AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87639

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87639.t1 MTR_4g047610 94.186 344 19 1 1 344 1 343 0.0 663
MS.gene87639.t1 MTR_5g022560 87.500 344 43 0 1 344 1 344 0.0 646
MS.gene87639.t1 MTR_4g079770 86.705 346 43 3 1 344 1 345 0.0 626
MS.gene87639.t1 MTR_4g107930 84.348 345 53 1 1 344 1 345 0.0 617
MS.gene87639.t1 MTR_4g079470 87.692 325 38 2 21 344 22 345 0.0 598
MS.gene87639.t1 MTR_4g079800 84.308 325 49 2 21 344 22 345 0.0 580
MS.gene87639.t1 MTR_2g075830 73.547 344 88 2 1 344 1 341 0.0 521
MS.gene87639.t1 MTR_4g080700 63.889 324 105 6 25 344 25 340 4.42e-152 431
MS.gene87639.t1 MTR_4g080730 61.494 348 122 6 1 344 1 340 8.52e-152 430
MS.gene87639.t1 MTR_4g080360 52.023 346 160 5 1 344 1 342 7.63e-131 377
MS.gene87639.t1 MTR_2g083930 52.663 338 145 5 12 342 13 342 3.00e-129 373
MS.gene87639.t1 MTR_4g104370 55.588 340 138 9 10 342 9 342 4.15e-128 371
MS.gene87639.t1 MTR_3g075390 52.924 342 145 7 14 343 7 344 7.65e-127 368
MS.gene87639.t1 MTR_4g079440 54.839 310 134 3 33 342 40 343 1.32e-120 351
MS.gene87639.t1 MTR_7g078600 56.774 310 123 6 34 342 37 336 7.85e-120 349
MS.gene87639.t1 MTR_3g116080 54.603 315 131 6 33 343 41 347 1.74e-117 343
MS.gene87639.t1 MTR_7g079230 51.170 342 159 5 1 342 1 334 3.71e-117 342
MS.gene87639.t1 MTR_2g090890 52.104 309 141 4 35 343 35 336 2.09e-115 338
MS.gene87639.t1 MTR_1g107550 52.681 317 139 6 32 342 43 354 1.04e-114 341
MS.gene87639.t1 MTR_4g094918 45.882 340 174 5 10 343 6 341 1.56e-111 329
MS.gene87639.t1 MTR_3g102220 49.541 327 147 7 27 342 41 360 2.76e-109 327
MS.gene87639.t1 MTR_1g018840 48.711 349 154 8 11 342 20 360 6.16e-109 326
MS.gene87639.t1 MTR_1g018840 48.711 349 154 8 11 342 20 360 6.76e-109 325
MS.gene87639.t1 MTR_3g112430 50.161 311 142 5 40 343 37 341 3.57e-102 308
MS.gene87639.t1 MTR_2g015850 52.414 290 131 5 55 342 78 362 2.26e-95 288
MS.gene87639.t1 MTR_2g016180 43.931 346 173 10 11 343 18 355 1.52e-88 274
MS.gene87639.t1 MTR_2g016270 44.023 343 162 10 11 343 18 340 2.58e-86 268
MS.gene87639.t1 MTR_2g067900 46.057 317 150 12 38 341 15 323 3.10e-77 240
MS.gene87639.t1 MTR_2g067560 43.925 321 149 13 38 338 15 324 6.61e-72 240
MS.gene87639.t1 MTR_2g064475 40.286 350 152 16 38 343 15 351 9.10e-72 227
MS.gene87639.t1 MTR_7g078630 47.735 287 108 7 28 303 695 950 4.37e-71 238
MS.gene87639.t1 MTR_2g015920 40.566 318 176 10 33 343 47 358 7.06e-71 225
MS.gene87639.t1 MTR_4g125300 41.558 308 163 9 41 343 53 348 1.25e-70 224
MS.gene87639.t1 MTR_4g065077 35.655 359 197 10 8 343 9 356 9.53e-70 222
MS.gene87639.t1 MTR_2g066980 36.236 356 166 13 9 343 3 318 1.90e-68 218
MS.gene87639.t1 MTR_2g015930 36.538 364 202 12 1 343 3 358 1.54e-66 214
MS.gene87639.t1 MTR_4g071060 38.585 311 165 9 45 340 54 353 1.19e-64 209
MS.gene87639.t1 MTR_8g086470 34.174 357 189 10 8 343 25 356 5.31e-63 204
MS.gene87639.t1 MTR_1g023210 36.686 338 171 12 23 335 33 352 2.33e-62 203
MS.gene87639.t1 MTR_1g023810 45.022 231 116 7 116 341 37 261 6.29e-59 191
MS.gene87639.t1 MTR_1g094135 34.897 341 187 10 23 340 35 363 1.83e-56 188
MS.gene87639.t1 MTR_4g073660 33.663 303 157 9 41 335 49 315 4.29e-44 154
MS.gene87639.t1 MTR_4g072790 33.113 302 162 9 39 335 46 312 4.93e-44 154
MS.gene87639.t1 MTR_4g072340 33.663 303 157 9 41 335 50 316 5.96e-44 154
MS.gene87639.t1 MTR_2g015840 48.052 154 76 3 10 161 5 156 3.42e-40 142
MS.gene87639.t1 MTR_2g015840 54.464 112 50 1 232 343 161 271 4.14e-35 129
MS.gene87639.t1 MTR_7g078580 62.245 98 36 1 245 342 4 100 5.40e-40 137
MS.gene87639.t1 MTR_7g079130 67.778 90 29 0 253 342 7 96 4.60e-39 134
MS.gene87639.t1 MTR_1g025450 40.426 188 85 8 115 296 42 208 2.07e-32 127
MS.gene87639.t1 MTR_7g078310 45.714 140 67 3 82 219 115 247 4.76e-28 110
MS.gene87639.t1 MTR_2g016380 47.934 121 56 4 227 343 18 135 2.07e-27 108
MS.gene87639.t1 MTR_7g111060 27.413 259 154 9 112 343 89 340 2.01e-23 99.8
MS.gene87639.t1 MTR_3g029560 28.125 256 140 9 98 343 16 237 8.69e-23 95.5
MS.gene87639.t1 MTR_7g111050 27.586 261 155 9 110 343 84 337 1.20e-22 97.4
MS.gene87639.t1 MTR_7g079260 58.333 72 14 1 269 340 7 62 2.37e-22 90.5
MS.gene87639.t1 MTR_8g087510 40.458 131 71 5 167 295 23 148 7.79e-20 85.9
MS.gene87639.t1 MTR_3g082370 26.961 204 129 5 131 319 5 203 6.84e-18 82.0
MS.gene87639.t1 MTR_2g047960 46.429 84 44 1 136 219 8 90 2.43e-16 73.9
MS.gene87639.t1 MTR_7g111050 25.339 221 137 7 110 305 79 296 9.61e-13 68.2
MS.gene87639.t1 MTR_1g042480 36.667 90 54 2 9 97 7 94 1.81e-11 61.2
MS.gene87639.t1 MTR_1g042360 36.667 90 54 2 9 97 7 94 1.81e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87639.t1 AT5G45890 55.162 339 143 5 12 343 9 345 5.65e-134 385
MS.gene87639.t1 AT5G50260 54.839 341 138 6 14 342 5 341 3.31e-130 376
MS.gene87639.t1 AT3G48340 54.360 344 139 8 12 342 4 342 3.66e-122 356
MS.gene87639.t1 AT2G34080 47.368 342 169 5 10 344 8 345 1.54e-116 341
MS.gene87639.t1 AT3G49340 49.123 342 149 7 20 344 8 341 2.38e-116 340
MS.gene87639.t1 AT3G19390 49.849 331 162 4 14 343 18 345 3.33e-116 344
MS.gene87639.t1 AT4G35350 50.146 343 155 7 10 343 17 352 4.71e-116 340
MS.gene87639.t1 AT3G48350 54.259 317 136 7 32 343 31 343 2.50e-115 338
MS.gene87639.t1 AT2G27420 47.989 348 164 6 10 344 5 348 1.90e-113 333
MS.gene87639.t1 AT5G43060 52.147 326 142 7 24 342 34 352 1.65e-112 335
MS.gene87639.t1 AT3G19400 50.814 307 147 4 39 343 44 348 3.42e-112 330
MS.gene87639.t1 AT1G06260 49.563 343 154 7 9 342 9 341 8.09e-111 327
MS.gene87639.t1 AT1G20850 50.479 313 149 4 33 343 45 353 4.15e-110 325
MS.gene87639.t1 AT1G47128 51.133 309 139 7 39 342 50 351 7.72e-109 325
MS.gene87639.t1 AT4G36880 49.068 322 152 5 32 343 42 361 9.40e-109 322
MS.gene87639.t1 AT1G29090 46.240 359 165 9 4 344 7 355 3.37e-108 320
MS.gene87639.t1 AT1G29080 44.910 334 162 7 24 344 22 346 1.77e-101 303
MS.gene87639.t1 AT1G09850 49.032 310 155 3 33 342 26 332 3.24e-101 305
MS.gene87639.t1 AT4G23520 48.544 309 145 8 40 342 48 348 1.18e-100 301
MS.gene87639.t1 AT4G11310 46.302 311 150 7 40 342 50 351 3.58e-96 290
MS.gene87639.t1 AT4G11320 44.444 315 150 6 40 342 57 358 1.69e-95 288
MS.gene87639.t1 AT4G11320 44.444 315 150 6 40 342 57 358 1.69e-95 288
MS.gene87639.t1 AT3G43960 42.598 331 183 6 16 342 18 345 7.66e-87 266
MS.gene87639.t1 AT1G29110 41.925 322 164 7 29 343 28 333 1.03e-84 259
MS.gene87639.t1 AT4G35350 48.014 277 128 7 10 277 17 286 3.55e-83 254
MS.gene87639.t1 AT3G19400 48.548 241 121 3 39 277 44 283 1.31e-78 242
MS.gene87639.t1 AT3G48350 50.996 251 114 7 32 277 31 277 1.80e-76 237
MS.gene87639.t1 AT5G60360 43.689 309 155 11 41 343 61 356 1.42e-72 229
MS.gene87639.t1 AT5G60360 43.366 309 155 12 41 343 61 355 5.10e-70 223
MS.gene87639.t1 AT3G45310 41.935 310 161 11 41 344 61 357 1.13e-69 222
MS.gene87639.t1 AT5G60360 43.144 299 155 10 41 333 61 350 1.10e-68 219
MS.gene87639.t1 AT3G45310 41.290 310 162 11 41 344 61 356 3.49e-67 215
MS.gene87639.t1 AT4G39090 39.677 310 154 11 45 335 57 352 5.22e-64 207
MS.gene87639.t1 AT2G21430 38.312 308 161 10 45 335 54 349 2.13e-62 203
MS.gene87639.t1 AT4G16190 37.539 317 165 11 44 340 60 363 1.16e-58 194
MS.gene87639.t1 AT3G54940 37.188 320 164 10 38 335 50 354 2.41e-58 192
MS.gene87639.t1 AT3G54940 36.481 233 131 5 38 259 50 276 9.13e-43 149
MS.gene87639.t1 AT1G02305 26.804 291 164 11 87 343 68 343 9.89e-24 100
MS.gene87639.t1 AT4G01610 27.372 274 160 10 94 335 64 330 5.32e-22 95.9
MS.gene87639.t1 AT4G01610 27.007 274 161 10 94 335 64 330 8.14e-21 92.4
MS.gene87639.t1 AT1G02300 28.829 222 128 8 145 343 146 360 1.16e-19 89.4
MS.gene87639.t1 AT2G22160 41.304 92 52 1 54 145 9 98 2.08e-16 74.3

Find 86 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATATGGTAAAGTTTATA+AGG 0.260293 4.1:+49342253 MS.gene87639:CDS
TTTGCACTGCTTCTATGTTT+AGG 0.272067 4.1:+49342155 MS.gene87639:CDS
AACACCTTGATAAGGGTAAT+TGG 0.282835 4.1:-49342843 None:intergenic
ATCAATGCAGTTACCATTAC+TGG 0.289989 4.1:+49342896 MS.gene87639:CDS
AATATGATAAAAGTGATTAT+TGG 0.303145 4.1:-49342129 None:intergenic
AGGTTGTGAGGGCGGTCTTA+TGG 0.306810 4.1:+49342772 MS.gene87639:CDS
AAATTCATCATTCAAAATCA+TGG 0.364764 4.1:+49342806 MS.gene87639:CDS
CTAATGATGGAACAAAATAT+TGG 0.368724 4.1:+49343098 MS.gene87639:CDS
GAACTCTTGGGGAACCGATT+GGG 0.375688 4.1:+49343129 MS.gene87639:CDS
ATTGGTTGGTTAAGAACTCT+TGG 0.384591 4.1:+49343116 MS.gene87639:CDS
GGTGTTACTGCTGTGGGTTA+TGG 0.389584 4.1:+49343070 MS.gene87639:CDS
CATATTGACTCATCCATTGC+TGG 0.397472 4.1:-49342238 None:intergenic
AGTAATGGTAACTGCATTGA+TGG 0.411113 4.1:-49342894 None:intergenic
TTGGTTGGTTAAGAACTCTT+GGG 0.418479 4.1:+49343117 MS.gene87639:CDS
CAGCAATGGATGAGTCAATA+TGG 0.420934 4.1:+49342239 MS.gene87639:CDS
GCATCAATGGCTACAGAAAT+CGG 0.431804 4.1:-49342977 None:intergenic
TGATTAATGCCTAGTGTGTA+TGG 0.442950 4.1:-49342362 None:intergenic
GGCTACAGAAATCGGTTGAT+TGG 0.443785 4.1:-49342969 None:intergenic
GACTTTCAATTCTACAAAAG+TGG 0.454514 4.1:+49343010 MS.gene87639:CDS
TTCCGTCAACACCTTGATAA+GGG 0.456935 4.1:-49342850 None:intergenic
GTTCCGTCAACACCTTGATA+AGG 0.464383 4.1:-49342851 None:intergenic
TTGATAAGGGTAATTGGCTT+CGG 0.466155 4.1:-49342837 None:intergenic
CATTGTCCTTGGTTCTTCAC+CGG 0.468809 4.1:-49342539 None:intergenic
AACACGTACCACATTGTCCT+TGG 0.469044 4.1:-49342550 None:intergenic
TACCCTTATCAAGGTGTTGA+CGG 0.470988 4.1:+49342848 MS.gene87639:CDS
GTATCCTTCTTCGCCCCAAT+CGG 0.471265 4.1:-49343143 None:intergenic
TTTATAAGGATTCTCAAGAA+AGG 0.473803 4.1:+49342267 MS.gene87639:CDS
TCTCATACATGGAGTCATCT+TGG 0.474251 4.1:-49342211 None:intergenic
TTGCTGGTGCCTCTCATACA+TGG 0.480269 4.1:-49342222 None:intergenic
GTCGGAACCACTAGCATCAA+TGG 0.480791 4.1:-49342990 None:intergenic
AATGCCTGCTCATTGTTAGC+CGG 0.484078 4.1:-49342932 None:intergenic
CAATTCCATCCTCAGTGGAT+TGG 0.485521 4.1:+49342495 MS.gene87639:CDS
TTTCTCCAATCCACTGAGGA+TGG 0.487523 4.1:-49342500 None:intergenic
TTATAAGGATTCTCAAGAAA+GGG 0.488285 4.1:+49342268 MS.gene87639:CDS
AGTCAACATATGAATTCCTT+CGG 0.488980 4.1:-49342684 None:intergenic
GGAACCGATTGGGGCGAAGA+AGG 0.493777 4.1:+49343139 MS.gene87639:CDS
AGAACTCTTGGGGAACCGAT+TGG 0.493995 4.1:+49343128 MS.gene87639:CDS
GGTTATGGTGTTACTAATGA+TGG 0.496107 4.1:+49343085 MS.gene87639:CDS
CAACTCGGTTCCACATGAAC+CGG 0.497716 4.1:-49343041 None:intergenic
AACATCTAGAAACAAATTCA+AGG 0.503470 4.1:+49342415 MS.gene87639:CDS
TCAGTGGATTGGAGAAAGAA+TGG 0.512591 4.1:+49342506 MS.gene87639:CDS
TCTGTAGCCATTGATGCTAG+TGG 0.514851 4.1:+49342983 MS.gene87639:CDS
ATGCCTGCTCATTGTTAGCC+GGG 0.515303 4.1:-49342931 None:intergenic
TGATGGAACAAAATATTGGT+TGG 0.516254 4.1:+49343102 MS.gene87639:CDS
TACATTGAAGCTTTCAACAA+AGG 0.517957 4.1:+49342326 MS.gene87639:CDS
AACTCTTGGGGAACCGATTG+GGG 0.521186 4.1:+49343130 MS.gene87639:CDS
GATGCTGCTGAAGGAATTTG+TGG 0.526173 4.1:+49343187 MS.gene87639:CDS
GGATCATGGTGTTACTGCTG+TGG 0.544384 4.1:+49343063 MS.gene87639:CDS
TACTGGGTATGAAGATGTCC+CGG 0.546767 4.1:+49342913 MS.gene87639:CDS
ACATCTAGAAACAAATTCAA+GGG 0.549047 4.1:+49342416 MS.gene87639:CDS
AGAAATCGGTTGATTGGCCA+CGG 0.552499 4.1:-49342963 None:intergenic
TGTATGAGAGGCACCAGCAA+TGG 0.552809 4.1:+49342225 MS.gene87639:CDS
AGAGGAATTGATGCTGCTGA+AGG 0.553879 4.1:+49343178 MS.gene87639:CDS
GATCATGGTGTTACTGCTGT+GGG 0.556273 4.1:+49343064 MS.gene87639:CDS
GGAATTCATATGTTGACTAG+TGG 0.558520 4.1:+49342689 MS.gene87639:CDS
TCTGCTGTTGCAGCAACCGA+AGG 0.563495 4.1:+49342668 MS.gene87639:CDS
AAAGTGATTATTGGCAGCCA+TGG 0.564524 4.1:-49342120 None:intergenic
CGGTTCATGTGGAACCGAGT+TGG 0.572572 4.1:+49343042 MS.gene87639:CDS
GAAGCCAATTACCCTTATCA+AGG 0.574336 4.1:+49342839 MS.gene87639:CDS
GTGGACCAAGGTTGTGAGGG+CGG 0.578637 4.1:+49342764 MS.gene87639:CDS
TAAGACCGCCCTCACAACCT+TGG 0.579957 4.1:-49342769 None:intergenic
TGGTTGGTTAAGAACTCTTG+GGG 0.580774 4.1:+49343118 MS.gene87639:CDS
TGTGGAACCGAGTTGGATCA+TGG 0.584259 4.1:+49343049 MS.gene87639:CDS
AGGTGTGGACCAAGGTTGTG+AGG 0.589515 4.1:+49342760 MS.gene87639:CDS
AGATGTTGTGAACTCGTCGT+TGG 0.591287 4.1:-49342399 None:intergenic
TTGTGAACTCGTCGTTGGTG+AGG 0.594073 4.1:-49342394 None:intergenic
AATAACAAGCCATACACACT+AGG 0.597189 4.1:+49342353 MS.gene87639:CDS
GAACTCGTCGTTGGTGAGGT+CGG 0.597489 4.1:-49342390 None:intergenic
TGTCCCGGCTAACAATGAGC+AGG 0.597743 4.1:+49342928 MS.gene87639:CDS
GACATCTTCATACCCAGTAA+TGG 0.599023 4.1:-49342909 None:intergenic
AAAGAATGGAGCAGTGACAC+CGG 0.600926 4.1:+49342520 MS.gene87639:CDS
CTCGTTGACTGTGACACGAA+AGG 0.608103 4.1:+49342740 MS.gene87639:CDS
GGTGTGGACCAAGGTTGTGA+GGG 0.610392 4.1:+49342761 MS.gene87639:CDS
TCAATGCAGTTACCATTACT+GGG 0.616110 4.1:+49342897 MS.gene87639:CDS
GGAACATGCAATGCTAACAA+AGG 0.635443 4.1:+49342869 MS.gene87639:CDS
CATCTAGAAACAAATTCAAG+GGG 0.641878 4.1:+49342417 MS.gene87639:CDS
AAGATGACTCCATGTATGAG+AGG 0.643922 4.1:+49342213 MS.gene87639:CDS
ATATGTGCTCTTCAATCACA+AGG 0.656906 4.1:+49342441 MS.gene87639:CDS
GGATACATTATGATGCAAAG+AGG 0.666976 4.1:+49343160 MS.gene87639:CDS
GTGACACCGGTGAAGAACCA+AGG 0.685861 4.1:+49342533 MS.gene87639:CDS
AGTAACACCATGATCCAACT+CGG 0.687543 4.1:-49343056 None:intergenic
GTGAAGAACCAAGGACAATG+TGG 0.702779 4.1:+49342542 MS.gene87639:CDS
ATTCTTTCTCCAATCCACTG+AGG 0.712591 4.1:-49342504 None:intergenic
GACACGAAAGGTGTGGACCA+AGG 0.716503 4.1:+49342752 MS.gene87639:CDS
TGACTGTGACACGAAAGGTG+TGG 0.726786 4.1:+49342745 MS.gene87639:CDS
AAGTACAATTCCATCCTCAG+TGG 0.731735 4.1:+49342490 MS.gene87639:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAATTTATCTTTTGT+AGG + chr4.1:49342629-49342648 MS.gene87639:intron 10.0%
!! AATATGATAAAAGTGATTAT+TGG - chr4.1:49342132-49342151 None:intergenic 15.0%
!! AAATTCATCATTCAAAATCA+TGG + chr4.1:49342806-49342825 MS.gene87639:CDS 20.0%
!! TCAATATGGTAAAGTTTATA+AGG + chr4.1:49342253-49342272 MS.gene87639:CDS 20.0%
! AACATCTAGAAACAAATTCA+AGG + chr4.1:49342415-49342434 MS.gene87639:CDS 25.0%
! ACATCTAGAAACAAATTCAA+GGG + chr4.1:49342416-49342435 MS.gene87639:CDS 25.0%
! TTATAAGGATTCTCAAGAAA+GGG + chr4.1:49342268-49342287 MS.gene87639:CDS 25.0%
! TTTATAAGGATTCTCAAGAA+AGG + chr4.1:49342267-49342286 MS.gene87639:CDS 25.0%
!! ACTTTTGTAGAATTGAAAGT+CGG - chr4.1:49343011-49343030 None:intergenic 25.0%
!! CTAATGATGGAACAAAATAT+TGG + chr4.1:49343098-49343117 MS.gene87639:CDS 25.0%
AGTCAACATATGAATTCCTT+CGG - chr4.1:49342687-49342706 None:intergenic 30.0%
CATCTAGAAACAAATTCAAG+GGG + chr4.1:49342417-49342436 MS.gene87639:CDS 30.0%
GACTTTCAATTCTACAAAAG+TGG + chr4.1:49343010-49343029 MS.gene87639:CDS 30.0%
TACATTGAAGCTTTCAACAA+AGG + chr4.1:49342326-49342345 MS.gene87639:CDS 30.0%
TGATGGAACAAAATATTGGT+TGG + chr4.1:49343102-49343121 MS.gene87639:CDS 30.0%
! ATCTTTTGTAGGATGTTGTT+GGG + chr4.1:49342640-49342659 MS.gene87639:intron 30.0%
! TATCTTTTGTAGGATGTTGT+TGG + chr4.1:49342639-49342658 MS.gene87639:intron 30.0%
!! TACAAAAGTGGTGTTTTTAC+CGG + chr4.1:49343022-49343041 MS.gene87639:CDS 30.0%
AACACCTTGATAAGGGTAAT+TGG - chr4.1:49342846-49342865 None:intergenic 35.0%
AATAACAAGCCATACACACT+AGG + chr4.1:49342353-49342372 MS.gene87639:CDS 35.0%
AGTAATGGTAACTGCATTGA+TGG - chr4.1:49342897-49342916 None:intergenic 35.0%
ATATGTGCTCTTCAATCACA+AGG + chr4.1:49342441-49342460 MS.gene87639:CDS 35.0%
ATCAATGCAGTTACCATTAC+TGG + chr4.1:49342896-49342915 MS.gene87639:CDS 35.0%
GGATACATTATGATGCAAAG+AGG + chr4.1:49343160-49343179 MS.gene87639:CDS 35.0%
TCAATGCAGTTACCATTACT+GGG + chr4.1:49342897-49342916 MS.gene87639:CDS 35.0%
TGATTAATGCCTAGTGTGTA+TGG - chr4.1:49342365-49342384 None:intergenic 35.0%
TTTGCACTGCTTCTATGTTT+AGG + chr4.1:49342155-49342174 MS.gene87639:CDS 35.0%
! ATTGGTTGGTTAAGAACTCT+TGG + chr4.1:49343116-49343135 MS.gene87639:CDS 35.0%
! GGAATTCATATGTTGACTAG+TGG + chr4.1:49342689-49342708 MS.gene87639:CDS 35.0%
! TTGATAAGGGTAATTGGCTT+CGG - chr4.1:49342840-49342859 None:intergenic 35.0%
! TTGGTTGGTTAAGAACTCTT+GGG + chr4.1:49343117-49343136 MS.gene87639:CDS 35.0%
!! GGTTATGGTGTTACTAATGA+TGG + chr4.1:49343085-49343104 MS.gene87639:CDS 35.0%
AAGATGACTCCATGTATGAG+AGG + chr4.1:49342213-49342232 MS.gene87639:CDS 40.0%
AAGTACAATTCCATCCTCAG+TGG + chr4.1:49342490-49342509 MS.gene87639:CDS 40.0%
AGTAACACCATGATCCAACT+CGG - chr4.1:49343059-49343078 None:intergenic 40.0%
ATTCTTTCTCCAATCCACTG+AGG - chr4.1:49342507-49342526 None:intergenic 40.0%
CAGCAATGGATGAGTCAATA+TGG + chr4.1:49342239-49342258 MS.gene87639:CDS 40.0%
GAAGCCAATTACCCTTATCA+AGG + chr4.1:49342839-49342858 MS.gene87639:CDS 40.0%
GACATCTTCATACCCAGTAA+TGG - chr4.1:49342912-49342931 None:intergenic 40.0%
GCATCAATGGCTACAGAAAT+CGG - chr4.1:49342980-49342999 None:intergenic 40.0%
GGAACATGCAATGCTAACAA+AGG + chr4.1:49342869-49342888 MS.gene87639:CDS 40.0%
TCTCATACATGGAGTCATCT+TGG - chr4.1:49342214-49342233 None:intergenic 40.0%
TTCCGTCAACACCTTGATAA+GGG - chr4.1:49342853-49342872 None:intergenic 40.0%
! TGGTTGGTTAAGAACTCTTG+GGG + chr4.1:49343118-49343137 MS.gene87639:CDS 40.0%
!! CATATTGACTCATCCATTGC+TGG - chr4.1:49342241-49342260 None:intergenic 40.0%
!! TACCCTTATCAAGGTGTTGA+CGG + chr4.1:49342848-49342867 MS.gene87639:CDS 40.0%
!! TCAGTGGATTGGAGAAAGAA+TGG + chr4.1:49342506-49342525 MS.gene87639:CDS 40.0%
AAAGAATGGAGCAGTGACAC+CGG + chr4.1:49342520-49342539 MS.gene87639:CDS 45.0%
AACACGTACCACATTGTCCT+TGG - chr4.1:49342553-49342572 None:intergenic 45.0%
AATGCCTGCTCATTGTTAGC+CGG - chr4.1:49342935-49342954 None:intergenic 45.0%
AGAGGAATTGATGCTGCTGA+AGG + chr4.1:49343178-49343197 MS.gene87639:CDS 45.0%
AGATGTTGTGAACTCGTCGT+TGG - chr4.1:49342402-49342421 None:intergenic 45.0%
CAATTCCATCCTCAGTGGAT+TGG + chr4.1:49342495-49342514 MS.gene87639:CDS 45.0%
GATGCTGCTGAAGGAATTTG+TGG + chr4.1:49343187-49343206 MS.gene87639:CDS 45.0%
GGCTACAGAAATCGGTTGAT+TGG - chr4.1:49342972-49342991 None:intergenic 45.0%
GTGAAGAACCAAGGACAATG+TGG + chr4.1:49342542-49342561 MS.gene87639:CDS 45.0%
GTTCCGTCAACACCTTGATA+AGG - chr4.1:49342854-49342873 None:intergenic 45.0%
TACTGGGTATGAAGATGTCC+CGG + chr4.1:49342913-49342932 MS.gene87639:CDS 45.0%
TCTGTAGCCATTGATGCTAG+TGG + chr4.1:49342983-49343002 MS.gene87639:CDS 45.0%
TTTCTCCAATCCACTGAGGA+TGG - chr4.1:49342503-49342522 None:intergenic 45.0%
! AGAAATCGGTTGATTGGCCA+CGG - chr4.1:49342966-49342985 None:intergenic 45.0%
! CATTGTCCTTGGTTCTTCAC+CGG - chr4.1:49342542-49342561 None:intergenic 45.0%
!! GATCATGGTGTTACTGCTGT+GGG + chr4.1:49343064-49343083 MS.gene87639:CDS 45.0%
!!! GGTGTTTTTACCGGTTCATG+TGG + chr4.1:49343031-49343050 MS.gene87639:CDS 45.0%
AACTCTTGGGGAACCGATTG+GGG + chr4.1:49343130-49343149 MS.gene87639:CDS 50.0%
AGAACTCTTGGGGAACCGAT+TGG + chr4.1:49343128-49343147 MS.gene87639:CDS 50.0%
ATGCCTGCTCATTGTTAGCC+GGG - chr4.1:49342934-49342953 None:intergenic 50.0%
CAACTCGGTTCCACATGAAC+CGG - chr4.1:49343044-49343063 None:intergenic 50.0%
GAACTCTTGGGGAACCGATT+GGG + chr4.1:49343129-49343148 MS.gene87639:CDS 50.0%
GTATCCTTCTTCGCCCCAAT+CGG - chr4.1:49343146-49343165 None:intergenic 50.0%
GTCGGAACCACTAGCATCAA+TGG - chr4.1:49342993-49343012 None:intergenic 50.0%
TGACTGTGACACGAAAGGTG+TGG + chr4.1:49342745-49342764 MS.gene87639:CDS 50.0%
TTGCTGGTGCCTCTCATACA+TGG - chr4.1:49342225-49342244 None:intergenic 50.0%
TTGTGAACTCGTCGTTGGTG+AGG - chr4.1:49342397-49342416 None:intergenic 50.0%
! CTCGTTGACTGTGACACGAA+AGG + chr4.1:49342740-49342759 MS.gene87639:CDS 50.0%
! TGTGGAACCGAGTTGGATCA+TGG + chr4.1:49343049-49343068 MS.gene87639:CDS 50.0%
!! GGATCATGGTGTTACTGCTG+TGG + chr4.1:49343063-49343082 MS.gene87639:CDS 50.0%
!! GGTGTTACTGCTGTGGGTTA+TGG + chr4.1:49343070-49343089 MS.gene87639:CDS 50.0%
!! TGTATGAGAGGCACCAGCAA+TGG + chr4.1:49342225-49342244 MS.gene87639:CDS 50.0%
AGGTGTGGACCAAGGTTGTG+AGG + chr4.1:49342760-49342779 MS.gene87639:CDS 55.0%
AGGTTGTGAGGGCGGTCTTA+TGG + chr4.1:49342772-49342791 MS.gene87639:CDS 55.0%
CGGTTCATGTGGAACCGAGT+TGG + chr4.1:49343042-49343061 MS.gene87639:CDS 55.0%
GGTGTGGACCAAGGTTGTGA+GGG + chr4.1:49342761-49342780 MS.gene87639:CDS 55.0%
GTGACACCGGTGAAGAACCA+AGG + chr4.1:49342533-49342552 MS.gene87639:CDS 55.0%
TAAGACCGCCCTCACAACCT+TGG - chr4.1:49342772-49342791 None:intergenic 55.0%
TCTGCTGTTGCAGCAACCGA+AGG + chr4.1:49342668-49342687 MS.gene87639:CDS 55.0%
TGTCCCGGCTAACAATGAGC+AGG + chr4.1:49342928-49342947 MS.gene87639:CDS 55.0%
! GAACTCGTCGTTGGTGAGGT+CGG - chr4.1:49342393-49342412 None:intergenic 55.0%
! GACACGAAAGGTGTGGACCA+AGG + chr4.1:49342752-49342771 MS.gene87639:CDS 55.0%
! GCAGGCATTGCAAAAAGCCG+TGG + chr4.1:49342946-49342965 MS.gene87639:CDS 55.0%
GGAACCGATTGGGGCGAAGA+AGG + chr4.1:49343139-49343158 MS.gene87639:CDS 60.0%
GTGGACCAAGGTTGTGAGGG+CGG + chr4.1:49342764-49342783 MS.gene87639:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 49342122 49343243 49342122 ID=MS.gene87639
chr4.1 mRNA 49342122 49343243 49342122 ID=MS.gene87639.t1;Parent=MS.gene87639
chr4.1 exon 49342122 49342563 49342122 ID=MS.gene87639.t1.exon1;Parent=MS.gene87639.t1
chr4.1 CDS 49342122 49342563 49342122 ID=cds.MS.gene87639.t1;Parent=MS.gene87639.t1
chr4.1 exon 49342651 49343243 49342651 ID=MS.gene87639.t1.exon2;Parent=MS.gene87639.t1
chr4.1 CDS 49342651 49343243 49342651 ID=cds.MS.gene87639.t1;Parent=MS.gene87639.t1
Gene Sequence

>MS.gene87639

ATGGCTGCCAATAATCACTTTTATCATATTTCATTTGCACTGCTTCTATGTTTAGGATTGTTTGCTATTCAAGTCACTTCTCGCACTCTCCAAGATGACTCCATGTATGAGAGGCACCAGCAATGGATGAGTCAATATGGTAAAGTTTATAAGGATTCTCAAGAAAGGGAGAAGCGTTTCAAGATATTCACTGAAAACGTGAATTACATTGAAGCTTTCAACAAAGGTGACAATAACAAGCCATACACACTAGGCATTAATCAATTTGCCGACCTCACCAACGACGAGTTCACAACATCTAGAAACAAATTCAAGGGGCATATGTGCTCTTCAATCACAAGGACAAGTACTTTTATGTATGAAAATGCAAGTACAATTCCATCCTCAGTGGATTGGAGAAAGAATGGAGCAGTGACACCGGTGAAGAACCAAGGACAATGTGGTACGTGTTAATCTAATATATAATGCATTCAATGATTCGAAATTAATTATTGTCTAACTCTAGTTAATTTTAATTTATCTTTTGTAGGATGTTGTTGGGCGTTTTCTGCTGTTGCAGCAACCGAAGGAATTCATATGTTGACTAGTGGAAAGTTGATCTCTTTATCAGAACAAGAACTCGTTGACTGTGACACGAAAGGTGTGGACCAAGGTTGTGAGGGCGGTCTTATGGACGATGCTTTCAAATTCATCATTCAAAATCATGGACTCGCTACCGAAGCCAATTACCCTTATCAAGGTGTTGACGGAACATGCAATGCTAACAAAGGATCCATCAATGCAGTTACCATTACTGGGTATGAAGATGTCCCGGCTAACAATGAGCAGGCATTGCAAAAAGCCGTGGCCAATCAACCGATTTCTGTAGCCATTGATGCTAGTGGTTCCGACTTTCAATTCTACAAAAGTGGTGTTTTTACCGGTTCATGTGGAACCGAGTTGGATCATGGTGTTACTGCTGTGGGTTATGGTGTTACTAATGATGGAACAAAATATTGGTTGGTTAAGAACTCTTGGGGAACCGATTGGGGCGAAGAAGGATACATTATGATGCAAAGAGGAATTGATGCTGCTGAAGGAATTTGTGGCATTGCAATGCAAGCATCATTCCCTACTGCTTAA
Protein sequence

>MS.gene87639.t1

MAANNHFYHISFALLLCLGLFAIQVTSRTLQDDSMYERHQQWMSQYGKVYKDSQEREKRFKIFTENVNYIEAFNKGDNNKPYTLGINQFADLTNDEFTTSRNKFKGHMCSSITRTSTFMYENASTIPSSVDWRKNGAVTPVKNQGQCGCCWAFSAVAATEGIHMLTSGKLISLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLATEANYPYQGVDGTCNANKGSINAVTITGYEDVPANNEQALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVTNDGTKYWLVKNSWGTDWGEEGYIMMQRGIDAAEGICGIAMQASFPTA