AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene95543

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95543.t1 MTR_4g047610 97.093 344 9 1 1 344 1 343 0.0 702
MS.gene95543.t1 MTR_5g022560 89.826 344 35 0 1 344 1 344 0.0 659
MS.gene95543.t1 MTR_4g079770 88.728 346 36 3 1 344 1 345 0.0 639
MS.gene95543.t1 MTR_4g107930 86.667 345 45 1 1 344 1 345 0.0 632
MS.gene95543.t1 MTR_4g079470 89.231 325 33 2 21 344 22 345 0.0 608
MS.gene95543.t1 MTR_4g079800 86.462 325 42 2 21 344 22 345 0.0 591
MS.gene95543.t1 MTR_2g075830 74.419 344 85 2 1 344 1 341 0.0 526
MS.gene95543.t1 MTR_4g080700 64.506 324 103 6 25 344 25 340 1.74e-153 434
MS.gene95543.t1 MTR_4g080730 62.069 348 120 6 1 344 1 340 2.84e-153 434
MS.gene95543.t1 MTR_2g083930 54.142 338 140 5 12 342 13 342 5.63e-133 383
MS.gene95543.t1 MTR_4g080360 52.464 345 157 5 2 344 3 342 1.36e-131 379
MS.gene95543.t1 MTR_4g104370 55.102 343 141 9 7 342 6 342 6.07e-127 368
MS.gene95543.t1 MTR_3g075390 53.079 341 144 7 14 342 7 343 4.42e-125 363
MS.gene95543.t1 MTR_4g079440 55.484 310 132 3 33 342 40 343 1.87e-122 356
MS.gene95543.t1 MTR_7g078600 57.097 310 122 6 34 342 37 336 4.23e-121 352
MS.gene95543.t1 MTR_3g116080 53.216 342 143 9 11 343 14 347 1.59e-119 349
MS.gene95543.t1 MTR_7g079230 51.462 342 158 5 1 342 1 334 1.12e-118 346
MS.gene95543.t1 MTR_2g090890 50.588 340 154 6 10 343 5 336 2.06e-118 345
MS.gene95543.t1 MTR_1g107550 53.628 317 136 6 32 342 43 354 1.85e-116 345
MS.gene95543.t1 MTR_4g094918 47.522 343 164 6 10 343 6 341 1.18e-114 337
MS.gene95543.t1 MTR_3g102220 50.459 327 144 7 27 342 41 360 3.07e-111 332
MS.gene95543.t1 MTR_1g018840 49.148 352 150 8 8 342 21 360 1.99e-110 329
MS.gene95543.t1 MTR_1g018840 49.148 352 150 8 8 342 21 360 2.44e-110 330
MS.gene95543.t1 MTR_3g112430 50.804 311 140 5 40 343 37 341 3.45e-104 313
MS.gene95543.t1 MTR_2g015850 53.103 290 129 5 55 342 78 362 4.54e-97 292
MS.gene95543.t1 MTR_2g016180 44.638 345 172 9 11 343 18 355 4.49e-91 281
MS.gene95543.t1 MTR_2g016270 44.737 342 161 9 11 343 18 340 6.34e-89 275
MS.gene95543.t1 MTR_2g067900 46.688 317 148 12 38 341 15 323 1.51e-78 243
MS.gene95543.t1 MTR_2g064475 40.857 350 150 16 38 343 15 351 2.80e-73 231
MS.gene95543.t1 MTR_2g067560 45.171 321 145 14 38 338 15 324 1.89e-72 241
MS.gene95543.t1 MTR_4g065077 39.815 324 172 9 32 343 44 356 2.04e-72 229
MS.gene95543.t1 MTR_7g078630 47.387 287 109 7 28 303 695 950 7.90e-72 240
MS.gene95543.t1 MTR_2g015920 40.810 321 171 10 33 343 47 358 9.86e-72 228
MS.gene95543.t1 MTR_4g125300 42.718 309 158 11 41 343 53 348 2.08e-71 226
MS.gene95543.t1 MTR_2g066980 36.872 358 165 14 7 343 1 318 2.61e-69 219
MS.gene95543.t1 MTR_2g015930 37.088 364 200 12 1 343 3 358 4.01e-67 215
MS.gene95543.t1 MTR_8g086470 38.199 322 164 9 32 343 60 356 1.06e-65 212
MS.gene95543.t1 MTR_4g071060 36.685 368 180 13 9 340 3 353 4.75e-65 210
MS.gene95543.t1 MTR_1g023210 36.982 338 170 12 23 335 33 352 6.17e-63 204
MS.gene95543.t1 MTR_1g023810 47.489 219 106 6 126 341 49 261 1.02e-61 198
MS.gene95543.t1 MTR_1g094135 35.014 357 197 11 7 340 19 363 1.03e-57 191
MS.gene95543.t1 MTR_4g072790 33.444 302 161 9 39 335 46 312 2.84e-43 152
MS.gene95543.t1 MTR_4g073660 33.333 303 158 9 41 335 49 315 2.53e-42 150
MS.gene95543.t1 MTR_4g072340 33.882 304 155 10 41 335 50 316 3.37e-42 149
MS.gene95543.t1 MTR_7g078580 63.265 98 35 1 245 342 4 100 3.22e-41 140
MS.gene95543.t1 MTR_2g015840 46.497 157 81 2 7 161 1 156 1.42e-40 144
MS.gene95543.t1 MTR_2g015840 55.357 112 49 1 232 343 161 271 2.09e-35 130
MS.gene95543.t1 MTR_7g079130 67.778 90 29 0 253 342 7 96 5.28e-39 134
MS.gene95543.t1 MTR_1g025450 40.331 181 83 7 126 302 55 214 1.87e-33 130
MS.gene95543.t1 MTR_7g078310 45.000 140 68 3 82 219 115 247 7.37e-29 112
MS.gene95543.t1 MTR_2g016380 46.667 120 59 3 227 343 18 135 3.02e-27 107
MS.gene95543.t1 MTR_7g111060 28.112 249 147 8 112 335 89 330 1.22e-23 100
MS.gene95543.t1 MTR_7g111050 27.969 261 154 9 110 343 84 337 1.03e-22 97.8
MS.gene95543.t1 MTR_3g029560 29.297 256 137 11 98 343 16 237 6.78e-22 93.2
MS.gene95543.t1 MTR_7g079260 58.333 72 14 1 269 340 7 62 7.84e-22 89.4
MS.gene95543.t1 MTR_8g087510 40.458 131 71 5 167 295 23 148 6.83e-20 85.9
MS.gene95543.t1 MTR_3g082370 26.961 204 129 5 131 319 5 203 8.68e-18 81.6
MS.gene95543.t1 MTR_2g047960 48.235 85 43 1 135 219 7 90 9.42e-18 77.8
MS.gene95543.t1 MTR_7g111050 25.792 221 136 7 110 305 79 296 7.25e-13 68.6
MS.gene95543.t1 MTR_1g042480 36.170 94 57 2 9 101 7 98 7.42e-12 62.4
MS.gene95543.t1 MTR_1g042360 36.170 94 57 2 9 101 7 98 7.42e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95543.t1 AT5G45890 56.232 345 141 6 7 343 3 345 4.57e-137 393
MS.gene95543.t1 AT5G50260 53.666 341 142 6 14 342 5 341 5.17e-127 368
MS.gene95543.t1 AT3G48340 54.942 344 137 8 12 342 4 342 3.84e-124 361
MS.gene95543.t1 AT3G49340 50.585 342 144 7 20 344 8 341 6.19e-120 350
MS.gene95543.t1 AT4G35350 51.445 346 152 7 7 343 14 352 1.73e-119 349
MS.gene95543.t1 AT3G19390 50.755 331 159 4 14 343 18 345 7.19e-118 348
MS.gene95543.t1 AT2G34080 48.246 342 166 5 10 344 8 345 8.77e-118 344
MS.gene95543.t1 AT2G27420 49.284 349 158 7 10 344 5 348 9.84e-116 339
MS.gene95543.t1 AT5G43060 53.067 326 139 7 24 342 34 352 2.50e-115 342
MS.gene95543.t1 AT3G48350 54.574 317 135 7 32 343 31 343 1.86e-114 337
MS.gene95543.t1 AT4G36880 50.769 325 142 6 32 343 42 361 2.72e-112 331
MS.gene95543.t1 AT1G20850 51.757 313 145 4 33 343 45 353 7.24e-112 330
MS.gene95543.t1 AT1G06260 50.729 343 150 7 9 342 9 341 1.06e-111 328
MS.gene95543.t1 AT3G19400 50.814 307 147 4 39 343 44 348 1.16e-111 329
MS.gene95543.t1 AT1G47128 52.104 309 136 7 39 342 50 351 3.92e-111 332
MS.gene95543.t1 AT1G29090 47.159 352 162 8 7 344 14 355 5.22e-110 325
MS.gene95543.t1 AT1G29080 45.481 343 165 7 15 344 13 346 5.17e-105 312
MS.gene95543.t1 AT1G09850 50.000 310 152 3 33 342 26 332 8.81e-104 312
MS.gene95543.t1 AT4G23520 45.714 350 165 9 10 342 7 348 1.08e-102 306
MS.gene95543.t1 AT4G11310 46.926 309 151 6 40 342 50 351 7.93e-99 296
MS.gene95543.t1 AT4G11320 45.955 309 154 6 40 342 57 358 5.55e-98 295
MS.gene95543.t1 AT4G11320 45.955 309 154 6 40 342 57 358 5.55e-98 295
MS.gene95543.t1 AT3G43960 43.505 331 180 6 16 342 18 345 2.88e-88 270
MS.gene95543.t1 AT1G29110 42.547 322 162 7 29 343 28 333 1.36e-86 264
MS.gene95543.t1 AT4G35350 48.929 280 127 7 7 277 14 286 4.48e-86 261
MS.gene95543.t1 AT3G19400 48.548 241 121 3 39 277 44 283 1.17e-77 240
MS.gene95543.t1 AT3G48350 52.191 251 111 7 32 277 31 277 1.26e-76 238
MS.gene95543.t1 AT5G60360 44.156 308 155 10 41 343 61 356 1.18e-73 232
MS.gene95543.t1 AT5G60360 43.831 308 155 11 41 343 61 355 4.33e-71 225
MS.gene95543.t1 AT3G45310 42.071 309 162 10 41 344 61 357 6.44e-70 222
MS.gene95543.t1 AT5G60360 43.289 298 156 9 41 333 61 350 2.55e-69 221
MS.gene95543.t1 AT3G45310 41.424 309 163 10 41 344 61 356 1.87e-67 216
MS.gene95543.t1 AT4G39090 39.365 315 158 11 45 340 57 357 1.14e-63 206
MS.gene95543.t1 AT2G21430 38.961 308 159 11 45 335 54 349 7.97e-63 204
MS.gene95543.t1 AT3G54940 37.888 322 159 11 38 335 50 354 3.28e-59 195
MS.gene95543.t1 AT4G16190 38.413 315 165 10 44 340 60 363 8.17e-59 194
MS.gene95543.t1 AT3G54940 36.910 233 130 5 38 259 50 276 1.22e-43 152
MS.gene95543.t1 AT1G02305 29.362 235 134 8 126 335 106 333 6.34e-24 101
MS.gene95543.t1 AT4G01610 29.362 235 134 8 126 335 103 330 3.96e-22 96.3
MS.gene95543.t1 AT4G01610 28.936 235 135 8 126 335 103 330 6.96e-21 92.8
MS.gene95543.t1 AT1G02300 29.717 212 121 7 145 335 146 350 7.47e-20 90.1
MS.gene95543.t1 AT2G22160 41.304 92 52 1 54 145 9 98 3.15e-15 71.2

Find 89 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGCATTGCTTCTATGTT+TGG 0.245347 4.3:+51059355 MS.gene95543:CDS
TCAATATGGTAAAGTTTATA+AGG 0.260293 4.3:+51059454 MS.gene95543:CDS
TGATAAAGAGATCAACTTTC+CGG 0.269436 4.3:-51059920 None:intergenic
AACACCTTGATAAGGGTAAT+TGG 0.282835 4.3:-51060055 None:intergenic
ATCAATGCAGTTACCATTAC+TGG 0.289989 4.3:+51060108 MS.gene95543:CDS
TTGGCATTGCTTCTATGTTT+GGG 0.292590 4.3:+51059356 MS.gene95543:CDS
AATATGATATAAGTGATTAT+TGG 0.319024 4.3:-51059330 None:intergenic
AGGTTGTGAGGGTGGTCTTA+TGG 0.350865 4.3:+51059984 MS.gene95543:CDS
AAATTCATCATTCAAAATCA+TGG 0.364764 4.3:+51060018 MS.gene95543:CDS
GAACTCTTGGGGAACCGATT+GGG 0.375688 4.3:+51060341 MS.gene95543:CDS
CATATTGACTCATCCATTGC+TGG 0.397472 4.3:-51059439 None:intergenic
TTGTAGTGCCTCCTCATTGT+TGG 0.398089 4.3:-51060148 None:intergenic
TCACTTATATCATATTTCAT+TGG 0.405472 4.3:+51059337 MS.gene95543:CDS
ATTGGTTGGTTAAGAACTCT+TGG 0.408910 4.3:+51060328 MS.gene95543:CDS
TTCATCTTGTAGGATGTTGT+TGG 0.410116 4.3:+51059851 MS.gene95543:intron
AGTAATGGTAACTGCATTGA+TGG 0.411113 4.3:-51060106 None:intergenic
CAGCAATGGATGAGTCAATA+TGG 0.420934 4.3:+51059440 MS.gene95543:CDS
TTGGTTGGTTAAGAACTCTT+GGG 0.431188 4.3:+51060329 MS.gene95543:CDS
GCATCAATGGCTACAGAAAT+CGG 0.431804 4.3:-51060189 None:intergenic
TCATCTTGTAGGATGTTGTT+GGG 0.435218 4.3:+51059852 MS.gene95543:intron
GGTGTTACCGCTGTGGGTTA+TGG 0.435442 4.3:+51060282 MS.gene95543:CDS
AGTCAATTTATGAATTCCTT+CGG 0.437717 4.3:-51059896 None:intergenic
TTCCGTCAACACCTTGATAA+GGG 0.456935 4.3:-51060062 None:intergenic
GTTCCGTCAACACCTTGATA+AGG 0.464383 4.3:-51060063 None:intergenic
TTGATAAGGGTAATTGGCTT+CGG 0.466155 4.3:-51060049 None:intergenic
CATTGTCCTTGGTTCTTCAC+CGG 0.468809 4.3:-51059740 None:intergenic
AGTGCCTCCTCATTGTTGGC+CGG 0.470764 4.3:-51060144 None:intergenic
TACCCTTATCAAGGTGTTGA+CGG 0.470988 4.3:+51060060 MS.gene95543:CDS
GTATCCTTCTTCGCCCCAAT+CGG 0.471265 4.3:-51060355 None:intergenic
TTTATAAGGATTCTCAAGAA+AGG 0.473803 4.3:+51059468 MS.gene95543:CDS
TCTCATACATGGAGTCATCT+TGG 0.474251 4.3:-51059412 None:intergenic
TTGCTGGTGCCTCTCATACA+TGG 0.480269 4.3:-51059423 None:intergenic
CAATTCCATCCTCAGTGGAT+TGG 0.480774 4.3:+51059696 MS.gene95543:CDS
GTCGGAACCACTAGCATCAA+TGG 0.480791 4.3:-51060202 None:intergenic
TTCCTCCAATCCACTGAGGA+TGG 0.487802 4.3:-51059701 None:intergenic
GTAACGATGGAATGAAGTAT+TGG 0.487859 4.3:+51060310 MS.gene95543:CDS
TTATAAGGATTCTCAAGAAA+GGG 0.488285 4.3:+51059469 MS.gene95543:CDS
TGGATCATGCGGAACTGAGT+TGG 0.493619 4.3:+51060254 MS.gene95543:CDS
GGAACCGATTGGGGCGAAGA+AGG 0.493777 4.3:+51060351 MS.gene95543:CDS
AGAACTCTTGGGGAACCGAT+TGG 0.493995 4.3:+51060340 MS.gene95543:CDS
GTGCCTCCTCATTGTTGGCC+GGG 0.499252 4.3:-51060143 None:intergenic
ATCGTCTAGAAACAAATTCA+AGG 0.505283 4.3:+51059616 MS.gene95543:CDS
TTCCATCCTCAGTGGATTGG+AGG 0.507592 4.3:+51059699 MS.gene95543:CDS
TCTGTAGCCATTGATGCTAG+TGG 0.514851 4.3:+51060195 MS.gene95543:CDS
GACTTTCAATTCTACAAAAG+CGG 0.515246 4.3:+51060222 MS.gene95543:CDS
CGATGGAATGAAGTATTGGT+TGG 0.517331 4.3:+51060314 MS.gene95543:CDS
CTCGTTGATTGTGACACAAA+AGG 0.517458 4.3:+51059952 MS.gene95543:CDS
TACATTGAAGCTTTCAACAA+AGG 0.517957 4.3:+51059527 MS.gene95543:CDS
AACTCTTGGGGAACCGATTG+GGG 0.521186 4.3:+51060342 MS.gene95543:CDS
TCAGTGGATTGGAGGAAGAA+AGG 0.529739 4.3:+51059707 MS.gene95543:CDS
GGAATTCATAAATTGACTAC+CGG 0.539888 4.3:+51059901 MS.gene95543:CDS
TACTGGGTATGAAGATGTCC+CGG 0.540326 4.3:+51060125 MS.gene95543:CDS
GTGGACCAAGGTTGTGAGGG+TGG 0.540762 4.3:+51059976 MS.gene95543:CDS
ACTAGGCATTAATCAATTTG+CGG 0.545109 4.3:+51059571 MS.gene95543:CDS
TGTATGAGAGGCACCAGCAA+TGG 0.552809 4.3:+51059426 MS.gene95543:CDS
GATGCTGCTGAAGGAATTTG+TGG 0.557209 4.3:+51060399 MS.gene95543:CDS
TCTGCTGTTGCAGCAACCGA+AGG 0.563495 4.3:+51059880 MS.gene95543:CDS
ATGTGAACTCGTCGTTGGTG+AGG 0.564366 4.3:-51059595 None:intergenic
TAAGTGATTATTGGCAGCCA+TGG 0.564524 4.3:-51059321 None:intergenic
AGACGATGTGAACTCGTCGT+TGG 0.573339 4.3:-51059600 None:intergenic
TCGTCTAGAAACAAATTCAA+GGG 0.573612 4.3:+51059617 MS.gene95543:CDS
GAAGCCAATTACCCTTATCA+AGG 0.574336 4.3:+51060051 MS.gene95543:CDS
TAAGACCACCCTCACAACCT+TGG 0.579957 4.3:-51059981 None:intergenic
TGGTTGGTTAAGAACTCTTG+GGG 0.580774 4.3:+51060330 MS.gene95543:CDS
TGCGGAACTGAGTTGGATCA+TGG 0.581901 4.3:+51060261 MS.gene95543:CDS
GATCATGGTGTTACCGCTGT+GGG 0.595355 4.3:+51060276 MS.gene95543:CDS
GGTTATGGTGTTAGTAACGA+TGG 0.598578 4.3:+51060297 MS.gene95543:CDS
GACATCTTCATACCCAGTAA+TGG 0.599023 4.3:-51060121 None:intergenic
AGAGGAGTTGATGCTGCTGA+AGG 0.602244 4.3:+51060390 MS.gene95543:CDS
GAAGAAAGGAGCAGTGACAC+CGG 0.603366 4.3:+51059721 MS.gene95543:CDS
GGATCATGGTGTTACCGCTG+TGG 0.606355 4.3:+51060275 MS.gene95543:CDS
GGTGTGGACCAAGGTTGTGA+GGG 0.614905 4.3:+51059973 MS.gene95543:CDS
TCAATGCAGTTACCATTACT+GGG 0.616110 4.3:+51060109 MS.gene95543:CDS
GGAACATGCAATGCAAACAA+AGG 0.625136 4.3:+51060081 MS.gene95543:CDS
AGGTGTGGACCAAGGTTGTG+AGG 0.640947 4.3:+51059972 MS.gene95543:CDS
AAGATGACTCCATGTATGAG+AGG 0.643922 4.3:+51059414 MS.gene95543:CDS
ATATGTGCTCTTCAATCACA+AGG 0.656906 4.3:+51059642 MS.gene95543:CDS
AATAACAAGCTATACACACT+AGG 0.659674 4.3:+51059554 MS.gene95543:CDS
AGATGTCCCGGCCAACAATG+AGG 0.660249 4.3:+51060137 MS.gene95543:CDS
CGTCTAGAAACAAATTCAAG+GGG 0.665171 4.3:+51059618 MS.gene95543:CDS
TTTCTTCCTCCAATCCACTG+AGG 0.673228 4.3:-51059705 None:intergenic
GGATACATTATGATGCAAAG+AGG 0.676444 4.3:+51060372 MS.gene95543:CDS
GTGACACCGGTGAAGAACCA+AGG 0.685861 4.3:+51059734 MS.gene95543:CDS
TGATTGTGACACAAAAGGTG+TGG 0.687369 4.3:+51059957 MS.gene95543:CDS
TGTCCCGGCCAACAATGAGG+AGG 0.695292 4.3:+51060140 MS.gene95543:CDS
GTGAAGAACCAAGGACAATG+TGG 0.702779 4.3:+51059743 MS.gene95543:CDS
GACACAAAAGGTGTGGACCA+AGG 0.716503 4.3:+51059964 MS.gene95543:CDS
AAGCGCAATTCCATCCTCAG+TGG 0.731023 4.3:+51059691 MS.gene95543:CDS
ACTAACACCATAACCCACAG+CGG 0.792350 4.3:-51060289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAATATAATAGAGTT+AGG - chr4.3:51059831-51059850 None:intergenic 10.0%
!! AATATGATATAAGTGATTAT+TGG - chr4.3:51059333-51059352 None:intergenic 15.0%
!!! TATTTTAATTTTCATCTTGT+AGG + chr4.3:51059841-51059860 MS.gene95543:intron 15.0%
!! AAATTCATCATTCAAAATCA+TGG + chr4.3:51060018-51060037 MS.gene95543:CDS 20.0%
!! TCAATATGGTAAAGTTTATA+AGG + chr4.3:51059454-51059473 MS.gene95543:CDS 20.0%
!! TCACTTATATCATATTTCAT+TGG + chr4.3:51059337-51059356 MS.gene95543:CDS 20.0%
! AGTCAATTTATGAATTCCTT+CGG - chr4.3:51059899-51059918 None:intergenic 25.0%
! TTATAAGGATTCTCAAGAAA+GGG + chr4.3:51059469-51059488 MS.gene95543:CDS 25.0%
! TTTATAAGGATTCTCAAGAA+AGG + chr4.3:51059468-51059487 MS.gene95543:CDS 25.0%
AATAACAAGCTATACACACT+AGG + chr4.3:51059554-51059573 MS.gene95543:CDS 30.0%
ACTAGGCATTAATCAATTTG+CGG + chr4.3:51059571-51059590 MS.gene95543:CDS 30.0%
ATCGTCTAGAAACAAATTCA+AGG + chr4.3:51059616-51059635 MS.gene95543:CDS 30.0%
GACTTTCAATTCTACAAAAG+CGG + chr4.3:51060222-51060241 MS.gene95543:CDS 30.0%
GGAATTCATAAATTGACTAC+CGG + chr4.3:51059901-51059920 MS.gene95543:CDS 30.0%
TACATTGAAGCTTTCAACAA+AGG + chr4.3:51059527-51059546 MS.gene95543:CDS 30.0%
TCGTCTAGAAACAAATTCAA+GGG + chr4.3:51059617-51059636 MS.gene95543:CDS 30.0%
TGATAAAGAGATCAACTTTC+CGG - chr4.3:51059923-51059942 None:intergenic 30.0%
! GCTTTTGTAGAATTGAAAGT+CGG - chr4.3:51060223-51060242 None:intergenic 30.0%
AACACCTTGATAAGGGTAAT+TGG - chr4.3:51060058-51060077 None:intergenic 35.0%
AGTAATGGTAACTGCATTGA+TGG - chr4.3:51060109-51060128 None:intergenic 35.0%
ATATGTGCTCTTCAATCACA+AGG + chr4.3:51059642-51059661 MS.gene95543:CDS 35.0%
ATCAATGCAGTTACCATTAC+TGG + chr4.3:51060108-51060127 MS.gene95543:CDS 35.0%
ATTGGCATTGCTTCTATGTT+TGG + chr4.3:51059355-51059374 MS.gene95543:CDS 35.0%
CGTCTAGAAACAAATTCAAG+GGG + chr4.3:51059618-51059637 MS.gene95543:CDS 35.0%
GGATACATTATGATGCAAAG+AGG + chr4.3:51060372-51060391 MS.gene95543:CDS 35.0%
GTAACGATGGAATGAAGTAT+TGG + chr4.3:51060310-51060329 MS.gene95543:CDS 35.0%
TCAATGCAGTTACCATTACT+GGG + chr4.3:51060109-51060128 MS.gene95543:CDS 35.0%
TCATCTTGTAGGATGTTGTT+GGG + chr4.3:51059852-51059871 MS.gene95543:intron 35.0%
TTCATCTTGTAGGATGTTGT+TGG + chr4.3:51059851-51059870 MS.gene95543:intron 35.0%
TTGGCATTGCTTCTATGTTT+GGG + chr4.3:51059356-51059375 MS.gene95543:CDS 35.0%
! ATTGGTTGGTTAAGAACTCT+TGG + chr4.3:51060328-51060347 MS.gene95543:CDS 35.0%
! TTGATAAGGGTAATTGGCTT+CGG - chr4.3:51060052-51060071 None:intergenic 35.0%
! TTGGTTGGTTAAGAACTCTT+GGG + chr4.3:51060329-51060348 MS.gene95543:CDS 35.0%
!! AAAAAGTACCACATTGTCCT+TGG - chr4.3:51059754-51059773 None:intergenic 35.0%
AAGATGACTCCATGTATGAG+AGG + chr4.3:51059414-51059433 MS.gene95543:CDS 40.0%
CAGCAATGGATGAGTCAATA+TGG + chr4.3:51059440-51059459 MS.gene95543:CDS 40.0%
GAAGCCAATTACCCTTATCA+AGG + chr4.3:51060051-51060070 MS.gene95543:CDS 40.0%
GACATCTTCATACCCAGTAA+TGG - chr4.3:51060124-51060143 None:intergenic 40.0%
GCATCAATGGCTACAGAAAT+CGG - chr4.3:51060192-51060211 None:intergenic 40.0%
GGAACATGCAATGCAAACAA+AGG + chr4.3:51060081-51060100 MS.gene95543:CDS 40.0%
TCTCATACATGGAGTCATCT+TGG - chr4.3:51059415-51059434 None:intergenic 40.0%
TGATTGTGACACAAAAGGTG+TGG + chr4.3:51059957-51059976 MS.gene95543:CDS 40.0%
TTCCGTCAACACCTTGATAA+GGG - chr4.3:51060065-51060084 None:intergenic 40.0%
! CTCGTTGATTGTGACACAAA+AGG + chr4.3:51059952-51059971 MS.gene95543:CDS 40.0%
! GGTTATGGTGTTAGTAACGA+TGG + chr4.3:51060297-51060316 MS.gene95543:CDS 40.0%
! TACAAAAGCGGTGTTTTCAC+TGG + chr4.3:51060234-51060253 MS.gene95543:CDS 40.0%
! TGGTTGGTTAAGAACTCTTG+GGG + chr4.3:51060330-51060349 MS.gene95543:CDS 40.0%
!! CATATTGACTCATCCATTGC+TGG - chr4.3:51059442-51059461 None:intergenic 40.0%
!! CGATGGAATGAAGTATTGGT+TGG + chr4.3:51060314-51060333 MS.gene95543:CDS 40.0%
!! TACCCTTATCAAGGTGTTGA+CGG + chr4.3:51060060-51060079 MS.gene95543:CDS 40.0%
ACTAACACCATAACCCACAG+CGG - chr4.3:51060292-51060311 None:intergenic 45.0%
CAATTCCATCCTCAGTGGAT+TGG + chr4.3:51059696-51059715 MS.gene95543:CDS 45.0%
GATGCTGCTGAAGGAATTTG+TGG + chr4.3:51060399-51060418 MS.gene95543:CDS 45.0%
GTGAAGAACCAAGGACAATG+TGG + chr4.3:51059743-51059762 MS.gene95543:CDS 45.0%
GTTCCGTCAACACCTTGATA+AGG - chr4.3:51060066-51060085 None:intergenic 45.0%
TACTGGGTATGAAGATGTCC+CGG + chr4.3:51060125-51060144 MS.gene95543:CDS 45.0%
TCTGTAGCCATTGATGCTAG+TGG + chr4.3:51060195-51060214 MS.gene95543:CDS 45.0%
TTGTAGTGCCTCCTCATTGT+TGG - chr4.3:51060151-51060170 None:intergenic 45.0%
TTTCTTCCTCCAATCCACTG+AGG - chr4.3:51059708-51059727 None:intergenic 45.0%
! CATTGTCCTTGGTTCTTCAC+CGG - chr4.3:51059743-51059762 None:intergenic 45.0%
! GGTGTTTTCACTGGATCATG+CGG + chr4.3:51060243-51060262 MS.gene95543:CDS 45.0%
!! TCAGTGGATTGGAGGAAGAA+AGG + chr4.3:51059707-51059726 MS.gene95543:CDS 45.0%
AACTCTTGGGGAACCGATTG+GGG + chr4.3:51060342-51060361 MS.gene95543:CDS 50.0%
AAGCGCAATTCCATCCTCAG+TGG + chr4.3:51059691-51059710 MS.gene95543:CDS 50.0%
AGAACTCTTGGGGAACCGAT+TGG + chr4.3:51060340-51060359 MS.gene95543:CDS 50.0%
AGACGATGTGAACTCGTCGT+TGG - chr4.3:51059603-51059622 None:intergenic 50.0%
ATGTGAACTCGTCGTTGGTG+AGG - chr4.3:51059598-51059617 None:intergenic 50.0%
GAACTCTTGGGGAACCGATT+GGG + chr4.3:51060341-51060360 MS.gene95543:CDS 50.0%
GAAGAAAGGAGCAGTGACAC+CGG + chr4.3:51059721-51059740 MS.gene95543:CDS 50.0%
GTATCCTTCTTCGCCCCAAT+CGG - chr4.3:51060358-51060377 None:intergenic 50.0%
GTCGGAACCACTAGCATCAA+TGG - chr4.3:51060205-51060224 None:intergenic 50.0%
TAAGACCACCCTCACAACCT+TGG - chr4.3:51059984-51060003 None:intergenic 50.0%
TGGATCATGCGGAACTGAGT+TGG + chr4.3:51060254-51060273 MS.gene95543:CDS 50.0%
TTCCTCCAATCCACTGAGGA+TGG - chr4.3:51059704-51059723 None:intergenic 50.0%
TTGCTGGTGCCTCTCATACA+TGG - chr4.3:51059426-51059445 None:intergenic 50.0%
! AGGTTGTGAGGGTGGTCTTA+TGG + chr4.3:51059984-51060003 MS.gene95543:CDS 50.0%
! GACACAAAAGGTGTGGACCA+AGG + chr4.3:51059964-51059983 MS.gene95543:CDS 50.0%
! TGCGGAACTGAGTTGGATCA+TGG + chr4.3:51060261-51060280 MS.gene95543:CDS 50.0%
!! AGAGGAGTTGATGCTGCTGA+AGG + chr4.3:51060390-51060409 MS.gene95543:CDS 50.0%
!! GATCATGGTGTTACCGCTGT+GGG + chr4.3:51060276-51060295 MS.gene95543:CDS 50.0%
!! GGAGGCACTACAAAAAGCAG+TGG + chr4.3:51060158-51060177 MS.gene95543:CDS 50.0%
!! TGTATGAGAGGCACCAGCAA+TGG + chr4.3:51059426-51059445 MS.gene95543:CDS 50.0%
!! TTCCATCCTCAGTGGATTGG+AGG + chr4.3:51059699-51059718 MS.gene95543:CDS 50.0%
AGATGTCCCGGCCAACAATG+AGG + chr4.3:51060137-51060156 MS.gene95543:CDS 55.0%
AGGTGTGGACCAAGGTTGTG+AGG + chr4.3:51059972-51059991 MS.gene95543:CDS 55.0%
AGTGCCTCCTCATTGTTGGC+CGG - chr4.3:51060147-51060166 None:intergenic 55.0%
GGTGTGGACCAAGGTTGTGA+GGG + chr4.3:51059973-51059992 MS.gene95543:CDS 55.0%
GTGACACCGGTGAAGAACCA+AGG + chr4.3:51059734-51059753 MS.gene95543:CDS 55.0%
TCTGCTGTTGCAGCAACCGA+AGG + chr4.3:51059880-51059899 MS.gene95543:CDS 55.0%
! GGTGTTACCGCTGTGGGTTA+TGG + chr4.3:51060282-51060301 MS.gene95543:CDS 55.0%
!! GGATCATGGTGTTACCGCTG+TGG + chr4.3:51060275-51060294 MS.gene95543:CDS 55.0%
GGAACCGATTGGGGCGAAGA+AGG + chr4.3:51060351-51060370 MS.gene95543:CDS 60.0%
GTGCCTCCTCATTGTTGGCC+GGG - chr4.3:51060146-51060165 None:intergenic 60.0%
GTGGACCAAGGTTGTGAGGG+TGG + chr4.3:51059976-51059995 MS.gene95543:CDS 60.0%
TGTCCCGGCCAACAATGAGG+AGG + chr4.3:51060140-51060159 MS.gene95543:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 51059323 51060455 51059323 ID=MS.gene95543
chr4.3 mRNA 51059323 51060455 51059323 ID=MS.gene95543.t1;Parent=MS.gene95543
chr4.3 exon 51059323 51059764 51059323 ID=MS.gene95543.t1.exon1;Parent=MS.gene95543.t1
chr4.3 CDS 51059323 51059764 51059323 ID=cds.MS.gene95543.t1;Parent=MS.gene95543.t1
chr4.3 exon 51059863 51060455 51059863 ID=MS.gene95543.t1.exon2;Parent=MS.gene95543.t1
chr4.3 CDS 51059863 51060455 51059863 ID=cds.MS.gene95543.t1;Parent=MS.gene95543.t1
Gene Sequence

>MS.gene95543

ATGGCTGCCAATAATCACTTATATCATATTTCATTGGCATTGCTTCTATGTTTGGGATTGTTTGCGATTCAAGTCACTTCTCGTACTCTCCAAGATGACTCCATGTATGAGAGGCACCAGCAATGGATGAGTCAATATGGTAAAGTTTATAAGGATTCTCAAGAAAGGGAGAAGCGTTTCAAGATATTCACTGAAAACGTGAATTACATTGAAGCTTTCAACAAAGGTGACAATAACAAGCTATACACACTAGGCATTAATCAATTTGCGGACCTCACCAACGACGAGTTCACATCGTCTAGAAACAAATTCAAGGGGCATATGTGCTCTTCAATCACAAGGACAAGTACTTTTAAGTATGAAAATGCAAGCGCAATTCCATCCTCAGTGGATTGGAGGAAGAAAGGAGCAGTGACACCGGTGAAGAACCAAGGACAATGTGGTACTTTTTCGTCTAACAAGTAATGCATTCGATTATGTATGTGATAAAAAAAATTAGTTATCACCTAACTCTATTATATTTTAATTTTCATCTTGTAGGATGTTGTTGGGCGTTTTCTGCTGTTGCAGCAACCGAAGGAATTCATAAATTGACTACCGGAAAGTTGATCTCTTTATCAGAACAAGAACTCGTTGATTGTGACACAAAAGGTGTGGACCAAGGTTGTGAGGGTGGTCTTATGGACGATGCTTTCAAATTCATCATTCAAAATCATGGACTCGCTACCGAAGCCAATTACCCTTATCAAGGTGTTGACGGAACATGCAATGCAAACAAAGGATCCATCAATGCAGTTACCATTACTGGGTATGAAGATGTCCCGGCCAACAATGAGGAGGCACTACAAAAAGCAGTGGCTAATCAACCGATTTCTGTAGCCATTGATGCTAGTGGTTCCGACTTTCAATTCTACAAAAGCGGTGTTTTCACTGGATCATGCGGAACTGAGTTGGATCATGGTGTTACCGCTGTGGGTTATGGTGTTAGTAACGATGGAATGAAGTATTGGTTGGTTAAGAACTCTTGGGGAACCGATTGGGGCGAAGAAGGATACATTATGATGCAAAGAGGAGTTGATGCTGCTGAAGGAATTTGTGGCATTGCAATGCAAGCATCATACCCTACTGCTTAA
Protein sequence

>MS.gene95543.t1

MAANNHLYHISLALLLCLGLFAIQVTSRTLQDDSMYERHQQWMSQYGKVYKDSQEREKRFKIFTENVNYIEAFNKGDNNKLYTLGINQFADLTNDEFTSSRNKFKGHMCSSITRTSTFKYENASAIPSSVDWRKKGAVTPVKNQGQCGCCWAFSAVAATEGIHKLTTGKLISLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLATEANYPYQGVDGTCNANKGSINAVTITGYEDVPANNEEALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSNDGMKYWLVKNSWGTDWGEEGYIMMQRGVDAAEGICGIAMQASYPTA