |
| ! | TTCCAAGTACCTTTTAGCCT+TGG | - | chr4.2:14527342-14527361 | None:intergenic | 40.0% |
| !! | AACAGGCAACTGCTTTTCAT+AGG | - | chr4.2:14525221-14525240 | None:intergenic | 40.0% |
| !! | ACAGGCAACTGCTTTTCATA+GGG | - | chr4.2:14525220-14525239 | None:intergenic | 40.0% |
| !! | ATAAACTTCGCTGACTTGAC+TGG | - | chr4.2:14527470-14527489 | None:intergenic | 40.0% |
| !! | ATCTCCCTGATTTTAACGAC+AGG | - | chr4.2:14525254-14525273 | None:intergenic | 40.0% |
| !! | GTGGTTTGTTGTCTTGTGAA+TGG | + | chr4.2:14526356-14526375 | MS.gene09038:intron | 40.0% |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | chr4.2:14525543-14525562 | None:intergenic | 40.0% |
| !!! | TACCTTTTAGCCTTGGTCAA+GGG | - | chr4.2:14527335-14527354 | None:intergenic | 40.0% |
| !!! | TTTTTTACATGCAGCCACCA+AGG | + | chr4.2:14524261-14524280 | MS.gene09038:intron | 40.0% |
| AGACGTTCTTGCACACAAAC+AGG | + | chr4.2:14527361-14527380 | MS.gene09038:CDS | 45.0% | |
| ATATCCCTGAATGTTACGGG+TGG | - | chr4.2:14526583-14526602 | None:intergenic | 45.0% | |
| CAACTAGGCCATTAAGAAGG+TGG | - | chr4.2:14526807-14526826 | None:intergenic | 45.0% | |
| CAAGTCAGCGAAGTTTATCC+TGG | + | chr4.2:14527472-14527491 | MS.gene09038:CDS | 45.0% | |
| CATCTTAGTGGCATAGTTCC+TGG | + | chr4.2:14525418-14525437 | MS.gene09038:intron | 45.0% | |
| CTGCATTCTTCAGCAAATCC+AGG | - | chr4.2:14527493-14527512 | None:intergenic | 45.0% | |
| GCTTCTGTGCTTGATTGACT+TGG | - | chr4.2:14527668-14527687 | None:intergenic | 45.0% | |
| GGACCCTCTTGTTAAACTCA+GGG | + | chr4.2:14526377-14526396 | MS.gene09038:intron | 45.0% | |
| GGCTAACTTAAACAACAGCG+AGG | - | chr4.2:14524868-14524887 | None:intergenic | 45.0% | |
| TCTATATCGAGCAGTCCTCT+CGG | + | chr4.2:14526964-14526983 | MS.gene09038:intron | 45.0% | |
| TGAGGTTCTCCCAAAAACCA+TGG | - | chr4.2:14525282-14525301 | None:intergenic | 45.0% | |
| TGGACCCTCTTGTTAAACTC+AGG | + | chr4.2:14526376-14526395 | MS.gene09038:intron | 45.0% | |
| ! | ACTCTAATGGACAAGGAAGG+TGG | + | chr4.2:14527444-14527463 | MS.gene09038:CDS | 45.0% |
| ! | AGAGTGTCTATTCTTGGCCT+GGG | - | chr4.2:14527429-14527448 | None:intergenic | 45.0% |
| ! | GACACTCTAATGGACAAGGA+AGG | + | chr4.2:14527441-14527460 | MS.gene09038:CDS | 45.0% |
| ! | TAGAGTGTCTATTCTTGGCC+TGG | - | chr4.2:14527430-14527449 | None:intergenic | 45.0% |
| ! | TGTTTCAAGTAGCCTCCTAG+TGG | + | chr4.2:14525901-14525920 | MS.gene09038:intron | 45.0% |
| !! | GACCAAGGCTAAAAGGTACT+TGG | + | chr4.2:14527337-14527356 | MS.gene09038:CDS | 45.0% |
| !! | TACGGGTGGACTGTTCATAT+AGG | - | chr4.2:14526172-14526191 | None:intergenic | 45.0% |
| !!! | GTACCTTTTAGCCTTGGTCA+AGG | - | chr4.2:14527336-14527355 | None:intergenic | 45.0% |
| !! | TAATTAATAATTGATATATT+TGG | + | chr4.2:14526103-14526122 | MS.gene09038:intron | 5.0% |
| !!! | TTTTTATAATTTAATAGATA+AGG | + | chr4.2:14524588-14524607 | MS.gene09038:intron | 5.0% |
| AGACGTTTCTGTCGTGGTGT+TGG | + | chr4.2:14527395-14527414 | MS.gene09038:CDS | 50.0% | |
| ATATCCCTGAAGGTTACGGG+TGG | - | chr4.2:14525585-14525604 | None:intergenic | 50.0% | |
| CCACGACAGAAACGTCTGAA+TGG | - | chr4.2:14527392-14527411 | None:intergenic | 50.0% | |
| CCATTCAGACGTTTCTGTCG+TGG | + | chr4.2:14527389-14527408 | MS.gene09038:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | chr4.2:14527396-14527415 | MS.gene09038:CDS | 50.0% | |
| TAGCCAGGAACTATGCCACT+AGG | - | chr4.2:14525424-14525443 | None:intergenic | 50.0% | |
| TGCCCTTGACCAAGGCTAAA+AGG | + | chr4.2:14527330-14527349 | MS.gene09038:CDS | 50.0% | |
| ! | GAGTGTTTCAAGTAGCCTCC+TGG | + | chr4.2:14525898-14525917 | MS.gene09038:intron | 50.0% |
| ! | GGCGGTTCAGAAAGAGGTAT+TGG | + | chr4.2:14527878-14527897 | MS.gene09038:intron | 50.0% |
| ! | TGTTTCAAGTAGCCTCCTGG+TGG | + | chr4.2:14526003-14526022 | MS.gene09038:intron | 50.0% |
| !! | TACGGGTGGACTGCTCATAT+AGG | - | chr4.2:14525571-14525590 | None:intergenic | 50.0% |
| ACAGTCCACCCGTAACCTTC+AGG | + | chr4.2:14526178-14526197 | MS.gene09038:intron | 55.0% | |
| CAGGAAGTTGCCCTTGACCA+AGG | + | chr4.2:14527322-14527341 | MS.gene09038:CDS | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | chr4.2:14525578-14525597 | MS.gene09038:intron | 55.0% | |
| CCAGGAACTATGCCACTAGG+AGG | - | chr4.2:14525916-14525935 | None:intergenic | 55.0% | |
| CCCTGAATGTTACGGGTGGA+CGG | - | chr4.2:14526579-14526598 | None:intergenic | 55.0% | |
| CCGTCCACCCGTAACATTCA+GGG | + | chr4.2:14526576-14526595 | MS.gene09038:intron | 55.0% | |
| CCTCCTAGTGGCATAGTTCC+TGG | + | chr4.2:14525913-14525932 | MS.gene09038:intron | 55.0% | |
| CGCAGAACATACAGAGCCCA+TGG | + | chr4.2:14527693-14527712 | MS.gene09038:CDS | 55.0% | |
| GGAAGAGGCGGTTCAGAAAG+AGG | + | chr4.2:14527872-14527891 | MS.gene09038:CDS | 55.0% | |
| GGGAAACTGCCTTTGCCATC+AGG | + | chr4.2:14527303-14527322 | MS.gene09038:CDS | 55.0% | |
| GGGCAACTTCCTGATGGCAA+AGG | - | chr4.2:14527315-14527334 | None:intergenic | 55.0% | |
| GGTCAAGGGCAACTTCCTGA+TGG | - | chr4.2:14527321-14527340 | None:intergenic | 55.0% | |
| TACGGGTGGACGGCTCATAT+AGG | - | chr4.2:14526569-14526588 | None:intergenic | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | chr4.2:14527399-14527418 | MS.gene09038:CDS | 55.0% |
| GCAGTCCACCCGTAACCTTC+AGG | + | chr4.2:14525577-14525596 | MS.gene09038:intron | 60.0% | |
| GCCGTCCACCCGTAACATTC+AGG | + | chr4.2:14526575-14526594 | MS.gene09038:intron | 60.0% | |
| TAGCCAGGAACTACGCCACC+AGG | - | chr4.2:14526021-14526040 | None:intergenic | 60.0% | |
| TTTCCAGCCGGAGTCCCAGT+TGG | + | chr4.2:14527988-14528007 | MS.gene09038:intron | 60.0% | |
| CATGCAGCCACCAAGGCTCG+TGG | + | chr4.2:14524268-14524287 | MS.gene09038:intron | 65.0% | |
| CCAGGAACTACGCCACCAGG+AGG | - | chr4.2:14526018-14526037 | None:intergenic | 65.0% | |
| GAGGTCAGCACCACGAGCCT+TGG | - | chr4.2:14524281-14524300 | None:intergenic | 65.0% | |
| GTCAGCACCACGAGCCTTGG+TGG | - | chr4.2:14524278-14524297 | None:intergenic | 65.0% | |
| ! | CCTCCTGGTGGCGTAGTTCC+TGG | + | chr4.2:14526015-14526034 | MS.gene09038:intron | 65.0% |
| ! | TGGTGTTGGGAGGACAGCCC+AGG | + | chr4.2:14527409-14527428 | MS.gene09038:CDS | 65.0% |
| CTGCCAACTGGGACTCCGGC+TGG | - | chr4.2:14527994-14528013 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 14524017 | 14528033 | 14524017 | ID=MS.gene09038 |
| chr4.2 | mRNA | 14524017 | 14528033 | 14524017 | ID=MS.gene09038.t1;Parent=MS.gene09038 |
| chr4.2 | exon | 14524017 | 14524019 | 14524017 | ID=MS.gene09038.t1.exon1;Parent=MS.gene09038.t1 |
| chr4.2 | CDS | 14524017 | 14524019 | 14524017 | ID=cds.MS.gene09038.t1;Parent=MS.gene09038.t1 |
| chr4.2 | exon | 14524131 | 14524167 | 14524131 | ID=MS.gene09038.t1.exon2;Parent=MS.gene09038.t1 |
| chr4.2 | CDS | 14524131 | 14524167 | 14524131 | ID=cds.MS.gene09038.t1;Parent=MS.gene09038.t1 |
| chr4.2 | exon | 14524275 | 14524315 | 14524275 | ID=MS.gene09038.t1.exon3;Parent=MS.gene09038.t1 |
| chr4.2 | CDS | 14524275 | 14524315 | 14524275 | ID=cds.MS.gene09038.t1;Parent=MS.gene09038.t1 |
| chr4.2 | exon | 14527296 | 14527526 | 14527296 | ID=MS.gene09038.t1.exon4;Parent=MS.gene09038.t1 |
| chr4.2 | CDS | 14527296 | 14527526 | 14527296 | ID=cds.MS.gene09038.t1;Parent=MS.gene09038.t1 |
| chr4.2 | exon | 14527624 | 14527726 | 14527624 | ID=MS.gene09038.t1.exon5;Parent=MS.gene09038.t1 |
| chr4.2 | CDS | 14527624 | 14527726 | 14527624 | ID=cds.MS.gene09038.t1;Parent=MS.gene09038.t1 |
| chr4.2 | exon | 14527826 | 14527893 | 14527826 | ID=MS.gene09038.t1.exon6;Parent=MS.gene09038.t1 |
| chr4.2 | CDS | 14527826 | 14527893 | 14527826 | ID=cds.MS.gene09038.t1;Parent=MS.gene09038.t1 |
| chr4.2 | exon | 14527995 | 14528033 | 14527995 | ID=MS.gene09038.t1.exon7;Parent=MS.gene09038.t1 |
| chr4.2 | CDS | 14527995 | 14528033 | 14527995 | ID=cds.MS.gene09038.t1;Parent=MS.gene09038.t1 |
| Gene Sequence |
| Protein sequence |
