Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95401.t1 | XP_003599163.2 | 66.2 | 219 | 64 | 7 | 1 | 214 | 141 | 354 | 2.50E-66 | 262.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95401.t1 | Q8L4D8 | 65.1 | 43 | 15 | 0 | 307 | 349 | 115 | 157 | 3.8e-07 | 57.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95401.t1 | B7FJY3 | 66.2 | 219 | 64 | 7 | 1 | 214 | 141 | 354 | 1.8e-66 | 262.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene95401 | 0.835911 | 1.27E-56 | -1.69E-46 |
| MS.gene049350 | MS.gene95401 | 0.840366 | 9.08E-58 | -1.69E-46 |
| MS.gene049711 | MS.gene95401 | 0.826464 | 2.67E-54 | -1.69E-46 |
| MS.gene049807 | MS.gene95401 | 0.822572 | 2.20E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene95401 | 0.8219 | 3.16E-53 | -1.69E-46 |
| MS.gene049887 | MS.gene95401 | 0.820612 | 6.26E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene95401 | 0.805618 | 1.22E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene95401 | 0.802103 | 6.58E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene95401 | 0.828963 | 6.71E-55 | -1.69E-46 |
| MS.gene050901 | MS.gene95401 | 0.811093 | 8.32E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene95401 | 0.806147 | 9.47E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene95401 | 0.836398 | 9.58E-57 | -1.69E-46 |
| MS.gene051388 | MS.gene95401 | 0.804349 | 2.25E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene95401 | 0.813265 | 2.79E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene95401 | 0.812444 | 4.23E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene95401 | 0.875824 | 2.27E-68 | -1.69E-46 |
| MS.gene051720 | MS.gene95401 | 0.876913 | 9.57E-69 | -1.69E-46 |
| MS.gene051744 | MS.gene95401 | 0.801551 | 8.53E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene95401 | 0.805088 | 1.58E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene95401 | 0.842163 | 3.06E-58 | -1.69E-46 |
| MS.gene052335 | MS.gene95401 | 0.808118 | 3.62E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene95401 | 0.834938 | 2.24E-56 | -1.69E-46 |
| MS.gene052516 | MS.gene95401 | 0.857278 | 1.82E-62 | -1.69E-46 |
| MS.gene052665 | MS.gene95401 | 0.836438 | 9.36E-57 | -1.69E-46 |
| MS.gene052673 | MS.gene95401 | -0.810904 | 9.14E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene95401 | 0.836468 | 9.19E-57 | -1.69E-46 |
| MS.gene053079 | MS.gene95401 | 0.810178 | 1.31E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene95401 | 0.875689 | 2.53E-68 | -1.69E-46 |
| MS.gene053164 | MS.gene95401 | 0.805075 | 1.59E-49 | -1.69E-46 |
| MS.gene053171 | MS.gene95401 | 0.810825 | 9.51E-51 | -1.69E-46 |
| MS.gene053174 | MS.gene95401 | 0.807136 | 5.86E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene95401 | 0.803699 | 3.08E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene95401 | 0.821494 | 3.92E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene95401 | 0.881221 | 2.87E-70 | -1.69E-46 |
| MS.gene053599 | MS.gene95401 | 0.832475 | 9.26E-56 | -1.69E-46 |
| MS.gene053678 | MS.gene95401 | 0.807126 | 5.89E-50 | -1.69E-46 |
| MS.gene054550 | MS.gene95401 | 0.801705 | 7.94E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene95401 | 0.870917 | 1.02E-66 | -1.69E-46 |
| MS.gene05458 | MS.gene95401 | 0.802789 | 4.75E-49 | -1.69E-46 |
| MS.gene054991 | MS.gene95401 | 0.809681 | 1.68E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene95401 | 0.880976 | 3.52E-70 | -1.69E-46 |
| MS.gene055466 | MS.gene95401 | 0.875643 | 2.62E-68 | -1.69E-46 |
| MS.gene055467 | MS.gene95401 | 0.830511 | 2.82E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene95401 | 0.868814 | 4.93E-66 | -1.69E-46 |
| MS.gene055469 | MS.gene95401 | 0.861521 | 9.68E-64 | -1.69E-46 |
| MS.gene055513 | MS.gene95401 | 0.809082 | 2.26E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene95401 | 0.86004 | 2.72E-63 | -1.69E-46 |
| MS.gene055580 | MS.gene95401 | -0.843318 | 1.51E-58 | -1.69E-46 |
| MS.gene055890 | MS.gene95401 | 0.817051 | 4.03E-52 | -1.69E-46 |
| MS.gene055891 | MS.gene95401 | 0.844917 | 5.62E-59 | -1.69E-46 |
| MS.gene056005 | MS.gene95401 | 0.817374 | 3.41E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene95401 | -0.833896 | 4.10E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene95401 | 0.844956 | 5.48E-59 | -1.69E-46 |
| MS.gene056522 | MS.gene95401 | -0.809299 | 2.03E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene95401 | 0.817097 | 3.93E-52 | -1.69E-46 |
| MS.gene058087 | MS.gene95401 | 0.829966 | 3.83E-55 | -1.69E-46 |
| MS.gene058339 | MS.gene95401 | 0.809532 | 1.81E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene95401 | 0.829625 | 4.64E-55 | -1.69E-46 |
| MS.gene058668 | MS.gene95401 | 0.816883 | 4.39E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene95401 | 0.829324 | 5.49E-55 | -1.69E-46 |
| MS.gene058945 | MS.gene95401 | 0.812309 | 4.52E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene95401 | 0.805054 | 1.61E-49 | -1.69E-46 |
| MS.gene059426 | MS.gene95401 | 0.804733 | 1.87E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene95401 | 0.809601 | 1.75E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene95401 | 0.810984 | 8.78E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene95401 | 0.807263 | 5.51E-50 | -1.69E-46 |
| MS.gene060519 | MS.gene95401 | 0.824706 | 6.98E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene95401 | 0.83956 | 1.47E-57 | -1.69E-46 |
| MS.gene060701 | MS.gene95401 | 0.80366 | 3.14E-49 | -1.69E-46 |
| MS.gene060884 | MS.gene95401 | 0.809208 | 2.12E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene95401 | 0.805249 | 1.46E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95401.t1 | MTR_3g029640 | 66.210 | 219 | 64 | 7 | 1 | 214 | 141 | 354 | 5.16e-86 | 264 |
| MS.gene95401.t1 | MTR_3g029620 | 66.832 | 202 | 57 | 4 | 19 | 214 | 166 | 363 | 6.69e-82 | 254 |
| MS.gene95401.t1 | MTR_3g029800 | 56.250 | 224 | 79 | 5 | 1 | 219 | 142 | 351 | 1.21e-72 | 229 |
| MS.gene95401.t1 | MTR_7g005990 | 53.778 | 225 | 71 | 6 | 1 | 214 | 145 | 347 | 3.06e-57 | 190 |
| MS.gene95401.t1 | MTR_3g030560 | 50.450 | 222 | 97 | 6 | 1 | 214 | 147 | 363 | 4.12e-55 | 185 |
| MS.gene95401.t1 | MTR_3g047980 | 53.646 | 192 | 66 | 6 | 23 | 212 | 177 | 347 | 1.09e-51 | 176 |
| MS.gene95401.t1 | MTR_3g092000 | 51.741 | 201 | 83 | 6 | 19 | 212 | 194 | 387 | 9.45e-51 | 174 |
| MS.gene95401.t1 | MTR_3g091990 | 51.196 | 209 | 86 | 8 | 19 | 219 | 181 | 381 | 1.23e-49 | 171 |
| MS.gene95401.t1 | MTR_8g024540 | 98.876 | 89 | 1 | 0 | 261 | 349 | 83 | 171 | 1.24e-49 | 174 |
| MS.gene95401.t1 | MTR_6g018390 | 49.751 | 201 | 89 | 6 | 19 | 218 | 169 | 358 | 1.98e-49 | 169 |
| MS.gene95401.t1 | MTR_3g029650 | 49.038 | 208 | 92 | 7 | 14 | 213 | 149 | 350 | 1.10e-46 | 169 |
| MS.gene95401.t1 | MTR_3g029650 | 38.785 | 214 | 110 | 8 | 15 | 213 | 536 | 743 | 4.87e-26 | 109 |
| MS.gene95401.t1 | MTR_3g030050 | 45.532 | 235 | 75 | 7 | 24 | 214 | 186 | 411 | 4.12e-46 | 162 |
| MS.gene95401.t1 | MTR_6g018315 | 44.156 | 231 | 114 | 6 | 18 | 237 | 153 | 379 | 7.69e-45 | 158 |
| MS.gene95401.t1 | MTR_2g047180 | 48.309 | 207 | 81 | 9 | 19 | 213 | 163 | 355 | 9.80e-44 | 155 |
| MS.gene95401.t1 | MTR_6g018360 | 44.156 | 231 | 111 | 7 | 18 | 235 | 168 | 393 | 1.60e-43 | 155 |
| MS.gene95401.t1 | MTR_6g027100 | 45.226 | 199 | 93 | 6 | 19 | 212 | 177 | 364 | 2.34e-42 | 152 |
| MS.gene95401.t1 | MTR_3g058460 | 43.396 | 212 | 99 | 7 | 18 | 214 | 161 | 366 | 3.11e-40 | 145 |
| MS.gene95401.t1 | MTR_6g027040 | 44.118 | 204 | 98 | 6 | 19 | 218 | 177 | 368 | 2.61e-39 | 143 |
| MS.gene95401.t1 | MTR_3g037710 | 44.019 | 209 | 90 | 7 | 19 | 208 | 47 | 247 | 5.55e-39 | 140 |
| MS.gene95401.t1 | MTR_3g030440 | 43.578 | 218 | 98 | 9 | 6 | 220 | 157 | 352 | 2.84e-38 | 140 |
| MS.gene95401.t1 | MTR_3g030480 | 43.578 | 218 | 98 | 9 | 6 | 220 | 156 | 351 | 3.05e-38 | 140 |
| MS.gene95401.t1 | MTR_3g030360 | 46.354 | 192 | 75 | 6 | 23 | 213 | 176 | 340 | 5.82e-38 | 139 |
| MS.gene95401.t1 | MTR_3g030380 | 43.925 | 214 | 91 | 8 | 6 | 214 | 158 | 347 | 2.84e-37 | 137 |
| MS.gene95401.t1 | MTR_3g030355 | 44.495 | 218 | 89 | 12 | 17 | 213 | 178 | 384 | 2.25e-36 | 135 |
| MS.gene95401.t1 | MTR_5g042230 | 49.180 | 183 | 76 | 9 | 40 | 212 | 13 | 188 | 6.16e-36 | 129 |
| MS.gene95401.t1 | MTR_3g029750 | 41.475 | 217 | 104 | 9 | 2 | 211 | 174 | 374 | 1.03e-35 | 134 |
| MS.gene95401.t1 | MTR_6g018400 | 42.289 | 201 | 105 | 7 | 19 | 218 | 171 | 361 | 1.67e-35 | 133 |
| MS.gene95401.t1 | MTR_1g007260 | 43.662 | 213 | 100 | 11 | 11 | 214 | 177 | 378 | 8.97e-35 | 131 |
| MS.gene95401.t1 | MTR_1g026850 | 45.755 | 212 | 85 | 12 | 19 | 214 | 157 | 354 | 2.99e-33 | 127 |
| MS.gene95401.t1 | MTR_1g007250 | 51.266 | 158 | 64 | 6 | 63 | 214 | 8 | 158 | 4.02e-33 | 121 |
| MS.gene95401.t1 | MTR_3g029670 | 43.137 | 204 | 96 | 10 | 17 | 211 | 182 | 374 | 4.04e-32 | 124 |
| MS.gene95401.t1 | MTR_1g049170 | 44.330 | 194 | 84 | 8 | 31 | 213 | 193 | 373 | 5.49e-32 | 124 |
| MS.gene95401.t1 | MTR_3g029950 | 41.709 | 199 | 101 | 5 | 16 | 214 | 165 | 348 | 9.81e-31 | 120 |
| MS.gene95401.t1 | MTR_3g030080 | 41.096 | 219 | 109 | 10 | 6 | 214 | 154 | 362 | 1.09e-30 | 120 |
| MS.gene95401.t1 | MTR_3g029840 | 47.531 | 162 | 76 | 4 | 16 | 177 | 165 | 317 | 3.11e-30 | 118 |
| MS.gene95401.t1 | MTR_6g018370 | 45.833 | 144 | 66 | 5 | 19 | 153 | 111 | 251 | 2.04e-29 | 114 |
| MS.gene95401.t1 | MTR_3g029900 | 40.777 | 206 | 106 | 6 | 16 | 220 | 265 | 455 | 9.48e-29 | 116 |
| MS.gene95401.t1 | MTR_3g029920 | 41.951 | 205 | 101 | 12 | 18 | 213 | 173 | 368 | 1.05e-28 | 115 |
| MS.gene95401.t1 | MTR_1g016540 | 46.429 | 168 | 66 | 7 | 63 | 213 | 8 | 168 | 3.65e-28 | 108 |
| MS.gene95401.t1 | MTR_1g016570 | 42.458 | 179 | 71 | 8 | 44 | 213 | 194 | 349 | 5.50e-26 | 107 |
| MS.gene95401.t1 | MTR_1g007220 | 37.563 | 197 | 79 | 9 | 24 | 212 | 3 | 163 | 3.07e-23 | 95.1 |
| MS.gene95401.t1 | MTR_3g029870 | 37.879 | 198 | 83 | 6 | 16 | 213 | 157 | 314 | 4.32e-22 | 95.9 |
| MS.gene95401.t1 | MTR_8g035995 | 51.064 | 94 | 40 | 2 | 65 | 153 | 1 | 93 | 4.25e-18 | 80.5 |
| MS.gene95401.t1 | MTR_5g078450 | 44.853 | 136 | 42 | 6 | 94 | 223 | 7 | 115 | 6.10e-18 | 79.3 |
| MS.gene95401.t1 | MTR_4g022880 | 39.241 | 158 | 74 | 5 | 68 | 214 | 16 | 162 | 2.82e-17 | 79.3 |
| MS.gene95401.t1 | MTR_1g007920 | 71.429 | 56 | 16 | 0 | 294 | 349 | 111 | 166 | 3.22e-17 | 82.8 |
| MS.gene95401.t1 | MTR_1g007920 | 71.429 | 56 | 16 | 0 | 294 | 349 | 86 | 141 | 3.53e-17 | 82.8 |
| MS.gene95401.t1 | MTR_3g091560 | 67.241 | 58 | 19 | 0 | 292 | 349 | 99 | 156 | 7.75e-17 | 81.6 |
| MS.gene95401.t1 | MTR_4g050480 | 78.261 | 46 | 10 | 0 | 304 | 349 | 95 | 140 | 1.38e-15 | 77.8 |
| MS.gene95401.t1 | MTR_4g050480 | 78.261 | 46 | 10 | 0 | 304 | 349 | 96 | 141 | 1.41e-15 | 77.8 |
| MS.gene95401.t1 | MTR_8g102400 | 51.685 | 89 | 36 | 2 | 262 | 349 | 74 | 156 | 8.90e-15 | 75.5 |
| MS.gene95401.t1 | MTR_1g007200 | 45.000 | 100 | 48 | 2 | 111 | 209 | 1 | 94 | 5.46e-14 | 68.6 |
| MS.gene95401.t1 | MTR_8g014580 | 75.000 | 48 | 12 | 0 | 302 | 349 | 123 | 170 | 7.05e-14 | 72.8 |
| MS.gene95401.t1 | MTR_1g103070 | 66.102 | 59 | 17 | 1 | 294 | 349 | 122 | 180 | 3.20e-13 | 70.9 |
| MS.gene95401.t1 | MTR_0019s0070 | 87.179 | 39 | 5 | 0 | 307 | 345 | 119 | 157 | 4.41e-13 | 70.5 |
| MS.gene95401.t1 | MTR_1g101330 | 80.952 | 42 | 8 | 0 | 304 | 345 | 114 | 155 | 5.39e-13 | 70.1 |
| MS.gene95401.t1 | MTR_4g102840 | 76.744 | 43 | 10 | 0 | 303 | 345 | 86 | 128 | 3.84e-12 | 67.4 |
| MS.gene95401.t1 | MTR_7g114870 | 79.070 | 43 | 9 | 0 | 307 | 349 | 108 | 150 | 4.01e-12 | 67.0 |
| MS.gene95401.t1 | MTR_0047s0040 | 63.043 | 46 | 17 | 0 | 304 | 349 | 100 | 145 | 4.34e-12 | 67.4 |
| MS.gene95401.t1 | MTR_3g104570 | 63.830 | 47 | 17 | 0 | 303 | 349 | 89 | 135 | 6.48e-12 | 66.6 |
| MS.gene95401.t1 | MTR_7g114700 | 63.043 | 46 | 17 | 0 | 304 | 349 | 134 | 179 | 2.04e-11 | 65.1 |
| MS.gene95401.t1 | MTR_1g095740 | 60.870 | 46 | 18 | 0 | 304 | 349 | 140 | 185 | 7.90e-11 | 63.5 |
| MS.gene95401.t1 | MTR_8g074730 | 65.217 | 46 | 16 | 0 | 303 | 348 | 69 | 114 | 8.64e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95401.t1 | AT4G00820 | 63.529 | 85 | 29 | 1 | 267 | 349 | 92 | 176 | 2.44e-23 | 101 |
| MS.gene95401.t1 | AT1G01110 | 95.918 | 49 | 2 | 0 | 301 | 349 | 117 | 165 | 2.08e-22 | 98.6 |
| MS.gene95401.t1 | AT4G10640 | 51.765 | 85 | 35 | 1 | 265 | 349 | 66 | 144 | 1.02e-19 | 90.1 |
| MS.gene95401.t1 | AT3G49380 | 52.000 | 75 | 36 | 0 | 275 | 349 | 80 | 154 | 1.30e-15 | 77.4 |
| MS.gene95401.t1 | AT3G49260 | 67.857 | 56 | 18 | 0 | 294 | 349 | 109 | 164 | 3.10e-15 | 77.0 |
| MS.gene95401.t1 | AT3G49260 | 67.857 | 56 | 18 | 0 | 294 | 349 | 109 | 164 | 3.10e-15 | 77.0 |
| MS.gene95401.t1 | AT3G49260 | 67.857 | 56 | 18 | 0 | 294 | 349 | 109 | 164 | 3.10e-15 | 77.0 |
| MS.gene95401.t1 | AT3G49260 | 67.857 | 56 | 18 | 0 | 294 | 349 | 109 | 164 | 3.20e-15 | 77.0 |
| MS.gene95401.t1 | AT3G22190 | 73.469 | 49 | 13 | 0 | 301 | 349 | 84 | 132 | 4.05e-15 | 76.6 |
| MS.gene95401.t1 | AT3G22190 | 73.469 | 49 | 13 | 0 | 301 | 349 | 84 | 132 | 4.05e-15 | 76.6 |
| MS.gene95401.t1 | AT3G22190 | 73.469 | 49 | 13 | 0 | 301 | 349 | 84 | 132 | 4.05e-15 | 76.6 |
| MS.gene95401.t1 | AT3G22190 | 73.469 | 49 | 13 | 0 | 301 | 349 | 84 | 132 | 4.05e-15 | 76.6 |
| MS.gene95401.t1 | AT2G26180 | 74.468 | 47 | 12 | 0 | 303 | 349 | 82 | 128 | 4.34e-15 | 76.3 |
| MS.gene95401.t1 | AT2G17030 | 30.594 | 219 | 120 | 9 | 22 | 214 | 169 | 381 | 7.62e-15 | 75.5 |
| MS.gene95401.t1 | AT2G17036 | 30.734 | 218 | 125 | 8 | 18 | 214 | 162 | 374 | 6.18e-14 | 72.8 |
| MS.gene95401.t1 | AT2G17036 | 30.734 | 218 | 125 | 8 | 18 | 214 | 163 | 375 | 6.38e-14 | 72.8 |
| MS.gene95401.t1 | AT5G62070 | 79.545 | 44 | 9 | 0 | 302 | 345 | 114 | 157 | 2.45e-13 | 70.9 |
| MS.gene95401.t1 | AT3G16490 | 70.588 | 51 | 15 | 0 | 299 | 349 | 101 | 151 | 6.24e-13 | 69.7 |
| MS.gene95401.t1 | AT5G07240 | 63.636 | 55 | 19 | 1 | 292 | 345 | 92 | 146 | 1.12e-12 | 68.9 |
| MS.gene95401.t1 | AT5G07240 | 63.636 | 55 | 19 | 1 | 292 | 345 | 138 | 192 | 1.12e-12 | 69.3 |
| MS.gene95401.t1 | AT4G14750 | 71.739 | 46 | 13 | 0 | 304 | 349 | 104 | 149 | 1.71e-12 | 68.6 |
| MS.gene95401.t1 | AT4G14750 | 71.739 | 46 | 13 | 0 | 304 | 349 | 163 | 208 | 1.92e-12 | 68.6 |
| MS.gene95401.t1 | AT4G14750 | 71.739 | 46 | 13 | 0 | 304 | 349 | 163 | 208 | 2.09e-12 | 68.2 |
| MS.gene95401.t1 | AT4G29150 | 67.347 | 49 | 16 | 0 | 301 | 349 | 127 | 175 | 4.05e-12 | 67.4 |
| MS.gene95401.t1 | AT5G13460 | 64.000 | 50 | 18 | 0 | 300 | 349 | 106 | 155 | 1.31e-11 | 65.9 |
| MS.gene95401.t1 | AT3G51380 | 50.794 | 63 | 30 | 1 | 286 | 348 | 19 | 80 | 2.24e-11 | 60.5 |
| MS.gene95401.t1 | AT3G52290 | 65.217 | 46 | 16 | 0 | 304 | 349 | 107 | 152 | 2.28e-11 | 65.1 |
| MS.gene95401.t1 | AT1G18840 | 56.250 | 48 | 21 | 0 | 299 | 346 | 103 | 150 | 3.12e-11 | 65.1 |
| MS.gene95401.t1 | AT1G18840 | 56.250 | 48 | 21 | 0 | 299 | 346 | 103 | 150 | 3.12e-11 | 65.1 |
| MS.gene95401.t1 | AT1G18840 | 56.250 | 48 | 21 | 0 | 299 | 346 | 103 | 150 | 3.12e-11 | 65.1 |
| MS.gene95401.t1 | AT1G51960 | 74.419 | 43 | 11 | 0 | 304 | 346 | 99 | 141 | 5.00e-11 | 63.5 |
Find 85 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCTTCTGCTTCAGATT+TGG | 0.197962 | 3.3:+47550075 | MS.gene95401:CDS |
| CTTACTATTCATTGTCCTTA+TGG | 0.199843 | 3.3:+47551057 | MS.gene95401:CDS |
| TCTGCTTCTGCTTCAGATTT+GGG | 0.223771 | 3.3:+47550076 | MS.gene95401:CDS |
| CTTCTTTGTTGCCACGTATC+AGG | 0.258751 | 3.3:+47549640 | MS.gene95401:CDS |
| CGATTTGAGCGTTGATTTGA+TGG | 0.261658 | 3.3:+47549847 | MS.gene95401:CDS |
| ATCGTCACAGTTGACTTCTT+TGG | 0.274583 | 3.3:+47549680 | MS.gene95401:CDS |
| TCGTCACAGTTGACTTCTTT+GGG | 0.280279 | 3.3:+47549681 | MS.gene95401:CDS |
| CCATAACAACTTGAAATATT+CGG | 0.305922 | 3.3:-47550224 | None:intergenic |
| TAGTGAGAGGTCACAATGTT+AGG | 0.313052 | 3.3:+47553020 | MS.gene95401:CDS |
| AAGAGCACTTCGTGCGCTTA+AGG | 0.319760 | 3.3:+47552976 | MS.gene95401:CDS |
| CACACAAATAATTTCCTCTC+TGG | 0.349139 | 3.3:-47549766 | None:intergenic |
| TCCCCACACCGGAAGATAAT+AGG | 0.350581 | 3.3:-47549707 | None:intergenic |
| CATAACAACTTGAAATATTC+GGG | 0.367897 | 3.3:-47550223 | None:intergenic |
| ATTGTTATTGTGATATTGTA+TGG | 0.381212 | 3.3:+47549951 | MS.gene95401:CDS |
| TTCTTTGTTGCCACGTATCA+GGG | 0.383511 | 3.3:+47549641 | MS.gene95401:CDS |
| CATCAAATCAACGCTCAAAT+CGG | 0.411551 | 3.3:-47549846 | None:intergenic |
| CCTTGAGCCACACTTGTAGC+AGG | 0.415099 | 3.3:-47552370 | None:intergenic |
| AGCCTATTATCTTCCGGTGT+GGG | 0.416349 | 3.3:+47549705 | MS.gene95401:CDS |
| CAGATTTGGGTTTCGCCAAT+GGG | 0.417079 | 3.3:+47550089 | MS.gene95401:CDS |
| TTGGGGAGCCTATTATCTTC+CGG | 0.425926 | 3.3:+47549699 | MS.gene95401:CDS |
| TGGGTGAAGTTGACAAATTT+AGG | 0.437264 | 3.3:+47550010 | MS.gene95401:CDS |
| ATCAAATCAACGCTCAAATC+GGG | 0.437271 | 3.3:-47549845 | None:intergenic |
| TTGATGGCCAAGCTTGTGTT+TGG | 0.441564 | 3.3:+47549863 | MS.gene95401:CDS |
| ACCGGTCAGACTGTGATGAT+TGG | 0.443674 | 3.3:+47549821 | MS.gene95401:CDS |
| GATTAACTTTGCATATTGCC+AGG | 0.455283 | 3.3:-47551559 | None:intergenic |
| AGGACGTGAGACACAACTTT+GGG | 0.461277 | 3.3:+47551524 | MS.gene95401:CDS |
| AGAGCACTTCGTGCGCTTAA+GGG | 0.465270 | 3.3:+47552977 | MS.gene95401:CDS |
| GTTGACAAATTTAGGTGATA+CGG | 0.466907 | 3.3:+47550018 | MS.gene95401:CDS |
| TCAGATTTGGGTTTCGCCAA+TGG | 0.480324 | 3.3:+47550088 | MS.gene95401:CDS |
| TAGTTCGACGTAAGACAGTC+TGG | 0.480829 | 3.3:-47549610 | None:intergenic |
| GTGTGGCTCAAGGACAGATC+AGG | 0.487530 | 3.3:+47552380 | MS.gene95401:CDS |
| CGTGGCAACAAAGAAGCTAT+AGG | 0.490086 | 3.3:-47549633 | None:intergenic |
| ATGGCCAAGCTTGTGTTTGG+TGG | 0.494277 | 3.3:+47549866 | MS.gene95401:CDS |
| CCTTGTGTTGTAGACAAAAC+CGG | 0.495691 | 3.3:+47549803 | MS.gene95401:CDS |
| GCCTTGATGAGAAGGAGAAA+AGG | 0.495907 | 3.3:+47549987 | MS.gene95401:CDS |
| ACATGCTCTTGCTGTGGCTA+TGG | 0.501053 | 3.3:+47552410 | MS.gene95401:CDS |
| CTAAGAGTTCAAATCATGCT+AGG | 0.504978 | 3.3:+47552490 | MS.gene95401:CDS |
| TCCAATCATCACAGTCTGAC+CGG | 0.509719 | 3.3:-47549822 | None:intergenic |
| GTCTTAATGCTAACCACTGT+GGG | 0.511109 | 3.3:+47550149 | MS.gene95401:CDS |
| TTTGGGTTCATGACACAACC+TGG | 0.518714 | 3.3:+47551541 | MS.gene95401:CDS |
| GAGGACGTGAGACACAACTT+TGG | 0.520011 | 3.3:+47551523 | MS.gene95401:CDS |
| TATTGAAAATGCAGGTCAAA+CGG | 0.526443 | 3.3:+47551011 | MS.gene95401:intron |
| ACACAAATAATTTCCTCTCT+GGG | 0.526886 | 3.3:-47549765 | None:intergenic |
| TGAGTTTGAGTTGTTGCTAG+TGG | 0.529174 | 3.3:+47549916 | MS.gene95401:CDS |
| TCCGGTGTGGGGACCATCGT+TGG | 0.532697 | 3.3:+47549717 | MS.gene95401:CDS |
| TTTCCCACCAAACACAAGCT+TGG | 0.533751 | 3.3:-47549870 | None:intergenic |
| AGCTACTGCTCAAGCTGCTG+TGG | 0.535167 | 3.3:+47552452 | MS.gene95401:CDS |
| AAACAGGGGCGAGGAAAAGA+AGG | 0.538229 | 3.3:+47551501 | MS.gene95401:intron |
| TAAGAGTGTTCGTTCATCTC+CGG | 0.538274 | 3.3:-47551038 | None:intergenic |
| TGGGAAAAGTAAAGTCTTGG+TGG | 0.542668 | 3.3:+47549886 | MS.gene95401:CDS |
| AAAGATTACAAAATTCCCAT+TGG | 0.543900 | 3.3:-47550104 | None:intergenic |
| GAGCACTTCGTGCGCTTAAG+GGG | 0.545080 | 3.3:+47552978 | MS.gene95401:CDS |
| GCCTATTATCTTCCGGTGTG+GGG | 0.553777 | 3.3:+47549706 | MS.gene95401:CDS |
| AGTACAAGTTGTGACTTCCA+CGG | 0.575282 | 3.3:+47550127 | MS.gene95401:CDS |
| TGGCCAAGCTTGTGTTTGGT+GGG | 0.577095 | 3.3:+47549867 | MS.gene95401:CDS |
| TGTGTTTAGCCTTGATGAGA+AGG | 0.577993 | 3.3:+47549979 | MS.gene95401:CDS |
| CTTGAGCCACACTTGTAGCA+GGG | 0.579836 | 3.3:-47552369 | None:intergenic |
| TAAGACAGTCTGGTGGATGT+AGG | 0.583658 | 3.3:-47549600 | None:intergenic |
| CTTTGTTGCCACGTATCAGG+GGG | 0.589389 | 3.3:+47549643 | MS.gene95401:CDS |
| AAGCTGCTGTGGAAGTTGCA+AGG | 0.590980 | 3.3:+47552463 | MS.gene95401:CDS |
| CGTCACAGTTGACTTCTTTG+GGG | 0.592862 | 3.3:+47549682 | MS.gene95401:CDS |
| TAAGAGTTCAAATCATGCTA+GGG | 0.594458 | 3.3:+47552491 | MS.gene95401:CDS |
| TGTCTCTTTAAACAGGGGCG+AGG | 0.596552 | 3.3:+47551492 | MS.gene95401:intron |
| AAGTTGCAAGCTTTAGTGAG+AGG | 0.597297 | 3.3:+47553007 | MS.gene95401:CDS |
| GAGCCTATTATCTTCCGGTG+TGG | 0.609628 | 3.3:+47549704 | MS.gene95401:CDS |
| TGGTGGGAAAAGTAAAGTCT+TGG | 0.615869 | 3.3:+47549883 | MS.gene95401:CDS |
| TTGATGAGAAGGAGAAAAGG+TGG | 0.618487 | 3.3:+47549990 | MS.gene95401:CDS |
| AGTAGCTCTTGCTGCCTCAG+CGG | 0.619477 | 3.3:-47552436 | None:intergenic |
| CCTGCTACAAGTGTGGCTCA+AGG | 0.619831 | 3.3:+47552370 | MS.gene95401:CDS |
| TGTGGCTATGGCTACCGCTG+AGG | 0.626091 | 3.3:+47552422 | MS.gene95401:CDS |
| AAAGGGCCCTGCTACAAGTG+TGG | 0.631464 | 3.3:+47552363 | MS.gene95401:intron |
| TCCAACGATGGTCCCCACAC+CGG | 0.631924 | 3.3:-47549718 | None:intergenic |
| TATTCGGGATAATCAGACAA+AGG | 0.641539 | 3.3:-47550208 | None:intergenic |
| TCTTTGTTGCCACGTATCAG+GGG | 0.643297 | 3.3:+47549642 | MS.gene95401:CDS |
| TGGGGACCATCGTTGGACGA+AGG | 0.651178 | 3.3:+47549724 | MS.gene95401:CDS |
| GGTCTTAATGCTAACCACTG+TGG | 0.654912 | 3.3:+47550148 | MS.gene95401:CDS |
| TAGCGACCTTCGTCCAACGA+TGG | 0.661422 | 3.3:-47549730 | None:intergenic |
| TGATGAGAAGGAGAAAAGGT+GGG | 0.662583 | 3.3:+47549991 | MS.gene95401:CDS |
| CAAATAATTTCCTCTCTGGG+AGG | 0.664103 | 3.3:-47549762 | None:intergenic |
| CAGGGGCGAGGAAAAGAAGG+AGG | 0.678557 | 3.3:+47551504 | MS.gene95401:intron |
| AGTGGTTAGCATTAAGACCG+TGG | 0.687338 | 3.3:-47550144 | None:intergenic |
| TGAGAAACATGCTCTTGCTG+TGG | 0.692861 | 3.3:+47552404 | MS.gene95401:CDS |
| TTCGACGTAAGACAGTCTGG+TGG | 0.704950 | 3.3:-47549607 | None:intergenic |
| AACATGTCAACCTCCCAGAG+AGG | 0.706137 | 3.3:+47549752 | MS.gene95401:CDS |
| TCAACTGTGACGATTACCTG+AGG | 0.730141 | 3.3:-47549671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAAAATATAATTT+AGG | - | chr3.3:47552229-47552248 | None:intergenic | 0.0% |
| !! | AAGTTAGAAAATTTAATACA+TGG | - | chr3.3:47552876-47552895 | None:intergenic | 15.0% |
| !! | AGTTAGAAAATTTAATACAT+GGG | - | chr3.3:47552875-47552894 | None:intergenic | 15.0% |
| !! | ATATGATAGAAAATCATATA+TGG | + | chr3.3:47551420-47551439 | MS.gene95401:intron | 15.0% |
| !! | TATATGAAAAAAGTAAATGA+AGG | - | chr3.3:47550508-47550527 | None:intergenic | 15.0% |
| !!! | AATTATTTGTGTGTTTTTAA+AGG | + | chr3.3:47549776-47549795 | MS.gene95401:CDS | 15.0% |
| !!! | ATTATTTGTGTGTTTTTAAA+GGG | + | chr3.3:47549777-47549796 | MS.gene95401:CDS | 15.0% |
| !!! | CAATATATCTTTTTTTTTAG+AGG | - | chr3.3:47551738-47551757 | None:intergenic | 15.0% |
| !! | AGAACATATTACTTATAAGT+AGG | + | chr3.3:47550615-47550634 | MS.gene95401:intron | 20.0% |
| !! | ATTCGTTCATTAGAATTTAT+AGG | + | chr3.3:47550724-47550743 | MS.gene95401:intron | 20.0% |
| !! | GAACATATTACTTATAAGTA+GGG | + | chr3.3:47550616-47550635 | MS.gene95401:intron | 20.0% |
| !! | GTTAGAAAATTTAATACATG+GGG | - | chr3.3:47552874-47552893 | None:intergenic | 20.0% |
| !! | TGATTTCAATTTATACAAGA+AGG | - | chr3.3:47550456-47550475 | None:intergenic | 20.0% |
| !!! | ATTGTTATTGTGATATTGTA+TGG | + | chr3.3:47549951-47549970 | MS.gene95401:CDS | 20.0% |
| !!! | ATTGTTTTTTTTTGTTCGAT+TGG | + | chr3.3:47550338-47550357 | MS.gene95401:intron | 20.0% |
| !!! | CAAAGGTTTTAAAAGAATTA+AGG | + | chr3.3:47550821-47550840 | MS.gene95401:intron | 20.0% |
| !!! | CTTAATTCTTTTAAAACCTT+TGG | - | chr3.3:47550823-47550842 | None:intergenic | 20.0% |
| !!! | GTTTTAAAAGAATTAAGGTA+GGG | + | chr3.3:47550826-47550845 | MS.gene95401:intron | 20.0% |
| ! | AAACAAAATACCAAGTCTTA+TGG | - | chr3.3:47551644-47551663 | None:intergenic | 25.0% |
| ! | AAAGATTACAAAATTCCCAT+TGG | - | chr3.3:47550107-47550126 | None:intergenic | 25.0% |
| ! | AACAAATCTAATTGCATGTT+TGG | + | chr3.3:47552573-47552592 | MS.gene95401:intron | 25.0% |
| ! | ACTACAATTTATGCAACTTA+TGG | - | chr3.3:47550912-47550931 | None:intergenic | 25.0% |
| ! | AGATATACAAGGAAAATGAA+TGG | + | chr3.3:47551271-47551290 | MS.gene95401:intron | 25.0% |
| ! | CATAACAACTTGAAATATTC+GGG | - | chr3.3:47550226-47550245 | None:intergenic | 25.0% |
| ! | CATTTATAACGAGATATACA+AGG | + | chr3.3:47551260-47551279 | MS.gene95401:intron | 25.0% |
| ! | CCATAACAACTTGAAATATT+CGG | - | chr3.3:47550227-47550246 | None:intergenic | 25.0% |
| ! | CTACAATTTATGCAACTTAT+GGG | - | chr3.3:47550911-47550930 | None:intergenic | 25.0% |
| ! | CTTGTATATCTCGTTATAAA+TGG | - | chr3.3:47551262-47551281 | None:intergenic | 25.0% |
| ! | TATATATTTCCCATAAGACT+TGG | + | chr3.3:47551631-47551650 | MS.gene95401:intron | 25.0% |
| ! | TCTATATCAAGTATACAACA+AGG | - | chr3.3:47550978-47550997 | None:intergenic | 25.0% |
| ! | TCTATCATATATCATGTCAA+GGG | - | chr3.3:47551410-47551429 | None:intergenic | 25.0% |
| ! | TGTAGAAGAAAGAAAAAAGA+AGG | + | chr3.3:47552248-47552267 | MS.gene95401:intron | 25.0% |
| ! | TTCTATCATATATCATGTCA+AGG | - | chr3.3:47551411-47551430 | None:intergenic | 25.0% |
| !! | AAACTTTTGTCTCTTTAAAC+AGG | + | chr3.3:47551485-47551504 | MS.gene95401:intron | 25.0% |
| !! | AACAAAATACCAAGTCTTAT+GGG | - | chr3.3:47551643-47551662 | None:intergenic | 25.0% |
| !! | AACTTTTGTCTCTTTAAACA+GGG | + | chr3.3:47551486-47551505 | MS.gene95401:intron | 25.0% |
| !! | AAGTCTTATGGGAAATATAT+AGG | - | chr3.3:47551632-47551651 | None:intergenic | 25.0% |
| !! | AGTTTAATGATTTTCCCTTT+TGG | - | chr3.3:47550871-47550890 | None:intergenic | 25.0% |
| !! | CTGTTTTGTAGCAATTAATA+AGG | - | chr3.3:47552049-47552068 | None:intergenic | 25.0% |
| !!! | AAAAAAGAAGGTGGATTTTT+AGG | + | chr3.3:47552260-47552279 | MS.gene95401:intron | 25.0% |
| !!! | AAATTACCTTTTTTCTCTCT+TGG | + | chr3.3:47552926-47552945 | MS.gene95401:intron | 25.0% |
| !!! | AACTTCTTTTAGAGGTTATT+TGG | + | chr3.3:47552539-47552558 | MS.gene95401:CDS | 25.0% |
| !!! | ATTAGAGGCTTTAATTTTGA+GGG | + | chr3.3:47550772-47550791 | MS.gene95401:intron | 25.0% |
| !!! | GCAAATTGTATTTTGATTAG+AGG | + | chr3.3:47550757-47550776 | MS.gene95401:intron | 25.0% |
| !!! | GGTTTTAAAAGAATTAAGGT+AGG | + | chr3.3:47550825-47550844 | MS.gene95401:intron | 25.0% |
| !!! | TTTTTGGTATGTTGAATCTA+AGG | - | chr3.3:47551854-47551873 | None:intergenic | 25.0% |
| AAAAAACCTCAACTATTGGT+TGG | - | chr3.3:47551185-47551204 | None:intergenic | 30.0% | |
| ACAAATTGTCAAACAAAGTG+TGG | + | chr3.3:47551963-47551982 | MS.gene95401:intron | 30.0% | |
| ACACAAATAATTTCCTCTCT+GGG | - | chr3.3:47549768-47549787 | None:intergenic | 30.0% | |
| AGAAGAAAGAAAAAAGAAGG+TGG | + | chr3.3:47552251-47552270 | MS.gene95401:intron | 30.0% | |
| ATATAGAGAGTAGGTAACAA+TGG | + | chr3.3:47551127-47551146 | MS.gene95401:intron | 30.0% | |
| ATTCAACATACCAAAAACCA+TGG | + | chr3.3:47551857-47551876 | MS.gene95401:intron | 30.0% | |
| ATTTGGCAAATACTACACTT+TGG | + | chr3.3:47552793-47552812 | MS.gene95401:intron | 30.0% | |
| CGTTCATTAGAATTTATAGG+AGG | + | chr3.3:47550727-47550746 | MS.gene95401:intron | 30.0% | |
| CTTACTATTCATTGTCCTTA+TGG | + | chr3.3:47551057-47551076 | MS.gene95401:CDS | 30.0% | |
| CTTGTCAAATTCTAACCAAA+GGG | + | chr3.3:47552102-47552121 | MS.gene95401:intron | 30.0% | |
| CTTTATGTTTGACAATATCG+TGG | + | chr3.3:47552666-47552685 | MS.gene95401:intron | 30.0% | |
| GAGTAAAAAACCTCAACTAT+TGG | - | chr3.3:47551189-47551208 | None:intergenic | 30.0% | |
| GGAAAATGAATGGTAGAATA+TGG | + | chr3.3:47551281-47551300 | MS.gene95401:intron | 30.0% | |
| GTTAAGTGAATATAGAGAGT+AGG | + | chr3.3:47551118-47551137 | MS.gene95401:intron | 30.0% | |
| GTTGACAAATTTAGGTGATA+CGG | + | chr3.3:47550018-47550037 | MS.gene95401:CDS | 30.0% | |
| TAAGAGTTCAAATCATGCTA+GGG | + | chr3.3:47552491-47552510 | MS.gene95401:CDS | 30.0% | |
| TACCATTGAGTCAGATATTT+AGG | - | chr3.3:47552129-47552148 | None:intergenic | 30.0% | |
| TATGGTATTTCGCTACATAA+TGG | + | chr3.3:47551075-47551094 | MS.gene95401:intron | 30.0% | |
| TATTGAAAATGCAGGTCAAA+CGG | + | chr3.3:47551011-47551030 | MS.gene95401:intron | 30.0% | |
| TCTTGTCAAATTCTAACCAA+AGG | + | chr3.3:47552101-47552120 | MS.gene95401:intron | 30.0% | |
| TGGTTAGAATTTGACAAGAA+AGG | - | chr3.3:47552100-47552119 | None:intergenic | 30.0% | |
| TTAGGACCCTTTCTTATTAA+TGG | - | chr3.3:47552211-47552230 | None:intergenic | 30.0% | |
| TTATGTAGCGAAATACCATA+AGG | - | chr3.3:47551075-47551094 | None:intergenic | 30.0% | |
| TTCGGAAAGATTAACAAAAG+AGG | + | chr3.3:47550696-47550715 | MS.gene95401:intron | 30.0% | |
| TTTGTGATTCCAAATGGAAA+GGG | - | chr3.3:47552002-47552021 | None:intergenic | 30.0% | |
| ! | AATAAGGAACGTTTTGTCAA+GGG | - | chr3.3:47552033-47552052 | None:intergenic | 30.0% |
| ! | ACTTTTGTCTCTTTAAACAG+GGG | + | chr3.3:47551487-47551506 | MS.gene95401:intron | 30.0% |
| ! | AGTGTTTTTCATTTGGATCA+AGG | + | chr3.3:47550175-47550194 | MS.gene95401:CDS | 30.0% |
| ! | GTAACAATGGTATTGTTTCT+TGG | + | chr3.3:47551140-47551159 | MS.gene95401:intron | 30.0% |
| ! | GTGATTCAAACTTCTTTTAG+AGG | + | chr3.3:47552531-47552550 | MS.gene95401:CDS | 30.0% |
| ! | TAATAAGGAACGTTTTGTCA+AGG | - | chr3.3:47552034-47552053 | None:intergenic | 30.0% |
| ! | TGTTGCTTAATAAGCCAAAA+GGG | + | chr3.3:47550854-47550873 | MS.gene95401:intron | 30.0% |
| ! | TTGTTGCTTAATAAGCCAAA+AGG | + | chr3.3:47550853-47550872 | MS.gene95401:intron | 30.0% |
| ! | TTTTACACTGTCTTATCGTT+AGG | - | chr3.3:47551599-47551618 | None:intergenic | 30.0% |
| ! | TTTTGTGATTCCAAATGGAA+AGG | - | chr3.3:47552003-47552022 | None:intergenic | 30.0% |
| !! | ATTTGTGTGTTTTTAAAGGG+CGG | + | chr3.3:47549780-47549799 | MS.gene95401:CDS | 30.0% |
| !! | CATTCTAGTTTACTTACTCA+TGG | + | chr3.3:47550942-47550961 | MS.gene95401:intron | 30.0% |
| !! | CCGAATATTTCAAGTTGTTA+TGG | + | chr3.3:47550224-47550243 | MS.gene95401:intron | 30.0% |
| !! | GATTAGAGGCTTTAATTTTG+AGG | + | chr3.3:47550771-47550790 | MS.gene95401:intron | 30.0% |
| AACAAAGTTGAAGCATGATG+TGG | + | chr3.3:47552330-47552349 | MS.gene95401:intron | 35.0% | |
| AATGCAAAGGACTATAGTCT+AGG | + | chr3.3:47550664-47550683 | MS.gene95401:intron | 35.0% | |
| AATTGACCAACCAATAGTTG+AGG | + | chr3.3:47551176-47551195 | MS.gene95401:intron | 35.0% | |
| ACATCATGCTTCAACTTTGT+TGG | - | chr3.3:47552331-47552350 | None:intergenic | 35.0% | |
| AGCAGAAGCAGAAAAACAAA+AGG | - | chr3.3:47550068-47550087 | None:intergenic | 35.0% | |
| AGCTTTGCAACTAGTACTTA+TGG | + | chr3.3:47550364-47550383 | MS.gene95401:intron | 35.0% | |
| AGTCATGCTATTGAAAATGC+AGG | + | chr3.3:47551003-47551022 | MS.gene95401:intron | 35.0% | |
| ATCAAATCAACGCTCAAATC+GGG | - | chr3.3:47549848-47549867 | None:intergenic | 35.0% | |
| ATGAATGGTAGAATATGGCA+TGG | + | chr3.3:47551286-47551305 | MS.gene95401:intron | 35.0% | |
| CAATGGTAAACTGTGTATCT+TGG | + | chr3.3:47552141-47552160 | MS.gene95401:intron | 35.0% | |
| CACAATGTTTAACCGTGATT+TGG | + | chr3.3:47552776-47552795 | MS.gene95401:intron | 35.0% | |
| CACACAAATAATTTCCTCTC+TGG | - | chr3.3:47549769-47549788 | None:intergenic | 35.0% | |
| CACTGAATTTGACGAAATCA+CGG | - | chr3.3:47552843-47552862 | None:intergenic | 35.0% | |
| CAGCATGAGATTTAATGCAA+AGG | + | chr3.3:47550651-47550670 | MS.gene95401:intron | 35.0% | |
| CATCAAATCAACGCTCAAAT+CGG | - | chr3.3:47549849-47549868 | None:intergenic | 35.0% | |
| CGTGAGCCATTAATAAGAAA+GGG | + | chr3.3:47552202-47552221 | MS.gene95401:intron | 35.0% | |
| CTAAGAGTTCAAATCATGCT+AGG | + | chr3.3:47552490-47552509 | MS.gene95401:CDS | 35.0% | |
| GATTAACTTTGCATATTGCC+AGG | - | chr3.3:47551562-47551581 | None:intergenic | 35.0% | |
| GTCCTAAATATCTGACTCAA+TGG | + | chr3.3:47552124-47552143 | MS.gene95401:intron | 35.0% | |
| GTGTAGTATTTGCCAAATCA+CGG | - | chr3.3:47552791-47552810 | None:intergenic | 35.0% | |
| TATTCGGGATAATCAGACAA+AGG | - | chr3.3:47550211-47550230 | None:intergenic | 35.0% | |
| TCCAAAATCATTGTGGCAAT+TGG | - | chr3.3:47552734-47552753 | None:intergenic | 35.0% | |
| TCGTGAGCCATTAATAAGAA+AGG | + | chr3.3:47552201-47552220 | MS.gene95401:intron | 35.0% | |
| TGGGTGAAGTTGACAAATTT+AGG | + | chr3.3:47550010-47550029 | MS.gene95401:CDS | 35.0% | |
| TTCACTGTTTCATGATTCAC+TGG | - | chr3.3:47552289-47552308 | None:intergenic | 35.0% | |
| TTTGACAAGAAAGGTTCGTA+TGG | - | chr3.3:47552091-47552110 | None:intergenic | 35.0% | |
| ! | AAAACAGCTGGTTCTTATGT+TGG | + | chr3.3:47551896-47551915 | MS.gene95401:intron | 35.0% |
| ! | CGATGTTTTGTGATTCCAAA+TGG | - | chr3.3:47552008-47552027 | None:intergenic | 35.0% |
| ! | TGGGATGAGTGTTTTTCATT+TGG | + | chr3.3:47550168-47550187 | MS.gene95401:CDS | 35.0% |
| !! | CTTTAATTTTGAGGGAAGGT+TGG | + | chr3.3:47550780-47550799 | MS.gene95401:intron | 35.0% |
| ACTACTTCGTGCAATCACTT+TGG | - | chr3.3:47551799-47551818 | None:intergenic | 40.0% | |
| AGGTTCGTATGGTGTACATT+TGG | - | chr3.3:47552080-47552099 | None:intergenic | 40.0% | |
| AGTACAAGTTGTGACTTCCA+CGG | + | chr3.3:47550127-47550146 | MS.gene95401:CDS | 40.0% | |
| CAAATAATTTCCTCTCTGGG+AGG | - | chr3.3:47549765-47549784 | None:intergenic | 40.0% | |
| CACACACCAAGAGAGAAAAA+AGG | - | chr3.3:47552935-47552954 | None:intergenic | 40.0% | |
| CCACTGATCCAAAATCATTG+TGG | - | chr3.3:47552741-47552760 | None:intergenic | 40.0% | |
| CCTTGTGTTGTAGACAAAAC+CGG | + | chr3.3:47549803-47549822 | MS.gene95401:CDS | 40.0% | |
| GATGTGGTTACTGCTACAAA+GGG | + | chr3.3:47552346-47552365 | MS.gene95401:intron | 40.0% | |
| GGTATTTCGCTACATAATGG+TGG | + | chr3.3:47551078-47551097 | MS.gene95401:intron | 40.0% | |
| GTATGTTCTCTTGCATCGAA+AGG | + | chr3.3:47550287-47550306 | MS.gene95401:intron | 40.0% | |
| GTCTTAATGCTAACCACTGT+GGG | + | chr3.3:47550149-47550168 | MS.gene95401:CDS | 40.0% | |
| GTTTGACAATATCGTGGTGT+GGG | + | chr3.3:47552672-47552691 | MS.gene95401:intron | 40.0% | |
| TAGTCTAGGTCTTCGACATT+CGG | + | chr3.3:47550678-47550697 | MS.gene95401:intron | 40.0% | |
| TAGTGAGAGGTCACAATGTT+AGG | + | chr3.3:47553020-47553039 | MS.gene95401:CDS | 40.0% | |
| TCACTGAGCTGCATTCATAA+CGG | + | chr3.3:47550263-47550282 | MS.gene95401:intron | 40.0% | |
| TCTGCTTCTGCTTCAGATTT+GGG | + | chr3.3:47550076-47550095 | MS.gene95401:CDS | 40.0% | |
| TGATGAGAAGGAGAAAAGGT+GGG | + | chr3.3:47549991-47550010 | MS.gene95401:CDS | 40.0% | |
| TGATGTGGTTACTGCTACAA+AGG | + | chr3.3:47552345-47552364 | MS.gene95401:intron | 40.0% | |
| TGGGAAAAGTAAAGTCTTGG+TGG | + | chr3.3:47549886-47549905 | MS.gene95401:CDS | 40.0% | |
| TGGTGGGAAAAGTAAAGTCT+TGG | + | chr3.3:47549883-47549902 | MS.gene95401:CDS | 40.0% | |
| TGTTTGACAATATCGTGGTG+TGG | + | chr3.3:47552671-47552690 | MS.gene95401:intron | 40.0% | |
| TTCTGCTTCTGCTTCAGATT+TGG | + | chr3.3:47550075-47550094 | MS.gene95401:CDS | 40.0% | |
| TTCTTTGTTGCCACGTATCA+GGG | + | chr3.3:47549641-47549660 | MS.gene95401:CDS | 40.0% | |
| TTGATGAGAAGGAGAAAAGG+TGG | + | chr3.3:47549990-47550009 | MS.gene95401:CDS | 40.0% | |
| ! | AAGTTGCAAGCTTTAGTGAG+AGG | + | chr3.3:47553007-47553026 | MS.gene95401:CDS | 40.0% |
| ! | ACCTTTTCTCCTTCTCATCA+AGG | - | chr3.3:47549991-47550010 | None:intergenic | 40.0% |
| ! | ATCGTCACAGTTGACTTCTT+TGG | + | chr3.3:47549680-47549699 | MS.gene95401:CDS | 40.0% |
| ! | CCACAATGATTTTGGATCAG+TGG | + | chr3.3:47552738-47552757 | MS.gene95401:intron | 40.0% |
| ! | GCCAATTGCCACAATGATTT+TGG | + | chr3.3:47552730-47552749 | MS.gene95401:intron | 40.0% |
| ! | GTCAGATATTTAGGACCCTT+TGG | - | chr3.3:47552120-47552139 | None:intergenic | 40.0% |
| ! | TCGTCACAGTTGACTTCTTT+GGG | + | chr3.3:47549681-47549700 | MS.gene95401:CDS | 40.0% |
| ! | TTTTGGATCAGTGGCGTATT+TGG | + | chr3.3:47552747-47552766 | MS.gene95401:intron | 40.0% |
| !! | CGATTTGAGCGTTGATTTGA+TGG | + | chr3.3:47549847-47549866 | MS.gene95401:CDS | 40.0% |
| !! | GAGGCTTTAATTTTGAGGGA+AGG | + | chr3.3:47550776-47550795 | MS.gene95401:intron | 40.0% |
| !! | TAAGAGTGTTCGTTCATCTC+CGG | - | chr3.3:47551041-47551060 | None:intergenic | 40.0% |
| !! | TGAGTTTGAGTTGTTGCTAG+TGG | + | chr3.3:47549916-47549935 | MS.gene95401:CDS | 40.0% |
| !! | TGTGTTTAGCCTTGATGAGA+AGG | + | chr3.3:47549979-47549998 | MS.gene95401:CDS | 40.0% |
| !!! | AGGTGATACGGTTTTGTTCT+TGG | + | chr3.3:47550030-47550049 | MS.gene95401:CDS | 40.0% |
| AAATGGAAAGGGAGTGGTGA+CGG | - | chr3.3:47551991-47552010 | None:intergenic | 45.0% | |
| AAGTGCTCTTCTTGCCTACA+AGG | - | chr3.3:47552966-47552985 | None:intergenic | 45.0% | |
| AGCCTATTATCTTCCGGTGT+GGG | + | chr3.3:47549705-47549724 | MS.gene95401:CDS | 45.0% | |
| AGGACGTGAGACACAACTTT+GGG | + | chr3.3:47551524-47551543 | MS.gene95401:CDS | 45.0% | |
| AGTGGTTAGCATTAAGACCG+TGG | - | chr3.3:47550147-47550166 | None:intergenic | 45.0% | |
| ATGGCAGTACTCAAAACAGC+TGG | + | chr3.3:47551884-47551903 | MS.gene95401:intron | 45.0% | |
| CGTGGCAACAAAGAAGCTAT+AGG | - | chr3.3:47549636-47549655 | None:intergenic | 45.0% | |
| CGTGTCTGAACTGCATTGTT+AGG | + | chr3.3:47551826-47551845 | MS.gene95401:intron | 45.0% | |
| CTTCTTTGTTGCCACGTATC+AGG | + | chr3.3:47549640-47549659 | MS.gene95401:CDS | 45.0% | |
| GAAAAACACTCATCCCACAG+TGG | - | chr3.3:47550165-47550184 | None:intergenic | 45.0% | |
| GATTCCAAATGGAAAGGGAG+TGG | - | chr3.3:47551997-47552016 | None:intergenic | 45.0% | |
| GCCTTGATGAGAAGGAGAAA+AGG | + | chr3.3:47549987-47550006 | MS.gene95401:CDS | 45.0% | |
| GGTCTTAATGCTAACCACTG+TGG | + | chr3.3:47550148-47550167 | MS.gene95401:CDS | 45.0% | |
| TACCAAAAACCATGGCAGCA+TGG | + | chr3.3:47551865-47551884 | MS.gene95401:intron | 45.0% | |
| TAGTTCGACGTAAGACAGTC+TGG | - | chr3.3:47549613-47549632 | None:intergenic | 45.0% | |
| TCAACTGTGACGATTACCTG+AGG | - | chr3.3:47549674-47549693 | None:intergenic | 45.0% | |
| TCAGTCATTGCTATGCAGCA+AGG | + | chr3.3:47552171-47552190 | MS.gene95401:intron | 45.0% | |
| TCCAATCATCACAGTCTGAC+CGG | - | chr3.3:47549825-47549844 | None:intergenic | 45.0% | |
| TCTTTGTTGCCACGTATCAG+GGG | + | chr3.3:47549642-47549661 | MS.gene95401:CDS | 45.0% | |
| TGAGAAACATGCTCTTGCTG+TGG | + | chr3.3:47552404-47552423 | MS.gene95401:CDS | 45.0% | |
| TGTGTGTGTGTGAACCTTGT+AGG | + | chr3.3:47552949-47552968 | MS.gene95401:intron | 45.0% | |
| TTGACGAAATCACGGTGACA+CGG | - | chr3.3:47552835-47552854 | None:intergenic | 45.0% | |
| TTGGGGAGCCTATTATCTTC+CGG | + | chr3.3:47549699-47549718 | MS.gene95401:CDS | 45.0% | |
| TTTCCCACCAAACACAAGCT+TGG | - | chr3.3:47549873-47549892 | None:intergenic | 45.0% | |
| ! | ATGCAGGTCAAACGGTTTTC+CGG | + | chr3.3:47551019-47551038 | MS.gene95401:intron | 45.0% |
| ! | CAGATTTGGGTTTCGCCAAT+GGG | + | chr3.3:47550089-47550108 | MS.gene95401:CDS | 45.0% |
| ! | CGTCACAGTTGACTTCTTTG+GGG | + | chr3.3:47549682-47549701 | MS.gene95401:CDS | 45.0% |
| ! | TAAGACAGTCTGGTGGATGT+AGG | - | chr3.3:47549603-47549622 | None:intergenic | 45.0% |
| ! | TCAGATTTGGGTTTCGCCAA+TGG | + | chr3.3:47550088-47550107 | MS.gene95401:CDS | 45.0% |
| ! | TTGATGGCCAAGCTTGTGTT+TGG | + | chr3.3:47549863-47549882 | MS.gene95401:CDS | 45.0% |
| ! | TTTGGGTTCATGACACAACC+TGG | + | chr3.3:47551541-47551560 | MS.gene95401:CDS | 45.0% |
| !! | CCGGTTTTGTCTACAACACA+AGG | - | chr3.3:47549806-47549825 | None:intergenic | 45.0% |
| !! | GTTTTGTTCTTGGCGTGTCA+AGG | + | chr3.3:47550040-47550059 | MS.gene95401:CDS | 45.0% |
| AAACAGGGGCGAGGAAAAGA+AGG | + | chr3.3:47551501-47551520 | MS.gene95401:intron | 50.0% | |
| AACATGTCAACCTCCCAGAG+AGG | + | chr3.3:47549752-47549771 | MS.gene95401:CDS | 50.0% | |
| AAGCTGCTGTGGAAGTTGCA+AGG | + | chr3.3:47552463-47552482 | MS.gene95401:CDS | 50.0% | |
| ACCGGTCAGACTGTGATGAT+TGG | + | chr3.3:47549821-47549840 | MS.gene95401:CDS | 50.0% | |
| ATGGCCAAGCTTGTGTTTGG+TGG | + | chr3.3:47549866-47549885 | MS.gene95401:CDS | 50.0% | |
| CTTGAGCCACACTTGTAGCA+GGG | - | chr3.3:47552372-47552391 | None:intergenic | 50.0% | |
| CTTTGTTGCCACGTATCAGG+GGG | + | chr3.3:47549643-47549662 | MS.gene95401:CDS | 50.0% | |
| GAGCCTATTATCTTCCGGTG+TGG | + | chr3.3:47549704-47549723 | MS.gene95401:CDS | 50.0% | |
| GAGGACGTGAGACACAACTT+TGG | + | chr3.3:47551523-47551542 | MS.gene95401:CDS | 50.0% | |
| GCCTATTATCTTCCGGTGTG+GGG | + | chr3.3:47549706-47549725 | MS.gene95401:CDS | 50.0% | |
| GTCACCACTCCCTTTCCATT+TGG | + | chr3.3:47551990-47552009 | MS.gene95401:intron | 50.0% | |
| GTCTGCGGTAGTTGATCCAA+AGG | + | chr3.3:47550804-47550823 | MS.gene95401:intron | 50.0% | |
| TCCCCACACCGGAAGATAAT+AGG | - | chr3.3:47549710-47549729 | None:intergenic | 50.0% | |
| TGGCCAAGCTTGTGTTTGGT+GGG | + | chr3.3:47549867-47549886 | MS.gene95401:CDS | 50.0% | |
| TGTCTCTTTAAACAGGGGCG+AGG | + | chr3.3:47551492-47551511 | MS.gene95401:intron | 50.0% | |
| TTCGACGTAAGACAGTCTGG+TGG | - | chr3.3:47549610-47549629 | None:intergenic | 50.0% | |
| ! | ACATGCTCTTGCTGTGGCTA+TGG | + | chr3.3:47552410-47552429 | MS.gene95401:CDS | 50.0% |
| ! | AGAGCACTTCGTGCGCTTAA+GGG | + | chr3.3:47552977-47552996 | MS.gene95401:CDS | 50.0% |
| ! | TGCCATGCTGCCATGGTTTT+TGG | - | chr3.3:47551870-47551889 | None:intergenic | 50.0% |
| !! | AAGAGCACTTCGTGCGCTTA+AGG | + | chr3.3:47552976-47552995 | MS.gene95401:CDS | 50.0% |
| AAAGGGCCCTGCTACAAGTG+TGG | + | chr3.3:47552363-47552382 | MS.gene95401:intron | 55.0% | |
| AGCTACTGCTCAAGCTGCTG+TGG | + | chr3.3:47552452-47552471 | MS.gene95401:CDS | 55.0% | |
| AGCTCAGTGATCCACTCTGG+AGG | - | chr3.3:47550253-47550272 | None:intergenic | 55.0% | |
| AGGTTGTTCCCCCTGATACG+TGG | - | chr3.3:47549654-47549673 | None:intergenic | 55.0% | |
| AGTAGCTCTTGCTGCCTCAG+CGG | - | chr3.3:47552439-47552458 | None:intergenic | 55.0% | |
| CCTGCTACAAGTGTGGCTCA+AGG | + | chr3.3:47552370-47552389 | MS.gene95401:CDS | 55.0% | |
| CCTTGAGCCACACTTGTAGC+AGG | - | chr3.3:47552373-47552392 | None:intergenic | 55.0% | |
| GAGCACTTCGTGCGCTTAAG+GGG | + | chr3.3:47552978-47552997 | MS.gene95401:CDS | 55.0% | |
| GTATCAGGGGGAACAACCTC+AGG | + | chr3.3:47549655-47549674 | MS.gene95401:CDS | 55.0% | |
| GTGTGGCTCAAGGACAGATC+AGG | + | chr3.3:47552380-47552399 | MS.gene95401:CDS | 55.0% | |
| TAGCGACCTTCGTCCAACGA+TGG | - | chr3.3:47549733-47549752 | None:intergenic | 55.0% | |
| TGAGGGAAGGTTGGAGTCTG+CGG | + | chr3.3:47550789-47550808 | MS.gene95401:intron | 55.0% | |
| TGCAGCTCAGTGATCCACTC+TGG | - | chr3.3:47550256-47550275 | None:intergenic | 55.0% | |
| TGTTATGGCCACCTCCAGAG+TGG | + | chr3.3:47550239-47550258 | MS.gene95401:intron | 55.0% | |
| ! | TCAGTGATCCACTCTGGAGG+TGG | - | chr3.3:47550250-47550269 | None:intergenic | 55.0% |
| ! | TGAGTACTGCCATGCTGCCA+TGG | - | chr3.3:47551877-47551896 | None:intergenic | 55.0% |
| CAGGGGCGAGGAAAAGAAGG+AGG | + | chr3.3:47551504-47551523 | MS.gene95401:intron | 60.0% | |
| TCCAACGATGGTCCCCACAC+CGG | - | chr3.3:47549721-47549740 | None:intergenic | 60.0% | |
| TGGGGACCATCGTTGGACGA+AGG | + | chr3.3:47549724-47549743 | MS.gene95401:CDS | 60.0% | |
| TGTGGCTATGGCTACCGCTG+AGG | + | chr3.3:47552422-47552441 | MS.gene95401:CDS | 60.0% | |
| TCCGGTGTGGGGACCATCGT+TGG | + | chr3.3:47549717-47549736 | MS.gene95401:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 47549596 | 47553072 | 47549596 | ID=MS.gene95401 |
| chr3.3 | mRNA | 47549596 | 47553072 | 47549596 | ID=MS.gene95401.t1;Parent=MS.gene95401 |
| chr3.3 | exon | 47549596 | 47550236 | 47549596 | ID=MS.gene95401.t1.exon1;Parent=MS.gene95401.t1 |
| chr3.3 | CDS | 47549596 | 47550236 | 47549596 | ID=cds.MS.gene95401.t1;Parent=MS.gene95401.t1 |
| chr3.3 | exon | 47551025 | 47551078 | 47551025 | ID=MS.gene95401.t1.exon2;Parent=MS.gene95401.t1 |
| chr3.3 | CDS | 47551025 | 47551078 | 47551025 | ID=cds.MS.gene95401.t1;Parent=MS.gene95401.t1 |
| chr3.3 | exon | 47551507 | 47551574 | 47551507 | ID=MS.gene95401.t1.exon3;Parent=MS.gene95401.t1 |
| chr3.3 | CDS | 47551507 | 47551574 | 47551507 | ID=cds.MS.gene95401.t1;Parent=MS.gene95401.t1 |
| chr3.3 | exon | 47552367 | 47552560 | 47552367 | ID=MS.gene95401.t1.exon4;Parent=MS.gene95401.t1 |
| chr3.3 | CDS | 47552367 | 47552560 | 47552367 | ID=cds.MS.gene95401.t1;Parent=MS.gene95401.t1 |
| chr3.3 | exon | 47552971 | 47553072 | 47552971 | ID=MS.gene95401.t1.exon5;Parent=MS.gene95401.t1 |
| chr3.3 | CDS | 47552971 | 47553072 | 47552971 | ID=cds.MS.gene95401.t1;Parent=MS.gene95401.t1 |
| Gene Sequence |
| Protein sequence |
