Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78652.t1 | XP_024638802.1 | 91.2 | 261 | 20 | 1 | 1 | 258 | 131 | 391 | 1.00E-138 | 502.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78652.t1 | Q9SVY1 | 92.5 | 187 | 11 | 1 | 75 | 258 | 197 | 383 | 8.9e-107 | 387.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78652.t1 | A0A396JLH8 | 91.2 | 261 | 20 | 1 | 1 | 258 | 131 | 391 | 7.5e-139 | 502.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene78652.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene78652 | 0.83385 | 4.21E-56 | -1.69E-46 |
| MS.gene049350 | MS.gene78652 | 0.844446 | 7.52E-59 | -1.69E-46 |
| MS.gene049404 | MS.gene78652 | 0.805525 | 1.28E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene78652 | 0.817008 | 4.12E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene78652 | 0.807334 | 5.32E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene78652 | 0.844306 | 8.20E-59 | -1.69E-46 |
| MS.gene050020 | MS.gene78652 | 0.808127 | 3.61E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene78652 | 0.81508 | 1.11E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene78652 | 0.828259 | 9.93E-55 | -1.69E-46 |
| MS.gene050808 | MS.gene78652 | 0.80912 | 2.21E-50 | -1.69E-46 |
| MS.gene050901 | MS.gene78652 | 0.811349 | 7.32E-51 | -1.69E-46 |
| MS.gene051018 | MS.gene78652 | 0.824541 | 7.63E-54 | -1.69E-46 |
| MS.gene051180 | MS.gene78652 | 0.811172 | 8.00E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene78652 | 0.844712 | 6.38E-59 | -1.69E-46 |
| MS.gene051279 | MS.gene78652 | 0.834697 | 2.58E-56 | -1.69E-46 |
| MS.gene051388 | MS.gene78652 | 0.806143 | 9.49E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene78652 | 0.821735 | 3.45E-53 | -1.69E-46 |
| MS.gene051664 | MS.gene78652 | 0.81779 | 2.75E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene78652 | 0.81884 | 1.59E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene78652 | 0.880068 | 7.44E-70 | -1.69E-46 |
| MS.gene051720 | MS.gene78652 | 0.873865 | 1.06E-67 | -1.69E-46 |
| MS.gene051744 | MS.gene78652 | 0.809787 | 1.59E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene78652 | 0.809059 | 2.28E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene78652 | 0.801791 | 7.62E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene78652 | 0.84132 | 5.11E-58 | -1.69E-46 |
| MS.gene052519 | MS.gene78652 | 0.809556 | 1.78E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene78652 | 0.827769 | 1.30E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene78652 | 0.841042 | 6.04E-58 | -1.69E-46 |
| MS.gene052611 | MS.gene78652 | 0.809221 | 2.11E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene78652 | 0.835914 | 1.27E-56 | -1.69E-46 |
| MS.gene052673 | MS.gene78652 | -0.812274 | 4.60E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene78652 | 0.815588 | 8.56E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene78652 | 0.817048 | 4.04E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene78652 | 0.800952 | 1.13E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene78652 | 0.803355 | 3.63E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene78652 | 0.80098 | 1.12E-48 | -1.69E-46 |
| MS.gene053144 | MS.gene78652 | 0.825385 | 4.83E-54 | -1.69E-46 |
| MS.gene053221 | MS.gene78652 | 0.824047 | 9.97E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene78652 | 0.852498 | 4.44E-61 | -1.69E-46 |
| MS.gene053563 | MS.gene78652 | 0.813088 | 3.05E-51 | -1.69E-46 |
| MS.gene053599 | MS.gene78652 | 0.832324 | 1.01E-55 | -1.69E-46 |
| MS.gene05364 | MS.gene78652 | 0.813829 | 2.10E-51 | -1.69E-46 |
| MS.gene054139 | MS.gene78652 | 0.805366 | 1.38E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene78652 | 0.801454 | 8.94E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene78652 | 0.826504 | 2.62E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene78652 | 0.821317 | 4.31E-53 | -1.69E-46 |
| MS.gene054775 | MS.gene78652 | 0.807348 | 5.28E-50 | -1.69E-46 |
| MS.gene054991 | MS.gene78652 | 0.816966 | 4.21E-52 | -1.69E-46 |
| MS.gene055144 | MS.gene78652 | 0.810351 | 1.20E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene78652 | 0.804632 | 1.97E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene78652 | 0.842811 | 2.06E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene78652 | 0.846052 | 2.77E-59 | -1.69E-46 |
| MS.gene055468 | MS.gene78652 | 0.831789 | 1.37E-55 | -1.69E-46 |
| MS.gene055469 | MS.gene78652 | 0.812557 | 3.99E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene78652 | 0.821497 | 3.91E-53 | -1.69E-46 |
| MS.gene055537 | MS.gene78652 | 0.829073 | 6.31E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene78652 | -0.81176 | 5.96E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene78652 | 0.801496 | 8.76E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene78652 | 0.826172 | 3.14E-54 | -1.69E-46 |
| MS.gene055926 | MS.gene78652 | 0.819528 | 1.11E-52 | -1.69E-46 |
| MS.gene056005 | MS.gene78652 | 0.822104 | 2.83E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene78652 | 0.84966 | 2.80E-60 | -1.69E-46 |
| MS.gene056050 | MS.gene78652 | 0.837481 | 5.07E-57 | -1.69E-46 |
| MS.gene056173 | MS.gene78652 | 0.843218 | 1.60E-58 | -1.69E-46 |
| MS.gene056308 | MS.gene78652 | 0.846935 | 1.59E-59 | -1.69E-46 |
| MS.gene056366 | MS.gene78652 | 0.838949 | 2.12E-57 | -1.69E-46 |
| MS.gene056507 | MS.gene78652 | 0.800115 | 1.68E-48 | -1.69E-46 |
| MS.gene056553 | MS.gene78652 | 0.80771 | 4.42E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene78652 | 0.820777 | 5.73E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene78652 | 0.835992 | 1.21E-56 | -1.69E-46 |
| MS.gene057915 | MS.gene78652 | 0.827421 | 1.58E-54 | -1.69E-46 |
| MS.gene05847 | MS.gene78652 | 0.807447 | 5.03E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene78652 | 0.855463 | 6.20E-62 | -1.69E-46 |
| MS.gene058636 | MS.gene78652 | 0.809524 | 1.81E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene78652 | 0.811144 | 8.11E-51 | -1.69E-46 |
| MS.gene058829 | MS.gene78652 | 0.824301 | 8.69E-54 | -1.69E-46 |
| MS.gene059015 | MS.gene78652 | 0.817855 | 2.66E-52 | -1.69E-46 |
| MS.gene059439 | MS.gene78652 | 0.812209 | 4.76E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene78652 | 0.811138 | 8.13E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene78652 | 0.804864 | 1.76E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene78652 | 0.834257 | 3.33E-56 | -1.69E-46 |
| MS.gene060519 | MS.gene78652 | 0.838593 | 2.62E-57 | -1.69E-46 |
| MS.gene060587 | MS.gene78652 | 0.831703 | 1.44E-55 | -1.69E-46 |
| MS.gene060634 | MS.gene78652 | -0.800155 | 1.65E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78652.t1 | MTR_1g093095 | 74.419 | 172 | 41 | 1 | 79 | 247 | 99 | 270 | 1.71e-98 | 290 |
| MS.gene78652.t1 | MTR_1g016010 | 35.915 | 142 | 80 | 5 | 87 | 226 | 62 | 194 | 6.77e-20 | 88.6 |
| MS.gene78652.t1 | MTR_1g112270 | 34.932 | 146 | 85 | 5 | 82 | 226 | 60 | 196 | 1.47e-19 | 88.2 |
| MS.gene78652.t1 | MTR_1g112270 | 34.932 | 146 | 85 | 5 | 82 | 226 | 71 | 207 | 1.61e-19 | 87.8 |
| MS.gene78652.t1 | MTR_4g059870 | 35.971 | 139 | 80 | 4 | 89 | 226 | 61 | 191 | 1.70e-19 | 87.8 |
| MS.gene78652.t1 | MTR_1g094115 | 37.226 | 137 | 74 | 6 | 92 | 226 | 56 | 182 | 1.75e-19 | 87.8 |
| MS.gene78652.t1 | MTR_1g094115 | 35.374 | 147 | 83 | 6 | 82 | 226 | 63 | 199 | 2.34e-19 | 87.4 |
| MS.gene78652.t1 | MTR_2g093960 | 35.971 | 139 | 80 | 4 | 89 | 226 | 55 | 185 | 6.96e-19 | 85.5 |
| MS.gene78652.t1 | MTR_2g090745 | 33.742 | 163 | 97 | 6 | 65 | 226 | 7 | 159 | 7.70e-19 | 85.5 |
| MS.gene78652.t1 | MTR_8g017210 | 34.286 | 140 | 80 | 5 | 89 | 226 | 85 | 214 | 7.93e-19 | 85.9 |
| MS.gene78652.t1 | MTR_2g099990 | 33.333 | 147 | 86 | 5 | 82 | 226 | 62 | 198 | 1.51e-18 | 84.7 |
| MS.gene78652.t1 | MTR_2g099990 | 33.813 | 139 | 80 | 5 | 90 | 226 | 1 | 129 | 1.17e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78652.t1 | AT3G57670 | 76.718 | 262 | 39 | 4 | 19 | 258 | 122 | 383 | 5.98e-140 | 398 |
| MS.gene78652.t1 | AT1G51220 | 67.932 | 237 | 71 | 2 | 19 | 250 | 101 | 337 | 1.30e-117 | 340 |
| MS.gene78652.t1 | AT3G20880 | 68.201 | 239 | 65 | 6 | 19 | 250 | 176 | 410 | 8.97e-113 | 330 |
| MS.gene78652.t1 | AT1G13290 | 66.516 | 221 | 43 | 4 | 17 | 235 | 52 | 243 | 5.23e-103 | 301 |
| MS.gene78652.t1 | AT1G08290 | 56.175 | 251 | 100 | 4 | 3 | 243 | 82 | 332 | 9.08e-100 | 295 |
| MS.gene78652.t1 | AT1G34790 | 61.039 | 231 | 76 | 1 | 19 | 249 | 83 | 299 | 3.77e-98 | 289 |
| MS.gene78652.t1 | AT1G34370 | 35.028 | 177 | 100 | 5 | 89 | 256 | 28 | 198 | 4.73e-26 | 103 |
| MS.gene78652.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 89 | 231 | 238 | 386 | 9.99e-26 | 105 |
| MS.gene78652.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 89 | 231 | 238 | 386 | 9.99e-26 | 105 |
| MS.gene78652.t1 | AT5G22890 | 39.103 | 156 | 82 | 6 | 89 | 234 | 211 | 363 | 1.97e-23 | 97.8 |
| MS.gene78652.t1 | AT1G55110 | 36.620 | 142 | 79 | 5 | 87 | 226 | 84 | 216 | 3.22e-20 | 89.7 |
| MS.gene78652.t1 | AT1G55110 | 36.620 | 142 | 79 | 5 | 87 | 226 | 84 | 216 | 3.22e-20 | 89.7 |
| MS.gene78652.t1 | AT1G55110 | 36.620 | 142 | 79 | 5 | 87 | 226 | 84 | 216 | 3.22e-20 | 89.7 |
| MS.gene78652.t1 | AT2G02070 | 34.194 | 155 | 92 | 4 | 73 | 226 | 59 | 204 | 9.44e-20 | 88.6 |
| MS.gene78652.t1 | AT2G02070 | 34.194 | 155 | 92 | 4 | 73 | 226 | 59 | 204 | 9.44e-20 | 88.6 |
| MS.gene78652.t1 | AT5G03150 | 32.353 | 170 | 98 | 5 | 89 | 257 | 76 | 229 | 1.19e-19 | 88.2 |
| MS.gene78652.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.57e-19 | 87.8 |
| MS.gene78652.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.57e-19 | 87.8 |
| MS.gene78652.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.57e-19 | 87.8 |
| MS.gene78652.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.57e-19 | 87.8 |
| MS.gene78652.t1 | AT1G14580 | 35.616 | 146 | 84 | 4 | 82 | 226 | 69 | 205 | 5.68e-19 | 86.3 |
| MS.gene78652.t1 | AT1G14580 | 35.616 | 146 | 84 | 4 | 82 | 226 | 69 | 205 | 5.68e-19 | 86.3 |
| MS.gene78652.t1 | AT1G14580 | 35.616 | 146 | 84 | 4 | 82 | 226 | 83 | 219 | 6.19e-19 | 85.9 |
| MS.gene78652.t1 | AT2G02080 | 36.232 | 138 | 78 | 4 | 90 | 226 | 1 | 129 | 6.80e-19 | 85.9 |
| MS.gene78652.t1 | AT2G02080 | 36.232 | 138 | 78 | 4 | 90 | 226 | 1 | 129 | 6.80e-19 | 85.9 |
| MS.gene78652.t1 | AT5G66730 | 35.915 | 142 | 79 | 6 | 87 | 226 | 53 | 184 | 1.44e-18 | 85.1 |
| MS.gene78652.t1 | AT3G45260 | 35.971 | 139 | 80 | 4 | 89 | 226 | 62 | 192 | 1.04e-17 | 82.4 |
| MS.gene78652.t1 | AT3G45260 | 35.971 | 139 | 80 | 4 | 89 | 226 | 62 | 192 | 1.04e-17 | 82.4 |
| MS.gene78652.t1 | AT5G60470 | 33.813 | 139 | 83 | 4 | 89 | 226 | 58 | 188 | 1.41e-17 | 82.0 |
| MS.gene78652.t1 | AT1G03840 | 32.192 | 146 | 89 | 4 | 82 | 226 | 55 | 191 | 1.86e-17 | 81.6 |
| MS.gene78652.t1 | AT5G60470 | 33.813 | 139 | 83 | 4 | 89 | 226 | 67 | 197 | 1.92e-17 | 81.6 |
| MS.gene78652.t1 | AT1G03840 | 32.192 | 146 | 89 | 4 | 82 | 226 | 57 | 193 | 2.09e-17 | 81.6 |
| MS.gene78652.t1 | AT5G60470 | 33.813 | 139 | 83 | 4 | 89 | 226 | 63 | 193 | 2.13e-17 | 81.6 |
| MS.gene78652.t1 | AT5G44160 | 33.813 | 139 | 82 | 4 | 89 | 226 | 60 | 189 | 2.97e-17 | 81.3 |
| MS.gene78652.t1 | AT5G44160 | 33.813 | 139 | 82 | 4 | 89 | 226 | 21 | 150 | 3.08e-17 | 80.9 |
| MS.gene78652.t1 | AT3G50700 | 33.333 | 141 | 84 | 4 | 87 | 226 | 55 | 186 | 3.43e-17 | 80.9 |
| MS.gene78652.t1 | AT4G02670 | 32.192 | 146 | 90 | 3 | 82 | 226 | 71 | 208 | 8.00e-17 | 79.7 |
| MS.gene78652.t1 | AT4G02670 | 32.192 | 146 | 90 | 3 | 82 | 226 | 69 | 206 | 9.16e-17 | 79.3 |
| MS.gene78652.t1 | AT3G13810 | 32.877 | 146 | 89 | 4 | 82 | 226 | 87 | 224 | 1.02e-16 | 79.7 |
| MS.gene78652.t1 | AT3G13810 | 33.333 | 147 | 87 | 5 | 82 | 226 | 86 | 223 | 1.12e-16 | 79.7 |
| MS.gene78652.t1 | AT3G13810 | 33.333 | 147 | 87 | 5 | 82 | 226 | 86 | 223 | 1.12e-16 | 79.7 |
| MS.gene78652.t1 | AT3G13810 | 33.333 | 147 | 87 | 5 | 82 | 226 | 81 | 218 | 1.30e-16 | 79.3 |
| MS.gene78652.t1 | AT3G13810 | 32.877 | 146 | 89 | 4 | 82 | 226 | 73 | 210 | 1.35e-16 | 79.3 |
| MS.gene78652.t1 | AT3G13810 | 32.877 | 146 | 89 | 4 | 82 | 226 | 67 | 204 | 1.58e-16 | 79.0 |
| MS.gene78652.t1 | AT1G68130 | 30.216 | 139 | 86 | 5 | 87 | 222 | 62 | 192 | 2.66e-12 | 66.6 |
Find 49 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCCTTCTCAGATTCTTAT+TGG | 0.201568 | 1.4:-42665499 | MS.gene78652:CDS |
| TGTGTACCTCTTAGAGATTC+TGG | 0.222352 | 1.4:+42663200 | None:intergenic |
| AAAGATCATATAAGAGCTTT+TGG | 0.231134 | 1.4:-42662915 | MS.gene78652:CDS |
| GGGAGTGGTCATGCTGCTTA+TGG | 0.311784 | 1.4:-42662894 | MS.gene78652:CDS |
| CACTTCAAACACATTATAAA+AGG | 0.323447 | 1.4:-42663079 | MS.gene78652:CDS |
| CATGTTGTTGTATCTGTTGA+AGG | 0.332315 | 1.4:+42665441 | None:intergenic |
| GTGACTGTTGCACTTCATAT+AGG | 0.339638 | 1.4:-42665694 | MS.gene78652:CDS |
| TGACTGTTGCACTTCATATA+GGG | 0.360463 | 1.4:-42665693 | MS.gene78652:CDS |
| TCTTTCAATGGCTTTGCTCT+TGG | 0.361148 | 1.4:+42663110 | None:intergenic |
| ACCCTTGTTAAGTGATCTAT+TGG | 0.367615 | 1.4:+42665537 | None:intergenic |
| ATTGTTGTTCACCAGGTTGC+AGG | 0.377391 | 1.4:-42663148 | MS.gene78652:CDS |
| CCTTGCTATTGTTGTTCACC+AGG | 0.381067 | 1.4:-42663155 | MS.gene78652:CDS |
| CATGCTGCTTATGGAATTGA+TGG | 0.388035 | 1.4:-42662885 | MS.gene78652:CDS |
| TAGTCATAAAGTAGAAGAAA+AGG | 0.405108 | 1.4:-42665731 | MS.gene78652:CDS |
| AAGCTTTGGTATTGTCTTTG+TGG | 0.415419 | 1.4:-42662966 | MS.gene78652:CDS |
| CTTATCCTCAGATGCATATG+TGG | 0.432175 | 1.4:-42663250 | MS.gene78652:intron |
| AGAAGAACTGTGGAAAGCTT+TGG | 0.443136 | 1.4:-42662980 | MS.gene78652:CDS |
| AGTGTTCTGAAATCTTTCAA+TGG | 0.447098 | 1.4:+42663098 | None:intergenic |
| ATCTTGCACTTTAATGGATG+TGG | 0.454122 | 1.4:-42665761 | None:intergenic |
| TCTTGTTCAACTTCAGAAGC+AGG | 0.458660 | 1.4:+42662843 | None:intergenic |
| CGACCGCTTATGCTTAAAAT+CGG | 0.461660 | 1.4:+42662941 | None:intergenic |
| CACTTAACAAGGGTCAGTAT+TGG | 0.467580 | 1.4:-42665528 | MS.gene78652:CDS |
| TATTAGCGACGATTCCTCTT+CGG | 0.484816 | 1.4:-42665575 | MS.gene78652:CDS |
| CTAAGAGGTACACAACCAAC+AGG | 0.500045 | 1.4:-42663191 | MS.gene78652:CDS |
| ATCTCAGAAGAACTAGGGCT+TGG | 0.503709 | 1.4:+42665667 | None:intergenic |
| AGCGACGATTCCTCTTCGGC+TGG | 0.529279 | 1.4:-42665571 | MS.gene78652:CDS |
| CAGATGCATATGTGGGGACA+TGG | 0.531260 | 1.4:-42663242 | MS.gene78652:CDS |
| CATGGATCACAATACAGAAA+AGG | 0.532079 | 1.4:-42663224 | MS.gene78652:CDS |
| TATGTGTAGAAAATGTGGTA+AGG | 0.535524 | 1.4:-42663036 | MS.gene78652:CDS |
| TTATCCTCAGATGCATATGT+GGG | 0.539918 | 1.4:-42663249 | MS.gene78652:intron |
| GTTGCAATCTCAGAAGAACT+AGG | 0.540111 | 1.4:+42665661 | None:intergenic |
| ATAAGAATCTGAGAAGGAGT+AGG | 0.541391 | 1.4:+42665502 | None:intergenic |
| GAAGAAAAGGAAGATCATGA+AGG | 0.566975 | 1.4:-42665718 | MS.gene78652:CDS |
| TAAGAATCTGAGAAGGAGTA+GGG | 0.573637 | 1.4:+42665503 | None:intergenic |
| AAAGGACCAGAATCTCTAAG+AGG | 0.574044 | 1.4:-42663206 | MS.gene78652:CDS |
| CACATTATAAAAGGAAACAT+GGG | 0.574183 | 1.4:-42663070 | MS.gene78652:CDS |
| ACACATTATAAAAGGAAACA+TGG | 0.579095 | 1.4:-42663071 | MS.gene78652:CDS |
| CACAACCAACAGGTATGCTA+AGG | 0.584031 | 1.4:-42663181 | MS.gene78652:CDS |
| TTGCAATCTCAGAAGAACTA+GGG | 0.593596 | 1.4:+42665662 | None:intergenic |
| TCAATGTTGTTCCTGCAACC+TGG | 0.607275 | 1.4:+42663137 | None:intergenic |
| GGAAGCCTTAGCATACCTGT+TGG | 0.618027 | 1.4:+42663176 | None:intergenic |
| TACCAATAGATCACTTAACA+AGG | 0.618619 | 1.4:-42665539 | MS.gene78652:CDS |
| CAACAGATACAACAACATGC+AGG | 0.634469 | 1.4:-42665437 | MS.gene78652:intron |
| GGACCAATAAGAATCTGAGA+AGG | 0.643048 | 1.4:+42665496 | None:intergenic |
| ACAGGACAAGAGAACTGTGT+AGG | 0.644430 | 1.4:+42665475 | None:intergenic |
| AGAACTCATGAGAAGAACTG+TGG | 0.653790 | 1.4:-42662990 | MS.gene78652:CDS |
| CCTGGTGAACAACAATAGCA+AGG | 0.660333 | 1.4:+42663155 | None:intergenic |
| ACCAATAGATCACTTAACAA+GGG | 0.699637 | 1.4:-42665538 | MS.gene78652:CDS |
| TATCCTCAGATGCATATGTG+GGG | 0.710095 | 1.4:-42663248 | MS.gene78652:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTACAATTAAATAGA+AGG | + | chr1.4:42664885-42664904 | None:intergenic | 10.0% |
| !! | TATAAATTACATTAAATTTG+AGG | - | chr1.4:42664152-42664171 | MS.gene78652:intron | 10.0% |
| !! | TTAATATATTATCATTTACT+TGG | + | chr1.4:42663915-42663934 | None:intergenic | 10.0% |
| !! | TTCTATTTAATTGTAAATAA+TGG | - | chr1.4:42664884-42664903 | MS.gene78652:intron | 10.0% |
| !!! | AAATAATGGTTTATATATTT+TGG | - | chr1.4:42664898-42664917 | MS.gene78652:intron | 10.0% |
| !!! | ATAAGAAAAAATTATCTTTT+TGG | - | chr1.4:42663716-42663735 | MS.gene78652:intron | 10.0% |
| !!! | ATTTTAAATTAATTTGAGAA+AGG | - | chr1.4:42664602-42664621 | MS.gene78652:intron | 10.0% |
| !!! | TTATAAATTTCATTAATTTG+AGG | - | chr1.4:42664205-42664224 | MS.gene78652:intron | 10.0% |
| !!! | TTTTAAATTAATTTGAGAAA+GGG | - | chr1.4:42664603-42664622 | MS.gene78652:intron | 10.0% |
| !! | AAACAAAAACTATTAATTGT+TGG | + | chr1.4:42663941-42663960 | None:intergenic | 15.0% |
| !! | TATATAATGATACAATTAGA+AGG | + | chr1.4:42664074-42664093 | None:intergenic | 15.0% |
| !! | TGTAATAATTATTTAACTCA+AGG | + | chr1.4:42664267-42664286 | None:intergenic | 15.0% |
| !! | TTAACAAAAAAAATAGTGAA+GGG | - | chr1.4:42664572-42664591 | MS.gene78652:intron | 15.0% |
| !! | TTTAACAAAAAAAATAGTGA+AGG | - | chr1.4:42664571-42664590 | MS.gene78652:intron | 15.0% |
| !! | TTTAATTAATTACACCAATA+TGG | + | chr1.4:42663654-42663673 | None:intergenic | 15.0% |
| !!! | ATAATAACTTCTTCTTTTTA+AGG | - | chr1.4:42665264-42665283 | MS.gene78652:intron | 15.0% |
| !!! | GAAAACAAATTTAATTTCTT+GGG | - | chr1.4:42663482-42663501 | MS.gene78652:intron | 15.0% |
| !!! | TGAAAACAAATTTAATTTCT+TGG | - | chr1.4:42663481-42663500 | MS.gene78652:intron | 15.0% |
| !!! | TTTTATGTGGATTAATAATT+AGG | + | chr1.4:42665050-42665069 | None:intergenic | 15.0% |
| !! | AAGAAAAATTTCAAAAGAAG+AGG | + | chr1.4:42663572-42663591 | None:intergenic | 20.0% |
| !! | ATATGAATTCAGTCTAAAAA+GGG | + | chr1.4:42663974-42663993 | None:intergenic | 20.0% |
| !! | TATATGAATTCAGTCTAAAA+AGG | + | chr1.4:42663975-42663994 | None:intergenic | 20.0% |
| !! | TGAAAAAACTCAAAAAATGT+TGG | + | chr1.4:42665173-42665192 | None:intergenic | 20.0% |
| !! | TGGACACTAAATTAATATTA+AGG | + | chr1.4:42663236-42663255 | None:intergenic | 20.0% |
| !!! | CATATCATTTTTGTTTTATG+TGG | + | chr1.4:42665063-42665082 | None:intergenic | 20.0% |
| !!! | GTATTTTTTGCATGATAAAA+TGG | - | chr1.4:42663683-42663702 | MS.gene78652:intron | 20.0% |
| !!! | TGATTTTCTTAAATTATCAG+CGG | - | chr1.4:42663371-42663390 | MS.gene78652:intron | 20.0% |
| ! | AAGTTCCACATATACATTAA+TGG | - | chr1.4:42664009-42664028 | MS.gene78652:intron | 25.0% |
| ! | ACACATTATAAAAGGAAACA+TGG | - | chr1.4:42665495-42665514 | MS.gene78652:CDS | 25.0% |
| ! | ATTCCTAATTAAAATCTTGG+CGG | - | chr1.4:42665084-42665103 | MS.gene78652:intron | 25.0% |
| ! | CACATTATAAAAGGAAACAT+GGG | - | chr1.4:42665496-42665515 | MS.gene78652:CDS | 25.0% |
| ! | CACTTCAAACACATTATAAA+AGG | - | chr1.4:42665487-42665506 | MS.gene78652:CDS | 25.0% |
| ! | CATATAAATGTCATGTCAAA+AGG | - | chr1.4:42664755-42664774 | MS.gene78652:intron | 25.0% |
| ! | GAAGAAAAATAGAAAGTGAA+CGG | + | chr1.4:42663595-42663614 | None:intergenic | 25.0% |
| ! | GATGTTTGACTAATTGTAAT+AGG | - | chr1.4:42663534-42663553 | MS.gene78652:intron | 25.0% |
| ! | GTAATAATCATCATTGATGA+AGG | + | chr1.4:42665111-42665130 | None:intergenic | 25.0% |
| ! | TAGTCATAAAGTAGAAGAAA+AGG | - | chr1.4:42662835-42662854 | MS.gene78652:CDS | 25.0% |
| ! | TATGTCCATTAATGTATATG+TGG | + | chr1.4:42664017-42664036 | None:intergenic | 25.0% |
| ! | TCTTTGTTCTTTAACCATAT+TGG | - | chr1.4:42663637-42663656 | MS.gene78652:intron | 25.0% |
| ! | TGCATTCCTAATTAAAATCT+TGG | - | chr1.4:42665081-42665100 | MS.gene78652:intron | 25.0% |
| !! | AAAGATCATATAAGAGCTTT+TGG | - | chr1.4:42665651-42665670 | MS.gene78652:CDS | 25.0% |
| !! | AAGATCATATAAGAGCTTTT+GGG | - | chr1.4:42665652-42665671 | MS.gene78652:CDS | 25.0% |
| !! | TAATAGAACTGAATTTTGCA+GGG | - | chr1.4:42663874-42663893 | MS.gene78652:intron | 25.0% |
| !! | TCAGATTCTATATATCCTTT+TGG | - | chr1.4:42663761-42663780 | MS.gene78652:intron | 25.0% |
| !! | TTAATAGAACTGAATTTTGC+AGG | - | chr1.4:42663873-42663892 | MS.gene78652:intron | 25.0% |
| !!! | TGTTTTCAGAAGTATGAATT+TGG | + | chr1.4:42663469-42663488 | None:intergenic | 25.0% |
| AAAACTCAAAAAATGTTGGC+TGG | + | chr1.4:42665169-42665188 | None:intergenic | 30.0% | |
| AATGTATATGTGGAACTTTC+AGG | + | chr1.4:42664007-42664026 | None:intergenic | 30.0% | |
| ACAATTAAATAGAAGGCAAG+CGG | + | chr1.4:42664878-42664897 | None:intergenic | 30.0% | |
| ACCAATAGATCACTTAACAA+GGG | - | chr1.4:42663028-42663047 | MS.gene78652:CDS | 30.0% | |
| AGAACAAAGAAAAATGACCT+TGG | + | chr1.4:42663627-42663646 | None:intergenic | 30.0% | |
| AGACTTCAATGTTGTACTAA+AGG | + | chr1.4:42663819-42663838 | None:intergenic | 30.0% | |
| AGGGAAATCATTATTAACAG+CGG | - | chr1.4:42664622-42664641 | MS.gene78652:intron | 30.0% | |
| ATAACAATGTCATGTCTTCT+AGG | - | chr1.4:42664784-42664803 | MS.gene78652:intron | 30.0% | |
| GAACAAAGAAAAATGACCTT+GGG | + | chr1.4:42663626-42663645 | None:intergenic | 30.0% | |
| GAGTTGTTTAATCAACCAAA+AGG | + | chr1.4:42663779-42663798 | None:intergenic | 30.0% | |
| GTATGAATTTGGAAGAAAAG+TGG | + | chr1.4:42663458-42663477 | None:intergenic | 30.0% | |
| TACCAATAGATCACTTAACA+AGG | - | chr1.4:42663027-42663046 | MS.gene78652:CDS | 30.0% | |
| TATGTGTAGAAAATGTGGTA+AGG | - | chr1.4:42665530-42665549 | MS.gene78652:CDS | 30.0% | |
| TCTTAAATTATCAGCGGTAT+CGG | - | chr1.4:42663377-42663396 | MS.gene78652:intron | 30.0% | |
| TTAAGGAGAAGAAGATCTAT+AGG | + | chr1.4:42663219-42663238 | None:intergenic | 30.0% | |
| TTCCTAATTAAAATCTTGGC+GGG | - | chr1.4:42665085-42665104 | MS.gene78652:intron | 30.0% | |
| TTTAGTGTATTCATATGCGT+CGG | + | chr1.4:42663346-42663365 | None:intergenic | 30.0% | |
| TTTGGTTGATTAAACAACTC+AGG | - | chr1.4:42663779-42663798 | MS.gene78652:intron | 30.0% | |
| ! | AGTTGCAAAATCAAGTTGTT+AGG | - | chr1.4:42664989-42665008 | MS.gene78652:intron | 30.0% |
| ! | CCACATTTTCTACACATAAA+AGG | + | chr1.4:42665528-42665547 | None:intergenic | 30.0% |
| ! | CCTTTTATGTGTAGAAAATG+TGG | - | chr1.4:42665525-42665544 | MS.gene78652:CDS | 30.0% |
| ! | GTTGCAAAATCAAGTTGTTA+GGG | - | chr1.4:42664990-42665009 | MS.gene78652:intron | 30.0% |
| ! | TCATTAATTTGAGGTGCAAA+AGG | - | chr1.4:42664214-42664233 | MS.gene78652:intron | 30.0% |
| !! | AGTGTTCTGAAATCTTTCAA+TGG | + | chr1.4:42665471-42665490 | None:intergenic | 30.0% |
| !!! | AATTGATGGTTTTGAAGAAG+AGG | - | chr1.4:42665695-42665714 | MS.gene78652:CDS | 30.0% |
| !!! | GTGCTAAGGTTTTGAAAAAA+AGG | + | chr1.4:42663193-42663212 | None:intergenic | 30.0% |
| AAAAATGACCTTGGGAAAAG+GGG | + | chr1.4:42663618-42663637 | None:intergenic | 35.0% | |
| ACCCTTGTTAAGTGATCTAT+TGG | + | chr1.4:42663032-42663051 | None:intergenic | 35.0% | |
| ACTCATCAACCTAATGATAG+TGG | + | chr1.4:42664395-42664414 | None:intergenic | 35.0% | |
| ACTCCTTCTCAGATTCTTAT+TGG | - | chr1.4:42663067-42663086 | MS.gene78652:CDS | 35.0% | |
| AGAAAAATGACCTTGGGAAA+AGG | + | chr1.4:42663620-42663639 | None:intergenic | 35.0% | |
| AGTTCTATTAAGCAGTTGCA+TGG | + | chr1.4:42663864-42663883 | None:intergenic | 35.0% | |
| AGTTGAATGAACCACAAACA+CGG | + | chr1.4:42663425-42663444 | None:intergenic | 35.0% | |
| AGTTGCATGGCAAAATACAT+AGG | + | chr1.4:42663851-42663870 | None:intergenic | 35.0% | |
| ATAAGAATCTGAGAAGGAGT+AGG | + | chr1.4:42663067-42663086 | None:intergenic | 35.0% | |
| ATGTTTCCATAGAGATCACT+TGG | + | chr1.4:42664428-42664447 | None:intergenic | 35.0% | |
| CAATTAAATAGAAGGCAAGC+GGG | + | chr1.4:42664877-42664896 | None:intergenic | 35.0% | |
| CATGGATCACAATACAGAAA+AGG | - | chr1.4:42665342-42665361 | MS.gene78652:intron | 35.0% | |
| CATGTTGTTGTATCTGTTGA+AGG | + | chr1.4:42663128-42663147 | None:intergenic | 35.0% | |
| CATTTCACAATCAACGCAAT+GGG | + | chr1.4:42664538-42664557 | None:intergenic | 35.0% | |
| CTCATCAACCTAATGATAGT+GGG | + | chr1.4:42664394-42664413 | None:intergenic | 35.0% | |
| CTCTATGGAAACATACAAGA+GGG | - | chr1.4:42664434-42664453 | MS.gene78652:intron | 35.0% | |
| GAAAAATGACCTTGGGAAAA+GGG | + | chr1.4:42663619-42663638 | None:intergenic | 35.0% | |
| GAAGAAAAGGAAGATCATGA+AGG | - | chr1.4:42662848-42662867 | MS.gene78652:CDS | 35.0% | |
| GTAGCTCAATGGTATGAATT+TGG | + | chr1.4:42663256-42663275 | None:intergenic | 35.0% | |
| TAAGAATCTGAGAAGGAGTA+GGG | + | chr1.4:42663066-42663085 | None:intergenic | 35.0% | |
| TCAAGAGGGTTCAATATCTT+TGG | - | chr1.4:42664354-42664373 | MS.gene78652:intron | 35.0% | |
| TCATTTCACAATCAACGCAA+TGG | + | chr1.4:42664539-42664558 | None:intergenic | 35.0% | |
| TCTCTATGGAAACATACAAG+AGG | - | chr1.4:42664433-42664452 | MS.gene78652:intron | 35.0% | |
| TGACTGTTGCACTTCATATA+GGG | - | chr1.4:42662873-42662892 | MS.gene78652:CDS | 35.0% | |
| TTACAACCAAGTGATCTCTA+TGG | - | chr1.4:42664419-42664438 | MS.gene78652:intron | 35.0% | |
| TTATCCTCAGATGCATATGT+GGG | - | chr1.4:42665317-42665336 | MS.gene78652:intron | 35.0% | |
| TTGCAATCTCAGAAGAACTA+GGG | + | chr1.4:42662907-42662926 | None:intergenic | 35.0% | |
| ! | AAGCTTTGGTATTGTCTTTG+TGG | - | chr1.4:42665600-42665619 | MS.gene78652:CDS | 35.0% |
| ! | ATATGTGGAACTTTCAGGTA+TGG | + | chr1.4:42664002-42664021 | None:intergenic | 35.0% |
| ! | ATTTTGCAACTTCAAGTGAG+GGG | + | chr1.4:42664980-42664999 | None:intergenic | 35.0% |
| ! | GATTTTGCAACTTCAAGTGA+GGG | + | chr1.4:42664981-42665000 | None:intergenic | 35.0% |
| ! | GTTCCGATTTTAAGCATAAG+CGG | - | chr1.4:42665622-42665641 | MS.gene78652:CDS | 35.0% |
| ! | TGATTTTGCAACTTCAAGTG+AGG | + | chr1.4:42664982-42665001 | None:intergenic | 35.0% |
| ! | TTGAAGGTTTTACAGCAAAC+AGG | + | chr1.4:42663112-42663131 | None:intergenic | 35.0% |
| !! | TTGTAAGAGTTTTGTCCATG+AGG | + | chr1.4:42665027-42665046 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTGTCATCCGAAA+AGG | - | chr1.4:42664831-42664850 | MS.gene78652:intron | 35.0% |
| AAAATGACCTTGGGAAAAGG+GGG | + | chr1.4:42663617-42663636 | None:intergenic | 40.0% | |
| AAAGGACCAGAATCTCTAAG+AGG | - | chr1.4:42665360-42665379 | MS.gene78652:intron | 40.0% | |
| AATGTTGTGTTCACGAGGAT+TGG | - | chr1.4:42664813-42664832 | MS.gene78652:intron | 40.0% | |
| AGAACTCATGAGAAGAACTG+TGG | - | chr1.4:42665576-42665595 | MS.gene78652:CDS | 40.0% | |
| AGAAGAACTGTGGAAAGCTT+TGG | - | chr1.4:42665586-42665605 | MS.gene78652:CDS | 40.0% | |
| CAACAGATACAACAACATGC+AGG | - | chr1.4:42663129-42663148 | MS.gene78652:CDS | 40.0% | |
| CACTTAACAAGGGTCAGTAT+TGG | - | chr1.4:42663038-42663057 | MS.gene78652:CDS | 40.0% | |
| CGACCGCTTATGCTTAAAAT+CGG | + | chr1.4:42665628-42665647 | None:intergenic | 40.0% | |
| CTTATCCTCAGATGCATATG+TGG | - | chr1.4:42665316-42665335 | MS.gene78652:intron | 40.0% | |
| GACAATGAGACACTTCAAGA+GGG | - | chr1.4:42664340-42664359 | MS.gene78652:intron | 40.0% | |
| GAGGGGTTCAAATTTCATGT+AGG | + | chr1.4:42664963-42664982 | None:intergenic | 40.0% | |
| GGACCAATAAGAATCTGAGA+AGG | + | chr1.4:42663073-42663092 | None:intergenic | 40.0% | |
| GGAGAAGAAGATCTATAGGT+TGG | + | chr1.4:42663215-42663234 | None:intergenic | 40.0% | |
| GTCTCAAACCCACTATCATT+AGG | - | chr1.4:42664383-42664402 | MS.gene78652:intron | 40.0% | |
| GTGACTGTTGCACTTCATAT+AGG | - | chr1.4:42662872-42662891 | MS.gene78652:CDS | 40.0% | |
| GTTGCAATCTCAGAAGAACT+AGG | + | chr1.4:42662908-42662927 | None:intergenic | 40.0% | |
| TATCCTCAGATGCATATGTG+GGG | - | chr1.4:42665318-42665337 | MS.gene78652:intron | 40.0% | |
| TATTAGCGACGATTCCTCTT+CGG | - | chr1.4:42662991-42663010 | MS.gene78652:CDS | 40.0% | |
| TCTACGCAGCAATTCTTCTT+TGG | + | chr1.4:42664317-42664336 | None:intergenic | 40.0% | |
| TCTTGTTCAACTTCAGAAGC+AGG | + | chr1.4:42665726-42665745 | None:intergenic | 40.0% | |
| TGACAATGAGACACTTCAAG+AGG | - | chr1.4:42664339-42664358 | MS.gene78652:intron | 40.0% | |
| TGTGTACCTCTTAGAGATTC+TGG | + | chr1.4:42665369-42665388 | None:intergenic | 40.0% | |
| ! | CATGCTGCTTATGGAATTGA+TGG | - | chr1.4:42665681-42665700 | MS.gene78652:CDS | 40.0% |
| ! | TCTTTCAATGGCTTTGCTCT+TGG | + | chr1.4:42665459-42665478 | None:intergenic | 40.0% |
| ! | TTTGCAAAGGTGTAGCTCAA+TGG | + | chr1.4:42663267-42663286 | None:intergenic | 40.0% |
| !! | AGATCTATAGGTTGGTGCTA+AGG | + | chr1.4:42663207-42663226 | None:intergenic | 40.0% |
| !! | ATGATAGTGGGTTTGAGACT+TGG | + | chr1.4:42664382-42664401 | None:intergenic | 40.0% |
| !! | CATATAAGAGCTTTTGGGAG+TGG | - | chr1.4:42665657-42665676 | MS.gene78652:CDS | 40.0% |
| !! | CTTTTGCTGTAAGAGGAGAT+TGG | - | chr1.4:42665553-42665572 | MS.gene78652:CDS | 40.0% |
| ACAGGACAAGAGAACTGTGT+AGG | + | chr1.4:42663094-42663113 | None:intergenic | 45.0% | |
| ACTCAAAAATCCAGCCGAAG+AGG | + | chr1.4:42663008-42663027 | None:intergenic | 45.0% | |
| AGGGATGAATTGACACCTCA+TGG | - | chr1.4:42665009-42665028 | MS.gene78652:intron | 45.0% | |
| ATCTCAGAAGAACTAGGGCT+TGG | + | chr1.4:42662902-42662921 | None:intergenic | 45.0% | |
| CACAACCAACAGGTATGCTA+AGG | - | chr1.4:42665385-42665404 | MS.gene78652:intron | 45.0% | |
| CCACAAACACGGACATAACA+TGG | + | chr1.4:42663414-42663433 | None:intergenic | 45.0% | |
| CCATGAATGTTGTGTTCACG+AGG | - | chr1.4:42664808-42664827 | MS.gene78652:intron | 45.0% | |
| CCATGTTATGTCCGTGTTTG+TGG | - | chr1.4:42663411-42663430 | MS.gene78652:intron | 45.0% | |
| CCTCGTGAACACAACATTCA+TGG | + | chr1.4:42664811-42664830 | None:intergenic | 45.0% | |
| CCTGGTGAACAACAATAGCA+AGG | + | chr1.4:42665414-42665433 | None:intergenic | 45.0% | |
| TCAATGTTGTTCCTGCAACC+TGG | + | chr1.4:42665432-42665451 | None:intergenic | 45.0% | |
| ! | ATTGTTGTTCACCAGGTTGC+AGG | - | chr1.4:42665418-42665437 | MS.gene78652:intron | 45.0% |
| ! | CATAGGAGGAGGTTTTGCAA+AGG | + | chr1.4:42663280-42663299 | None:intergenic | 45.0% |
| ! | CTAAGAGGTACACAACCAAC+AGG | - | chr1.4:42665375-42665394 | MS.gene78652:intron | 45.0% |
| ! | GTGGAACTTTCAGGTATGGA+AGG | + | chr1.4:42663998-42664017 | None:intergenic | 45.0% |
| ! | TTTTCTTCCCCCTTTTCCCA+AGG | - | chr1.4:42663607-42663626 | MS.gene78652:intron | 45.0% |
| !! | CCTTGCTATTGTTGTTCACC+AGG | - | chr1.4:42665411-42665430 | MS.gene78652:intron | 45.0% |
| !! | GGTAAGGCTTTTGCTGTAAG+AGG | - | chr1.4:42665546-42665565 | MS.gene78652:CDS | 45.0% |
| !!! | GGCCCGCCAAGATTTTAATT+AGG | + | chr1.4:42665090-42665109 | None:intergenic | 45.0% |
| !!! | TAATAATGTAATTTTTAAAA+GGG | - | chr1.4:42664651-42664670 | MS.gene78652:intron | 5.0% |
| !!! | TTAATAATGTAATTTTTAAA+AGG | - | chr1.4:42664650-42664669 | MS.gene78652:intron | 5.0% |
| AAACCTCCTCCTATGAAGCG+CGG | - | chr1.4:42663285-42663304 | MS.gene78652:intron | 50.0% | |
| CAGATGCATATGTGGGGACA+TGG | - | chr1.4:42665324-42665343 | MS.gene78652:intron | 50.0% | |
| GGAAGCCTTAGCATACCTGT+TGG | + | chr1.4:42665393-42665412 | None:intergenic | 50.0% | |
| TATGAAGCGCGGACACTCAT+CGG | - | chr1.4:42663296-42663315 | MS.gene78652:intron | 50.0% | |
| TGTCCCCACATATGCATCTG+AGG | + | chr1.4:42665324-42665343 | None:intergenic | 50.0% | |
| ! | GCTGCGTCGTTAGACCTTTT+CGG | + | chr1.4:42664848-42664867 | None:intergenic | 50.0% |
| GATGAGTGTCCGCGCTTCAT+AGG | + | chr1.4:42663297-42663316 | None:intergenic | 55.0% | |
| ! | GGGAGTGGTCATGCTGCTTA+TGG | - | chr1.4:42665672-42665691 | MS.gene78652:CDS | 55.0% |
| AGCGACGATTCCTCTTCGGC+TGG | - | chr1.4:42662995-42663014 | MS.gene78652:CDS | 60.0% | |
| GAGTGTCCGCGCTTCATAGG+AGG | + | chr1.4:42663294-42663313 | None:intergenic | 60.0% | |
| TGTCCGCGCTTCATAGGAGG+AGG | + | chr1.4:42663291-42663310 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 42662818 | 42665770 | 42662818 | ID=MS.gene78652 |
| chr1.4 | mRNA | 42662818 | 42665770 | 42662818 | ID=MS.gene78652.t1;Parent=MS.gene78652 |
| chr1.4 | exon | 42665438 | 42665770 | 42665438 | ID=MS.gene78652.t1.exon1;Parent=MS.gene78652.t1 |
| chr1.4 | CDS | 42665438 | 42665770 | 42665438 | ID=cds.MS.gene78652.t1;Parent=MS.gene78652.t1 |
| chr1.4 | exon | 42662818 | 42663261 | 42662818 | ID=MS.gene78652.t1.exon2;Parent=MS.gene78652.t1 |
| chr1.4 | CDS | 42662818 | 42663261 | 42662818 | ID=cds.MS.gene78652.t1;Parent=MS.gene78652.t1 |
| Gene Sequence |
| Protein sequence |
