Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74444.t1 | XP_003618852.1 | 82.2 | 270 | 47 | 1 | 1 | 269 | 1 | 270 | 3.00E-120 | 441.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74444.t1 | Q5C9I9 | 50.8 | 248 | 121 | 1 | 12 | 258 | 6 | 253 | 5.4e-62 | 239.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74444.t1 | G7KNP7 | 82.2 | 270 | 47 | 1 | 1 | 269 | 1 | 270 | 2.1e-120 | 441.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene74444 | 0.837845 | 4.09E-57 | -1.69E-46 |
| MS.gene049424 | MS.gene74444 | 0.807657 | 4.54E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene74444 | 0.815205 | 1.04E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene74444 | 0.810042 | 1.40E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene74444 | 0.817758 | 2.79E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene74444 | 0.807918 | 4.00E-50 | -1.69E-46 |
| MS.gene050605 | MS.gene74444 | 0.849098 | 4.02E-60 | -1.69E-46 |
| MS.gene050623 | MS.gene74444 | -0.831122 | 2.00E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene74444 | 0.812665 | 3.78E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene74444 | 0.800885 | 1.17E-48 | -1.69E-46 |
| MS.gene051243 | MS.gene74444 | 0.808257 | 3.38E-50 | -1.69E-46 |
| MS.gene051349 | MS.gene74444 | 0.817262 | 3.61E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene74444 | 0.805648 | 1.21E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene74444 | 0.809399 | 1.93E-50 | -1.69E-46 |
| MS.gene051535 | MS.gene74444 | 0.856359 | 3.39E-62 | -1.69E-46 |
| MS.gene051983 | MS.gene74444 | 0.827944 | 1.18E-54 | -1.69E-46 |
| MS.gene052426 | MS.gene74444 | 0.843888 | 1.06E-58 | -1.69E-46 |
| MS.gene052500 | MS.gene74444 | 0.809463 | 1.87E-50 | -1.69E-46 |
| MS.gene052502 | MS.gene74444 | 0.809587 | 1.76E-50 | -1.69E-46 |
| MS.gene052826 | MS.gene74444 | 0.809196 | 2.13E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene74444 | 0.845709 | 3.43E-59 | -1.69E-46 |
| MS.gene053008 | MS.gene74444 | 0.828987 | 6.62E-55 | -1.69E-46 |
| MS.gene053080 | MS.gene74444 | 0.826579 | 2.51E-54 | -1.69E-46 |
| MS.gene053216 | MS.gene74444 | 0.824001 | 1.02E-53 | -1.69E-46 |
| MS.gene054657 | MS.gene74444 | 0.840944 | 6.41E-58 | -1.69E-46 |
| MS.gene054658 | MS.gene74444 | 0.817123 | 3.88E-52 | -1.69E-46 |
| MS.gene054994 | MS.gene74444 | 0.811511 | 6.75E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene74444 | 0.848444 | 6.11E-60 | -1.69E-46 |
| MS.gene055623 | MS.gene74444 | 0.809745 | 1.63E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene74444 | 0.819906 | 9.08E-53 | -1.69E-46 |
| MS.gene055841 | MS.gene74444 | 0.820054 | 8.40E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene74444 | 0.824318 | 8.61E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene74444 | 0.820054 | 8.40E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene74444 | 0.834426 | 3.02E-56 | -1.69E-46 |
| MS.gene057140 | MS.gene74444 | 0.803603 | 3.22E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene74444 | 0.802324 | 5.92E-49 | -1.69E-46 |
| MS.gene057392 | MS.gene74444 | 0.827668 | 1.38E-54 | -1.69E-46 |
| MS.gene057693 | MS.gene74444 | 0.808926 | 2.44E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene74444 | 0.815021 | 1.14E-51 | -1.69E-46 |
| MS.gene05795 | MS.gene74444 | 0.823102 | 1.66E-53 | -1.69E-46 |
| MS.gene058146 | MS.gene74444 | 0.836066 | 1.16E-56 | -1.69E-46 |
| MS.gene058399 | MS.gene74444 | 0.812675 | 3.76E-51 | -1.69E-46 |
| MS.gene058435 | MS.gene74444 | 0.846571 | 2.00E-59 | -1.69E-46 |
| MS.gene058548 | MS.gene74444 | 0.844948 | 5.51E-59 | -1.69E-46 |
| MS.gene058549 | MS.gene74444 | 0.841802 | 3.81E-58 | -1.69E-46 |
| MS.gene058595 | MS.gene74444 | 0.84869 | 5.22E-60 | -1.69E-46 |
| MS.gene058979 | MS.gene74444 | 0.802945 | 4.41E-49 | -1.69E-46 |
| MS.gene059317 | MS.gene74444 | 0.803245 | 3.82E-49 | -1.69E-46 |
| MS.gene059569 | MS.gene74444 | 0.82119 | 4.61E-53 | -1.69E-46 |
| MS.gene05979 | MS.gene74444 | 0.853912 | 1.75E-61 | -1.69E-46 |
| MS.gene060297 | MS.gene74444 | 0.805694 | 1.18E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene74444 | 0.800018 | 1.75E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene74444 | 0.803078 | 4.14E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene74444 | 0.818952 | 1.50E-52 | -1.69E-46 |
| MS.gene060685 | MS.gene74444 | 0.815921 | 7.22E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene74444 | 0.812309 | 4.52E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene74444 | 0.815481 | 9.04E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene74444 | 0.805958 | 1.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74444.t1 | MTR_6g023910 | 82.222 | 270 | 47 | 1 | 1 | 269 | 1 | 270 | 4.47e-164 | 456 |
| MS.gene74444.t1 | MTR_6g023610 | 77.695 | 269 | 59 | 1 | 1 | 268 | 1 | 269 | 1.65e-149 | 419 |
| MS.gene74444.t1 | MTR_6g023590 | 66.792 | 265 | 87 | 1 | 1 | 264 | 1 | 265 | 8.93e-128 | 363 |
| MS.gene74444.t1 | MTR_6g023990 | 66.917 | 266 | 86 | 2 | 1 | 264 | 1 | 266 | 3.16e-125 | 357 |
| MS.gene74444.t1 | MTR_6g023600 | 67.170 | 265 | 86 | 1 | 1 | 264 | 1 | 265 | 1.70e-122 | 350 |
| MS.gene74444.t1 | MTR_6g023950 | 68.582 | 261 | 81 | 1 | 1 | 260 | 1 | 261 | 1.09e-121 | 348 |
| MS.gene74444.t1 | MTR_6g023600 | 65.909 | 264 | 85 | 1 | 1 | 264 | 1 | 259 | 4.99e-118 | 338 |
| MS.gene74444.t1 | MTR_7g110130 | 44.400 | 250 | 137 | 2 | 12 | 260 | 5 | 253 | 8.76e-70 | 216 |
| MS.gene74444.t1 | MTR_2g090165 | 44.980 | 249 | 136 | 1 | 12 | 260 | 5 | 252 | 3.30e-69 | 214 |
| MS.gene74444.t1 | MTR_7g110140 | 44.000 | 250 | 139 | 1 | 11 | 260 | 4 | 252 | 3.82e-66 | 207 |
| MS.gene74444.t1 | MTR_7g110160 | 43.137 | 255 | 114 | 3 | 12 | 260 | 5 | 234 | 3.63e-62 | 196 |
| MS.gene74444.t1 | MTR_6g023940 | 52.582 | 213 | 40 | 3 | 1 | 213 | 1 | 152 | 3.83e-60 | 187 |
| MS.gene74444.t1 | MTR_7g105460 | 40.458 | 262 | 151 | 4 | 1 | 260 | 1 | 259 | 8.83e-59 | 188 |
| MS.gene74444.t1 | MTR_6g035395 | 42.400 | 250 | 128 | 4 | 12 | 260 | 4 | 238 | 8.39e-58 | 185 |
| MS.gene74444.t1 | MTR_7g071680 | 42.086 | 278 | 130 | 9 | 12 | 265 | 28 | 298 | 7.45e-57 | 184 |
| MS.gene74444.t1 | MTR_4g052300 | 42.188 | 256 | 134 | 7 | 8 | 258 | 3 | 249 | 6.28e-56 | 181 |
| MS.gene74444.t1 | MTR_4g052340 | 42.353 | 255 | 129 | 7 | 12 | 259 | 13 | 256 | 1.88e-54 | 177 |
| MS.gene74444.t1 | MTR_4g052320 | 40.784 | 255 | 144 | 6 | 8 | 260 | 3 | 252 | 4.75e-54 | 176 |
| MS.gene74444.t1 | MTR_4g078630 | 40.602 | 266 | 146 | 5 | 12 | 269 | 18 | 279 | 1.42e-52 | 172 |
| MS.gene74444.t1 | MTR_4g052350 | 39.147 | 258 | 145 | 5 | 12 | 265 | 13 | 262 | 1.16e-51 | 170 |
| MS.gene74444.t1 | MTR_7g105580 | 38.554 | 249 | 134 | 4 | 12 | 260 | 7 | 236 | 7.44e-47 | 157 |
| MS.gene74444.t1 | MTR_7g107670 | 35.094 | 265 | 163 | 5 | 7 | 265 | 27 | 288 | 5.03e-45 | 154 |
| MS.gene74444.t1 | MTR_7g083870 | 35.249 | 261 | 159 | 7 | 12 | 265 | 34 | 291 | 7.91e-44 | 150 |
| MS.gene74444.t1 | MTR_7g105590 | 40.212 | 189 | 110 | 3 | 12 | 199 | 7 | 193 | 1.85e-40 | 139 |
| MS.gene74444.t1 | MTR_3g020670 | 35.409 | 257 | 156 | 5 | 12 | 260 | 15 | 269 | 1.67e-39 | 139 |
| MS.gene74444.t1 | MTR_4g084800 | 47.857 | 140 | 71 | 2 | 1 | 139 | 1 | 139 | 1.92e-35 | 124 |
| MS.gene74444.t1 | MTR_3g113870 | 37.838 | 185 | 107 | 5 | 21 | 202 | 29 | 208 | 3.50e-32 | 118 |
| MS.gene74444.t1 | MTR_7g105570 | 30.120 | 249 | 120 | 3 | 13 | 260 | 21 | 216 | 2.35e-24 | 98.2 |
| MS.gene74444.t1 | MTR_7g113650 | 29.771 | 262 | 162 | 8 | 12 | 261 | 39 | 290 | 2.96e-23 | 96.3 |
| MS.gene74444.t1 | MTR_1g082760 | 30.038 | 263 | 160 | 8 | 12 | 261 | 39 | 290 | 2.40e-22 | 94.0 |
| MS.gene74444.t1 | MTR_7g094510 | 28.519 | 270 | 158 | 8 | 10 | 261 | 3 | 255 | 8.81e-20 | 86.3 |
| MS.gene74444.t1 | MTR_4g064887 | 30.370 | 270 | 163 | 8 | 1 | 258 | 1 | 257 | 6.63e-19 | 84.0 |
| MS.gene74444.t1 | MTR_3g085740 | 28.148 | 270 | 171 | 10 | 1 | 261 | 64 | 319 | 4.19e-18 | 82.8 |
| MS.gene74444.t1 | MTR_4g131740 | 28.922 | 204 | 133 | 4 | 8 | 202 | 35 | 235 | 1.22e-17 | 81.3 |
| MS.gene74444.t1 | MTR_7g105560 | 59.701 | 67 | 26 | 1 | 1 | 67 | 1 | 66 | 1.53e-17 | 77.8 |
| MS.gene74444.t1 | MTR_4g132850 | 27.165 | 254 | 173 | 5 | 12 | 262 | 6 | 250 | 1.70e-17 | 80.1 |
| MS.gene74444.t1 | MTR_7g094520 | 28.125 | 256 | 171 | 6 | 13 | 261 | 11 | 260 | 4.54e-17 | 79.0 |
| MS.gene74444.t1 | MTR_4g064887 | 30.047 | 213 | 139 | 5 | 1 | 207 | 1 | 209 | 1.98e-15 | 73.9 |
| MS.gene74444.t1 | MTR_7g063260 | 27.099 | 262 | 186 | 4 | 4 | 262 | 7 | 266 | 5.19e-15 | 73.2 |
| MS.gene74444.t1 | MTR_1196s0010 | 26.908 | 249 | 168 | 7 | 16 | 261 | 277 | 514 | 7.13e-14 | 71.6 |
| MS.gene74444.t1 | MTR_7g063270 | 26.236 | 263 | 186 | 5 | 4 | 262 | 7 | 265 | 1.08e-13 | 69.7 |
| MS.gene74444.t1 | MTR_4g058810 | 27.092 | 251 | 163 | 6 | 13 | 251 | 11 | 253 | 1.12e-13 | 69.7 |
| MS.gene74444.t1 | MTR_7g063320 | 28.889 | 270 | 165 | 9 | 6 | 261 | 8 | 264 | 1.35e-13 | 69.3 |
| MS.gene74444.t1 | MTR_3g068175 | 27.016 | 248 | 174 | 4 | 13 | 258 | 17 | 259 | 3.79e-13 | 68.2 |
| MS.gene74444.t1 | MTR_1g051165 | 26.070 | 257 | 177 | 6 | 12 | 257 | 13 | 267 | 6.03e-13 | 67.8 |
| MS.gene74444.t1 | MTR_3g068175 | 26.190 | 252 | 175 | 5 | 13 | 258 | 17 | 263 | 1.14e-12 | 66.6 |
| MS.gene74444.t1 | MTR_4g058840 | 26.693 | 251 | 164 | 6 | 13 | 251 | 11 | 253 | 1.20e-12 | 66.6 |
| MS.gene74444.t1 | MTR_4g058820 | 26.693 | 251 | 164 | 6 | 13 | 251 | 11 | 253 | 1.20e-12 | 66.6 |
| MS.gene74444.t1 | MTR_3g068085 | 26.482 | 253 | 175 | 6 | 13 | 261 | 15 | 260 | 3.01e-12 | 65.5 |
| MS.gene74444.t1 | MTR_3g068155 | 28.000 | 250 | 169 | 6 | 13 | 258 | 19 | 261 | 6.02e-12 | 64.7 |
| MS.gene74444.t1 | MTR_3g068065 | 27.308 | 260 | 166 | 9 | 13 | 262 | 17 | 263 | 7.16e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74444.t1 | AT2G47140 | 46.988 | 249 | 131 | 1 | 12 | 260 | 5 | 252 | 3.45e-72 | 222 |
| MS.gene74444.t1 | AT2G47130 | 44.922 | 256 | 131 | 4 | 9 | 260 | 2 | 251 | 3.40e-64 | 202 |
| MS.gene74444.t1 | AT3G29250 | 42.460 | 252 | 144 | 1 | 9 | 260 | 2 | 252 | 4.68e-62 | 196 |
| MS.gene74444.t1 | AT3G29250 | 42.520 | 254 | 145 | 1 | 7 | 260 | 36 | 288 | 1.28e-61 | 196 |
| MS.gene74444.t1 | AT3G29250 | 42.188 | 256 | 145 | 2 | 7 | 260 | 36 | 290 | 1.14e-59 | 191 |
| MS.gene74444.t1 | AT2G47120 | 42.063 | 252 | 143 | 3 | 9 | 260 | 2 | 250 | 1.24e-59 | 190 |
| MS.gene74444.t1 | AT3G29260 | 44.177 | 249 | 137 | 2 | 12 | 260 | 5 | 251 | 1.52e-59 | 190 |
| MS.gene74444.t1 | AT2G47120 | 42.169 | 249 | 141 | 3 | 12 | 260 | 6 | 251 | 7.15e-59 | 188 |
| MS.gene74444.t1 | AT3G51680 | 39.649 | 285 | 147 | 6 | 1 | 265 | 20 | 299 | 1.62e-53 | 176 |
| MS.gene74444.t1 | AT3G26760 | 35.688 | 269 | 161 | 6 | 6 | 265 | 29 | 294 | 2.87e-48 | 162 |
| MS.gene74444.t1 | AT1G52340 | 39.231 | 260 | 145 | 6 | 12 | 260 | 17 | 274 | 8.86e-44 | 150 |
| MS.gene74444.t1 | AT3G26770 | 35.472 | 265 | 151 | 7 | 12 | 264 | 40 | 296 | 1.33e-42 | 147 |
| MS.gene74444.t1 | AT4G03140 | 35.769 | 260 | 158 | 5 | 12 | 265 | 77 | 333 | 3.76e-42 | 147 |
| MS.gene74444.t1 | AT3G42960 | 37.591 | 274 | 156 | 8 | 6 | 269 | 1 | 269 | 1.15e-40 | 142 |
| MS.gene74444.t1 | AT3G05260 | 28.358 | 268 | 171 | 8 | 4 | 258 | 24 | 283 | 1.13e-21 | 92.0 |
| MS.gene74444.t1 | AT1G54870 | 28.947 | 266 | 159 | 8 | 12 | 261 | 83 | 334 | 1.74e-20 | 89.7 |
| MS.gene74444.t1 | AT1G54870 | 28.947 | 266 | 159 | 8 | 12 | 261 | 81 | 332 | 1.84e-20 | 89.7 |
| MS.gene74444.t1 | AT4G13180 | 25.784 | 287 | 162 | 11 | 1 | 261 | 1 | 262 | 2.74e-18 | 82.4 |
| MS.gene74444.t1 | AT3G03980 | 28.772 | 285 | 157 | 10 | 4 | 261 | 5 | 270 | 9.10e-17 | 78.2 |
| MS.gene74444.t1 | AT2G29340 | 29.297 | 256 | 168 | 7 | 8 | 258 | 2 | 249 | 6.06e-16 | 75.9 |
| MS.gene74444.t1 | AT5G18210 | 27.376 | 263 | 167 | 7 | 13 | 261 | 8 | 260 | 6.54e-16 | 75.9 |
| MS.gene74444.t1 | AT1G07450 | 28.405 | 257 | 170 | 7 | 9 | 260 | 4 | 251 | 8.79e-16 | 75.5 |
| MS.gene74444.t1 | AT5G06060 | 27.969 | 261 | 171 | 7 | 7 | 260 | 3 | 253 | 1.08e-15 | 75.1 |
| MS.gene74444.t1 | AT2G29340 | 29.297 | 256 | 168 | 7 | 8 | 258 | 2 | 249 | 1.28e-15 | 75.5 |
| MS.gene74444.t1 | AT2G29150 | 28.295 | 258 | 177 | 6 | 3 | 258 | 6 | 257 | 5.73e-15 | 73.2 |
| MS.gene74444.t1 | AT5G18210 | 28.455 | 246 | 152 | 7 | 13 | 244 | 8 | 243 | 3.76e-14 | 71.2 |
| MS.gene74444.t1 | AT1G63380 | 28.244 | 262 | 159 | 10 | 13 | 257 | 19 | 268 | 1.25e-13 | 69.7 |
| MS.gene74444.t1 | AT1G63380 | 28.244 | 262 | 159 | 10 | 13 | 257 | 15 | 264 | 1.34e-13 | 69.7 |
| MS.gene74444.t1 | AT1G63380 | 28.244 | 262 | 159 | 10 | 13 | 257 | 17 | 266 | 1.47e-13 | 69.3 |
| MS.gene74444.t1 | AT1G63380 | 28.244 | 262 | 159 | 10 | 13 | 257 | 22 | 271 | 1.53e-13 | 69.3 |
| MS.gene74444.t1 | AT2G29340 | 29.126 | 206 | 136 | 6 | 8 | 208 | 2 | 202 | 3.03e-13 | 67.4 |
| MS.gene74444.t1 | AT2G29340 | 29.126 | 206 | 136 | 6 | 8 | 208 | 2 | 202 | 3.03e-13 | 67.4 |
| MS.gene74444.t1 | AT2G29330 | 28.112 | 249 | 170 | 6 | 13 | 258 | 7 | 249 | 1.37e-12 | 66.6 |
| MS.gene74444.t1 | AT3G55310 | 29.126 | 206 | 132 | 5 | 12 | 207 | 16 | 217 | 1.40e-12 | 66.6 |
| MS.gene74444.t1 | AT2G29350 | 25.194 | 258 | 175 | 4 | 8 | 258 | 10 | 256 | 3.22e-12 | 65.5 |
| MS.gene74444.t1 | AT2G29310 | 27.132 | 258 | 175 | 6 | 8 | 260 | 2 | 251 | 3.41e-12 | 65.5 |
| MS.gene74444.t1 | AT3G04000 | 24.823 | 282 | 171 | 7 | 2 | 258 | 3 | 268 | 4.18e-12 | 65.1 |
| MS.gene74444.t1 | AT3G46170 | 26.255 | 259 | 169 | 7 | 12 | 257 | 25 | 274 | 4.83e-12 | 65.1 |
| MS.gene74444.t1 | AT1G62610 | 26.820 | 261 | 164 | 9 | 13 | 257 | 19 | 268 | 5.11e-12 | 65.1 |
| MS.gene74444.t1 | AT3G55290 | 28.571 | 203 | 137 | 4 | 12 | 207 | 16 | 217 | 5.59e-12 | 65.1 |
| MS.gene74444.t1 | AT1G62610 | 26.820 | 261 | 164 | 9 | 13 | 257 | 13 | 262 | 5.61e-12 | 64.7 |
| MS.gene74444.t1 | AT3G55290 | 26.357 | 258 | 170 | 7 | 12 | 257 | 17 | 266 | 5.70e-12 | 65.1 |
| MS.gene74444.t1 | AT1G62610 | 26.820 | 261 | 164 | 9 | 13 | 257 | 14 | 263 | 5.94e-12 | 64.7 |
| MS.gene74444.t1 | AT1G62610 | 26.820 | 261 | 164 | 9 | 13 | 257 | 15 | 264 | 5.99e-12 | 64.7 |
| MS.gene74444.t1 | AT1G07440 | 26.772 | 254 | 176 | 5 | 8 | 258 | 7 | 253 | 1.57e-11 | 63.5 |
| MS.gene74444.t1 | AT2G29260 | 26.613 | 248 | 175 | 5 | 13 | 258 | 68 | 310 | 3.95e-11 | 62.8 |
Find 67 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCGAAGCACGCAATAAT+AGG | 0.205116 | 6.4:-164487 | MS.gene74444:CDS |
| GTGGATGGTAGCTATGTTTC+TGG | 0.232178 | 6.4:-164220 | MS.gene74444:CDS |
| CATTCACTAACAACAATCTT+AGG | 0.241211 | 6.4:-165254 | MS.gene74444:CDS |
| GGCAGATGCTGTGTTGTTCT+TGG | 0.321180 | 6.4:-164284 | MS.gene74444:CDS |
| TACCATGCGTTCACCTTGTT+CGG | 0.342845 | 6.4:+165161 | None:intergenic |
| CAATCGACAGTCAATACTTA+TGG | 0.350908 | 6.4:-165021 | MS.gene74444:CDS |
| GATATTATGTTTAGCAATGC+TGG | 0.362324 | 6.4:-164713 | MS.gene74444:CDS |
| GCCAATGCCGCTGGCACCTC+CGG | 0.364087 | 6.4:+165206 | None:intergenic |
| AGTGAATGTAGGTGCATCTA+TGG | 0.374597 | 6.4:+165082 | None:intergenic |
| CTTGATTTCCCAACTCGTCT+TGG | 0.391032 | 6.4:+165124 | None:intergenic |
| GTGCTTCGACATTATGTAAT+CGG | 0.396590 | 6.4:+164498 | None:intergenic |
| CGTCTCTTTGCCAATGCCGC+TGG | 0.405832 | 6.4:+165197 | None:intergenic |
| ACCGGAGGTGCCAGCGGCAT+TGG | 0.425693 | 6.4:-165207 | MS.gene74444:CDS |
| AACTTGCAAAGCATGGGATA+AGG | 0.445636 | 6.4:-164441 | MS.gene74444:CDS |
| AACAACAATCTTAGGTTAGC+AGG | 0.450218 | 6.4:-165246 | MS.gene74444:CDS |
| TTGTTCTCAGTTAACATTCG+AGG | 0.461567 | 6.4:-164631 | MS.gene74444:CDS |
| GTGTGCACGGCTAGCGTCGC+CGG | 0.471191 | 6.4:-164544 | MS.gene74444:CDS |
| TCCAACACAGTTTGATCAGA+TGG | 0.473176 | 6.4:+164680 | None:intergenic |
| GCCGACATCCAAGACGAGTT+GGG | 0.474113 | 6.4:-165132 | MS.gene74444:CDS |
| CAATGGTGGACGGGTGCGTG+AGG | 0.474303 | 6.4:-164576 | MS.gene74444:CDS |
| GAATGTTAACTGAGAACAAA+TGG | 0.474911 | 6.4:+164635 | None:intergenic |
| GTGAATTGTGTATCACCAAA+TGG | 0.474979 | 6.4:-164418 | MS.gene74444:CDS |
| TGTCGAAGCACGCAATAATA+GGG | 0.476932 | 6.4:-164486 | MS.gene74444:CDS |
| GGAGAATACAAGAGGTTGGA+AGG | 0.477377 | 6.4:-164331 | MS.gene74444:CDS |
| TCCCAACTCGTCTTGGATGT+CGG | 0.482522 | 6.4:+165131 | None:intergenic |
| CTCAGTTAACATTCGAGGAA+TGG | 0.485569 | 6.4:-164626 | MS.gene74444:CDS |
| CGCCGACATCCAAGACGAGT+TGG | 0.490614 | 6.4:-165133 | MS.gene74444:CDS |
| ACTTGCAAAGCATGGGATAA+GGG | 0.492055 | 6.4:-164440 | MS.gene74444:CDS |
| ACATGTAAATTGCTAGATGC+AGG | 0.492615 | 6.4:-164379 | MS.gene74444:CDS |
| GGCAAAATAGCCATCGTCAC+CGG | 0.494254 | 6.4:-165225 | MS.gene74444:CDS |
| AATGGTGTTGCTAATCCATT+TGG | 0.497446 | 6.4:+164403 | None:intergenic |
| ATGGTGGACGGGTGCGTGAG+GGG | 0.498110 | 6.4:-164574 | MS.gene74444:CDS |
| GGCCTTGATCTTCGTGTGGA+TGG | 0.499300 | 6.4:-164235 | MS.gene74444:CDS |
| AATGGTGGACGGGTGCGTGA+GGG | 0.501756 | 6.4:-164575 | MS.gene74444:CDS |
| AATCAAGTTGCTGCATCCAT+TGG | 0.502662 | 6.4:-165108 | MS.gene74444:CDS |
| TCTAGCAATTTACATGTCAA+TGG | 0.504616 | 6.4:+164385 | None:intergenic |
| ATATTATGTTTAGCAATGCT+GGG | 0.517928 | 6.4:-164712 | MS.gene74444:CDS |
| AATAATAGGGTTGATGCGTT+CGG | 0.520347 | 6.4:-164473 | MS.gene74444:CDS |
| GAGGGGTAGCATTGTGTGCA+CGG | 0.524508 | 6.4:-164557 | MS.gene74444:CDS |
| TCCATCTGATCAAACTGTGT+TGG | 0.527521 | 6.4:-164681 | MS.gene74444:CDS |
| TTAACTGAGAACAAATGGTC+AGG | 0.533653 | 6.4:+164640 | None:intergenic |
| AGTGTGCAACTTGCAAAGCA+TGG | 0.534452 | 6.4:-164448 | MS.gene74444:CDS |
| GTGCATGTCTTTGCCGAACA+AGG | 0.542837 | 6.4:-165174 | MS.gene74444:CDS |
| CAAGTTGCTGCATCCATTGG+AGG | 0.543473 | 6.4:-165105 | MS.gene74444:CDS |
| TGGCACGTGCAATGGTGGAC+GGG | 0.544118 | 6.4:-164585 | MS.gene74444:CDS |
| CTTCAAGCCACCATGGCTAC+CGG | 0.548980 | 6.4:+164525 | None:intergenic |
| GTGGCACGTGCAATGGTGGA+CGG | 0.549228 | 6.4:-164586 | MS.gene74444:CDS |
| AATGAATCTGACTTTGTCAC+TGG | 0.556942 | 6.4:-164256 | MS.gene74444:CDS |
| CAGCGGCATTGGCAAAGAGA+CGG | 0.557214 | 6.4:-165196 | MS.gene74444:CDS |
| GCTAGCGTCGCCGGTAGCCA+TGG | 0.557609 | 6.4:-164535 | MS.gene74444:CDS |
| TACCATCCACACGAAGATCA+AGG | 0.559297 | 6.4:+164233 | None:intergenic |
| CACTGGCCTTGATCTTCGTG+TGG | 0.560496 | 6.4:-164239 | MS.gene74444:CDS |
| ATACAAGAGGTTGGAAGGAG+TGG | 0.561860 | 6.4:-164326 | MS.gene74444:CDS |
| GAAACATGTGGCACGTGCAA+TGG | 0.568899 | 6.4:-164593 | MS.gene74444:CDS |
| TGGATGGTAGCTATGTTTCT+GGG | 0.569954 | 6.4:-164219 | MS.gene74444:CDS |
| GTGTGCAACTTGCAAAGCAT+GGG | 0.574953 | 6.4:-164447 | MS.gene74444:CDS |
| GCTGGCACCTCCGGTGACGA+TGG | 0.584463 | 6.4:+165215 | None:intergenic |
| ACATGTGGCACGTGCAATGG+TGG | 0.588988 | 6.4:-164590 | MS.gene74444:CDS |
| ATCGTCACCGGAGGTGCCAG+CGG | 0.590387 | 6.4:-165213 | MS.gene74444:CDS |
| GGTGCATCTATGGCCTCCAA+TGG | 0.599803 | 6.4:+165092 | None:intergenic |
| TGCCGAACAAGGTGAACGCA+TGG | 0.615018 | 6.4:-165163 | MS.gene74444:CDS |
| AGCGTCGCCGGTAGCCATGG+TGG | 0.624023 | 6.4:-164532 | MS.gene74444:CDS |
| CGGTTAACTTCAAGCCACCA+TGG | 0.628720 | 6.4:+164518 | None:intergenic |
| TGCTACGTCACAGTGAATGT+AGG | 0.629129 | 6.4:+165071 | None:intergenic |
| AAAATAGCCATCGTCACCGG+AGG | 0.676812 | 6.4:-165222 | MS.gene74444:CDS |
| GGCATTGTGCGTGAAACATG+TGG | 0.681076 | 6.4:-164605 | MS.gene74444:CDS |
| GGTTCTCAACACTAAACATG+TGG | 0.686817 | 6.4:-164305 | MS.gene74444:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATTATGTTTAGCAATGCT+GGG | - | chr6.4:164753-164772 | MS.gene74444:intron | 25.0% |
| ! | CACAAATGATTCATGATATT+AGG | - | chr6.4:164584-164603 | MS.gene74444:CDS | 25.0% |
| !!! | AAGACAGTTGATTTGATTTT+TGG | - | chr6.4:165113-165132 | MS.gene74444:CDS | 25.0% |
| AACATAATATCTACCTGTTG+CGG | + | chr6.4:164743-164762 | None:intergenic | 30.0% | |
| CATTCACTAACAACAATCTT+AGG | - | chr6.4:164211-164230 | MS.gene74444:CDS | 30.0% | |
| GAATGTTAACTGAGAACAAA+TGG | + | chr6.4:164833-164852 | None:intergenic | 30.0% | |
| GATATTATGTTTAGCAATGC+TGG | - | chr6.4:164752-164771 | MS.gene74444:intron | 30.0% | |
| TCTAGCAATTTACATGTCAA+TGG | + | chr6.4:165083-165102 | None:intergenic | 30.0% | |
| !! | TGATTTTTGGAGAATACAAG+AGG | - | chr6.4:165126-165145 | MS.gene74444:CDS | 30.0% |
| AACAACAATCTTAGGTTAGC+AGG | - | chr6.4:164219-164238 | MS.gene74444:CDS | 35.0% | |
| AATGAATCTGACTTTGTCAC+TGG | - | chr6.4:165209-165228 | MS.gene74444:CDS | 35.0% | |
| ACATGTAAATTGCTAGATGC+AGG | - | chr6.4:165086-165105 | MS.gene74444:CDS | 35.0% | |
| CAATCGACAGTCAATACTTA+TGG | - | chr6.4:164444-164463 | MS.gene74444:CDS | 35.0% | |
| GTGAATTGTGTATCACCAAA+TGG | - | chr6.4:165047-165066 | MS.gene74444:CDS | 35.0% | |
| GTGCTTCGACATTATGTAAT+CGG | + | chr6.4:164970-164989 | None:intergenic | 35.0% | |
| TTAACTGAGAACAAATGGTC+AGG | + | chr6.4:164828-164847 | None:intergenic | 35.0% | |
| TTGTTCTCAGTTAACATTCG+AGG | - | chr6.4:164834-164853 | MS.gene74444:intron | 35.0% | |
| !! | AATAATAGGGTTGATGCGTT+CGG | - | chr6.4:164992-165011 | MS.gene74444:intron | 35.0% |
| !! | AATGGTGTTGCTAATCCATT+TGG | + | chr6.4:165065-165084 | None:intergenic | 35.0% |
| !! | TTTTGGAGAATACAAGAGGT+TGG | - | chr6.4:165130-165149 | MS.gene74444:CDS | 35.0% |
| !!! | AGTTATTTCTTTTCCGCAAC+AGG | - | chr6.4:164727-164746 | MS.gene74444:intron | 35.0% |
| AACTTGCAAAGCATGGGATA+AGG | - | chr6.4:165024-165043 | MS.gene74444:CDS | 40.0% | |
| ACTTGCAAAGCATGGGATAA+GGG | - | chr6.4:165025-165044 | MS.gene74444:CDS | 40.0% | |
| AGTGAATGTAGGTGCATCTA+TGG | + | chr6.4:164386-164405 | None:intergenic | 40.0% | |
| ATGTCGAAGCACGCAATAAT+AGG | - | chr6.4:164978-164997 | MS.gene74444:intron | 40.0% | |
| CTCAGTTAACATTCGAGGAA+TGG | - | chr6.4:164839-164858 | MS.gene74444:intron | 40.0% | |
| GGTTCTCAACACTAAACATG+TGG | - | chr6.4:165160-165179 | MS.gene74444:CDS | 40.0% | |
| TCCAACACAGTTTGATCAGA+TGG | + | chr6.4:164788-164807 | None:intergenic | 40.0% | |
| TCCATCTGATCAAACTGTGT+TGG | - | chr6.4:164784-164803 | MS.gene74444:intron | 40.0% | |
| TCGCACAACATATCTATCTC+TGG | + | chr6.4:164687-164706 | None:intergenic | 40.0% | |
| TGGATGGTAGCTATGTTTCT+GGG | - | chr6.4:165246-165265 | MS.gene74444:CDS | 40.0% | |
| TGTCGAAGCACGCAATAATA+GGG | - | chr6.4:164979-164998 | MS.gene74444:intron | 40.0% | |
| ! | AATCAAGTTGCTGCATCCAT+TGG | - | chr6.4:164357-164376 | MS.gene74444:CDS | 40.0% |
| AGTGTGCAACTTGCAAAGCA+TGG | - | chr6.4:165017-165036 | MS.gene74444:CDS | 45.0% | |
| ATACAAGAGGTTGGAAGGAG+TGG | - | chr6.4:165139-165158 | MS.gene74444:CDS | 45.0% | |
| CTTGATTTCCCAACTCGTCT+TGG | + | chr6.4:164344-164363 | None:intergenic | 45.0% | |
| GGAGAATACAAGAGGTTGGA+AGG | - | chr6.4:165134-165153 | MS.gene74444:CDS | 45.0% | |
| GTGGATGGTAGCTATGTTTC+TGG | - | chr6.4:165245-165264 | MS.gene74444:CDS | 45.0% | |
| GTGTGCAACTTGCAAAGCAT+GGG | - | chr6.4:165018-165037 | MS.gene74444:CDS | 45.0% | |
| TACCATCCACACGAAGATCA+AGG | + | chr6.4:165235-165254 | None:intergenic | 45.0% | |
| TACCATGCGTTCACCTTGTT+CGG | + | chr6.4:164307-164326 | None:intergenic | 45.0% | |
| TGCTACGTCACAGTGAATGT+AGG | + | chr6.4:164397-164416 | None:intergenic | 45.0% | |
| !!! | ATTAACTAATTTTAAATATT+AGG | - | chr6.4:164477-164496 | MS.gene74444:CDS | 5.0% |
| AAAATAGCCATCGTCACCGG+AGG | - | chr6.4:164243-164262 | MS.gene74444:CDS | 50.0% | |
| CAAGTTGCTGCATCCATTGG+AGG | - | chr6.4:164360-164379 | MS.gene74444:CDS | 50.0% | |
| CGGTTAACTTCAAGCCACCA+TGG | + | chr6.4:164950-164969 | None:intergenic | 50.0% | |
| GAAACATGTGGCACGTGCAA+TGG | - | chr6.4:164872-164891 | MS.gene74444:intron | 50.0% | |
| GGCAAAATAGCCATCGTCAC+CGG | - | chr6.4:164240-164259 | MS.gene74444:CDS | 50.0% | |
| GGCATTGTGCGTGAAACATG+TGG | - | chr6.4:164860-164879 | MS.gene74444:intron | 50.0% | |
| GTGCATGTCTTTGCCGAACA+AGG | - | chr6.4:164291-164310 | MS.gene74444:CDS | 50.0% | |
| TCCCAACTCGTCTTGGATGT+CGG | + | chr6.4:164337-164356 | None:intergenic | 50.0% | |
| ! | GGCAGATGCTGTGTTGTTCT+TGG | - | chr6.4:165181-165200 | MS.gene74444:CDS | 50.0% |
| ACATGTGGCACGTGCAATGG+TGG | - | chr6.4:164875-164894 | MS.gene74444:intron | 55.0% | |
| CTTCAAGCCACCATGGCTAC+CGG | + | chr6.4:164943-164962 | None:intergenic | 55.0% | |
| GAGGGGTAGCATTGTGTGCA+CGG | - | chr6.4:164908-164927 | MS.gene74444:intron | 55.0% | |
| GCCGACATCCAAGACGAGTT+GGG | - | chr6.4:164333-164352 | MS.gene74444:CDS | 55.0% | |
| GGCCTTGATCTTCGTGTGGA+TGG | - | chr6.4:165230-165249 | MS.gene74444:CDS | 55.0% | |
| GGTGCATCTATGGCCTCCAA+TGG | + | chr6.4:164376-164395 | None:intergenic | 55.0% | |
| TGCCGAACAAGGTGAACGCA+TGG | - | chr6.4:164302-164321 | MS.gene74444:CDS | 55.0% | |
| !! | CACTGGCCTTGATCTTCGTG+TGG | - | chr6.4:165226-165245 | MS.gene74444:CDS | 55.0% |
| !! | CAGCGGCATTGGCAAAGAGA+CGG | - | chr6.4:164269-164288 | MS.gene74444:CDS | 55.0% |
| CGCCGACATCCAAGACGAGT+TGG | - | chr6.4:164332-164351 | MS.gene74444:CDS | 60.0% | |
| CGTCTCTTTGCCAATGCCGC+TGG | + | chr6.4:164271-164290 | None:intergenic | 60.0% | |
| ! | GTGGCACGTGCAATGGTGGA+CGG | - | chr6.4:164879-164898 | MS.gene74444:intron | 60.0% |
| !! | AATGGTGGACGGGTGCGTGA+GGG | - | chr6.4:164890-164909 | MS.gene74444:intron | 60.0% |
| !! | TGGCACGTGCAATGGTGGAC+GGG | - | chr6.4:164880-164899 | MS.gene74444:intron | 60.0% |
| !! | ATCGTCACCGGAGGTGCCAG+CGG | - | chr6.4:164252-164271 | MS.gene74444:CDS | 65.0% |
| !! | ATGGTGGACGGGTGCGTGAG+GGG | - | chr6.4:164891-164910 | MS.gene74444:intron | 65.0% |
| !! | CAATGGTGGACGGGTGCGTG+AGG | - | chr6.4:164889-164908 | MS.gene74444:intron | 65.0% |
| AGCGTCGCCGGTAGCCATGG+TGG | - | chr6.4:164933-164952 | MS.gene74444:intron | 70.0% | |
| GCCAATGCCGCTGGCACCTC+CGG | + | chr6.4:164262-164281 | None:intergenic | 70.0% | |
| GCTAGCGTCGCCGGTAGCCA+TGG | - | chr6.4:164930-164949 | MS.gene74444:intron | 70.0% | |
| GCTGGCACCTCCGGTGACGA+TGG | + | chr6.4:164253-164272 | None:intergenic | 70.0% | |
| GTGTGCACGGCTAGCGTCGC+CGG | - | chr6.4:164921-164940 | MS.gene74444:intron | 70.0% | |
| !! | ACCGGAGGTGCCAGCGGCAT+TGG | - | chr6.4:164258-164277 | MS.gene74444:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 164198 | 165289 | 164198 | ID=MS.gene74444 |
| chr6.4 | mRNA | 164198 | 165289 | 164198 | ID=MS.gene74444.t1;Parent=MS.gene74444 |
| chr6.4 | exon | 165017 | 165289 | 165017 | ID=MS.gene74444.t1.exon1;Parent=MS.gene74444.t1 |
| chr6.4 | CDS | 165017 | 165289 | 165017 | ID=cds.MS.gene74444.t1;Parent=MS.gene74444.t1 |
| chr6.4 | exon | 164198 | 164734 | 164198 | ID=MS.gene74444.t1.exon2;Parent=MS.gene74444.t1 |
| chr6.4 | CDS | 164198 | 164734 | 164198 | ID=cds.MS.gene74444.t1;Parent=MS.gene74444.t1 |
| Gene Sequence |
| Protein sequence |
