Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98141.t1 | GAU16166.1 | 91.2 | 136 | 11 | 1 | 1 | 135 | 1 | 136 | 5.70E-56 | 226.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98141.t1 | B2RYG1 | 37.3 | 67 | 42 | 0 | 66 | 132 | 42 | 108 | 9.4e-07 | 54.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98141.t1 | A0A2K3NLX9 | 91.2 | 136 | 11 | 1 | 1 | 135 | 1 | 136 | 4.1e-56 | 226.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene98141 | 0.808015 | 3.81E-50 | -1.69E-46 |
| MS.gene049756 | MS.gene98141 | 0.801439 | 9.00E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene98141 | 0.835977 | 1.23E-56 | -1.69E-46 |
| MS.gene050303 | MS.gene98141 | 0.823253 | 1.53E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene98141 | -0.801438 | 9.00E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene98141 | 0.821673 | 3.56E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene98141 | 0.825784 | 3.88E-54 | -1.69E-46 |
| MS.gene050724 | MS.gene98141 | 0.814161 | 1.77E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene98141 | 0.828209 | 1.02E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene98141 | 0.801557 | 8.51E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene98141 | 0.810991 | 8.75E-51 | -1.69E-46 |
| MS.gene051243 | MS.gene98141 | 0.84787 | 8.79E-60 | -1.69E-46 |
| MS.gene051245 | MS.gene98141 | 0.841041 | 6.04E-58 | -1.69E-46 |
| MS.gene051349 | MS.gene98141 | 0.816297 | 5.95E-52 | -1.69E-46 |
| MS.gene05134 | MS.gene98141 | 0.805778 | 1.13E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene98141 | 0.816313 | 5.90E-52 | -1.69E-46 |
| MS.gene051633 | MS.gene98141 | 0.819833 | 9.44E-53 | -1.69E-46 |
| MS.gene051757 | MS.gene98141 | 0.811587 | 6.50E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene98141 | 0.80742 | 5.10E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene98141 | 0.809614 | 1.73E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene98141 | 0.815022 | 1.14E-51 | -1.69E-46 |
| MS.gene052286 | MS.gene98141 | 0.844062 | 9.54E-59 | -1.69E-46 |
| MS.gene052302 | MS.gene98141 | 0.81708 | 3.97E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene98141 | -0.830444 | 2.93E-55 | -1.69E-46 |
| MS.gene052376 | MS.gene98141 | 0.821657 | 3.59E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene98141 | 0.805733 | 1.16E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene98141 | 0.803774 | 2.97E-49 | -1.69E-46 |
| MS.gene053045 | MS.gene98141 | 0.801492 | 8.78E-49 | -1.69E-46 |
| MS.gene053188 | MS.gene98141 | 0.808448 | 3.08E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene98141 | 0.827878 | 1.23E-54 | -1.69E-46 |
| MS.gene054657 | MS.gene98141 | 0.813625 | 2.33E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene98141 | 0.828621 | 8.12E-55 | -1.69E-46 |
| MS.gene055623 | MS.gene98141 | 0.818548 | 1.85E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene98141 | 0.839854 | 1.24E-57 | -1.69E-46 |
| MS.gene056760 | MS.gene98141 | 0.820852 | 5.51E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene98141 | 0.804153 | 2.48E-49 | -1.69E-46 |
| MS.gene057079 | MS.gene98141 | 0.836268 | 1.03E-56 | -1.69E-46 |
| MS.gene057140 | MS.gene98141 | 0.843837 | 1.10E-58 | -1.69E-46 |
| MS.gene057234 | MS.gene98141 | 0.822223 | 2.66E-53 | -1.69E-46 |
| MS.gene057392 | MS.gene98141 | 0.804613 | 1.99E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene98141 | 0.819459 | 1.15E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene98141 | 0.806031 | 1.00E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene98141 | 0.806609 | 7.57E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene98141 | 0.812991 | 3.21E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene98141 | 0.847384 | 1.20E-59 | -1.69E-46 |
| MS.gene058399 | MS.gene98141 | 0.806709 | 7.21E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene98141 | 0.837823 | 4.14E-57 | -1.69E-46 |
| MS.gene059569 | MS.gene98141 | 0.803169 | 3.96E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene98141 | 0.805102 | 1.57E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene98141 | 0.804227 | 2.39E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene98141 | 0.80019 | 1.62E-48 | -1.69E-46 |
| MS.gene060297 | MS.gene98141 | 0.841033 | 6.07E-58 | -1.69E-46 |
| MS.gene060572 | MS.gene98141 | 0.830446 | 2.92E-55 | -1.69E-46 |
| MS.gene060586 | MS.gene98141 | 0.829651 | 4.57E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98141.t1 | MTR_4g005440 | 97.794 | 136 | 2 | 1 | 1 | 135 | 1 | 136 | 3.67e-94 | 268 |
| MS.gene98141.t1 | MTR_3g108730 | 51.471 | 136 | 50 | 2 | 1 | 135 | 1 | 121 | 7.06e-37 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98141.t1 | AT1G16810 | 59.722 | 144 | 49 | 3 | 1 | 135 | 1 | 144 | 3.20e-45 | 144 |
| MS.gene98141.t1 | AT1G16810 | 59.722 | 144 | 49 | 3 | 1 | 135 | 1 | 144 | 3.20e-45 | 144 |
| MS.gene98141.t1 | AT1G16810 | 59.722 | 144 | 49 | 3 | 1 | 135 | 1 | 144 | 3.20e-45 | 144 |
Find 29 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTACTTCTTGATCATT+AGG | 0.263557 | 4.1:-89191606 | None:intergenic |
| CGCTCATGTTTGCGAGATAT+TGG | 0.302036 | 4.1:-89191785 | None:intergenic |
| AATCATCCAGGACCAACTTT+AGG | 0.309675 | 4.1:-89191822 | None:intergenic |
| GTGAGATTTATTAGAAATCT+TGG | 0.347606 | 4.1:-89191739 | None:intergenic |
| CGAGATATTGGTTGAAATCC+TGG | 0.357664 | 4.1:-89191773 | None:intergenic |
| GCAACTTGATGTTCATAGAT+TGG | 0.407231 | 4.1:+89191716 | MS.gene98141:CDS |
| GGAAAAGCATTGGATGTTGC+TGG | 0.421175 | 4.1:+89190554 | MS.gene98141:CDS |
| ATGATGGGAGTGAATTGAGC+AGG | 0.471811 | 4.1:+89191625 | MS.gene98141:CDS |
| CATTATGATATTCCTAAAGT+TGG | 0.473152 | 4.1:+89191810 | MS.gene98141:CDS |
| AATGATCAAGAAGTAAATGA+TGG | 0.482714 | 4.1:+89191609 | MS.gene98141:CDS |
| GATATTCCTAAAGTTGGTCC+TGG | 0.485583 | 4.1:+89191816 | MS.gene98141:CDS |
| TCTATGTACCGCCTCTCTGC+TGG | 0.489804 | 4.1:-89191684 | None:intergenic |
| ATCTCACCGCGATAGAATCC+AGG | 0.518832 | 4.1:+89191755 | MS.gene98141:CDS |
| GAAGCTGAAGGGAAAAGCAT+TGG | 0.531649 | 4.1:+89190544 | MS.gene98141:CDS |
| ACTGAAGATGAAATCTCAGC+AGG | 0.540124 | 4.1:+89190632 | MS.gene98141:CDS |
| AGATGATCATCATAATGAGC+AGG | 0.545898 | 4.1:-89191657 | None:intergenic |
| AACAACTCCTTGAATCATCC+AGG | 0.551401 | 4.1:-89191834 | None:intergenic |
| TCGGCATATGAGAATGTTGT+TGG | 0.556165 | 4.1:+89190512 | MS.gene98141:CDS |
| TGATGGGAGTGAATTGAGCA+GGG | 0.558875 | 4.1:+89191626 | MS.gene98141:CDS |
| ATGATCAAGAAGTAAATGAT+GGG | 0.571574 | 4.1:+89191610 | MS.gene98141:CDS |
| GAGGCGGTACATAGAACAGA+GGG | 0.618835 | 4.1:+89191692 | MS.gene98141:CDS |
| ATCTTACACCAGCAGAGAGG+CGG | 0.643614 | 4.1:+89191676 | MS.gene98141:CDS |
| GCATATGAGAATGTTGTTGG+TGG | 0.647733 | 4.1:+89190515 | MS.gene98141:CDS |
| TGAAATCCTGGATTCTATCG+CGG | 0.661087 | 4.1:-89191761 | None:intergenic |
| AGAGGCGGTACATAGAACAG+AGG | 0.666218 | 4.1:+89191691 | MS.gene98141:CDS |
| TGGTGGTAAACTGAAGCTGA+AGG | 0.678860 | 4.1:+89190532 | MS.gene98141:CDS |
| AAAGCATTGGATGTTGCTGG+CGG | 0.694873 | 4.1:+89190557 | MS.gene98141:CDS |
| GGTGGTAAACTGAAGCTGAA+GGG | 0.696896 | 4.1:+89190533 | MS.gene98141:CDS |
| ATCATCTTACACCAGCAGAG+AGG | 0.709383 | 4.1:+89191673 | MS.gene98141:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATGTTCAAGTA+AGG | - | chr4.1:89190997-89191016 | None:intergenic | 15.0% |
| !! | TAAATATATTGCACAATTTA+TGG | - | chr4.1:89191528-89191547 | None:intergenic | 15.0% |
| !!! | CATAGTATTATGTTTTAAAA+TGG | + | chr4.1:89190746-89190765 | MS.gene98141:intron | 15.0% |
| !!! | TCAACAATAAATATCATTTT+CGG | + | chr4.1:89191061-89191080 | MS.gene98141:intron | 15.0% |
| !!! | TTTTTTACTGAAAATCATAA+GGG | + | chr4.1:89191011-89191030 | MS.gene98141:intron | 15.0% |
| !!! | TTTTTTTACTGAAAATCATA+AGG | + | chr4.1:89191010-89191029 | MS.gene98141:intron | 15.0% |
| !! | AACTAAAACCAAAAAGATTA+AGG | - | chr4.1:89191503-89191522 | None:intergenic | 20.0% |
| !! | ATTATAGTAAATGAGTATCT+GGG | + | chr4.1:89190928-89190947 | MS.gene98141:intron | 20.0% |
| !! | GAGTATTATAACAATATGAA+TGG | + | chr4.1:89191295-89191314 | MS.gene98141:intron | 20.0% |
| !! | TTTCTCATCATAATTTCTTT+GGG | - | chr4.1:89190862-89190881 | None:intergenic | 20.0% |
| !!! | GATTTTGAAAGAAAAAGAAA+AGG | - | chr4.1:89191450-89191469 | None:intergenic | 20.0% |
| !!! | TTATGTTTTAAAATGGTCAA+TGG | + | chr4.1:89190753-89190772 | MS.gene98141:intron | 20.0% |
| !!! | TTTTCTCATCATAATTTCTT+TGG | - | chr4.1:89190863-89190882 | None:intergenic | 20.0% |
| ! | AAAAGATTAAGGATCTGTTT+CGG | - | chr4.1:89191492-89191511 | None:intergenic | 25.0% |
| ! | AATGATCAAGAAGTAAATGA+TGG | + | chr4.1:89191609-89191628 | MS.gene98141:CDS | 25.0% |
| ! | ATGATCAAGAAGTAAATGAT+GGG | + | chr4.1:89191610-89191629 | MS.gene98141:CDS | 25.0% |
| ! | CATTATGATATTCCTAAAGT+TGG | + | chr4.1:89191810-89191829 | MS.gene98141:CDS | 25.0% |
| ! | GATTATAGTAAATGAGTATC+TGG | + | chr4.1:89190927-89190946 | MS.gene98141:intron | 25.0% |
| ! | GTGAGATTTATTAGAAATCT+TGG | - | chr4.1:89191742-89191761 | None:intergenic | 25.0% |
| ! | TAATACAAAATCCCCTAATT+TGG | - | chr4.1:89191361-89191380 | None:intergenic | 25.0% |
| ! | TCATTTACTTCTTGATCATT+AGG | - | chr4.1:89191609-89191628 | None:intergenic | 25.0% |
| ! | TTGAAAGAAAAAGAAAAGGA+AGG | - | chr4.1:89191446-89191465 | None:intergenic | 25.0% |
| !! | AAACAGATCCTTAATCTTTT+TGG | + | chr4.1:89191492-89191511 | MS.gene98141:intron | 25.0% |
| !! | ATAAATATCATTTTCGGCAA+TGG | + | chr4.1:89191067-89191086 | MS.gene98141:intron | 25.0% |
| !! | TAAATATCATTTTCGGCAAT+GGG | + | chr4.1:89191068-89191087 | MS.gene98141:intron | 25.0% |
| !!! | TTTTTGGTTTACATTTCCTA+AGG | + | chr4.1:89191145-89191164 | MS.gene98141:intron | 25.0% |
| AAAGAAAAAGAAAAGGAAGG+AGG | - | chr4.1:89191443-89191462 | None:intergenic | 30.0% | |
| CATAATTTCTTTGGGTCAAA+AGG | - | chr4.1:89190854-89190873 | None:intergenic | 30.0% | |
| CCACCTACATTAAATACAAA+TGG | - | chr4.1:89191564-89191583 | None:intergenic | 30.0% | |
| CCATTTGTATTTAATGTAGG+TGG | + | chr4.1:89191561-89191580 | MS.gene98141:intron | 30.0% | |
| GAAGGACTCAAAAAATGTAT+TGG | - | chr4.1:89191339-89191358 | None:intergenic | 30.0% | |
| GTAAGATGTAACAAGAATCA+AGG | - | chr4.1:89190723-89190742 | None:intergenic | 30.0% | |
| TAACAAGAATCAAGGCAAAT+AGG | - | chr4.1:89190715-89190734 | None:intergenic | 30.0% | |
| TCAAATAACCTAGATTGCAA+TGG | - | chr4.1:89190909-89190928 | None:intergenic | 30.0% | |
| ! | TGTATGAATTTTGCAAGAAC+AGG | + | chr4.1:89190883-89190902 | MS.gene98141:intron | 30.0% |
| ! | TTTGTAGTCACTGTTCTTTT+TGG | + | chr4.1:89191129-89191148 | MS.gene98141:intron | 30.0% |
| !! | GTGCCATTTGTATTTAATGT+AGG | + | chr4.1:89191558-89191577 | MS.gene98141:intron | 30.0% |
| !! | TTTTGAGTCCTTCCAAATTA+GGG | + | chr4.1:89191346-89191365 | MS.gene98141:intron | 30.0% |
| !!! | TTTTTGAGTCCTTCCAAATT+AGG | + | chr4.1:89191345-89191364 | MS.gene98141:intron | 30.0% |
| AATCAACTACGTTGCATAAC+AGG | - | chr4.1:89191110-89191129 | None:intergenic | 35.0% | |
| ACAAAATCCCCTAATTTGGA+AGG | - | chr4.1:89191357-89191376 | None:intergenic | 35.0% | |
| AGATGATCATCATAATGAGC+AGG | - | chr4.1:89191660-89191679 | None:intergenic | 35.0% | |
| GCAACTTGATGTTCATAGAT+TGG | + | chr4.1:89191716-89191735 | MS.gene98141:CDS | 35.0% | |
| GGACTCAAAAAATGTATTGG+AGG | - | chr4.1:89191336-89191355 | None:intergenic | 35.0% | |
| TTTGAGTCCTTCCAAATTAG+GGG | + | chr4.1:89191347-89191366 | MS.gene98141:intron | 35.0% | |
| AAAGAAAAGGAAGGAGGAAG+TGG | - | chr4.1:89191437-89191456 | None:intergenic | 40.0% | |
| ACTGAAGATGAAATCTCAGC+AGG | + | chr4.1:89190632-89190651 | MS.gene98141:CDS | 40.0% | |
| CTGAAAATCATAAGGGACAG+TGG | + | chr4.1:89191018-89191037 | MS.gene98141:intron | 40.0% | |
| GCATATGAGAATGTTGTTGG+TGG | + | chr4.1:89190515-89190534 | MS.gene98141:CDS | 40.0% | |
| TAAGGATCTGTTTCGGAGTT+TGG | - | chr4.1:89191485-89191504 | None:intergenic | 40.0% | |
| TCGGCATATGAGAATGTTGT+TGG | + | chr4.1:89190512-89190531 | MS.gene98141:CDS | 40.0% | |
| TGAAATCCTGGATTCTATCG+CGG | - | chr4.1:89191764-89191783 | None:intergenic | 40.0% | |
| TTCTGTTTGATGTGCTGCAA+TGG | + | chr4.1:89190776-89190795 | MS.gene98141:intron | 40.0% | |
| ! | CGAGATATTGGTTGAAATCC+TGG | - | chr4.1:89191776-89191795 | None:intergenic | 40.0% |
| ! | GATATTCCTAAAGTTGGTCC+TGG | + | chr4.1:89191816-89191835 | MS.gene98141:CDS | 40.0% |
| ! | GCAATGGGTTTCAGTAAACA+GGG | + | chr4.1:89191083-89191102 | MS.gene98141:intron | 40.0% |
| AAAAGGAAGGAGGAAGTGGA+GGG | - | chr4.1:89191433-89191452 | None:intergenic | 45.0% | |
| ACATTTCCTAAGGCTCCGTT+CGG | + | chr4.1:89191155-89191174 | MS.gene98141:intron | 45.0% | |
| AGAACAGGCCATTGCAATCT+AGG | + | chr4.1:89190898-89190917 | MS.gene98141:intron | 45.0% | |
| ATCATCTTACACCAGCAGAG+AGG | + | chr4.1:89191673-89191692 | MS.gene98141:CDS | 45.0% | |
| ATCTGTTTCGGAGTTTGGAG+GGG | - | chr4.1:89191480-89191499 | None:intergenic | 45.0% | |
| CGCTCATGTTTGCGAGATAT+TGG | - | chr4.1:89191788-89191807 | None:intergenic | 45.0% | |
| GATCTGTTTCGGAGTTTGGA+GGG | - | chr4.1:89191481-89191500 | None:intergenic | 45.0% | |
| GGTGGTAAACTGAAGCTGAA+GGG | + | chr4.1:89190533-89190552 | MS.gene98141:CDS | 45.0% | |
| TGATGGGAGTGAATTGAGCA+GGG | + | chr4.1:89191626-89191645 | MS.gene98141:CDS | 45.0% | |
| TGGTGGTAAACTGAAGCTGA+AGG | + | chr4.1:89190532-89190551 | MS.gene98141:CDS | 45.0% | |
| TGTGTGTGTGTGTGTGTTCA+TGG | + | chr4.1:89190675-89190694 | MS.gene98141:intron | 45.0% | |
| ! | ATGATGGGAGTGAATTGAGC+AGG | + | chr4.1:89191625-89191644 | MS.gene98141:CDS | 45.0% |
| ! | GAAGCTGAAGGGAAAAGCAT+TGG | + | chr4.1:89190544-89190563 | MS.gene98141:CDS | 45.0% |
| ! | GGCAATGGGTTTCAGTAAAC+AGG | + | chr4.1:89191082-89191101 | MS.gene98141:intron | 45.0% |
| !! | AAAGCATTGGATGTTGCTGG+CGG | + | chr4.1:89190557-89190576 | MS.gene98141:CDS | 45.0% |
| !! | GGAAAAGCATTGGATGTTGC+TGG | + | chr4.1:89190554-89190573 | MS.gene98141:CDS | 45.0% |
| AGAGGCGGTACATAGAACAG+AGG | + | chr4.1:89191691-89191710 | MS.gene98141:CDS | 50.0% | |
| AGGGAATAGAGGACTTCGGA+AGG | - | chr4.1:89191414-89191433 | None:intergenic | 50.0% | |
| ATCTCACCGCGATAGAATCC+AGG | + | chr4.1:89191755-89191774 | MS.gene98141:CDS | 50.0% | |
| ATCTTACACCAGCAGAGAGG+CGG | + | chr4.1:89191676-89191695 | MS.gene98141:CDS | 50.0% | |
| CATTTCCTAAGGCTCCGTTC+GGG | + | chr4.1:89191156-89191175 | MS.gene98141:intron | 50.0% | |
| GAAAAGGAAGGAGGAAGTGG+AGG | - | chr4.1:89191434-89191453 | None:intergenic | 50.0% | |
| GAGGCGGTACATAGAACAGA+GGG | + | chr4.1:89191692-89191711 | MS.gene98141:CDS | 50.0% | |
| GGAATAGAGGACTTCGGAAG+GGG | - | chr4.1:89191412-89191431 | None:intergenic | 50.0% | |
| GGATCTGTTTCGGAGTTTGG+AGG | - | chr4.1:89191482-89191501 | None:intergenic | 50.0% | |
| GGGAATAGAGGACTTCGGAA+GGG | - | chr4.1:89191413-89191432 | None:intergenic | 50.0% | |
| GTGGAGGGAATAGAGGACTT+CGG | - | chr4.1:89191418-89191437 | None:intergenic | 50.0% | |
| TTTCGGAGTTTGGAGGGGAA+GGG | - | chr4.1:89191475-89191494 | None:intergenic | 50.0% | |
| !! | AATGGATGGCTTTGTGAGGG+AGG | + | chr4.1:89191195-89191214 | MS.gene98141:intron | 50.0% |
| !! | AGGGAATGGATGGCTTTGTG+AGG | + | chr4.1:89191191-89191210 | MS.gene98141:intron | 50.0% |
| !! | ATGGATGGCTTTGTGAGGGA+GGG | + | chr4.1:89191196-89191215 | MS.gene98141:intron | 50.0% |
| !! | GGGAATGGATGGCTTTGTGA+GGG | + | chr4.1:89191192-89191211 | MS.gene98141:intron | 50.0% |
| AAACTCCCGAACGGAGCCTT+AGG | - | chr4.1:89191164-89191183 | None:intergenic | 55.0% | |
| ATAGAGGACTTCGGAAGGGG+AGG | - | chr4.1:89191409-89191428 | None:intergenic | 55.0% | |
| GGAGGAAGTGGAGGGAATAG+AGG | - | chr4.1:89191425-89191444 | None:intergenic | 55.0% | |
| GTTTCGGAGTTTGGAGGGGA+AGG | - | chr4.1:89191476-89191495 | None:intergenic | 55.0% | |
| TAAGGCTCCGTTCGGGAGTT+TGG | + | chr4.1:89191163-89191182 | MS.gene98141:intron | 55.0% | |
| TAGAGGACTTCGGAAGGGGA+GGG | - | chr4.1:89191408-89191427 | None:intergenic | 55.0% | |
| TCTATGTACCGCCTCTCTGC+TGG | - | chr4.1:89191687-89191706 | None:intergenic | 55.0% | |
| TTTGGAGGGGAGGGAATGGA+TGG | + | chr4.1:89191181-89191200 | MS.gene98141:intron | 55.0% | |
| ! | GGCTTTGTGAGGGAGGGAAA+CGG | + | chr4.1:89191202-89191221 | MS.gene98141:intron | 55.0% |
| ACTTCGGAAGGGGAGGGCTT+TGG | - | chr4.1:89191402-89191421 | None:intergenic | 60.0% | |
| CTCCCCTCCAAACTCCCGAA+CGG | - | chr4.1:89191173-89191192 | None:intergenic | 60.0% | |
| CTCCGTTCGGGAGTTTGGAG+GGG | + | chr4.1:89191168-89191187 | MS.gene98141:intron | 60.0% | |
| CTTCGGAAGGGGAGGGCTTT+GGG | - | chr4.1:89191401-89191420 | None:intergenic | 60.0% | |
| GCTCCGTTCGGGAGTTTGGA+GGG | + | chr4.1:89191167-89191186 | MS.gene98141:intron | 60.0% | |
| GGAGTTTGGAGGGGAGGGAA+TGG | + | chr4.1:89191177-89191196 | MS.gene98141:intron | 60.0% | |
| GTTCGGGAGTTTGGAGGGGA+GGG | + | chr4.1:89191172-89191191 | MS.gene98141:intron | 60.0% | |
| TTCGGAAGGGGAGGGCTTTG+GGG | - | chr4.1:89191400-89191419 | None:intergenic | 60.0% | |
| CGGAGTTTGGAGGGGAAGGG+AGG | - | chr4.1:89191472-89191491 | None:intergenic | 65.0% | |
| CGTTCGGGAGTTTGGAGGGG+AGG | + | chr4.1:89191171-89191190 | MS.gene98141:intron | 65.0% | |
| GGCTCCGTTCGGGAGTTTGG+AGG | + | chr4.1:89191166-89191185 | MS.gene98141:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 89190509 | 89191842 | 89190509 | ID=MS.gene98141 |
| chr4.1 | mRNA | 89190509 | 89191842 | 89190509 | ID=MS.gene98141.t1;Parent=MS.gene98141 |
| chr4.1 | exon | 89190509 | 89190653 | 89190509 | ID=MS.gene98141.t1.exon1;Parent=MS.gene98141.t1 |
| chr4.1 | CDS | 89190509 | 89190653 | 89190509 | ID=cds.MS.gene98141.t1;Parent=MS.gene98141.t1 |
| chr4.1 | exon | 89191580 | 89191842 | 89191580 | ID=MS.gene98141.t1.exon2;Parent=MS.gene98141.t1 |
| chr4.1 | CDS | 89191580 | 89191842 | 89191580 | ID=cds.MS.gene98141.t1;Parent=MS.gene98141.t1 |
| Gene Sequence |
| Protein sequence |
