AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006937.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006937.01.T01 MTR_2g018030 95.455 66 3 0 242 307 286 351 5.19e-36 133
MsG0280006937.01.T01 MTR_2g018030 52.055 73 30 2 212 284 40 107 4.19e-12 66.6
MsG0280006937.01.T01 MTR_8g087530 69.841 63 19 0 245 307 270 332 7.98e-22 94.4
MsG0280006937.01.T01 MTR_4g028930 61.404 57 22 0 245 301 326 382 8.90e-20 89.4
MsG0280006937.01.T01 MTR_7g072875 61.538 52 20 0 247 298 233 284 3.68e-18 83.6
MsG0280006937.01.T01 MTR_7g072630 61.538 52 20 0 247 298 295 346 7.94e-18 83.2
MsG0280006937.01.T01 MTR_5g075210 53.571 56 26 0 247 302 294 349 2.47e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006937.01.T01 AT2G30400 61.818 55 21 0 245 299 264 318 2.66e-17 81.6
MsG0280006937.01.T01 AT1G06920 63.462 52 19 0 246 297 256 307 4.09e-16 78.2
MsG0280006937.01.T01 AT5G01840 58.491 53 22 0 245 297 210 262 6.43e-16 77.0
MsG0280006937.01.T01 AT5G58360 50.847 59 28 1 246 304 237 294 5.00e-15 74.7
MsG0280006937.01.T01 AT4G18830 65.385 52 18 0 245 296 294 345 2.20e-14 73.6

Find 47 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGTCTTCAATTCAGATTC+AGG 0.189949 2:-8229652 None:intergenic
TAGAGCTTCTGCACAACTTC+TGG 0.233531 2:+8229422 MsG0280006937.01.T01:CDS
AACGAACCAAAAGTGTTTCT+TGG 0.278028 2:-8230038 None:intergenic
TGGTTTGATATGAGTCAATA+TGG 0.296873 2:+8234024 MsG0280006937.01.T01:CDS
AGTTAGTTAACTACTCTAAT+TGG 0.302901 2:-8234095 None:intergenic
TTTGATATTGGTGGAAAATA+TGG 0.307283 2:+8233211 MsG0280006937.01.T01:CDS
GATATGAGTCAATATGGTTT+AGG 0.337600 2:+8234030 MsG0280006937.01.T01:CDS
AGATTGTGTAACGTTGTTTA+CGG 0.350552 2:+8229733 MsG0280006937.01.T01:CDS
TAATTGGTAATTATCATTCA+TGG 0.367760 2:-8234079 None:intergenic
GATTAGTAAGGCAGAAGAAA+TGG 0.373351 2:+8233924 MsG0280006937.01.T01:CDS
TATCCACCACAAAACGGAAT+TGG 0.383730 2:-8229941 None:intergenic
AAATCGAAGTTGTTTGTTGA+TGG 0.387897 2:-8229824 None:intergenic
ATCTCATAATCAAAGTATTT+AGG 0.389618 2:+8233995 MsG0280006937.01.T01:CDS
GAGAAAGTTTCACCGGAATC+AGG 0.410114 2:-8229987 None:intergenic
AGGGAGGCATATCCTGATTC+CGG 0.432767 2:+8229975 MsG0280006937.01.T01:CDS
GTCATGCCAAGAAACACTTT+TGG 0.434555 2:+8230032 MsG0280006937.01.T01:CDS
GGAAAATATGGTAACAAAAG+TGG 0.450154 2:+8233223 MsG0280006937.01.T01:CDS
TAACAAAAGTGGAAGAAAAC+AGG 0.450359 2:+8233234 MsG0280006937.01.T01:CDS
TCAAAGTATTTAGGCAGGTA+TGG 0.455774 2:+8234004 MsG0280006937.01.T01:CDS
AGAAGAAATGGAAGAGTTGT+TGG 0.458484 2:+8233936 MsG0280006937.01.T01:CDS
TCTTGGCATGACAGTGACTT+TGG 0.474572 2:-8230021 None:intergenic
ATGATTGATTCGTCATGTAA+TGG 0.487309 2:-8229849 None:intergenic
TCGTCGGAGAACTGTGTAAA+CGG 0.494657 2:-8229916 None:intergenic
TGAAGAGAAACAGATTAGTA+AGG 0.497006 2:+8233912 MsG0280006937.01.T01:CDS
TTCGATCCCGGCGAAAGAGT+TGG 0.498034 2:+8229876 MsG0280006937.01.T01:CDS
ACACGAACCAACTCTTTCGC+CGG 0.507560 2:-8229883 None:intergenic
TTTCGTCAACTCTGAACCGC+TGG 0.526407 2:+8229684 MsG0280006937.01.T01:CDS
CACGAACCAACTCTTTCGCC+GGG 0.535578 2:-8229882 None:intergenic
TCAATCATCAATTTCGATCC+CGG 0.536929 2:+8229864 MsG0280006937.01.T01:CDS
CATAATCAAAGTATTTAGGC+AGG 0.542446 2:+8233999 MsG0280006937.01.T01:CDS
CCACCAATATCAAAACATGA+AGG 0.542576 2:-8233202 None:intergenic
TTATGTTCCTCATCATCTTG+TGG 0.542856 2:-8229625 None:intergenic
TGGTGGATACCTTGGGATCG+AGG 0.544356 2:+8229955 MsG0280006937.01.T01:CDS
TTGTGAAGAGAAAGTTTCAC+CGG 0.544783 2:-8229994 None:intergenic
CCAAGGTATCCACCACAAAA+CGG 0.549204 2:-8229947 None:intergenic
GGTGGATACCTTGGGATCGA+GGG 0.556991 2:+8229956 MsG0280006937.01.T01:CDS
ATATGCCTCCCTCGATCCCA+AGG 0.582186 2:-8229964 None:intergenic
GAGAATCCGTGTTGATGAAG+TGG 0.600927 2:+8229398 MsG0280006937.01.T01:CDS
GGATACCTTGGGATCGAGGG+AGG 0.609429 2:+8229959 MsG0280006937.01.T01:CDS
TGCTACTCCACAAGATGATG+AGG 0.614325 2:+8229618 MsG0280006937.01.T01:CDS
CAAAACGGAATTGGATTCGT+CGG 0.616045 2:-8229932 None:intergenic
CCAATATCAAAACATGAAGG+TGG 0.616765 2:-8233199 None:intergenic
CTCTAACCACTTCATCAACA+CGG 0.621639 2:-8229404 None:intergenic
AACAACGTTACACAATCTCA+CGG 0.630718 2:-8229728 None:intergenic
AATGATTTGATTGTGCGAAG+CGG 0.631824 2:-8229451 None:intergenic
ATTATGACGAGAACTTCCAG+CGG 0.726290 2:-8229700 None:intergenic
TGTTAGATCAGAATGCAATG+CGG 0.752292 2:+8234053 MsG0280006937.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATAAAGTAATAAGT+TGG + Chr2:8232669-8232688 MsG0280006937.01.T01:intron 10.0%
!! AAAAGGAATATGAAAATATA+AGG + Chr2:8233362-8233381 MsG0280006937.01.T01:intron 15.0%
!! GAAATGAATATATTGAAAAA+AGG - Chr2:8230894-8230913 None:intergenic 15.0%
!! TCAAACTAATCTTTATATAT+AGG + Chr2:8230847-8230866 MsG0280006937.01.T01:intron 15.0%
!!! GTTTTTTATTGTTGTTTTTT+TGG - Chr2:8232114-8232133 None:intergenic 15.0%
!! AATTATTGTGTCAATTTCTT+TGG - Chr2:8232272-8232291 None:intergenic 20.0%
!! ACACTCACAAAAATATTTAT+CGG - Chr2:8231192-8231211 None:intergenic 20.0%
!! ATAAAGAAATTAGCGATTTA+AGG + Chr2:8231156-8231175 MsG0280006937.01.T01:intron 20.0%
!! ATTATTGTGTCAATTTCTTT+GGG - Chr2:8232271-8232290 None:intergenic 20.0%
!! CAAACTTCCTAAAATATTTA+CGG - Chr2:8232047-8232066 None:intergenic 20.0%
!! CAACAATAAAAAACAAATGT+TGG + Chr2:8232120-8232139 MsG0280006937.01.T01:intron 20.0%
!! TATAAGAACTAAGTAAAACA+AGG - Chr2:8230621-8230640 None:intergenic 20.0%
!! TATCAAAGACAAAAAACAAT+AGG + Chr2:8232850-8232869 MsG0280006937.01.T01:intron 20.0%
!! TTAATTAACTTACATAGACT+TGG - Chr2:8232642-8232661 None:intergenic 20.0%
!!! ATCTCATAATCAAAGTATTT+AGG + Chr2:8233995-8234014 MsG0280006937.01.T01:CDS 20.0%
!!! CCTTAGCATAATTTTTATTA+CGG + Chr2:8231562-8231581 MsG0280006937.01.T01:intron 20.0%
!!! CTTAGCATAATTTTTATTAC+GGG + Chr2:8231563-8231582 MsG0280006937.01.T01:intron 20.0%
!!! GATTAGATGGATTATTTTTT+AGG - Chr2:8232472-8232491 None:intergenic 20.0%
!!! TAATTGGTAATTATCATTCA+TGG - Chr2:8234082-8234101 None:intergenic 20.0%
!!! TATTAGTTTGATAGATTAGA+TGG - Chr2:8232485-8232504 None:intergenic 20.0%
!!! TGTTTTGTAAATGTTAGATT+TGG - Chr2:8232980-8232999 None:intergenic 20.0%
!!! TTTTTTACCTTTGCAAAATT+AGG + Chr2:8231645-8231664 MsG0280006937.01.T01:intron 20.0%
! AAAGATGAAGAAAGAAATTG+TGG + Chr2:8233790-8233809 MsG0280006937.01.T01:intron 25.0%
! AACAAAATAATGATGAAGTG+GGG + Chr2:8233025-8233044 MsG0280006937.01.T01:intron 25.0%
! AAGTTATGTGTAGTTAGTTA+AGG + Chr2:8230734-8230753 MsG0280006937.01.T01:intron 25.0%
! ACAACAAAATAATGATGAAG+TGG + Chr2:8233023-8233042 MsG0280006937.01.T01:intron 25.0%
! ACAGTGGACAAATAATTTAT+AGG - Chr2:8232222-8232241 None:intergenic 25.0%
! AGTGGACAAATAATTTATAG+GGG - Chr2:8232220-8232239 None:intergenic 25.0%
! ATTGTATTCCAAACTCAAAT+TGG + Chr2:8230665-8230684 MsG0280006937.01.T01:intron 25.0%
! ATTTCTTTGGGTATTAACTT+TGG - Chr2:8232259-8232278 None:intergenic 25.0%
! CAACAAAATAATGATGAAGT+GGG + Chr2:8233024-8233043 MsG0280006937.01.T01:intron 25.0%
! CAATTACAAGTGACTTTAAA+CGG + Chr2:8232381-8232400 MsG0280006937.01.T01:intron 25.0%
! CAGTGGACAAATAATTTATA+GGG - Chr2:8232221-8232240 None:intergenic 25.0%
! CCGTAATAAAAATTATGCTA+AGG - Chr2:8231565-8231584 None:intergenic 25.0%
! GAAACCATTATAAAATCCAA+AGG + Chr2:8232191-8232210 MsG0280006937.01.T01:intron 25.0%
! GTATATGAGAGAAAATGAAA+CGG - Chr2:8232617-8232636 None:intergenic 25.0%
! GTATGAATATGATAGAGAAA+AGG + Chr2:8233345-8233364 MsG0280006937.01.T01:intron 25.0%
! TAAAAAACTGTTCTTGTAGA+GGG - Chr2:8231632-8231651 None:intergenic 25.0%
! TAAAATAAACAAGCTAACCA+GGG + Chr2:8231744-8231763 MsG0280006937.01.T01:intron 25.0%
! TAAAGACTCAAGAAAAACAA+AGG + Chr2:8233660-8233679 MsG0280006937.01.T01:intron 25.0%
! TACTAGATTGTGTAAAGAAA+GGG - Chr2:8232936-8232955 None:intergenic 25.0%
! TCACAAAAATATTTATCGGT+TGG - Chr2:8231188-8231207 None:intergenic 25.0%
! TGAAATATATTCACCAAGAT+TGG + Chr2:8233708-8233727 MsG0280006937.01.T01:intron 25.0%
! TGAGAGTGATGAATAATTTA+GGG + Chr2:8231228-8231247 MsG0280006937.01.T01:intron 25.0%
! TTAAAAGAGGAGGATATTAT+TGG + Chr2:8233267-8233286 MsG0280006937.01.T01:intron 25.0%
! TTAAAATAAACAAGCTAACC+AGG + Chr2:8231743-8231762 MsG0280006937.01.T01:intron 25.0%
! TTACTAGATTGTGTAAAGAA+AGG - Chr2:8232937-8232956 None:intergenic 25.0%
! TTTGATATTGGTGGAAAATA+TGG + Chr2:8233211-8233230 MsG0280006937.01.T01:CDS 25.0%
!! ATGGATAATCCATCAAATTT+TGG - Chr2:8229528-8229547 None:intergenic 25.0%
!! GTTTCCTTTGGATTTTATAA+TGG - Chr2:8232198-8232217 None:intergenic 25.0%
!! TAAGTCACCGTAAATATTTT+AGG + Chr2:8232037-8232056 MsG0280006937.01.T01:intron 25.0%
!! TATTAACTTTGGTGATAAAG+AGG - Chr2:8232248-8232267 None:intergenic 25.0%
!! TCTCAGATAAACGATATTTT+GGG + Chr2:8231261-8231280 MsG0280006937.01.T01:intron 25.0%
!! TGGATTTTATAATGGTTTCT+AGG - Chr2:8232190-8232209 None:intergenic 25.0%
!! TTCTCAGATAAACGATATTT+TGG + Chr2:8231260-8231279 MsG0280006937.01.T01:intron 25.0%
!!! AAATATTTTTGTGAGTGTCT+TGG + Chr2:8231194-8231213 MsG0280006937.01.T01:intron 25.0%
!!! AATATTTTTGTGAGTGTCTT+GGG + Chr2:8231195-8231214 MsG0280006937.01.T01:intron 25.0%
!!! ATTTTGATATTTCGTCAAAG+AGG + Chr2:8231335-8231354 MsG0280006937.01.T01:intron 25.0%
!!! CGTAAATATTTTAGGAAGTT+TGG + Chr2:8232045-8232064 MsG0280006937.01.T01:intron 25.0%
!!! TAAAAGCATTAGAAGAAATG+AGG + Chr2:8233755-8233774 MsG0280006937.01.T01:intron 25.0%
!!! TTGTACTTCGATTGTTTTTT+CGG + Chr2:8231709-8231728 MsG0280006937.01.T01:intron 25.0%
AAAATAAACAAGCTAACCAG+GGG + Chr2:8231745-8231764 MsG0280006937.01.T01:intron 30.0%
AAATAGCATGCTTTCACAAA+AGG - Chr2:8230498-8230517 None:intergenic 30.0%
AACAGCAAGAAAAAGTGATT+TGG + Chr2:8232784-8232803 MsG0280006937.01.T01:intron 30.0%
AACTTAGAAAGCCAAGAAAA+AGG - Chr2:8233109-8233128 None:intergenic 30.0%
ACTAGATTGTGTAAAGAAAG+GGG - Chr2:8232935-8232954 None:intergenic 30.0%
AGAAATGTTAAATAGGAACG+TGG - Chr2:8232880-8232899 None:intergenic 30.0%
AGAATAATGTGTTGCAAAAG+TGG + Chr2:8230262-8230281 MsG0280006937.01.T01:intron 30.0%
AGATTGTGTAACGTTGTTTA+CGG + Chr2:8229733-8229752 MsG0280006937.01.T01:CDS 30.0%
AGGTATAGTCAAGTTAAAAG+AGG + Chr2:8233254-8233273 MsG0280006937.01.T01:intron 30.0%
ATTAAATTGCACAATTGCAC+TGG + Chr2:8232564-8232583 MsG0280006937.01.T01:intron 30.0%
CAAATTATTCTGCATAGCAT+AGG + Chr2:8230203-8230222 MsG0280006937.01.T01:intron 30.0%
CACTTTGTGATTCTTTCAAA+CGG - Chr2:8230144-8230163 None:intergenic 30.0%
CATAAACACGGAAACTAAAA+GGG + Chr2:8231789-8231808 MsG0280006937.01.T01:intron 30.0%
CCTATAATCATCCATAAACA+CGG + Chr2:8231777-8231796 MsG0280006937.01.T01:intron 30.0%
CGTGTTTATGGATGATTATA+GGG - Chr2:8231779-8231798 None:intergenic 30.0%
CTCAAAATGTTGTAGTCATT+TGG + Chr2:8231680-8231699 MsG0280006937.01.T01:intron 30.0%
CTGAGAGTGATGAATAATTT+AGG + Chr2:8231227-8231246 MsG0280006937.01.T01:intron 30.0%
CTTCATCTAATCATTCATGA+CGG - Chr2:8231895-8231914 None:intergenic 30.0%
GAAAAAACATGAAGAGTTGA+AGG + Chr2:8233637-8233656 MsG0280006937.01.T01:intron 30.0%
GAAACCAAAGAAAGTTTCAA+GGG + Chr2:8233685-8233704 MsG0280006937.01.T01:intron 30.0%
GAAATGTTAAATAGGAACGT+GGG - Chr2:8232879-8232898 None:intergenic 30.0%
GACGGTTAGAAATGTTAAAT+AGG - Chr2:8232887-8232906 None:intergenic 30.0%
GATATGAGTCAATATGGTTT+AGG + Chr2:8234030-8234049 MsG0280006937.01.T01:CDS 30.0%
GCTTAGAAGATCAAAGAAAA+CGG + Chr2:8233289-8233308 MsG0280006937.01.T01:intron 30.0%
GGAAAATATGGTAACAAAAG+TGG + Chr2:8233223-8233242 MsG0280006937.01.T01:CDS 30.0%
GGACTTGAAATTGGAATAAT+TGG - Chr2:8229495-8229514 None:intergenic 30.0%
GTAAAAAACTGTTCTTGTAG+AGG - Chr2:8231633-8231652 None:intergenic 30.0%
GTAAATGTTAGATTTGGCTA+AGG - Chr2:8232974-8232993 None:intergenic 30.0%
GTCATGAATGATTAGATGAA+GGG + Chr2:8231894-8231913 MsG0280006937.01.T01:intron 30.0%
GTCGTATATACCAAATAGAA+CGG - Chr2:8231528-8231547 None:intergenic 30.0%
GTGAGAATCATGGAATAATA+GGG - Chr2:8230993-8231012 None:intergenic 30.0%
GTGTTTATGGATGATTATAG+GGG - Chr2:8231778-8231797 None:intergenic 30.0%
TAACAAAAGTGGAAGAAAAC+AGG + Chr2:8233234-8233253 MsG0280006937.01.T01:CDS 30.0%
TAATTTATAGGGGTTTCCTT+TGG - Chr2:8232210-8232229 None:intergenic 30.0%
TATAGTCAAGTTAAAAGAGG+AGG + Chr2:8233257-8233276 MsG0280006937.01.T01:intron 30.0%
TCAATCGAACCAAAATTTGA+TGG + Chr2:8229516-8229535 MsG0280006937.01.T01:intron 30.0%
TCATGAATGATTAGATGAAG+GGG + Chr2:8231895-8231914 MsG0280006937.01.T01:intron 30.0%
TGAAGAGAAACAGATTAGTA+AGG + Chr2:8233912-8233931 MsG0280006937.01.T01:CDS 30.0%
TGGTTTGATATGAGTCAATA+TGG + Chr2:8234024-8234043 MsG0280006937.01.T01:CDS 30.0%
TGTGAGAATCATGGAATAAT+AGG - Chr2:8230994-8231013 None:intergenic 30.0%
TTCATCTAATCTAACCTACT+TGG + Chr2:8232290-8232309 MsG0280006937.01.T01:intron 30.0%
! AAATCGAAGTTGTTTGTTGA+TGG - Chr2:8229827-8229846 None:intergenic 30.0%
! AAGCAATTTCTGATCTGTTT+TGG + Chr2:8230296-8230315 MsG0280006937.01.T01:intron 30.0%
! ACGTTTTACGTATTTTGTTG+TGG - Chr2:8231600-8231619 None:intergenic 30.0%
! CATAATCAAAGTATTTAGGC+AGG + Chr2:8233999-8234018 MsG0280006937.01.T01:CDS 30.0%
! CGTTTAAAGTCACTTGTAAT+TGG - Chr2:8232383-8232402 None:intergenic 30.0%
! CTCAGATAAACGATATTTTG+GGG + Chr2:8231262-8231281 MsG0280006937.01.T01:intron 30.0%
! GAAATTCACCAATTTGAGTT+TGG - Chr2:8230676-8230695 None:intergenic 30.0%
! TATGCAGAATAATTTGTAGC+AGG - Chr2:8230199-8230218 None:intergenic 30.0%
! TCGCACAATCAAATCATTTT+TGG + Chr2:8229456-8229475 MsG0280006937.01.T01:CDS 30.0%
! TTTGGTTTCTTTACAGAACT+GGG + Chr2:8230314-8230333 MsG0280006937.01.T01:intron 30.0%
!! ATGATTGATTCGTCATGTAA+TGG - Chr2:8229852-8229871 None:intergenic 30.0%
!! TCAGATAAACGATATTTTGG+GGG + Chr2:8231263-8231282 MsG0280006937.01.T01:intron 30.0%
!! TTACGTATTTTGTTGTGGTA+GGG - Chr2:8231595-8231614 None:intergenic 30.0%
!! TTTACGTATTTTGTTGTGGT+AGG - Chr2:8231596-8231615 None:intergenic 30.0%
!!! CAATGAATGATCCCTTTTTT+AGG - Chr2:8232727-8232746 None:intergenic 30.0%
!!! CGGTAGTTTGTCAAATTTTT+TGG - Chr2:8231508-8231527 None:intergenic 30.0%
!!! GTTTTTTAAAACTCGACATC+CGG - Chr2:8232450-8232469 None:intergenic 30.0%
!!! TCAAATTTTGGTTCGATTGA+AGG - Chr2:8229516-8229535 None:intergenic 30.0%
!!! TGTTGCAAAAGTGGTTTTTT+TGG + Chr2:8230271-8230290 MsG0280006937.01.T01:intron 30.0%
!!! TTTCTCCATTTTGAGTTTGA+AGG + Chr2:8230692-8230711 MsG0280006937.01.T01:intron 30.0%
!!! TTTTGGTTTCTTTACAGAAC+TGG + Chr2:8230313-8230332 MsG0280006937.01.T01:intron 30.0%
AAAGAATCACAAAGTGCGTT+AGG + Chr2:8230148-8230167 MsG0280006937.01.T01:intron 35.0%
AACAACGTTACACAATCTCA+CGG - Chr2:8229731-8229750 None:intergenic 35.0%
AAGGAGGCTGTTAAAATAGT+TGG + Chr2:8230711-8230730 MsG0280006937.01.T01:intron 35.0%
AATGATTTGATTGTGCGAAG+CGG - Chr2:8229454-8229473 None:intergenic 35.0%
AGAAGAAATGGAAGAGTTGT+TGG + Chr2:8233936-8233955 MsG0280006937.01.T01:CDS 35.0%
AGACTCAAGAAAAACAAAGG+AGG + Chr2:8233663-8233682 MsG0280006937.01.T01:intron 35.0%
AGGAACTGTTCACTTGTAAA+GGG - Chr2:8232408-8232427 None:intergenic 35.0%
ATGAATGATTAGATGAAGGG+GGG + Chr2:8231897-8231916 MsG0280006937.01.T01:intron 35.0%
ATGTTCATCAAATCCAAAGC+AGG + Chr2:8233861-8233880 MsG0280006937.01.T01:intron 35.0%
CACAGCAAACTATCTAATTC+TGG - Chr2:8233836-8233855 None:intergenic 35.0%
CATGAATGATTAGATGAAGG+GGG + Chr2:8231896-8231915 MsG0280006937.01.T01:intron 35.0%
CCAATATCAAAACATGAAGG+TGG - Chr2:8233202-8233221 None:intergenic 35.0%
CCACCAATATCAAAACATGA+AGG - Chr2:8233205-8233224 None:intergenic 35.0%
CCATAAACACGGAAACTAAA+AGG + Chr2:8231788-8231807 MsG0280006937.01.T01:intron 35.0%
CCGTGTTTATGGATGATTAT+AGG - Chr2:8231780-8231799 None:intergenic 35.0%
CGTCATGAATGATTAGATGA+AGG + Chr2:8231893-8231912 MsG0280006937.01.T01:intron 35.0%
CTTGGATTAAGTGCAAGTAT+TGG + Chr2:8232308-8232327 MsG0280006937.01.T01:intron 35.0%
GAAAACGGTGAATGATAAGA+AGG + Chr2:8233304-8233323 MsG0280006937.01.T01:intron 35.0%
GATGAAGAAAGAAATTGTGG+AGG + Chr2:8233793-8233812 MsG0280006937.01.T01:intron 35.0%
GATGGCTTTCTTAGTTATGT+TGG + Chr2:8230559-8230578 MsG0280006937.01.T01:intron 35.0%
GATTAGTAAGGCAGAAGAAA+TGG + Chr2:8233924-8233943 MsG0280006937.01.T01:CDS 35.0%
GGAAACCAAAGAAAGTTTCA+AGG + Chr2:8233684-8233703 MsG0280006937.01.T01:intron 35.0%
GTTGATATGCTATCTGCTTA+GGG - Chr2:8231859-8231878 None:intergenic 35.0%
TACTACGTGGACCTAAAAAA+GGG + Chr2:8232713-8232732 MsG0280006937.01.T01:intron 35.0%
TACTTGCACTTAATCCAAGT+AGG - Chr2:8232307-8232326 None:intergenic 35.0%
TCAATCATCAATTTCGATCC+CGG + Chr2:8229864-8229883 MsG0280006937.01.T01:CDS 35.0%
TCGAATATCGACACAAAAGT+GGG + Chr2:8231122-8231141 MsG0280006937.01.T01:intron 35.0%
TCGATTGAAGGACTTGAAAT+TGG - Chr2:8229504-8229523 None:intergenic 35.0%
TCTTCTTCTTCTACTTCTTC+TGG + Chr2:8233082-8233101 MsG0280006937.01.T01:intron 35.0%
TGACAAACTACCGTTCTATT+TGG + Chr2:8231515-8231534 MsG0280006937.01.T01:intron 35.0%
TGTTAGATCAGAATGCAATG+CGG + Chr2:8234053-8234072 MsG0280006937.01.T01:CDS 35.0%
TGTTGATATGCTATCTGCTT+AGG - Chr2:8231860-8231879 None:intergenic 35.0%
TGTTGGAATATAGACGTTTC+TGG + Chr2:8232137-8232156 MsG0280006937.01.T01:intron 35.0%
TTATGTTCCTCATCATCTTG+TGG - Chr2:8229628-8229647 None:intergenic 35.0%
TTCACCCTTGAAACTTTCTT+TGG - Chr2:8233692-8233711 None:intergenic 35.0%
TTCATGTTATGAGAGAAGAG+TGG + Chr2:8231924-8231943 MsG0280006937.01.T01:intron 35.0%
TTGATATGCTATCTGCTTAG+GGG - Chr2:8231858-8231877 None:intergenic 35.0%
TTGCAACACATTATTCTGCA+GGG - Chr2:8230259-8230278 None:intergenic 35.0%
TTGTGAAGAGAAAGTTTCAC+CGG - Chr2:8229997-8230016 None:intergenic 35.0%
TTTGCAACACATTATTCTGC+AGG - Chr2:8230260-8230279 None:intergenic 35.0%
! AACAACGCCTAATTTTGCAA+AGG - Chr2:8231655-8231674 None:intergenic 35.0%
! CTTGGTGTACAAATTGTTCT+TGG - Chr2:8233489-8233508 None:intergenic 35.0%
! CTTTTTGCACAAGCTTCTTT+TGG + Chr2:8230455-8230474 MsG0280006937.01.T01:intron 35.0%
! GAATATAGACGTTTCTGGAT+GGG + Chr2:8232142-8232161 MsG0280006937.01.T01:intron 35.0%
! GCAAAAGAATGTGTTGTTCT+TGG - Chr2:8233507-8233526 None:intergenic 35.0%
! TCAAAGTATTTAGGCAGGTA+TGG + Chr2:8234004-8234023 MsG0280006937.01.T01:CDS 35.0%
!! AACGAACCAAAAGTGTTTCT+TGG - Chr2:8230041-8230060 None:intergenic 35.0%
!! AAGCATAAGAGTACTCATGT+GGG - Chr2:8230941-8230960 None:intergenic 35.0%
!! ATAAACGATATTTTGGGGGT+TGG + Chr2:8231267-8231286 MsG0280006937.01.T01:intron 35.0%
!! CTTTTGGAAAAGCTGTTTTG+GGG + Chr2:8230422-8230441 MsG0280006937.01.T01:intron 35.0%
!! GAATCTCTAAAATCCTGCTT+TGG - Chr2:8233877-8233896 None:intergenic 35.0%
!! GATGGATTATCCATCAGATT+GGG + Chr2:8229534-8229553 MsG0280006937.01.T01:intron 35.0%
!! GCTTTTGGAAAAGCTGTTTT+GGG + Chr2:8230421-8230440 MsG0280006937.01.T01:intron 35.0%
!! TCAACCTTTGAAACCAATCT+TGG - Chr2:8233724-8233743 None:intergenic 35.0%
!! TGATGGATTATCCATCAGAT+TGG + Chr2:8229533-8229552 MsG0280006937.01.T01:intron 35.0%
!! TGATTTGGTCACAAGATTTG+TGG + Chr2:8232799-8232818 MsG0280006937.01.T01:intron 35.0%
!! TGTTTGTTGATGGCAAAAAC+AGG - Chr2:8229817-8229836 None:intergenic 35.0%
!! TTCACCAAGATTGGTTTCAA+AGG + Chr2:8233717-8233736 MsG0280006937.01.T01:intron 35.0%
!!! CCACCTTCATGTTTTGATAT+TGG + Chr2:8233199-8233218 MsG0280006937.01.T01:CDS 35.0%
!!! CCTTCATGTTTTGATATTGG+TGG + Chr2:8233202-8233221 MsG0280006937.01.T01:CDS 35.0%
!!! CCTTTTAGTTTCCGTGTTTA+TGG - Chr2:8231791-8231810 None:intergenic 35.0%
AAGAGTTCATGCAACAATGG+AGG + Chr2:8231955-8231974 MsG0280006937.01.T01:intron 40.0%
AATATCGACACAAAAGTGGG+AGG + Chr2:8231125-8231144 MsG0280006937.01.T01:intron 40.0%
AGAGTTCATGCAACAATGGA+GGG + Chr2:8231956-8231975 MsG0280006937.01.T01:intron 40.0%
AGCCTCCTTCAAACTCAAAA+TGG - Chr2:8230700-8230719 None:intergenic 40.0%
ATTATGACGAGAACTTCCAG+CGG - Chr2:8229703-8229722 None:intergenic 40.0%
CAAAACGGAATTGGATTCGT+CGG - Chr2:8229935-8229954 None:intergenic 40.0%
CAAATTAGTCGTCATTGAGC+CGG + Chr2:8232428-8232447 MsG0280006937.01.T01:intron 40.0%
CATGAAATCTCCCAATCTGA+TGG - Chr2:8229547-8229566 None:intergenic 40.0%
CGAGTCTTCAATTCAGATTC+AGG - Chr2:8229655-8229674 None:intergenic 40.0%
CGATATTCGAGACTTACGAT+AGG - Chr2:8231112-8231131 None:intergenic 40.0%
CTACTACGTGGACCTAAAAA+AGG + Chr2:8232712-8232731 MsG0280006937.01.T01:intron 40.0%
CTCGAATATCGACACAAAAG+TGG + Chr2:8231121-8231140 MsG0280006937.01.T01:intron 40.0%
CTCTAACCACTTCATCAACA+CGG - Chr2:8229407-8229426 None:intergenic 40.0%
GAGGAACTGTTCACTTGTAA+AGG - Chr2:8232409-8232428 None:intergenic 40.0%
GATGATGCTGATGAAGAAGA+AGG - Chr2:8233061-8233080 None:intergenic 40.0%
GCTCAATGACGACTAATTTG+AGG - Chr2:8232428-8232447 None:intergenic 40.0%
GTGATTCGACACTGTAATTC+AGG - Chr2:8230366-8230385 None:intergenic 40.0%
GTTGTTCACTGTGAGAATCA+TGG - Chr2:8231003-8231022 None:intergenic 40.0%
TATCCACCACAAAACGGAAT+TGG - Chr2:8229944-8229963 None:intergenic 40.0%
TATTCGAGACTTACGATAGG+CGG - Chr2:8231109-8231128 None:intergenic 40.0%
TATTTCTTGCAAGACGGTTC+TGG + Chr2:8230513-8230532 MsG0280006937.01.T01:intron 40.0%
TCACACATTGGGAATCAAGA+TGG + Chr2:8230541-8230560 MsG0280006937.01.T01:intron 40.0%
TCGACACTGTAATTCAGGAA+CGG - Chr2:8230361-8230380 None:intergenic 40.0%
TTATGAGAGAAGAGTGGAGA+GGG + Chr2:8231930-8231949 MsG0280006937.01.T01:intron 40.0%
TTTCTGGATGGGAATAGTAC+AGG + Chr2:8232153-8232172 MsG0280006937.01.T01:intron 40.0%
TTTGGTCACAAGATTTGTGG+CGG + Chr2:8232802-8232821 MsG0280006937.01.T01:intron 40.0%
! AATCCAATTCCGTTTTGTGG+TGG + Chr2:8229938-8229957 MsG0280006937.01.T01:CDS 40.0%
! ACGAATCCAATTCCGTTTTG+TGG + Chr2:8229935-8229954 MsG0280006937.01.T01:CDS 40.0%
! AGGTTTTCTGCGATTCACTA+AGG - Chr2:8231060-8231079 None:intergenic 40.0%
! ATTTGAGAGGAAAGCACAAC+AGG + Chr2:8233390-8233409 MsG0280006937.01.T01:intron 40.0%
! CTGTTTTGCAAATGCGCTTT+TGG + Chr2:8230406-8230425 MsG0280006937.01.T01:intron 40.0%
! CTTCTTCTGGTCCTTTTTCT+TGG + Chr2:8233095-8233114 MsG0280006937.01.T01:intron 40.0%
! GCACTGGTATAGTTCATCAT+TGG + Chr2:8232580-8232599 MsG0280006937.01.T01:intron 40.0%
! GGAATATAGACGTTTCTGGA+TGG + Chr2:8232141-8232160 MsG0280006937.01.T01:intron 40.0%
! GTCATGCCAAGAAACACTTT+TGG + Chr2:8230032-8230051 MsG0280006937.01.T01:CDS 40.0%
! TTCGCAGCGAAAAACGATTT+TGG + Chr2:8230098-8230117 MsG0280006937.01.T01:intron 40.0%
!! CAAGCATAAGAGTACTCATG+TGG - Chr2:8230942-8230961 None:intergenic 40.0%
!! CGCTTTTGGAAAAGCTGTTT+TGG + Chr2:8230420-8230439 MsG0280006937.01.T01:intron 40.0%
!! GCATGCTATTTCTTGCAAGA+CGG + Chr2:8230507-8230526 MsG0280006937.01.T01:intron 40.0%
!! TTCTGGCTTTCTCACACATT+GGG + Chr2:8230530-8230549 MsG0280006937.01.T01:intron 40.0%
!!! ACAAGCTTCTTTTGGTTCAG+TGG + Chr2:8230463-8230482 MsG0280006937.01.T01:intron 40.0%
!!! CTCCATTTTGAGTTTGAAGG+AGG + Chr2:8230695-8230714 MsG0280006937.01.T01:intron 40.0%
AAGAAAGGGGAACAGTGATG+CGG - Chr2:8232922-8232941 None:intergenic 45.0%
ATGCGGTGAGTTGTGAAAGA+CGG - Chr2:8232905-8232924 None:intergenic 45.0%
CCACGAAGCAAAAAGCTTCA+CGG - Chr2:8229767-8229786 None:intergenic 45.0%
CGTGATTTCGAGAAGAAGAG+AGG + Chr2:8231294-8231313 MsG0280006937.01.T01:intron 45.0%
CTGCGATTCACTAAGGTACA+TGG - Chr2:8231053-8231072 None:intergenic 45.0%
GAGAAAGTTTCACCGGAATC+AGG - Chr2:8229990-8230009 None:intergenic 45.0%
GAGTTCATGCAACAATGGAG+GGG + Chr2:8231957-8231976 MsG0280006937.01.T01:intron 45.0%
GGGAAGAGTTCATGCAACAA+TGG + Chr2:8231952-8231971 MsG0280006937.01.T01:intron 45.0%
GGTGATAAAGAGGACAACAG+TGG - Chr2:8232238-8232257 None:intergenic 45.0%
GGTTGTTGCTATCTCGTTTC+TGG - Chr2:8231032-8231051 None:intergenic 45.0%
GTTATGAGAGAAGAGTGGAG+AGG + Chr2:8231929-8231948 MsG0280006937.01.T01:intron 45.0%
TAGAGCTTCTGCACAACTTC+TGG + Chr2:8229422-8229441 MsG0280006937.01.T01:CDS 45.0%
TATGAGAGAAGAGTGGAGAG+GGG + Chr2:8231931-8231950 MsG0280006937.01.T01:intron 45.0%
TCGTCGGAGAACTGTGTAAA+CGG - Chr2:8229919-8229938 None:intergenic 45.0%
TCTTGGCATGACAGTGACTT+TGG - Chr2:8230024-8230043 None:intergenic 45.0%
TGCAGGGAAGAACAGAAACA+GGG - Chr2:8230243-8230262 None:intergenic 45.0%
TGCTACTCCACAAGATGATG+AGG + Chr2:8229618-8229637 MsG0280006937.01.T01:CDS 45.0%
TTAGGTCCACGTAGTAGTAG+TGG - Chr2:8232709-8232728 None:intergenic 45.0%
TTGGTCACAAGATTTGTGGC+GGG + Chr2:8232803-8232822 MsG0280006937.01.T01:intron 45.0%
! ATTCCAACAAGAGCGCGATT+TGG + Chr2:8231830-8231849 MsG0280006937.01.T01:intron 45.0%
! CCAAGGTATCCACCACAAAA+CGG - Chr2:8229950-8229969 None:intergenic 45.0%
! GAGAATCCGTGTTGATGAAG+TGG + Chr2:8229398-8229417 MsG0280006937.01.T01:CDS 45.0%
!! GAGGAAAGCACAACAGGTTT+TGG + Chr2:8233396-8233415 MsG0280006937.01.T01:intron 45.0%
!! GTTCTGGCTTTCTCACACAT+TGG + Chr2:8230529-8230548 MsG0280006937.01.T01:intron 45.0%
!!! CGTTTTGTGGTGGATACCTT+GGG + Chr2:8229948-8229967 MsG0280006937.01.T01:CDS 45.0%
AACCCACCACTACTACTACG+TGG + Chr2:8232700-8232719 MsG0280006937.01.T01:intron 50.0%
ACACGAACCAACTCTTTCGC+CGG - Chr2:8229886-8229905 None:intergenic 50.0%
ATGAGAGAAGAGTGGAGAGG+GGG + Chr2:8231932-8231951 MsG0280006937.01.T01:intron 50.0%
CGAAGCAAAAAGCTTCACGG+CGG - Chr2:8229764-8229783 None:intergenic 50.0%
CTGCAGGGAAGAACAGAAAC+AGG - Chr2:8230244-8230263 None:intergenic 50.0%
GCGTTAGGTGAAGTGCGTTT+GGG + Chr2:8230163-8230182 MsG0280006937.01.T01:intron 50.0%
GTCCACGTAGTAGTAGTGGT+GGG - Chr2:8232705-8232724 None:intergenic 50.0%
TACGGTGACTTAAGTCACGC+AGG - Chr2:8232029-8232048 None:intergenic 50.0%
TCGACACAAAAGTGGGAGGA+TGG + Chr2:8231129-8231148 MsG0280006937.01.T01:intron 50.0%
TGCGTTAGGTGAAGTGCGTT+TGG + Chr2:8230162-8230181 MsG0280006937.01.T01:intron 50.0%
TTATAGGGGTTGTTCTCCCC+TGG - Chr2:8231764-8231783 None:intergenic 50.0%
TTGCAGCGATTGACTGACGA+AGG - Chr2:8231080-8231099 None:intergenic 50.0%
TTTCGTCAACTCTGAACCGC+TGG + Chr2:8229684-8229703 MsG0280006937.01.T01:CDS 50.0%
! AGGGAGGCATATCCTGATTC+CGG + Chr2:8229975-8229994 MsG0280006937.01.T01:CDS 50.0%
! CCGTGAAGCTTTTTGCTTCG+TGG + Chr2:8229764-8229783 MsG0280006937.01.T01:CDS 50.0%
!!! CCGTTTTGTGGTGGATACCT+TGG + Chr2:8229947-8229966 MsG0280006937.01.T01:CDS 50.0%
ATATGCCTCCCTCGATCCCA+AGG - Chr2:8229967-8229986 None:intergenic 55.0%
CACGAACCAACTCTTTCGCC+GGG - Chr2:8229885-8229904 None:intergenic 55.0%
GCACCAAATCGCGCTCTTGT+TGG - Chr2:8231836-8231855 None:intergenic 55.0%
GGTCCACGTAGTAGTAGTGG+TGG - Chr2:8232706-8232725 None:intergenic 55.0%
GGTGGATACCTTGGGATCGA+GGG + Chr2:8229956-8229975 MsG0280006937.01.T01:CDS 55.0%
TCGAGACTTACGATAGGCGG+CGG - Chr2:8231106-8231125 None:intergenic 55.0%
TTCGATCCCGGCGAAAGAGT+TGG + Chr2:8229876-8229895 MsG0280006937.01.T01:CDS 55.0%
! TGGTGGATACCTTGGGATCG+AGG + Chr2:8229955-8229974 MsG0280006937.01.T01:CDS 55.0%
GGATACCTTGGGATCGAGGG+AGG + Chr2:8229959-8229978 MsG0280006937.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 8229390 8234107 8229390 ID=MsG0280006937.01;Name=MsG0280006937.01
Chr2 mRNA 8229390 8234107 8229390 ID=MsG0280006937.01.T01;Parent=MsG0280006937.01;Name=MsG0280006937.01.T01;_AED=0.50;_eAED=0.60;_QI=0|0|0|1|1|1|4|0|320
Chr2 exon 8229390 8229477 8229390 ID=MsG0280006937.01.T01:exon:1801;Parent=MsG0280006937.01.T01
Chr2 exon 8229551 8230096 8229551 ID=MsG0280006937.01.T01:exon:1802;Parent=MsG0280006937.01.T01
Chr2 exon 8233152 8233255 8233152 ID=MsG0280006937.01.T01:exon:1803;Parent=MsG0280006937.01.T01
Chr2 exon 8233883 8234107 8233883 ID=MsG0280006937.01.T01:exon:1804;Parent=MsG0280006937.01.T01
Chr2 CDS 8229390 8229477 8229390 ID=MsG0280006937.01.T01:cds;Parent=MsG0280006937.01.T01
Chr2 CDS 8229551 8230096 8229551 ID=MsG0280006937.01.T01:cds;Parent=MsG0280006937.01.T01
Chr2 CDS 8233152 8233255 8233152 ID=MsG0280006937.01.T01:cds;Parent=MsG0280006937.01.T01
Chr2 CDS 8233883 8234107 8233883 ID=MsG0280006937.01.T01:cds;Parent=MsG0280006937.01.T01
Gene Sequence

>MsG0280006937.01.T01

ATGAAGATGAGAATCCGTGTTGATGAAGTGGTTAGAGCTTCTGCACAACTTCTGGAATCTTCCGCTTCGCACAATCAAATCATTTTTGATTGGGAGATTTCATGTGTTCTCACTGATTCTTGCAAGAGTATCATCGATGATGATGATTCAGTATTTGCTACTCCACAAGATGATGAGGAACATAATGTTCCTGAATCTGAATTGAAGACTCGCAATGCTGATTTCGTCAACTCTGAACCGCTGGAAGTTCTCGTCATAATTTTTTCCGTGAGATTGTGTAACGTTGTTTACGGCATCGCCGCCGTGAAGCTTTTTGCTTCGTGGTCGTTCGTCGAAAAGCAATATGAACATCCTGTTTTTGCCATCAACAAACAACTTCGATTTCTCCATTACATGACGAATCAATCATCAATTTCGATCCCGGCGAAAGAGTTGGTTCGTGTTTTCTGTTCTCCGTTTACACAGTTCTCCGACGAATCCAATTCCGTTTTGTGGTGGATACCTTGGGATCGAGGGAGGCATATCCTGATTCCGGTGAAACTTTCTCTTCACAACTTTCCAAAGTCACTGTCATGCCAAGAAACACTTTTGGTTCGTTATGCTACGCGTCATTGCAATATTCTAGCGTTTCGTAATTCAAATCATGCAAAAATATTGAAACAGAAAGAAAAGAAGAATTCTCCACCTTCATGTTTTGATATTGGTGGAAAATATGGTAACAAAAGTGGAAGAAAACAGGATTTTAGAGATTCAATGATTGAGATGATTGAAGAGAAACAGATTAGTAAGGCAGAAGAAATGGAAGAGTTGTTGGCATGTTATTTGACTTTGAATGCTGATGAGTATCATGATCTCATAATCAAAGTATTTAGGCAGGTATGGTTTGATATGAGTCAATATGGTTTAGGTGTTAGATCAGAATGCAATGCGGTTTCCATGAATGATAATTACCAATTAGAGTAG

Protein sequence

>MsG0280006937.01.T01

MKMRIRVDEVVRASAQLLESSASHNQIIFDWEISCVLTDSCKSIIDDDDSVFATPQDDEEHNVPESELKTRNADFVNSEPLEVLVIIFSVRLCNVVYGIAAVKLFASWSFVEKQYEHPVFAINKQLRFLHYMTNQSSISIPAKELVRVFCSPFTQFSDESNSVLWWIPWDRGRHILIPVKLSLHNFPKSLSCQETLLVRYATRHCNILAFRNSNHAKILKQKEKKNSPPSCFDIGGKYGNKSGRKQDFRDSMIEMIEEKQISKAEEMEELLACYLTLNADEYHDLIIKVFRQVWFDMSQYGLGVRSECNAVSMNDNYQLE*