AlfalfaGEDB | MS.gene75689

M. sativa cultivar XinJiangDaYe / MS.gene75689

KEGG: K11717
GO: GO:0000096 GO:0003674 GO:0003824 GO:0005488 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009069 GO:0009987 GO:0016740 GO:0016782 GO:0016783 GO:0019752 GO:0019842 GO:0030170 GO:0031071 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901605
PFAM: PF00266.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75689.t1	XP_003601651.2	98.1	466	9	0	1	466	1	466	1.60E-262	914.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75689.t1	Q93WX6	77.7	466	101	1	1	466	1	463	1.5e-205	716.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75689.t1	G7JA74	98.1	466	9	0	1	466	1	466	1.1e-262	914.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene75689	0.826665	2.40E-54	-1.69E-46
MS.gene049222	MS.gene75689	0.81257	3.97E-51	-1.69E-46
MS.gene049285	MS.gene75689	0.82846	8.88E-55	-1.69E-46
MS.gene049320	MS.gene75689	0.808311	3.30E-50	-1.69E-46
MS.gene049633	MS.gene75689	0.83817	3.37E-57	-1.69E-46
MS.gene050163	MS.gene75689	0.805131	1.55E-49	-1.69E-46
MS.gene050165	MS.gene75689	0.831311	1.79E-55	-1.69E-46
MS.gene050170	MS.gene75689	0.829966	3.83E-55	-1.69E-46
MS.gene050323	MS.gene75689	0.83989	1.21E-57	-1.69E-46
MS.gene050333	MS.gene75689	0.85362	2.12E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75689.t1	MTR_3g083980	98.069	466	9	0	1	466	1	466	0.0	946
MS.gene75689.t1	MTR_3g083980	97.846	325	7	0	1	325	1	325	0.0	654
MS.gene75689.t1	MTR_5g014820	25.258	388	257	9	77	453	56	421	1.29e-24	106
MS.gene75689.t1	MTR_7g111540	24.603	252	161	9	74	307	48	288	2.45e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75689.t1	AT1G08490	77.468	466	102	1	1	466	1	463	0.0	732
MS.gene75689.t1	AT5G65720	24.444	450	283	11	20	453	12	420	1.31e-21	97.4
MS.gene75689.t1	AT5G65720	24.444	450	283	11	20	453	12	420	1.31e-21	97.4
MS.gene75689.t1	AT5G65720	23.920	301	188	8	169	453	17	292	3.74e-13	70.9

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Find 119 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGGCATGGAAGAC+AGG	0.487304	3.3:-70464435	None:intergenic
AAAGAGGGAGAACTAAGAGT+TGG	0.613517	3.3:-70462658	None:intergenic
AAATTTAAAACAAGGAGATG+AGG	0.633993	3.3:+70463080	MS.gene75689:CDS
AACCCCTCCATCGGTATTTA+GGG	0.335796	3.3:+70467205	MS.gene75689:CDS
AACCTGTCTTACAGATGTGT+GGG	0.606697	3.3:+70464374	MS.gene75689:intron
AACTCTTAGTTCTCCCTCTT+TGG	0.194746	3.3:+70462660	MS.gene75689:CDS
AAGTATAGGGAAATGGGGTC+TGG	0.471495	3.3:-70462692	None:intergenic
AAGTTCACAAACCTGGACGG+AGG	0.708907	3.3:-70464684	None:intergenic
AATCTAGTAGCTTATTCTTG+GGG	0.557727	3.3:+70463051	MS.gene75689:CDS
AATGATTTCAGATGTATATT+TGG	0.234059	3.3:+70464641	MS.gene75689:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCATTGAAACAATTGG+GGG	-	chr3.3:70464034-70464053	None:intergenic	30.0%
AAAAGTTTCTGTATTCGTAC+TGG	-	chr3.3:70463790-70463809	None:intergenic	30.0%
AAATGACTGTAGGTTATGAA+TGG	-	chr3.3:70465057-70465076	None:intergenic	30.0%
AACAAGAAAATGCATATAGC+TGG	-	chr3.3:70466783-70466802	None:intergenic	30.0%
AAGAGGATAGTAAAGTAAAC+GGG	-	chr3.3:70465382-70465401	None:intergenic	30.0%
AATCTAGTAGCTTATTCTTG+GGG	+	chr3.3:70463051-70463070	MS.gene75689:CDS	30.0%
ACTAGTTGTTCATGTTTGAT+AGG	-	chr3.3:70464499-70464518	None:intergenic	30.0%
AGAAAACTAGAGTAATTCAC+AGG	+	chr3.3:70465312-70465331	MS.gene75689:intron	30.0%
AGAGTTTCCATTTCTTATCT+TGG	+	chr3.3:70464987-70465006	MS.gene75689:intron	30.0%
AGTCCCTTATAGTTGAATAT+TGG	-	chr3.3:70463877-70463896	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	70462514	70467338	70462514	ID=MS.gene75689
chr3.3	mRNA	70462514	70467338	70462514	ID=MS.gene75689.t1;Parent=MS.gene75689
chr3.3	exon	70462514	70462854	70462514	ID=MS.gene75689.t1.exon1;Parent=MS.gene75689.t1
chr3.3	CDS	70462514	70462854	70462514	ID=cds.MS.gene75689.t1;Parent=MS.gene75689.t1
chr3.3	exon	70462942	70463101	70462942	ID=MS.gene75689.t1.exon2;Parent=MS.gene75689.t1
chr3.3	CDS	70462942	70463101	70462942	ID=cds.MS.gene75689.t1;Parent=MS.gene75689.t1
chr3.3	exon	70463437	70463623	70463437	ID=MS.gene75689.t1.exon3;Parent=MS.gene75689.t1
chr3.3	CDS	70463437	70463623	70463437	ID=cds.MS.gene75689.t1;Parent=MS.gene75689.t1
chr3.3	exon	70464161	70464306	70464161	ID=MS.gene75689.t1.exon4;Parent=MS.gene75689.t1
chr3.3	CDS	70464161	70464306	70464161	ID=cds.MS.gene75689.t1;Parent=MS.gene75689.t1
chr3.3	exon	70464388	70464460	70464388	ID=MS.gene75689.t1.exon5;Parent=MS.gene75689.t1
chr3.3	CDS	70464388	70464460	70464388	ID=cds.MS.gene75689.t1;Parent=MS.gene75689.t1
chr3.3	exon	70464631	70464694	70464631	ID=MS.gene75689.t1.exon6;Parent=MS.gene75689.t1
chr3.3	CDS	70464631	70464694	70464631	ID=cds.MS.gene75689.t1;Parent=MS.gene75689.t1
chr3.3	exon	70465181	70465280	70465181	ID=MS.gene75689.t1.exon7;Parent=MS.gene75689.t1
chr3.3	CDS	70465181	70465280	70465181	ID=cds.MS.gene75689.t1;Parent=MS.gene75689.t1
chr3.3	exon	70466599	70466757	70466599	ID=MS.gene75689.t1.exon8;Parent=MS.gene75689.t1
chr3.3	CDS	70466599	70466757	70466599	ID=cds.MS.gene75689.t1;Parent=MS.gene75689.t1
chr3.3	exon	70467168	70467338	70467168	ID=MS.gene75689.t1.exon9;Parent=MS.gene75689.t1
chr3.3	CDS	70467168	70467338	70467168	ID=cds.MS.gene75689.t1;Parent=MS.gene75689.t1

Gene Sequence

>MS.gene75689

ATGGAAGTTTTGCTGCCGAAACTTCCAAGCCCCAGTTATTGCTGTTCAATCACTACCAGAACCACATCACGTGTCAGACTTGGCTTCCGCCGTTTAACTTATCTCCCTGTTCGTGCATCAACCGTCAATCAAGCAGTAGCTGAACCAACTCTTAGTTCTCCCTCTTTGGGCCACACTACCAGACCCCATTTCCCTATACTTCACCAGGAAGTAAATGGCTCAAAACTTGTTTACATAGACAATGCAGCAACGTCTCAGAAGCCTGCAGCTGTTGTGAAGGCATTGCAAGACTATTATGAAGGTTACAATTCAAACGTGCATCGGGGCATACATTACTTGAGGTACTTATTATTGTGTTTGTTAAATTTGGAATTACATTGGTAATTTGGAGGCCAAATGTTTATGTGCACAATTATTTATGGATGTAGTGCAAAGGCCACAGACGAGTATGAATCAGCTAGACGGAAGGTTGCAGCTTTTATAAATGCTTCTGATTCACGAGAAATTGTATTCACAAGAAATGCTACTGAAGCTATCAATCTAGTAGCTTATTCTTGGGGCTTGTCAAATTTAAAACAAGGAGATGAGGTATTTTCTTTCTAGATTTTTTTTAACGAATTTCAACTTGCTGCATGTTTGGATTAGCGTATTTTGGAGAAAATAACAATTATTTTCTGAAAAATAATCCCCATCTAAATTTTTAAACATGATATTGTTTTGTGCATATTTTTAAGATTCGGAGAGTGTTAAGGCTTAATTGAATGTATCAAATGTGATATTGAAATAGGAGTTTTAATACCAGGAGGAGACATTGGGGGTTCTCTTTAATCACCCGGTTGAAGTTCTATTCCTTTATGTTTGGATTGTCATTATCTCCAATAAATATGCTCATGTAAAATCTTAACTTTTGTGTATTATTGCAGATCGTACTTACAGTTGCTGAACATCACAGCGCAATTGTTCCATGGCAATTAGTAGCTCAAAAAGTTGGAGCTGTTTTGAAATTTGTGAATTTAAACCAAGATGAAATTCCAGATATAGATAAATTGAAGGAAATGCTTTCAAAGAAGACAAAAATAGTTGTTGTTCATCATGTTTCAAATGTGCTTGGTATGTTTCTCGTCAGGATTGTACATTTTTGTGAATGATACTTTAAGTTATGCTGTCAAAGATATCTGCCTGCTGGGTTAACTTTATAGGTTTTGACATTAACGGTCTTCTGGTTCATTAGTAACTTTTGCTTGAATCAACGTTGCATCGAGGGTTGAGCACACCAGTACGAATACAGAAACTTTTAGAATAAATTTGTAAACTGATAATTACTTGATAGAGATTACATACACTCATATAAAGAGGATTTCCAATATTCAACTATAAGGGACTGCACTCATGTGAAGACTTCCAACTAGTACTTAGCAAACATGTAATGCCTATGCATATTGAGACCCAATACCCAACGTGACCCTAAAAACATTTAAACTTGGTGCTTATATCATATACATGAATCCTCATTTCAGCCCCCAATTGTTTCAATGGTTTTTCAACTTGTAACCTCTTACTTTCCACAATGATAGTACTTTTACTCACTTTTAAACTTTTAAGTGAAATGAATGAGCTTGCTTGTGTATGTCCTTTGCTTTTCTGTAGCTTCTGTTCTTCCTATTAGAGATATTGCACACTGGGCACATGGGGTTGGAGCAAAAGTTCTTGTAGATGCCTGCCAGAGTGTTCCACACATGGTGGTTGATGTTCAAAACCTTGATGCTGATTTTCTTGTTGCTTCTTCTCACAAGGTAGAGCTGTTCATGTATTTTTGAATTGTAACTCTTCCAGATTCCAGACCAGTGTAACAAGTTACTGAACCTGTCTTACAGATGTGTGGGCCTACAGGCATTGGATTCTTATATGGTAAAATGGACCTCCTGTCTTCCATGCCTCCATTTTTAGGTAAGTTATTATACACGGTGCTTTACTATTATTTTCCTATCAAACATGAACAACTAGTTAAAATGGCAATAGAATAAAAGAAAAAATCCTGTTTGTTTAGGCACCATGTTAATAAGATTTTGTTTTGTAGCTAATACATTTCCGGCAACCTCATCTTTTGCTTGTTTCAGGCGGTGGTGAAATGATTTCAGATGTATATTTGGATCATTCAACTTATGCCGAACCTCCGTCCAGGTTTGTGAACTTTTTTTTCTTTAACTCGAGCATACCTTATCTTAAAAATGATATACATTGGCTTGGGTGGAGGTCACGGGTTTGATTCCCTGTGTAGGAAAGAAAGCTGAAGAGGATCAATGGATTTACTTCTTTTGAATTAGTGCAAACATAATTTCTTCGTTTCTCCTTCACTTCCTCTGGCTCTTGATGTTAGTCATTGGTATTTTGAACCCCATAGGATTCTATAACCAAAAAATTATTCGATCTACCATTTAAATGATCGTTGTCAATATCAGCCGGGGAAAAAGGAAGAGTTTCCATTTCTTATCTTGGGACTGATACTCTGGTGGTTCACACCTTTTCTAAATTTAATATAACCATTCATAACCTACAGTCATTTTTCTCCGCCTCACAGTGCTAATTTTTTGCTACTACTGTCGCATTTACCATCAATTACTTGTATTGTATCTTATTATTATATCTGAGGCTATTTTACCATACTAGATTTGAGGCTGGAACACCAGCTATTGGTGAAGCAATTGGATTAGGAGCAGCAATTGATTACTTGTCTGGGATTGGGATGCAAGCCATACATGAGTATGAGGTGAGTTGACCTTCAGTCTTATTGACTATAAAGAAAACTAGAGTAATTCACAGGAAAAGTGATACATTAATTTTTTAAATTTAAGATACTGTGAAAAACCCGTTTACTTTACTATCCTCTTCTGTGGTGACATCTCATTTAACAAGTTTTTGACAATGAAATATTATGTATATATGTGCATACATATGTGTTTTAACAAGTTTGTGATAACACAACACCTCGTTATGATTTAGTTGATTTCTCCTCAAATGCCATACCTTCTGTAGATGCTGAAGCTTTTTCTCCTTCATGGGTATCATCTTTTGAAAATCTGGAATTCCAATTTGCTTAACCATCTAATGACAATAAAGCCAAGCACTTAATGTATTGATTGCATATTCATGCAGTTGAGTCACTTCCAGGACATATCCGAGAGCCAAACACCCTGTGGTTTATTCTTGTATTTAAGTTTAACTGATAGCAAAGTGTCGAAATGCAAGATTCACTTCTAATCATTTGGGAGCTGTGGAAAGCAACATTCTACAAAACACATGTTACATAAAAACATTCTAACTGAAAAAACATTCTAACTGAAATTAAGCACTAAAGTTAATCATAAATACTTTTGTTGATTAAATGTACATCTAAGTAGTATGTAGTGTTAATTACCAAAATAACTTGTAGTTAAGCTTTGATAAATGCTACTGATCAGATTTTAATGCTCCGACAATGTTTAACTTGATCAGAACATGAAAAAAACAATTTAACTTGCAAAAGAAAAAGCTGAATGTGTCACAATGCTTTATTTCCATTTTGTCATCCTGATTGTTGTTTTACTTCTTCAAGTACATCTTCTCTTTATCATCACAATTTTCATGATTCGATGCCTCAACCTCATTAATGTATATTCAAAGCAATGCTATCCTAGTCTCTGTGCCCTTCAATGTTATCGTTATAATTGAAACCACTAGCTAAATTAATGATTTTCAATCTACTCAATCAATGACTTGTAATAAATACACTGTTATTTTTGTTTGCTCATCAACAAAATCAGTTTTCATACAGAGGATTGCTTGGAACACTGTTTTTTAACTCACTCTCTAACACTCACTTTCTTATTAGGTGAAAACAATGTAGGTCCTACTACTTTATGTGGGACCCATTTTCAAAGTGCTGGACCTACATTGATTTAACCCAACAAGAGAATAAGTGTTAGAGAGAATGTTAGAAAGAAAGTATTTCTAGAACTACTCTTTCATATATTTGATTAGTGATATAAATTATATTCATGTTCTACGAACTGTGTGATGCTATTTGTATGACATCCAAATTTTCATAGGTCGAGCTGGGTACATACCTGTATGAAAGGCTTCTGTCAGTCCCAAATATTCGCATCTATGGGCCAGCCCCTTCGAAAGAAGTCAAACGAGCTTCTCTTTGTTCTTTCAATGTTGAGAATTTGCACCCTACTGATCTTGCAACATTTCTGGACCAACAGGTAAGAAGATGAAATACTATCTCCAGCTATATGCATTTTCTTGTTCTTAATACATTTTATGTTGCATTTGAGTAAACAATTTTTTATGAAAAAGGTTTGAATGAACAATTAGTTAAGTACTTATCCTTTAAGTTATTCTAGAGAAATGATTACGCACTTATTCATAAACTTTTATATAGGAATAAGTTAAAAACAACCCATGGACATGTCATTAGTTAATTTTTATAAGTGTATCTAATCATTAATACAAGTGTCTATGTCATGAAATAAGGTAAATTAAGTTTTTTCAAATACCTTCTTAGTCTGTAATCAATTACTAAATTGCCCAAATTTTCGGTAGTAATTGGAATAGCTGTTGAACTTGGTTGGAAATTTTCCTTTCTTGAATTTTGATGATGTATCATTTTCAGCATGGAGTGGCAATCAGATCAGGTCACCATTGTGCCCAACCCCTCCATCGGTATTTAGGGGTCAATGCAAGCGCACGTGCTAGCCTCTATTTCTACAACACTAAGGAGGATGTCGACAACTTTATCCATGCCCTTCATGACACGGTCAACTTCTTCAATTCATTCAAGTAG

Protein sequence

>MS.gene75689.t1

MEVLLPKLPSPSYCCSITTRTTSRVRLGFRRLTYLPVRASTVNQAVAEPTLSSPSLGHTTRPHFPILHQEVNGSKLVYIDNAATSQKPAAVVKALQDYYEGYNSNVHRGIHYLSAKATDEYESARRKVAAFINASDSREIVFTRNATEAINLVAYSWGLSNLKQGDEIVLTVAEHHSAIVPWQLVAQKVGAVLKFVNLNQDEIPDIDKLKEMLSKKTKIVVVHHVSNVLASVLPIRDIAHWAHGVGAKVLVDACQSVPHMVVDVQNLDADFLVASSHKMCGPTGIGFLYGKMDLLSSMPPFLGGGEMISDVYLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQAIHEYEVELGTYLYERLLSVPNIRIYGPAPSKEVKRASLCSFNVENLHPTDLATFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEDVDNFIHALHDTVNFFNSFK