Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77785.t1 | XP_003628184.1 | 96.8 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 2.90E-83 | 317.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77785.t1 | Q9SSK9 | 32.2 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 6.8e-17 | 88.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77785.t1 | B7FMF6 | 96.8 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 2.1e-83 | 317.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049272 | MS.gene77785 | 0.80582 | 1.11E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene77785 | 0.803358 | 3.62E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene77785 | 0.81325 | 2.82E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene77785 | 0.811426 | 7.04E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene77785 | 0.821375 | 4.17E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene77785 | 0.80924 | 2.09E-50 | -1.69E-46 |
| MS.gene050137 | MS.gene77785 | 0.801267 | 9.76E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene77785 | 0.80356 | 3.29E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene77785 | 0.815123 | 1.09E-51 | -1.69E-46 |
| MS.gene050787 | MS.gene77785 | 0.832608 | 8.58E-56 | -1.69E-46 |
| MS.gene050807 | MS.gene77785 | 0.828252 | 9.97E-55 | -1.69E-46 |
| MS.gene050844 | MS.gene77785 | 0.809063 | 2.28E-50 | -1.69E-46 |
| MS.gene050959 | MS.gene77785 | 0.820186 | 7.84E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene77785 | 0.828843 | 7.17E-55 | -1.69E-46 |
| MS.gene051265 | MS.gene77785 | 0.818444 | 1.95E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene77785 | 0.817645 | 2.96E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene77785 | 0.857325 | 1.76E-62 | -1.69E-46 |
| MS.gene051720 | MS.gene77785 | 0.840822 | 6.90E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene77785 | 0.8157 | 8.08E-52 | -1.69E-46 |
| MS.gene052020 | MS.gene77785 | 0.819355 | 1.21E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene77785 | 0.801773 | 7.68E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene77785 | 0.801895 | 7.26E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene77785 | 0.81013 | 1.34E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene77785 | 0.809193 | 2.14E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene77785 | 0.807921 | 3.99E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene77785 | 0.801115 | 1.05E-48 | -1.69E-46 |
| MS.gene052613 | MS.gene77785 | 0.826649 | 2.42E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene77785 | 0.809097 | 2.24E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene77785 | 0.818551 | 1.85E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene77785 | 0.824724 | 6.91E-54 | -1.69E-46 |
| MS.gene053221 | MS.gene77785 | 0.846715 | 1.82E-59 | -1.69E-46 |
| MS.gene053226 | MS.gene77785 | 0.810413 | 1.17E-50 | -1.69E-46 |
| MS.gene053883 | MS.gene77785 | 0.813438 | 2.56E-51 | -1.69E-46 |
| MS.gene053966 | MS.gene77785 | 0.807846 | 4.14E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene77785 | 0.801968 | 7.01E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene77785 | -0.831626 | 1.50E-55 | -1.69E-46 |
| MS.gene054467 | MS.gene77785 | 0.822446 | 2.36E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene77785 | 0.816857 | 4.46E-52 | -1.69E-46 |
| MS.gene05462 | MS.gene77785 | 0.81774 | 2.82E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene77785 | 0.806262 | 8.96E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene77785 | 0.821256 | 4.45E-53 | -1.69E-46 |
| MS.gene055357 | MS.gene77785 | 0.805573 | 1.25E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene77785 | 0.845511 | 3.88E-59 | -1.69E-46 |
| MS.gene055465 | MS.gene77785 | 0.86402 | 1.64E-64 | -1.69E-46 |
| MS.gene055466 | MS.gene77785 | 0.869023 | 4.22E-66 | -1.69E-46 |
| MS.gene055468 | MS.gene77785 | 0.858853 | 6.19E-63 | -1.69E-46 |
| MS.gene055608 | MS.gene77785 | 0.811208 | 7.85E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene77785 | 0.831798 | 1.36E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene77785 | 0.812204 | 4.77E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene77785 | 0.811001 | 8.71E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene77785 | 0.806597 | 7.61E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene77785 | -0.810148 | 1.33E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene77785 | 0.809672 | 1.69E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene77785 | 0.815683 | 8.16E-52 | -1.69E-46 |
| MS.gene057314 | MS.gene77785 | 0.808598 | 2.86E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene77785 | 0.812524 | 4.06E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene77785 | 0.816291 | 5.97E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene77785 | 0.83766 | 4.56E-57 | -1.69E-46 |
| MS.gene058084 | MS.gene77785 | 0.80837 | 3.20E-50 | -1.69E-46 |
| MS.gene058087 | MS.gene77785 | 0.803966 | 2.71E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene77785 | 0.831618 | 1.51E-55 | -1.69E-46 |
| MS.gene058636 | MS.gene77785 | 0.816533 | 5.26E-52 | -1.69E-46 |
| MS.gene058829 | MS.gene77785 | 0.822693 | 2.07E-53 | -1.69E-46 |
| MS.gene059272 | MS.gene77785 | 0.809977 | 1.45E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene77785 | 0.822426 | 2.38E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene77785 | 0.809372 | 1.95E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene77785 | 0.800333 | 1.51E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene77785 | 0.824178 | 9.29E-54 | -1.69E-46 |
| MS.gene060553 | MS.gene77785 | 0.84828 | 6.78E-60 | -1.69E-46 |
| MS.gene060587 | MS.gene77785 | 0.807343 | 5.29E-50 | -1.69E-46 |
| MS.gene060781 | MS.gene77785 | 0.807258 | 5.52E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene77785 | 0.824143 | 9.47E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene77785 | -0.8233 | 1.49E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77785.t1 | MTR_8g045300 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 1.48e-111 | 313 |
| MS.gene77785.t1 | MTR_8g045520 | 75.641 | 156 | 38 | 0 | 1 | 156 | 1 | 156 | 4.01e-86 | 249 |
| MS.gene77785.t1 | MTR_8g045490 | 70.513 | 156 | 45 | 1 | 1 | 156 | 1 | 155 | 1.16e-82 | 240 |
| MS.gene77785.t1 | MTR_8g045570 | 71.523 | 151 | 43 | 0 | 1 | 151 | 1 | 151 | 1.39e-81 | 238 |
| MS.gene77785.t1 | MTR_8g045400 | 69.231 | 156 | 47 | 1 | 1 | 156 | 1 | 155 | 3.86e-79 | 231 |
| MS.gene77785.t1 | MTR_8g045555 | 68.874 | 151 | 47 | 0 | 1 | 151 | 1 | 151 | 7.94e-78 | 228 |
| MS.gene77785.t1 | MTR_8g045695 | 66.026 | 156 | 52 | 1 | 1 | 156 | 1 | 155 | 7.12e-77 | 226 |
| MS.gene77785.t1 | MTR_8g045735 | 66.452 | 155 | 51 | 1 | 1 | 155 | 1 | 154 | 8.10e-75 | 221 |
| MS.gene77785.t1 | MTR_8g045640 | 63.462 | 156 | 56 | 1 | 1 | 156 | 1 | 155 | 4.64e-71 | 211 |
| MS.gene77785.t1 | MTR_8g045665 | 63.462 | 156 | 56 | 1 | 1 | 156 | 1 | 155 | 7.94e-71 | 210 |
| MS.gene77785.t1 | MTR_8g045560 | 62.821 | 156 | 57 | 1 | 1 | 156 | 1 | 155 | 4.63e-70 | 208 |
| MS.gene77785.t1 | MTR_1g030810 | 42.208 | 154 | 86 | 2 | 1 | 152 | 1 | 153 | 8.29e-38 | 127 |
| MS.gene77785.t1 | MTR_1g030820 | 39.610 | 154 | 90 | 2 | 1 | 152 | 1 | 153 | 3.24e-36 | 122 |
| MS.gene77785.t1 | MTR_8g012550 | 32.667 | 150 | 98 | 3 | 6 | 154 | 8 | 155 | 6.61e-26 | 96.7 |
| MS.gene77785.t1 | MTR_1g030840 | 32.692 | 156 | 97 | 4 | 1 | 149 | 1 | 155 | 1.50e-21 | 85.5 |
| MS.gene77785.t1 | MTR_1g031640 | 34.694 | 147 | 87 | 5 | 7 | 151 | 7 | 146 | 8.10e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77785.t1 | AT5G28010 | 32.895 | 152 | 99 | 3 | 3 | 152 | 15 | 165 | 1.21e-22 | 88.6 |
| MS.gene77785.t1 | AT5G28010 | 32.895 | 152 | 99 | 3 | 3 | 152 | 15 | 165 | 1.21e-22 | 88.6 |
| MS.gene77785.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 7.23e-22 | 86.7 |
| MS.gene77785.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 1.50e-21 | 86.7 |
| MS.gene77785.t1 | AT1G70840 | 31.579 | 152 | 101 | 3 | 3 | 152 | 20 | 170 | 4.26e-21 | 84.7 |
| MS.gene77785.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 4.30e-21 | 86.7 |
| MS.gene77785.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 1.25e-20 | 86.7 |
| MS.gene77785.t1 | AT1G70830 | 30.921 | 152 | 102 | 3 | 3 | 152 | 184 | 334 | 3.91e-19 | 82.4 |
| MS.gene77785.t1 | AT1G70890 | 30.921 | 152 | 102 | 3 | 3 | 152 | 7 | 157 | 2.25e-20 | 82.4 |
| MS.gene77785.t1 | AT1G70830 | 30.921 | 152 | 102 | 3 | 3 | 152 | 137 | 287 | 1.85e-19 | 82.8 |
| MS.gene77785.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 4.25e-19 | 80.9 |
| MS.gene77785.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 1.01e-18 | 81.3 |
| MS.gene77785.t1 | AT1G70850 | 30.986 | 142 | 95 | 3 | 13 | 152 | 175 | 315 | 1.31e-17 | 78.2 |
| MS.gene77785.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 1.01e-18 | 81.3 |
| MS.gene77785.t1 | AT1G70850 | 30.986 | 142 | 95 | 3 | 13 | 152 | 175 | 315 | 1.31e-17 | 78.2 |
| MS.gene77785.t1 | AT1G23120 | 28.105 | 153 | 105 | 3 | 1 | 153 | 1 | 148 | 1.93e-18 | 77.0 |
| MS.gene77785.t1 | AT1G23120 | 28.758 | 153 | 102 | 4 | 3 | 153 | 51 | 198 | 1.13e-17 | 76.3 |
| MS.gene77785.t1 | AT1G23130 | 27.152 | 151 | 108 | 2 | 3 | 152 | 10 | 159 | 5.89e-17 | 73.6 |
| MS.gene77785.t1 | AT5G28000 | 28.947 | 152 | 105 | 3 | 3 | 152 | 13 | 163 | 1.64e-16 | 72.4 |
| MS.gene77785.t1 | AT1G70870 | 32.450 | 151 | 89 | 4 | 1 | 151 | 1 | 138 | 1.68e-16 | 72.0 |
| MS.gene77785.t1 | AT4G23670 | 29.605 | 152 | 104 | 3 | 1 | 151 | 1 | 150 | 5.89e-16 | 70.9 |
| MS.gene77785.t1 | AT1G70880 | 25.658 | 152 | 110 | 3 | 3 | 152 | 8 | 158 | 3.15e-15 | 68.9 |
| MS.gene77785.t1 | AT1G24020 | 29.870 | 154 | 104 | 3 | 1 | 152 | 1 | 152 | 4.72e-15 | 68.6 |
| MS.gene77785.t1 | AT1G24020 | 29.870 | 154 | 104 | 3 | 1 | 152 | 1 | 152 | 4.72e-15 | 68.6 |
| MS.gene77785.t1 | AT2G01520 | 27.632 | 152 | 107 | 3 | 1 | 151 | 1 | 150 | 1.38e-14 | 67.4 |
| MS.gene77785.t1 | AT1G14930 | 26.974 | 152 | 108 | 3 | 1 | 151 | 1 | 150 | 6.63e-14 | 65.5 |
| MS.gene77785.t1 | AT2G01530 | 28.289 | 152 | 106 | 3 | 1 | 151 | 1 | 150 | 1.68e-13 | 64.3 |
| MS.gene77785.t1 | AT1G35260 | 27.517 | 149 | 98 | 4 | 7 | 150 | 6 | 149 | 6.35e-13 | 62.8 |
| MS.gene77785.t1 | AT1G35310 | 26.761 | 142 | 101 | 3 | 13 | 153 | 12 | 151 | 9.69e-13 | 62.4 |
| MS.gene77785.t1 | AT4G14060 | 26.974 | 152 | 108 | 3 | 1 | 151 | 1 | 150 | 1.25e-12 | 62.0 |
| MS.gene77785.t1 | AT4G23680 | 25.658 | 152 | 110 | 3 | 1 | 151 | 1 | 150 | 2.55e-12 | 61.2 |
| MS.gene77785.t1 | AT1G30990 | 27.815 | 151 | 105 | 4 | 1 | 150 | 1 | 148 | 1.19e-11 | 59.7 |
| MS.gene77785.t1 | AT1G14940 | 26.490 | 151 | 108 | 3 | 1 | 150 | 1 | 149 | 1.41e-11 | 59.3 |
Find 21 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAAACTTAGCACTGAAAT+TGG | 0.239596 | 8.1:+60161215 | MS.gene77785:CDS |
| AGGTATTCCATCCAACTATT+TGG | 0.260874 | 8.1:-60162604 | None:intergenic |
| ATGGCACTACTGCAGTTAAA+TGG | 0.307509 | 8.1:+60162542 | MS.gene77785:CDS |
| TTCATCACCTTGATGCAGCT+TGG | 0.437287 | 8.1:-60161324 | None:intergenic |
| GTAAACTTAGCACTGAAATT+GGG | 0.446714 | 8.1:+60161216 | MS.gene77785:CDS |
| AGAAATTGATGAGCACTATA+AGG | 0.468901 | 8.1:+60162483 | MS.gene77785:CDS |
| AAAATCGTCCACAAGATCTT+CGG | 0.479675 | 8.1:+60162457 | MS.gene77785:CDS |
| TATTCCATCCAACTATTTGG+AGG | 0.505271 | 8.1:-60162601 | None:intergenic |
| AGCTGCATCAAGGTGATGAA+TGG | 0.510022 | 8.1:+60161327 | MS.gene77785:CDS |
| TTTCTTCACCGAAGATCTTG+TGG | 0.512241 | 8.1:-60162465 | None:intergenic |
| CATCATTGAAGTGATTGATA+AGG | 0.521648 | 8.1:+60162516 | MS.gene77785:CDS |
| ATGTTGAACCTCCAAATAGT+TGG | 0.544310 | 8.1:+60162593 | MS.gene77785:CDS |
| CGATTTCACAACAGAGGGCA+AGG | 0.552186 | 8.1:+60162387 | MS.gene77785:intron |
| CATGAAACCAAGCTGCATCA+AGG | 0.562710 | 8.1:+60161317 | MS.gene77785:CDS |
| TGAACCTCCAAATAGTTGGA+TGG | 0.602941 | 8.1:+60162597 | MS.gene77785:CDS |
| TGTCTCGAGTGCATTTGCTA+AGG | 0.617854 | 8.1:-60162624 | None:intergenic |
| ACTCTGATTCAGTTAAACAC+TGG | 0.620261 | 8.1:+60161354 | MS.gene77785:CDS |
| TAGTTTGAAGAACTTGTCAG+AGG | 0.640528 | 8.1:-60161249 | None:intergenic |
| TCATCTTGTCAAGCAAGCAA+AGG | 0.651550 | 8.1:+60162654 | MS.gene77785:CDS |
| GAAGTGATTGATAAGGCTGA+TGG | 0.663192 | 8.1:+60162523 | MS.gene77785:CDS |
| AAACACTGGACTCATGTCCG+AGG | 0.721608 | 8.1:+60161368 | MS.gene77785:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCCAATAAAAATTAAAA+CGG | - | chr8.1:60162358-60162377 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTAAGAAAAAAT+TGG | + | chr8.1:60162262-60162281 | MS.gene77785:intron | 10.0% |
| !!! | TTGTTTACAATTTTTTTTTT+GGG | + | chr8.1:60162196-60162215 | MS.gene77785:intron | 10.0% |
| !!! | TTTGTTTACAATTTTTTTTT+TGG | + | chr8.1:60162195-60162214 | MS.gene77785:intron | 10.0% |
| !! | AATAACATATTGCAAAATTT+GGG | + | chr8.1:60161607-60161626 | MS.gene77785:intron | 15.0% |
| !! | AGTATAATTATAGAAACATA+TGG | - | chr8.1:60162291-60162310 | None:intergenic | 15.0% |
| !! | ATCATCATGATATATAAAAT+TGG | + | chr8.1:60162083-60162102 | MS.gene77785:intron | 15.0% |
| !! | ATTAGAAATATAATTTACCT+CGG | - | chr8.1:60161388-60161407 | None:intergenic | 15.0% |
| !!! | AGATGAATATTTTAATTGAA+CGG | + | chr8.1:60161966-60161985 | MS.gene77785:intron | 15.0% |
| !!! | ATAACCGTTTTAATTTTTAT+TGG | + | chr8.1:60162351-60162370 | MS.gene77785:intron | 15.0% |
| !!! | ATAATTTAAAACTATTTGGT+TGG | - | chr8.1:60162155-60162174 | None:intergenic | 15.0% |
| !!! | GTCATCTAATTTTAATTTAA+TGG | - | chr8.1:60161877-60161896 | None:intergenic | 15.0% |
| !!! | TGTTTACAATTTTTTTTTTG+GGG | + | chr8.1:60162197-60162216 | MS.gene77785:intron | 15.0% |
| !! | AACCAATCAACAATTAATAA+TGG | + | chr8.1:60161797-60161816 | MS.gene77785:intron | 20.0% |
| !! | ATTCAAGATCAATATCAATA+TGG | - | chr8.1:60161739-60161758 | None:intergenic | 20.0% |
| !! | CAATAACATATTGCAAAATT+TGG | + | chr8.1:60161606-60161625 | MS.gene77785:intron | 20.0% |
| !! | GATCTAAGTAAAAGATATAA+AGG | + | chr8.1:60161694-60161713 | MS.gene77785:intron | 20.0% |
| !! | TAAAAATATGACAGATCTAA+AGG | + | chr8.1:60161658-60161677 | MS.gene77785:intron | 20.0% |
| !! | TTCCATTATTAATTGTTGAT+TGG | - | chr8.1:60161802-60161821 | None:intergenic | 20.0% |
| !!! | GACATCTTTAAATTTCATTT+TGG | + | chr8.1:60161537-60161556 | MS.gene77785:intron | 20.0% |
| !!! | TATAAAATTGGTTGATTTGA+TGG | + | chr8.1:60162095-60162114 | MS.gene77785:intron | 20.0% |
| !!! | TTTAGATCTGTCATATTTTT+AGG | - | chr8.1:60161659-60161678 | None:intergenic | 20.0% |
| !!! | TTTTAATTTAATGGTCAGTA+AGG | - | chr8.1:60161868-60161887 | None:intergenic | 20.0% |
| ! | ATGTACAAGTACAACTATAA+AGG | + | chr8.1:60161995-60162014 | MS.gene77785:intron | 25.0% |
| ! | ATTTCTAATAACACTAACAC+TGG | + | chr8.1:60161399-60161418 | MS.gene77785:intron | 25.0% |
| !! | ACTGGATTTATGTTCTATTT+TGG | + | chr8.1:60161417-60161436 | MS.gene77785:intron | 25.0% |
| !!! | TTGTCTTCTGATTTTTAACT+TGG | + | chr8.1:60161464-60161483 | MS.gene77785:intron | 25.0% |
| AGAAATTGATGAGCACTATA+AGG | + | chr8.1:60162483-60162502 | MS.gene77785:CDS | 30.0% | |
| CATCATTGAAGTGATTGATA+AGG | + | chr8.1:60162516-60162535 | MS.gene77785:CDS | 30.0% | |
| ! | GTAAACTTAGCACTGAAATT+GGG | + | chr8.1:60161216-60161235 | MS.gene77785:CDS | 30.0% |
| ! | TTGATTTGATGGTTGGAATA+GGG | + | chr8.1:60162106-60162125 | MS.gene77785:intron | 30.0% |
| !! | AAACTATTTGGTTGGCTTTA+AGG | - | chr8.1:60162147-60162166 | None:intergenic | 30.0% |
| !! | AAATTGGTTGATTTGATGGT+TGG | + | chr8.1:60162099-60162118 | MS.gene77785:intron | 30.0% |
| !! | GCTTTAAGGATCTCTAATTT+AGG | - | chr8.1:60162133-60162152 | None:intergenic | 30.0% |
| AAAATCGTCCACAAGATCTT+CGG | + | chr8.1:60162457-60162476 | MS.gene77785:CDS | 35.0% | |
| ACAAGATATAGCAAAAGCGA+TGG | + | chr8.1:60161821-60161840 | MS.gene77785:intron | 35.0% | |
| ACTCTGATTCAGTTAAACAC+TGG | + | chr8.1:60161354-60161373 | MS.gene77785:CDS | 35.0% | |
| AGGTATTCCATCCAACTATT+TGG | - | chr8.1:60162607-60162626 | None:intergenic | 35.0% | |
| ATGTTGAACCTCCAAATAGT+TGG | + | chr8.1:60162593-60162612 | MS.gene77785:CDS | 35.0% | |
| TAGTTTGAAGAACTTGTCAG+AGG | - | chr8.1:60161252-60161271 | None:intergenic | 35.0% | |
| TATTCCATCCAACTATTTGG+AGG | - | chr8.1:60162604-60162623 | None:intergenic | 35.0% | |
| ! | ATAGCAAAAGCGATGGATTT+AGG | + | chr8.1:60161828-60161847 | MS.gene77785:intron | 35.0% |
| ! | GGTAAACTTAGCACTGAAAT+TGG | + | chr8.1:60161215-60161234 | MS.gene77785:CDS | 35.0% |
| ! | TGATTTGATGGTTGGAATAG+GGG | + | chr8.1:60162107-60162126 | MS.gene77785:intron | 35.0% |
| !! | GTTGATTTGATGGTTGGAAT+AGG | + | chr8.1:60162105-60162124 | MS.gene77785:intron | 35.0% |
| ACCTTCGATTTCACAACAGA+GGG | + | chr8.1:60162382-60162401 | MS.gene77785:intron | 40.0% | |
| ATGGCACTACTGCAGTTAAA+TGG | + | chr8.1:60162542-60162561 | MS.gene77785:CDS | 40.0% | |
| GAAGTGATTGATAAGGCTGA+TGG | + | chr8.1:60162523-60162542 | MS.gene77785:CDS | 40.0% | |
| TACCTTCGATTTCACAACAG+AGG | + | chr8.1:60162381-60162400 | MS.gene77785:intron | 40.0% | |
| TCATCTTGTCAAGCAAGCAA+AGG | + | chr8.1:60162654-60162673 | MS.gene77785:CDS | 40.0% | |
| TGAACCTCCAAATAGTTGGA+TGG | + | chr8.1:60162597-60162616 | MS.gene77785:CDS | 40.0% | |
| TTTCTTCACCGAAGATCTTG+TGG | - | chr8.1:60162468-60162487 | None:intergenic | 40.0% | |
| AGCTGCATCAAGGTGATGAA+TGG | + | chr8.1:60161327-60161346 | MS.gene77785:CDS | 45.0% | |
| CATGAAACCAAGCTGCATCA+AGG | + | chr8.1:60161317-60161336 | MS.gene77785:CDS | 45.0% | |
| TTCATCACCTTGATGCAGCT+TGG | - | chr8.1:60161327-60161346 | None:intergenic | 45.0% | |
| ! | TGTCTCGAGTGCATTTGCTA+AGG | - | chr8.1:60162627-60162646 | None:intergenic | 45.0% |
| !!! | AATAATAATTTAAAACTATT+TGG | - | chr8.1:60162159-60162178 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTAAGAAAAAATT+GGG | + | chr8.1:60162263-60162282 | MS.gene77785:intron | 5.0% |
| AAACACTGGACTCATGTCCG+AGG | + | chr8.1:60161368-60161387 | MS.gene77785:CDS | 50.0% | |
| CGATTTCACAACAGAGGGCA+AGG | + | chr8.1:60162387-60162406 | MS.gene77785:intron | 50.0% | |
| GCCCTCTGTTGTGAAATCGA+AGG | - | chr8.1:60162386-60162405 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 60161203 | 60162687 | 60161203 | ID=MS.gene77785 |
| chr8.1 | mRNA | 60161203 | 60162687 | 60161203 | ID=MS.gene77785.t1;Parent=MS.gene77785 |
| chr8.1 | exon | 60161203 | 60161389 | 60161203 | ID=MS.gene77785.t1.exon1;Parent=MS.gene77785.t1 |
| chr8.1 | CDS | 60161203 | 60161389 | 60161203 | ID=cds.MS.gene77785.t1;Parent=MS.gene77785.t1 |
| chr8.1 | exon | 60162401 | 60162687 | 60162401 | ID=MS.gene77785.t1.exon2;Parent=MS.gene77785.t1 |
| chr8.1 | CDS | 60162401 | 60162687 | 60162401 | ID=cds.MS.gene77785.t1;Parent=MS.gene77785.t1 |
| Gene Sequence |
| Protein sequence |
