Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004442.01.T01 | GAU20550.1 | 94.488 | 127 | 7 | 0 | 1 | 127 | 1 | 127 | 7.19E-83 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004442.01.T01 | Q7SXW4 | 38.71 | 124 | 73 | 2 | 1 | 123 | 1 | 122 | 6.68E-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004442.01.T01 | A0A2Z6MDN8 | 94.488 | 127 | 7 | 0 | 1 | 127 | 1 | 127 | 3.43e-83 | 248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048197.01 | MsG0180004442.01 | 0.839202 | 1.824067e-57 | 2.500834e-54 |
| MsG0080048383.01 | MsG0180004442.01 | 0.807017 | 6.206345e-50 | 3.419180e-47 |
| MsG0180001043.01 | MsG0180004442.01 | 0.801111 | 1.050628e-48 | 4.976290e-46 |
| MsG0180001599.01 | MsG0180004442.01 | 0.828546 | 8.464494e-55 | 8.439918e-52 |
| MsG0180002283.01 | MsG0180004442.01 | 0.812328 | 4.479939e-51 | 2.840138e-48 |
| MsG0180002489.01 | MsG0180004442.01 | 0.813299 | 2.745544e-51 | 1.786158e-48 |
| MsG0180002491.01 | MsG0180004442.01 | 0.827509 | 1.504651e-54 | 1.455545e-51 |
| MsG0180003181.01 | MsG0180004442.01 | 0.837417 | 5.263566e-57 | 6.832474e-54 |
| MsG0180003190.01 | MsG0180004442.01 | 0.809035 | 2.308723e-50 | 1.340980e-47 |
| MsG0180003303.01 | MsG0180004442.01 | 0.820180 | 7.860668e-53 | 6.175725e-50 |
| MsG0180003744.01 | MsG0180004442.01 | 0.841975 | 3.429755e-58 | 5.124780e-55 |
| MsG0180004016.01 | MsG0180004442.01 | 0.869304 | 3.424012e-66 | 1.278682e-62 |
| MsG0180004437.01 | MsG0180004442.01 | 0.801670 | 8.071708e-49 | 3.877306e-46 |
| MsG0180004442.01 | MsG0180004444.01 | 0.830540 | 2.772646e-55 | 2.929749e-52 |
| MsG0180004442.01 | MsG0180004767.01 | 0.856639 | 2.809015e-62 | 6.748364e-59 |
| MsG0180004442.01 | MsG0180005125.01 | 0.804598 | 2.000635e-49 | 1.035774e-46 |
| MsG0180004442.01 | MsG0180005765.01 | 0.809294 | 2.031375e-50 | 1.188138e-47 |
| MsG0180004442.01 | MsG0280006682.01 | 0.807944 | 3.946088e-50 | 2.227071e-47 |
| MsG0180004442.01 | MsG0280006892.01 | 0.801025 | 1.093981e-48 | 5.170625e-46 |
| MsG0180004442.01 | MsG0280007948.01 | 0.816218 | 6.195024e-52 | 4.363489e-49 |
| MsG0180004442.01 | MsG0280008286.01 | 0.838943 | 2.129155e-57 | 2.895866e-54 |
| MsG0180004442.01 | MsG0280008518.01 | 0.806654 | 7.404631e-50 | 4.041053e-47 |
| MsG0180004442.01 | MsG0280009356.01 | 0.801408 | 9.134128e-49 | 4.358713e-46 |
| MsG0180004442.01 | MsG0380014541.01 | 0.804525 | 2.072072e-49 | 1.070703e-46 |
| MsG0180004442.01 | MsG0380014885.01 | 0.810728 | 9.979999e-51 | 6.062636e-48 |
| MsG0180004442.01 | MsG0380015607.01 | 0.847169 | 1.370972e-59 | 2.415948e-56 |
| MsG0180004442.01 | MsG0380015922.01 | 0.814988 | 1.163594e-51 | 7.924384e-49 |
| MsG0180004442.01 | MsG0380017476.01 | 0.819619 | 1.055882e-52 | 8.166123e-50 |
| MsG0180004442.01 | MsG0380017719.01 | 0.819281 | 1.260861e-52 | 9.660004e-50 |
| MsG0180004442.01 | MsG0480018332.01 | 0.811044 | 8.525062e-51 | 5.222638e-48 |
| MsG0180004442.01 | MsG0480018462.01 | 0.803594 | 3.235816e-49 | 1.632656e-46 |
| MsG0180004442.01 | MsG0480019642.01 | 0.824584 | 7.457480e-54 | 6.633902e-51 |
| MsG0180004442.01 | MsG0480020416.01 | 0.802313 | 5.952408e-49 | 2.906701e-46 |
| MsG0180004442.01 | MsG0480020843.01 | 0.805284 | 1.437728e-49 | 7.576035e-47 |
| MsG0180004442.01 | MsG0480021034.01 | 0.822503 | 2.287258e-53 | 1.918053e-50 |
| MsG0180004442.01 | MsG0480021240.01 | 0.812158 | 4.879532e-51 | 3.079231e-48 |
| MsG0180004442.01 | MsG0480021832.01 | 0.838548 | 2.694237e-57 | 3.620747e-54 |
| MsG0180004442.01 | MsG0480022183.01 | 0.829798 | 4.207061e-55 | 4.352043e-52 |
| MsG0180004442.01 | MsG0480022678.01 | 0.833124 | 6.383939e-56 | 7.284017e-53 |
| MsG0180004442.01 | MsG0480023240.01 | 0.820774 | 5.741680e-53 | 4.585644e-50 |
| MsG0180004442.01 | MsG0480023447.01 | 0.801944 | 7.089173e-49 | 3.429078e-46 |
| MsG0180004442.01 | MsG0480023559.01 | 0.815059 | 1.122404e-51 | 7.658255e-49 |
| MsG0180004442.01 | MsG0580025134.01 | 0.813588 | 2.372631e-51 | 1.555745e-48 |
| MsG0180004442.01 | MsG0580025414.01 | 0.821653 | 3.600556e-53 | 2.946989e-50 |
| MsG0180004442.01 | MsG0580028185.01 | 0.805529 | 1.277795e-49 | 6.775769e-47 |
| MsG0180004442.01 | MsG0580029658.01 | 0.829860 | 4.063942e-55 | 4.211535e-52 |
| MsG0180004442.01 | MsG0580029801.01 | 0.825815 | 3.816362e-54 | 3.516259e-51 |
| MsG0180004442.01 | MsG0580030204.01 | 0.800517 | 1.388680e-48 | 6.479028e-46 |
| MsG0180004442.01 | MsG0680030408.01 | 0.841036 | 6.059916e-58 | 8.793022e-55 |
| MsG0180004442.01 | MsG0680030841.01 | 0.801410 | 9.124359e-49 | 4.354289e-46 |
| MsG0180004442.01 | MsG0680031536.01 | 0.808595 | 2.867580e-50 | 1.646296e-47 |
| MsG0180004442.01 | MsG0680031828.01 | 0.834789 | 2.445483e-56 | 2.932426e-53 |
| MsG0180004442.01 | MsG0680034061.01 | 0.818905 | 1.535546e-52 | 1.164430e-49 |
| MsG0180004442.01 | MsG0680035306.01 | 0.801357 | 9.353736e-49 | 4.457966e-46 |
| MsG0180004442.01 | MsG0780036853.01 | 0.821075 | 4.895181e-53 | 3.942868e-50 |
| MsG0180004442.01 | MsG0780039340.01 | 0.813578 | 2.384178e-51 | 1.562931e-48 |
| MsG0180004442.01 | MsG0780039452.01 | 0.802559 | 5.296488e-49 | 2.602415e-46 |
| MsG0180004442.01 | MsG0780039570.01 | 0.810843 | 9.420250e-51 | 5.740313e-48 |
| MsG0180004442.01 | MsG0780039587.01 | 0.825828 | 3.787744e-54 | 3.491126e-51 |
| MsG0180004442.01 | MsG0780039943.01 | 0.837320 | 5.573332e-57 | 7.212825e-54 |
| MsG0180004442.01 | MsG0780040125.01 | 0.810095 | 1.366505e-50 | 8.163380e-48 |
| MsG0180004442.01 | MsG0780040312.01 | 0.802386 | 5.749745e-49 | 2.812937e-46 |
| MsG0180004442.01 | MsG0780040411.01 | 0.800265 | 1.562610e-48 | 7.244293e-46 |
| MsG0180004442.01 | MsG0780040742.01 | 0.803330 | 3.671160e-49 | 1.839639e-46 |
| MsG0180004442.01 | MsG0780040845.01 | 0.809312 | 2.013765e-50 | 1.178367e-47 |
| MsG0180004442.01 | MsG0780041490.01 | 0.817871 | 2.633327e-52 | 1.940634e-49 |
| MsG0180004442.01 | MsG0880045619.01 | 0.813005 | 3.186378e-51 | 2.056486e-48 |
| MsG0180004442.01 | MsG0880045631.01 | 0.812387 | 4.349720e-51 | 2.761898e-48 |
| MsG0180004442.01 | MsG0880045656.01 | 0.812337 | 4.459951e-51 | 2.828197e-48 |
| MsG0180004442.01 | MsG0880045951.01 | 0.811592 | 6.483252e-51 | 4.029307e-48 |
| MsG0180004442.01 | MsG0880046047.01 | 0.809230 | 2.096822e-50 | 1.224344e-47 |
| MsG0180004442.01 | MsG0880046068.01 | 0.860467 | 2.023777e-63 | 5.537723e-60 |
| MsG0180004442.01 | MsG0880046113.01 | 0.806866 | 6.680369e-50 | 3.666062e-47 |
| MsG0180004442.01 | MsG0880046177.01 | 0.808196 | 3.487698e-50 | 1.981608e-47 |
| MsG0180004442.01 | MsG0880046317.01 | 0.809687 | 1.672734e-50 | 9.886579e-48 |
| MsG0180004442.01 | MsG0880046342.01 | 0.823113 | 1.649569e-53 | 1.407438e-50 |
| MsG0180004442.01 | MsG0880047428.01 | 0.807273 | 5.477363e-50 | 3.037857e-47 |
| MsG0180004442.01 | MsG0880047590.01 | 0.809549 | 1.791401e-50 | 1.054901e-47 |
| MsG0180004442.01 | MsG0880047607.01 | 0.840138 | 1.041246e-57 | 1.469578e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004442.01.T01 | MTR_1g079890 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 7.37e-86 | 250 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004442.01.T01 | AT4G12590 | 79.675 | 123 | 25 | 0 | 1 | 123 | 1 | 123 | 1.34e-69 | 209 |
Find 35 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGTTGTTATGGTTCTTAT+TGG | 0.227769 | 1:+78025463 | MsG0180004442.01.T01:CDS |
| TATCCCTTTATCCGTTGTTA+TGG | 0.332373 | 1:+78025453 | MsG0180004442.01.T01:CDS |
| AGAACCATAACAACGGATAA+AGG | 0.351939 | 1:-78025457 | None:intergenic |
| TAGAATAATGGCGGAAGATC+TGG | 0.378579 | 1:+78025399 | MsG0180004442.01.T01:exon |
| TGGATACTGCAATCAGAGAT+TGG | 0.384123 | 1:+78025425 | MsG0180004442.01.T01:CDS |
| CGGGCACGAAAAGCCTTAGA+AGG | 0.386182 | 1:-78025696 | None:intergenic |
| GGATTCGTGGCTTGGCCCTT+TGG | 0.388165 | 1:-78026031 | None:intergenic |
| CTATCGAAAGACGAGGTTGC+CGG | 0.390954 | 1:+78025142 | MsG0180004442.01.T01:five_prime_UTR |
| AATGGCGGAAGATCTGGTTT+TGG | 0.395876 | 1:+78025405 | MsG0180004442.01.T01:exon |
| GTGCTTGTGGATTCGTGGCT+TGG | 0.403806 | 1:-78026039 | None:intergenic |
| GAACCATAACAACGGATAAA+GGG | 0.432462 | 1:-78025456 | None:intergenic |
| GGATACTGCAATCAGAGATT+GGG | 0.436107 | 1:+78025426 | MsG0180004442.01.T01:CDS |
| ATCATATCCATGGCCATGTT+CGG | 0.446386 | 1:-78026076 | None:intergenic |
| TCTTTCAATGATTATACCTC+AGG | 0.457257 | 1:+78026108 | MsG0180004442.01.T01:CDS |
| ATTACAATAATAAAGCTTGC+GGG | 0.463442 | 1:-78025715 | None:intergenic |
| TCAGAGAACATTTGTGCTTG+TGG | 0.484350 | 1:-78026052 | None:intergenic |
| CATTTGTGCTTGTGGATTCG+TGG | 0.484951 | 1:-78026044 | None:intergenic |
| TTGGGAAGAACGCAGAAGCT+TGG | 0.489162 | 1:-78025506 | None:intergenic |
| CAAGCTTTATTATTGTAATG+AGG | 0.490585 | 1:+78025719 | MsG0180004442.01.T01:CDS |
| AGAGAAACAAGATCGAGAAC+TGG | 0.497129 | 1:-78025185 | None:intergenic |
| TGGTCTGTTATTCGTTCCAA+AGG | 0.520176 | 1:+78026015 | MsG0180004442.01.T01:CDS |
| CTCTGATCCGAACATGGCCA+TGG | 0.554603 | 1:+78026069 | MsG0180004442.01.T01:CDS |
| GATATCAAAATTGTCAGAGA+AGG | 0.558054 | 1:+78025535 | MsG0180004442.01.T01:CDS |
| GGTCTGTTATTCGTTCCAAA+GGG | 0.570620 | 1:+78026016 | MsG0180004442.01.T01:CDS |
| GATCGATTGTGAGACACAGC+CGG | 0.576208 | 1:-78025161 | None:intergenic |
| CATTACAATAATAAAGCTTG+CGG | 0.576893 | 1:-78025716 | None:intergenic |
| GGCAAGTTATGCTTAGAGCT+CGG | 0.581999 | 1:+78025646 | MsG0180004442.01.T01:intron |
| ATATCAAAATTGTCAGAGAA+GGG | 0.586701 | 1:+78025536 | MsG0180004442.01.T01:CDS |
| AATGTTCTCTGATCCGAACA+TGG | 0.607119 | 1:+78026063 | MsG0180004442.01.T01:CDS |
| ACCAATAAGAACCATAACAA+CGG | 0.636744 | 1:-78025464 | None:intergenic |
| CCACGATGTAGAATCTGATG+AGG | 0.642648 | 1:-78025244 | None:intergenic |
| GGGCACGAAAAGCCTTAGAA+GGG | 0.660230 | 1:-78025695 | None:intergenic |
| TGTTAAACTATCGAAAGACG+AGG | 0.674238 | 1:+78025135 | MsG0180004442.01.T01:five_prime_UTR |
| TAATCTATTCTGAACACCTG+AGG | 0.692763 | 1:-78026124 | None:intergenic |
| CCTCATCAGATTCTACATCG+TGG | 0.717446 | 1:+78025244 | MsG0180004442.01.T01:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTATGTTTCTTATTT+AGG | + | Chr1:78025771-78025790 | MsG0180004442.01.T01:intron | 10.0% |
| !! | TATTTAGGAAAAAAATGTAA+TGG | + | Chr1:78025786-78025805 | MsG0180004442.01.T01:intron | 15.0% |
| !!! | ATTGTGTATTATTTTAGATT+TGG | - | Chr1:78025317-78025336 | None:intergenic | 15.0% |
| !!! | TTGTGTATTATTTTAGATTT+GGG | - | Chr1:78025316-78025335 | None:intergenic | 15.0% |
| !!! | TTTGTTAGATTTTAGAATAA+TGG | + | Chr1:78025387-78025406 | MsG0180004442.01.T01:exon | 15.0% |
| !!! | TTTTTAATTTGATTATGTTG+TGG | + | Chr1:78025613-78025632 | MsG0180004442.01.T01:intron | 15.0% |
| !! | AATTAACAACTTATTGTTTG+AGG | + | Chr1:78025825-78025844 | MsG0180004442.01.T01:intron | 20.0% |
| !! | TGAAATTGAAATTAGAAACA+AGG | - | Chr1:78025284-78025303 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCAGTAAAACAAA+AGG | + | Chr1:78025066-78025085 | MsG0180004442.01.T01:five_prime_UTR | 20.0% |
| !!! | CAATTTTTGTTAAAGGAAAA+TGG | + | Chr1:78025995-78026014 | MsG0180004442.01.T01:intron | 20.0% |
| !!! | TGTTTGTCAATTTTTGTTAA+AGG | + | Chr1:78025988-78026007 | MsG0180004442.01.T01:intron | 20.0% |
| !!! | TTTTATTCTAGTTTGATAGA+AGG | + | Chr1:78025746-78025765 | MsG0180004442.01.T01:intron | 20.0% |
| ! | ATATCAAAATTGTCAGAGAA+GGG | + | Chr1:78025536-78025555 | MsG0180004442.01.T01:CDS | 25.0% |
| ! | ATTACAATAATAAAGCTTGC+GGG | - | Chr1:78025718-78025737 | None:intergenic | 25.0% |
| ! | CATTACAATAATAAAGCTTG+CGG | - | Chr1:78025719-78025738 | None:intergenic | 25.0% |
| !! | ATTTTTCTTCATCATATCCA+TGG | - | Chr1:78026089-78026108 | None:intergenic | 25.0% |
| !!! | AATTTTGATATCAGGAGTTT+GGG | - | Chr1:78025527-78025546 | None:intergenic | 25.0% |
| !!! | AGAAAACCTTTAAAACTCAT+CGG | + | Chr1:78025876-78025895 | MsG0180004442.01.T01:intron | 25.0% |
| !!! | CAAGCTTTATTATTGTAATG+AGG | + | Chr1:78025719-78025738 | MsG0180004442.01.T01:CDS | 25.0% |
| !!! | GTTAGATTTTAGAATAATGG+CGG | + | Chr1:78025390-78025409 | MsG0180004442.01.T01:exon | 25.0% |
| !!! | TTATGTTGTGGTTTTAATAC+AGG | + | Chr1:78025625-78025644 | MsG0180004442.01.T01:intron | 25.0% |
| ACCAATAAGAACCATAACAA+CGG | - | Chr1:78025467-78025486 | None:intergenic | 30.0% | |
| CATTTGTCTAACCAATTCAA+CGG | + | Chr1:78025956-78025975 | MsG0180004442.01.T01:intron | 30.0% | |
| GATATCAAAATTGTCAGAGA+AGG | + | Chr1:78025535-78025554 | MsG0180004442.01.T01:CDS | 30.0% | |
| TCTTTCAATGATTATACCTC+AGG | + | Chr1:78026108-78026127 | MsG0180004442.01.T01:CDS | 30.0% | |
| ! | AAATGTAATGGCTTTTGTTG+TGG | + | Chr1:78025798-78025817 | MsG0180004442.01.T01:intron | 30.0% |
| ! | AGCTAATTTTATCCCTTCTA+AGG | + | Chr1:78025683-78025702 | MsG0180004442.01.T01:CDS | 30.0% |
| !! | AATGTAATGGCTTTTGTTGT+GGG | + | Chr1:78025799-78025818 | MsG0180004442.01.T01:intron | 30.0% |
| !! | CAATTTTGATATCAGGAGTT+TGG | - | Chr1:78025528-78025547 | None:intergenic | 30.0% |
| !! | TAACTTCCGATGAGTTTTAA+AGG | - | Chr1:78025885-78025904 | None:intergenic | 30.0% |
| !! | TCTCTGACAATTTTGATATC+AGG | - | Chr1:78025535-78025554 | None:intergenic | 30.0% |
| AGAACCATAACAACGGATAA+AGG | - | Chr1:78025460-78025479 | None:intergenic | 35.0% | |
| AGGTGTTCAGAATAGATTAG+GGG | + | Chr1:78026128-78026147 | MsG0180004442.01.T01:CDS | 35.0% | |
| CAATTAGTTCACCGTTGAAT+TGG | - | Chr1:78025970-78025989 | None:intergenic | 35.0% | |
| CAGGTGTTCAGAATAGATTA+GGG | + | Chr1:78026127-78026146 | MsG0180004442.01.T01:CDS | 35.0% | |
| GAACCATAACAACGGATAAA+GGG | - | Chr1:78025459-78025478 | None:intergenic | 35.0% | |
| TAATCTATTCTGAACACCTG+AGG | - | Chr1:78026127-78026146 | None:intergenic | 35.0% | |
| TATCCCTTTATCCGTTGTTA+TGG | + | Chr1:78025453-78025472 | MsG0180004442.01.T01:CDS | 35.0% | |
| TCAGGTGTTCAGAATAGATT+AGG | + | Chr1:78026126-78026145 | MsG0180004442.01.T01:CDS | 35.0% | |
| TCCGTTGTTATGGTTCTTAT+TGG | + | Chr1:78025463-78025482 | MsG0180004442.01.T01:CDS | 35.0% | |
| TGTTAAACTATCGAAAGACG+AGG | + | Chr1:78025135-78025154 | MsG0180004442.01.T01:five_prime_UTR | 35.0% | |
| AATGTTCTCTGATCCGAACA+TGG | + | Chr1:78026063-78026082 | MsG0180004442.01.T01:CDS | 40.0% | |
| AGAGAAACAAGATCGAGAAC+TGG | - | Chr1:78025188-78025207 | None:intergenic | 40.0% | |
| ATCATATCCATGGCCATGTT+CGG | - | Chr1:78026079-78026098 | None:intergenic | 40.0% | |
| GGATACTGCAATCAGAGATT+GGG | + | Chr1:78025426-78025445 | MsG0180004442.01.T01:CDS | 40.0% | |
| GGTCTGTTATTCGTTCCAAA+GGG | + | Chr1:78026016-78026035 | MsG0180004442.01.T01:CDS | 40.0% | |
| TAACTCTATGACTCTGTCAC+AGG | + | Chr1:78025906-78025925 | MsG0180004442.01.T01:intron | 40.0% | |
| TCAGAGAACATTTGTGCTTG+TGG | - | Chr1:78026055-78026074 | None:intergenic | 40.0% | |
| TGGATACTGCAATCAGAGAT+TGG | + | Chr1:78025425-78025444 | MsG0180004442.01.T01:CDS | 40.0% | |
| TGGTCTGTTATTCGTTCCAA+AGG | + | Chr1:78026015-78026034 | MsG0180004442.01.T01:CDS | 40.0% | |
| ! | TAGAATAATGGCGGAAGATC+TGG | + | Chr1:78025399-78025418 | MsG0180004442.01.T01:exon | 40.0% |
| CATTTGTGCTTGTGGATTCG+TGG | - | Chr1:78026047-78026066 | None:intergenic | 45.0% | |
| CCACGATGTAGAATCTGATG+AGG | - | Chr1:78025247-78025266 | None:intergenic | 45.0% | |
| CCTCATCAGATTCTACATCG+TGG | + | Chr1:78025244-78025263 | MsG0180004442.01.T01:five_prime_UTR | 45.0% | |
| GGCAAGTTATGCTTAGAGCT+CGG | + | Chr1:78025646-78025665 | MsG0180004442.01.T01:intron | 45.0% | |
| !! | AATGGCGGAAGATCTGGTTT+TGG | + | Chr1:78025405-78025424 | MsG0180004442.01.T01:exon | 45.0% |
| CTATCGAAAGACGAGGTTGC+CGG | + | Chr1:78025142-78025161 | MsG0180004442.01.T01:five_prime_UTR | 50.0% | |
| GATCGATTGTGAGACACAGC+CGG | - | Chr1:78025164-78025183 | None:intergenic | 50.0% | |
| GGGCACGAAAAGCCTTAGAA+GGG | - | Chr1:78025698-78025717 | None:intergenic | 50.0% | |
| TTGGGAAGAACGCAGAAGCT+TGG | - | Chr1:78025509-78025528 | None:intergenic | 50.0% | |
| CGGGCACGAAAAGCCTTAGA+AGG | - | Chr1:78025699-78025718 | None:intergenic | 55.0% | |
| CTCTGATCCGAACATGGCCA+TGG | + | Chr1:78026069-78026088 | MsG0180004442.01.T01:CDS | 55.0% | |
| GTGCTTGTGGATTCGTGGCT+TGG | - | Chr1:78026042-78026061 | None:intergenic | 55.0% | |
| ! | GGATTCGTGGCTTGGCCCTT+TGG | - | Chr1:78026034-78026053 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 78025058 | 78026147 | 78025058 | ID=MsG0180004442.01;Name=MsG0180004442.01 |
| Chr1 | mRNA | 78025058 | 78026147 | 78025058 | ID=MsG0180004442.01.T01;Parent=MsG0180004442.01;Name=MsG0180004442.01.T01;_AED=0.44;_eAED=0.46;_QI=227|1|0.75|1|0.66|0.5|4|0|127 |
| Chr1 | exon | 78025058 | 78025265 | 78025058 | ID=MsG0180004442.01.T01:exon:12828;Parent=MsG0180004442.01.T01 |
| Chr1 | exon | 78025387 | 78025557 | 78025387 | ID=MsG0180004442.01.T01:exon:12829;Parent=MsG0180004442.01.T01 |
| Chr1 | exon | 78025647 | 78025740 | 78025647 | ID=MsG0180004442.01.T01:exon:12830;Parent=MsG0180004442.01.T01 |
| Chr1 | exon | 78026010 | 78026147 | 78026010 | ID=MsG0180004442.01.T01:exon:12831;Parent=MsG0180004442.01.T01 |
| Chr1 | five_prime_UTR | 78025058 | 78025265 | 78025058 | ID=MsG0180004442.01.T01:five_prime_utr;Parent=MsG0180004442.01.T01 |
| Chr1 | five_prime_UTR | 78025387 | 78025405 | 78025387 | ID=MsG0180004442.01.T01:five_prime_utr;Parent=MsG0180004442.01.T01 |
| Chr1 | CDS | 78025406 | 78025557 | 78025406 | ID=MsG0180004442.01.T01:cds;Parent=MsG0180004442.01.T01 |
| Chr1 | CDS | 78025647 | 78025740 | 78025647 | ID=MsG0180004442.01.T01:cds;Parent=MsG0180004442.01.T01 |
| Chr1 | CDS | 78026010 | 78026147 | 78026010 | ID=MsG0180004442.01.T01:cds;Parent=MsG0180004442.01.T01 |
| Gene Sequence |
| Protein sequence |
