Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004453.01.T01 | XP_039685040.1 | 92.833 | 293 | 16 | 1 | 1 | 293 | 1 | 288 | 0 | 550 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004453.01.T01 | G7I6T0 | 92.833 | 293 | 16 | 1 | 1 | 293 | 1 | 288 | 0.0 | 550 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047831.01 | MsG0180004453.01 | 0.813249 | 2.816367e-51 | 1.829648e-48 |
| MsG0080048595.01 | MsG0180004453.01 | 0.826480 | 2.650620e-54 | 2.488681e-51 |
| MsG0080048992.01 | MsG0180004453.01 | -0.816806 | 4.573111e-52 | 3.273171e-49 |
| MsG0080049133.01 | MsG0180004453.01 | -0.813439 | 2.557736e-51 | 1.670424e-48 |
| MsG0180000417.01 | MsG0180004453.01 | -0.808464 | 3.057862e-50 | 1.749647e-47 |
| MsG0180001054.01 | MsG0180004453.01 | -0.824731 | 6.884592e-54 | 6.150372e-51 |
| MsG0180001463.01 | MsG0180004453.01 | 0.808142 | 3.580964e-50 | 2.031707e-47 |
| MsG0180002099.01 | MsG0180004453.01 | -0.810970 | 8.845852e-51 | 5.408900e-48 |
| MsG0180002214.01 | MsG0180004453.01 | -0.802927 | 4.447596e-49 | 2.205945e-46 |
| MsG0180003350.01 | MsG0180004453.01 | -0.807352 | 5.270817e-50 | 2.929264e-47 |
| MsG0180003757.01 | MsG0180004453.01 | -0.812297 | 4.550830e-51 | 2.882627e-48 |
| MsG0180004193.01 | MsG0180004453.01 | -0.800006 | 1.764255e-48 | 8.125253e-46 |
| MsG0180004453.01 | MsG0180004502.01 | -0.827851 | 1.244768e-54 | 1.216283e-51 |
| MsG0180004453.01 | MsG0180004580.01 | -0.801288 | 9.663088e-49 | 4.597425e-46 |
| MsG0180004453.01 | MsG0180004581.01 | -0.809480 | 1.853582e-50 | 1.089495e-47 |
| MsG0180004453.01 | MsG0180004773.01 | -0.863569 | 2.267134e-64 | 6.903833e-61 |
| MsG0180004453.01 | MsG0180004957.01 | -0.821849 | 3.244539e-53 | 2.670556e-50 |
| MsG0180004453.01 | MsG0180006212.01 | -0.806436 | 8.233004e-50 | 4.468416e-47 |
| MsG0180004453.01 | MsG0180006227.01 | -0.827628 | 1.408659e-54 | 1.367272e-51 |
| MsG0180004453.01 | MsG0280006451.01 | -0.830998 | 2.141854e-55 | 2.294137e-52 |
| MsG0180004453.01 | MsG0280006534.01 | -0.814261 | 1.685531e-51 | 1.125577e-48 |
| MsG0180004453.01 | MsG0280007902.01 | -0.834553 | 2.803548e-56 | 3.338798e-53 |
| MsG0180004453.01 | MsG0280008263.01 | 0.837733 | 4.366602e-57 | 5.724650e-54 |
| MsG0180004453.01 | MsG0280008405.01 | 0.805065 | 1.598039e-49 | 8.373917e-47 |
| MsG0180004453.01 | MsG0280009079.01 | -0.818779 | 1.640396e-52 | 1.239515e-49 |
| MsG0180004453.01 | MsG0280009094.01 | -0.817892 | 2.605503e-52 | 1.921177e-49 |
| MsG0180004453.01 | MsG0280010019.01 | 0.828091 | 1.090160e-54 | 1.072716e-51 |
| MsG0180004453.01 | MsG0280010047.01 | 0.820754 | 5.802434e-53 | 4.631648e-50 |
| MsG0180004453.01 | MsG0280010055.01 | 0.822504 | 2.287101e-53 | 1.917946e-50 |
| MsG0180004453.01 | MsG0280010461.01 | -0.823875 | 1.094452e-53 | 9.541100e-51 |
| MsG0180004453.01 | MsG0280011165.01 | 0.811984 | 5.324986e-51 | 3.344316e-48 |
| MsG0180004453.01 | MsG0280011193.01 | 0.803195 | 3.913394e-49 | 1.954376e-46 |
| MsG0180004453.01 | MsG0280011203.01 | 0.800291 | 1.543986e-48 | 7.162637e-46 |
| MsG0180004453.01 | MsG0280011449.01 | -0.804398 | 2.202001e-49 | 1.134156e-46 |
| MsG0180004453.01 | MsG0380013114.01 | -0.809614 | 1.734083e-50 | 1.023013e-47 |
| MsG0180004453.01 | MsG0380013300.01 | 0.807747 | 4.346959e-50 | 2.440756e-47 |
| MsG0180004453.01 | MsG0380015009.01 | 0.814898 | 1.218541e-51 | 8.277993e-49 |
| MsG0180004453.01 | MsG0380015200.01 | -0.828764 | 7.499348e-55 | 7.524337e-52 |
| MsG0180004453.01 | MsG0380015201.01 | -0.827782 | 1.293603e-54 | 1.261321e-51 |
| MsG0180004453.01 | MsG0380015348.01 | -0.804984 | 1.661452e-49 | 8.688181e-47 |
| MsG0180004453.01 | MsG0380016261.01 | 0.803096 | 4.103168e-49 | 2.043797e-46 |
| MsG0180004453.01 | MsG0380016801.01 | 0.826658 | 2.403692e-54 | 2.268418e-51 |
| MsG0180004453.01 | MsG0380016881.01 | -0.843600 | 1.268061e-58 | 1.994282e-55 |
| MsG0180004453.01 | MsG0380016889.01 | -0.813542 | 2.428210e-51 | 1.590256e-48 |
| MsG0180004453.01 | MsG0380017405.01 | -0.823411 | 1.405245e-53 | 1.208922e-50 |
| MsG0180004453.01 | MsG0380017775.01 | -0.804630 | 1.970359e-49 | 1.020920e-46 |
| MsG0180004453.01 | MsG0380017928.01 | -0.807786 | 4.263082e-50 | 2.396086e-47 |
| MsG0180004453.01 | MsG0480018088.01 | -0.814113 | 1.817957e-51 | 1.209094e-48 |
| MsG0180004453.01 | MsG0480018201.01 | -0.809846 | 1.546133e-50 | 9.176626e-48 |
| MsG0180004453.01 | MsG0480018628.01 | -0.818558 | 1.840664e-52 | 1.382370e-49 |
| MsG0180004453.01 | MsG0480019861.01 | -0.801624 | 8.245442e-49 | 3.956128e-46 |
| MsG0180004453.01 | MsG0480021117.01 | 0.805030 | 1.625153e-49 | 8.508082e-47 |
| MsG0180004453.01 | MsG0480021318.01 | -0.800634 | 1.314604e-48 | 6.151646e-46 |
| MsG0180004453.01 | MsG0480021327.01 | -0.829688 | 4.474473e-55 | 4.613437e-52 |
| MsG0180004453.01 | MsG0480021331.01 | -0.820783 | 5.714162e-53 | 4.564832e-50 |
| MsG0180004453.01 | MsG0480022581.01 | -0.824371 | 8.370371e-54 | 7.399568e-51 |
| MsG0180004453.01 | MsG0480022935.01 | -0.836455 | 9.266287e-57 | 1.168381e-53 |
| MsG0180004453.01 | MsG0480023006.01 | -0.817371 | 3.414140e-52 | 2.481842e-49 |
| MsG0180004453.01 | MsG0580024408.01 | 0.816181 | 6.311652e-52 | 4.441104e-49 |
| MsG0180004453.01 | MsG0580026492.01 | 0.812259 | 4.639635e-51 | 2.935848e-48 |
| MsG0180004453.01 | MsG0580029820.01 | -0.851290 | 9.773012e-61 | 1.968698e-57 |
| MsG0180004453.01 | MsG0580030133.01 | 0.837079 | 6.422054e-57 | 8.250135e-54 |
| MsG0180004453.01 | MsG0580030135.01 | 0.827552 | 1.468745e-54 | 1.422580e-51 |
| MsG0180004453.01 | MsG0680030399.01 | -0.819665 | 1.031035e-52 | 7.984295e-50 |
| MsG0180004453.01 | MsG0680030441.01 | -0.822119 | 2.809122e-53 | 2.329816e-50 |
| MsG0180004453.01 | MsG0680030878.01 | -0.807727 | 4.388368e-50 | 2.462719e-47 |
| MsG0180004453.01 | MsG0680031813.01 | -0.807077 | 6.027285e-50 | 3.325615e-47 |
| MsG0180004453.01 | MsG0680034229.01 | -0.810982 | 8.790463e-51 | 5.376967e-48 |
| MsG0180004453.01 | MsG0680034316.01 | 0.820986 | 5.131551e-53 | 4.123093e-50 |
| MsG0180004453.01 | MsG0680034317.01 | 0.817950 | 2.527155e-52 | 1.866367e-49 |
| MsG0180004453.01 | MsG0780035993.01 | 0.808500 | 3.003468e-50 | 1.720153e-47 |
| MsG0180004453.01 | MsG0780036661.01 | 0.832430 | 9.495356e-56 | 1.061036e-52 |
| MsG0180004453.01 | MsG0780037458.01 | -0.808026 | 3.790463e-50 | 2.143920e-47 |
| MsG0180004453.01 | MsG0780038030.01 | -0.815518 | 8.872337e-52 | 6.130731e-49 |
| MsG0180004453.01 | MsG0780038106.01 | -0.818167 | 2.257097e-52 | 1.676920e-49 |
| MsG0180004453.01 | MsG0780038108.01 | -0.835494 | 1.624140e-56 | 1.989411e-53 |
| MsG0180004453.01 | MsG0780038263.01 | -0.828555 | 8.424013e-55 | 8.401798e-52 |
| MsG0180004453.01 | MsG0780039238.01 | -0.800329 | 1.516716e-48 | 7.042969e-46 |
| MsG0180004453.01 | MsG0780039836.01 | -0.819040 | 1.430567e-52 | 1.088863e-49 |
| MsG0180004453.01 | MsG0780039838.01 | -0.813290 | 2.759211e-51 | 1.794591e-48 |
| MsG0180004453.01 | MsG0780039839.01 | -0.823182 | 1.589617e-53 | 1.358849e-50 |
| MsG0180004453.01 | MsG0780039978.01 | 0.817253 | 3.629217e-52 | 2.629562e-49 |
| MsG0180004453.01 | MsG0780040321.01 | -0.836727 | 7.899595e-57 | 1.004200e-53 |
| MsG0180004453.01 | MsG0780040429.01 | -0.803274 | 3.770134e-49 | 1.886572e-46 |
| MsG0180004453.01 | MsG0780040838.01 | -0.801145 | 1.033631e-48 | 4.900063e-46 |
| MsG0180004453.01 | MsG0780041121.01 | -0.811149 | 8.088134e-51 | 4.968546e-48 |
| MsG0180004453.01 | MsG0780041254.01 | -0.800160 | 1.641812e-48 | 7.590619e-46 |
| MsG0180004453.01 | MsG0780041620.01 | -0.820046 | 8.435522e-53 | 6.602933e-50 |
| MsG0180004453.01 | MsG0780041783.01 | -0.805810 | 1.115293e-49 | 5.957305e-47 |
| MsG0180004453.01 | MsG0880042858.01 | -0.803527 | 3.340217e-49 | 1.682496e-46 |
| MsG0180004453.01 | MsG0880042895.01 | -0.861317 | 1.116706e-63 | 3.147055e-60 |
| MsG0180004453.01 | MsG0880042921.01 | -0.820860 | 5.486134e-53 | 4.392341e-50 |
| MsG0180004453.01 | MsG0880044968.01 | -0.826943 | 2.054978e-54 | 1.955467e-51 |
| MsG0180004453.01 | MsG0880045369.01 | -0.816091 | 6.611036e-52 | 4.640306e-49 |
| MsG0180004453.01 | MsG0880045374.01 | -0.805536 | 1.273371e-49 | 6.753568e-47 |
| MsG0180004453.01 | MsG0880045385.01 | -0.820553 | 6.455165e-53 | 5.123928e-50 |
| MsG0180004453.01 | MsG0880045413.01 | -0.818282 | 2.126243e-52 | 1.584698e-49 |
| MsG0180004453.01 | MsG0880045414.01 | -0.818703 | 1.707094e-52 | 1.287146e-49 |
| MsG0180004453.01 | MsG0880045755.01 | -0.813038 | 3.132732e-51 | 2.023677e-48 |
| MsG0180004453.01 | MsG0880046189.01 | -0.811227 | 7.778822e-51 | 4.788413e-48 |
| MsG0180004453.01 | MsG0880046469.01 | -0.827832 | 1.257856e-54 | 1.228300e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004453.01.T01 | MTR_1g080300 | 92.833 | 293 | 16 | 1 | 1 | 293 | 1 | 288 | 0.0 | 550 |
| MsG0180004453.01.T01 | MTR_4g036455 | 38.486 | 317 | 140 | 11 | 6 | 283 | 2 | 302 | 2.23e-43 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004453.01.T01 | AT5G09380 | 42.955 | 291 | 141 | 13 | 6 | 291 | 2 | 272 | 1.60e-58 | 189 |
| MsG0180004453.01.T01 | AT5G09380 | 42.972 | 249 | 117 | 13 | 6 | 249 | 2 | 230 | 3.04e-43 | 148 |
| MsG0180004453.01.T01 | AT5G09380 | 39.910 | 223 | 112 | 8 | 77 | 291 | 8 | 216 | 7.62e-43 | 146 |
| MsG0180004453.01.T01 | AT4G25180 | 32.588 | 313 | 168 | 7 | 11 | 291 | 6 | 307 | 6.60e-39 | 139 |
Find 87 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTGATGAGAAGGAATT+TGG | 0.103967 | 1:+78200138 | MsG0180004453.01.T01:CDS |
| GACTTGCCACCTGGCTTAAT+TGG | 0.180896 | 1:+78200452 | MsG0180004453.01.T01:CDS |
| GATTATTATGGATTTGAATA+AGG | 0.218725 | 1:+78198129 | MsG0180004453.01.T01:exon |
| AGATCGCCATTGGATTATTA+TGG | 0.222843 | 1:+78198117 | MsG0180004453.01.T01:exon |
| GATCATCACACGGTGGTTTC+CGG | 0.237228 | 1:+78197940 | MsG0180004453.01.T01:five_prime_UTR |
| ACTCTAGGAGGTGGAGCTTT+AGG | 0.254194 | 1:-78198285 | None:intergenic |
| TTACCTGGGTTGCCTGAATA+TGG | 0.269034 | 1:-78199832 | None:intergenic |
| AGCAGTGGAGCTTGACCTTT+TGG | 0.287647 | 1:+78200206 | MsG0180004453.01.T01:CDS |
| AACTTGATGAGAAGGAATTT+GGG | 0.290510 | 1:+78200139 | MsG0180004453.01.T01:CDS |
| TTCCTCAAGGGATGAACTAT+TGG | 0.311119 | 1:-78199808 | None:intergenic |
| TTACCTTCACAAATTGCTTT+TGG | 0.328302 | 1:+78199415 | MsG0180004453.01.T01:CDS |
| TCACAATGTATATGTTATTT+CGG | 0.333923 | 1:+78198649 | MsG0180004453.01.T01:CDS |
| TTCACTCTTGCTCCCACCTT+TGG | 0.334265 | 1:-78199476 | None:intergenic |
| ATGAAGAACGCACTTGCCTC+TGG | 0.347213 | 1:-78200326 | None:intergenic |
| ATGATTTGAGATAAGTTGAT+TGG | 0.369910 | 1:-78199447 | None:intergenic |
| TGTAGGAGAATGCGATGAAT+AGG | 0.372729 | 1:+78198760 | MsG0180004453.01.T01:intron |
| ATGCGGTACTTACATCATAA+AGG | 0.374896 | 1:-78200526 | None:intergenic |
| TACCTCTTAACTTCTACCTT+TGG | 0.383568 | 1:-78198309 | None:intergenic |
| AGTCGCTGCAAAAGGGGTTC+AGG | 0.408724 | 1:+78198613 | MsG0180004453.01.T01:CDS |
| GATAATAAAGTCGCTGCAAA+AGG | 0.409682 | 1:+78198605 | MsG0180004453.01.T01:CDS |
| TGCGCTTTCATCATAAGTTC+TGG | 0.411273 | 1:-78200175 | None:intergenic |
| CCCTTGAGGAAACCATATTC+AGG | 0.422684 | 1:+78199820 | MsG0180004453.01.T01:CDS |
| TTATCTTTACCATCAGCATC+TGG | 0.431495 | 1:-78200383 | None:intergenic |
| TCAAGTGCGGCATCTATGTC+CGG | 0.435813 | 1:-78201343 | None:intergenic |
| ATAGAGGTGCGGCGAAGCTC+TGG | 0.437569 | 1:+78200420 | MsG0180004453.01.T01:CDS |
| ACCTTTGGCACTCTAGGAGG+TGG | 0.443489 | 1:-78198294 | None:intergenic |
| ACTTCTACCTTTGGCACTCT+AGG | 0.448884 | 1:-78198300 | None:intergenic |
| TCAACTTATCTCAAATCATA+TGG | 0.456525 | 1:+78199451 | MsG0180004453.01.T01:CDS |
| AAAGCCTCCTCAACGAAGAA+AGG | 0.458707 | 1:+78198156 | MsG0180004453.01.T01:CDS |
| TGCGGTACTTACATCATAAA+GGG | 0.465322 | 1:-78200525 | None:intergenic |
| CACCGTGTGATGATCGGAAA+AGG | 0.467365 | 1:-78197932 | None:intergenic |
| AAATGGTTGCAGGTTTCCTC+GGG | 0.477537 | 1:+78201223 | MsG0180004453.01.T01:intron |
| TGCCAAAGGTAGAAGTTAAG+AGG | 0.486931 | 1:+78198307 | MsG0180004453.01.T01:CDS |
| AAGTTGAATGACTTGCCACC+TGG | 0.487470 | 1:+78200443 | MsG0180004453.01.T01:CDS |
| AAAATGGTTGCAGGTTTCCT+CGG | 0.489431 | 1:+78201222 | MsG0180004453.01.T01:intron |
| ATCGGAAAAGGAGGGACTGC+AGG | 0.491569 | 1:-78197920 | None:intergenic |
| TTTATTTATTTATTGAAGAT+CGG | 0.497583 | 1:+78201472 | MsG0180004453.01.T01:three_prime_UTR |
| GCCGCACCTCTATAACCTCC+AGG | 0.501297 | 1:-78200410 | None:intergenic |
| GGAAACCACCGTGTGATGAT+CGG | 0.505022 | 1:-78197938 | None:intergenic |
| AAGCGCCCTGGAGGTTATAG+AGG | 0.508087 | 1:+78200404 | MsG0180004453.01.T01:CDS |
| CAAGTGCGGCATCTATGTCC+GGG | 0.508235 | 1:-78201342 | None:intergenic |
| ATAATAAAGTCGCTGCAAAA+GGG | 0.509835 | 1:+78198606 | MsG0180004453.01.T01:CDS |
| AGTGAAAATTCAGCATTCAA+TGG | 0.517856 | 1:+78199493 | MsG0180004453.01.T01:CDS |
| CCTGAATATGGTTTCCTCAA+GGG | 0.520964 | 1:-78199820 | None:intergenic |
| CTCAAATCATATGGTACCAA+AGG | 0.523662 | 1:+78199460 | MsG0180004453.01.T01:CDS |
| CAAACCTTTCTTCGTTGAGG+AGG | 0.525936 | 1:-78198160 | None:intergenic |
| AAATCATATGGTACCAAAGG+TGG | 0.526126 | 1:+78199463 | MsG0180004453.01.T01:CDS |
| TGAAGAACGCACTTGCCTCT+GGG | 0.526977 | 1:-78200325 | None:intergenic |
| GATGGTAAAGATAAGCGCCC+TGG | 0.537069 | 1:+78200392 | MsG0180004453.01.T01:CDS |
| TCTTAATAAATATAGAAAGA+AGG | 0.539399 | 1:+78201430 | MsG0180004453.01.T01:three_prime_UTR |
| CAGGCGGAAAGACGTGGGAG+AGG | 0.540326 | 1:-78197901 | None:intergenic |
| GCCTGAATATGGTTTCCTCA+AGG | 0.542011 | 1:-78199821 | None:intergenic |
| CAAGTTTGCTACTGTAACCC+CGG | 0.554282 | 1:+78201324 | MsG0180004453.01.T01:CDS |
| AAACAAACCTTTCTTCGTTG+AGG | 0.554404 | 1:-78198163 | None:intergenic |
| GGTAAAGTTAAGCTGAAGCT+TGG | 0.557395 | 1:+78200497 | MsG0180004453.01.T01:CDS |
| TTTCTGCAGCGAAGTTGTTG+AGG | 0.557435 | 1:+78198580 | MsG0180004453.01.T01:intron |
| GGACTGCAGGCGGAAAGACG+TGG | 0.559357 | 1:-78197907 | None:intergenic |
| AAGCGCAGCAAGTTCAGCAG+TGG | 0.565227 | 1:+78200191 | MsG0180004453.01.T01:CDS |
| CTGCAGCGAAGTTGTTGAGG+AGG | 0.572157 | 1:+78198583 | MsG0180004453.01.T01:intron |
| CGGAGGCTTGACGCAGGAGA+CGG | 0.577002 | 1:-78197869 | None:intergenic |
| GCGGAAAGACGTGGGAGAGG+AGG | 0.578059 | 1:-78197898 | None:intergenic |
| GACTGCAGGCGGAAAGACGT+GGG | 0.578300 | 1:-78197906 | None:intergenic |
| AAACCATATTCAGGCAACCC+AGG | 0.586222 | 1:+78199829 | MsG0180004453.01.T01:CDS |
| AGAAAGAATACAAAGAACCA+TGG | 0.590402 | 1:+78199630 | MsG0180004453.01.T01:CDS |
| AAAATGCTTGTGTACAAAAG+TGG | 0.597068 | 1:+78200476 | MsG0180004453.01.T01:CDS |
| TCAAATCCATAATAATCCAA+TGG | 0.597623 | 1:-78198123 | None:intergenic |
| TCCACCTCCTAGAGTGCCAA+AGG | 0.597729 | 1:+78198293 | MsG0180004453.01.T01:CDS |
| ATCCAATAGTTCATCCCTTG+AGG | 0.604156 | 1:+78199806 | MsG0180004453.01.T01:CDS |
| CGTGTGATGATCGGAAAAGG+AGG | 0.604807 | 1:-78197929 | None:intergenic |
| GCACCAAAAGCAATTTGTGA+AGG | 0.606014 | 1:-78199418 | None:intergenic |
| GAAAGAATACAAAGAACCAT+GGG | 0.607191 | 1:+78199631 | MsG0180004453.01.T01:CDS |
| TCTACCTTTGGCACTCTAGG+AGG | 0.607668 | 1:-78198297 | None:intergenic |
| CCGCACCTCTATAACCTCCA+GGG | 0.614948 | 1:-78200409 | None:intergenic |
| ACTTGATGAGAAGGAATTTG+GGG | 0.615962 | 1:+78200140 | MsG0180004453.01.T01:CDS |
| CCCTGGAGGTTATAGAGGTG+CGG | 0.619090 | 1:+78200409 | MsG0180004453.01.T01:CDS |
| AATCATATGGTACCAAAGGT+GGG | 0.623535 | 1:+78199464 | MsG0180004453.01.T01:CDS |
| CATATACATTGTGACGTCGA+AGG | 0.631565 | 1:-78198640 | None:intergenic |
| GGAAAAGGAGGGACTGCAGG+CGG | 0.640754 | 1:-78197917 | None:intergenic |
| TGATGAGAAGGAATTTGGGG+AGG | 0.643571 | 1:+78200143 | MsG0180004453.01.T01:CDS |
| TAATAAAGTCGCTGCAAAAG+GGG | 0.643629 | 1:+78198607 | MsG0180004453.01.T01:CDS |
| ATCACTTAAACAATCAAGTG+CGG | 0.644848 | 1:-78201356 | None:intergenic |
| TTAATCATAGGAATAACTGG+TGG | 0.659717 | 1:-78200356 | None:intergenic |
| AAATATACAATTCATACCCG+AGG | 0.667331 | 1:-78201239 | None:intergenic |
| GTGTGATGATCGGAAAAGGA+GGG | 0.667650 | 1:-78197928 | None:intergenic |
| AAGTGCGGCATCTATGTCCG+GGG | 0.672815 | 1:-78201341 | None:intergenic |
| GGTAAAGATAAGCGCCCTGG+AGG | 0.687013 | 1:+78200395 | MsG0180004453.01.T01:CDS |
| TTGGCAGGAGGAAAACCCAG+AGG | 0.776096 | 1:+78200310 | MsG0180004453.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAGTAAATTAAATTAGA+TGG | + | Chr1:78199897-78199916 | MsG0180004453.01.T01:intron | 10.0% |
| !! | TTTATTTATTTATTGAAGAT+CGG | + | Chr1:78201472-78201491 | MsG0180004453.01.T01:three_prime_UTR | 10.0% |
| !!! | TTCAATGTATTTTTTTTTTT+TGG | + | Chr1:78198221-78198240 | MsG0180004453.01.T01:intron | 10.0% |
| !! | TAATTATATACTAATCATAG+AGG | + | Chr1:78200965-78200984 | MsG0180004453.01.T01:intron | 15.0% |
| !! | TCTTAATAAATATAGAAAGA+AGG | + | Chr1:78201430-78201449 | MsG0180004453.01.T01:three_prime_UTR | 15.0% |
| !! | TGGAAATAAAACTTATTAAA+TGG | + | Chr1:78201042-78201061 | MsG0180004453.01.T01:intron | 15.0% |
| !! | AATCTCATAATTCTGTAAAA+AGG | - | Chr1:78199986-78200005 | None:intergenic | 20.0% |
| !! | AGTACAAACTATTATCAAAT+AGG | - | Chr1:78198439-78198458 | None:intergenic | 20.0% |
| !! | ATTAAATGAAAATTCCTTGA+TGG | - | Chr1:78199526-78199545 | None:intergenic | 20.0% |
| !! | ATTTAAAAGTCACATAAAGT+TGG | - | Chr1:78198848-78198867 | None:intergenic | 20.0% |
| !! | CAAACTTAGATAATATTACA+TGG | + | Chr1:78200930-78200949 | MsG0180004453.01.T01:intron | 20.0% |
| !! | CTGTATTCAAATATTTGTTT+AGG | - | Chr1:78200704-78200723 | None:intergenic | 20.0% |
| !! | GATTATTATGGATTTGAATA+AGG | + | Chr1:78198129-78198148 | MsG0180004453.01.T01:exon | 20.0% |
| !! | TCAAATATTTGTTTAGGAAA+GGG | - | Chr1:78200698-78200717 | None:intergenic | 20.0% |
| !! | TGGAAATAAATGATATGTAA+TGG | + | Chr1:78201022-78201041 | MsG0180004453.01.T01:intron | 20.0% |
| !! | TGTAATTTATCTTATGAATG+CGG | - | Chr1:78200546-78200565 | None:intergenic | 20.0% |
| !! | TTAAAAGTTAAAACACAGAA+TGG | + | Chr1:78200758-78200777 | MsG0180004453.01.T01:intron | 20.0% |
| !! | TTCAAATATTTGTTTAGGAA+AGG | - | Chr1:78200699-78200718 | None:intergenic | 20.0% |
| !! | TTGAATGTGATATTAGTTAT+TGG | - | Chr1:78198021-78198040 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTCCAAAAGTT+CGG | - | Chr1:78200240-78200259 | None:intergenic | 20.0% |
| !!! | AAAATTGGTCATTTTAAAGA+TGG | - | Chr1:78199005-78199024 | None:intergenic | 20.0% |
| !!! | ACTTTATGTGACTTTTAAAT+CGG | + | Chr1:78198848-78198867 | MsG0180004453.01.T01:intron | 20.0% |
| !!! | ACTTTTGGAAATCAATTTTA+TGG | + | Chr1:78200241-78200260 | MsG0180004453.01.T01:intron | 20.0% |
| !!! | ATGTTTTATCGAGAAAATAA+GGG | + | Chr1:78200648-78200667 | MsG0180004453.01.T01:intron | 20.0% |
| !!! | TATGTTTTATCGAGAAAATA+AGG | + | Chr1:78200647-78200666 | MsG0180004453.01.T01:intron | 20.0% |
| !!! | TATTTTTTTAAAATGGTTGC+AGG | + | Chr1:78201213-78201232 | MsG0180004453.01.T01:intron | 20.0% |
| !!! | TCACAATGTATATGTTATTT+CGG | + | Chr1:78198649-78198668 | MsG0180004453.01.T01:CDS | 20.0% |
| !!! | TTATTTTCTCGATAAAACAT+AGG | - | Chr1:78200648-78200667 | None:intergenic | 20.0% |
| !!! | TTTTTAATCATAGGAATAAC+TGG | - | Chr1:78200362-78200381 | None:intergenic | 20.0% |
| ! | AAAAACAGTTGAATTAGTAC+TGG | + | Chr1:78201002-78201021 | MsG0180004453.01.T01:intron | 25.0% |
| ! | ACTTAGATAATATTACATGG+AGG | + | Chr1:78200933-78200952 | MsG0180004453.01.T01:intron | 25.0% |
| ! | AGACTAAATGTGGTTAAAAA+AGG | - | Chr1:78199587-78199606 | None:intergenic | 25.0% |
| ! | AGTTACCAAATTGACTAATT+GGG | - | Chr1:78199951-78199970 | None:intergenic | 25.0% |
| ! | CAGAAAACAAAATGAAAACA+AGG | + | Chr1:78200721-78200740 | MsG0180004453.01.T01:intron | 25.0% |
| ! | CAGGATTTATGAAAAAAGTA+AGG | - | Chr1:78198902-78198921 | None:intergenic | 25.0% |
| ! | CTATCTAAATTCACTATTTC+AGG | - | Chr1:78198921-78198940 | None:intergenic | 25.0% |
| ! | TAAATGTGGTTAAAAAAGGA+AGG | - | Chr1:78199583-78199602 | None:intergenic | 25.0% |
| ! | TAGAGCTTCACTATTATATT+TGG | - | Chr1:78199266-78199285 | None:intergenic | 25.0% |
| ! | TAGTTACCAAATTGACTAAT+TGG | - | Chr1:78199952-78199971 | None:intergenic | 25.0% |
| ! | TCAAATCCATAATAATCCAA+TGG | - | Chr1:78198126-78198145 | None:intergenic | 25.0% |
| ! | TCAACTTATCTCAAATCATA+TGG | + | Chr1:78199451-78199470 | MsG0180004453.01.T01:CDS | 25.0% |
| ! | TCTCTTTCTGTAAATAGTTT+CGG | + | Chr1:78199139-78199158 | MsG0180004453.01.T01:intron | 25.0% |
| ! | TCTTTGATATAAAGCAAAAG+AGG | + | Chr1:78199868-78199887 | MsG0180004453.01.T01:intron | 25.0% |
| !! | AAATTGCTTCACCTATTTTA+TGG | + | Chr1:78199383-78199402 | MsG0180004453.01.T01:intron | 25.0% |
| !! | ATCTAAAGTAGTAGCAAAAT+TGG | - | Chr1:78199020-78199039 | None:intergenic | 25.0% |
| !! | ATTTAACAACATTGATTACC+TGG | + | Chr1:78198527-78198546 | MsG0180004453.01.T01:intron | 25.0% |
| !! | TCTTTTGCTTTATATCAAAG+AGG | - | Chr1:78199869-78199888 | None:intergenic | 25.0% |
| !! | TGAAAAAAGTAAGGTTTTTC+TGG | - | Chr1:78198893-78198912 | None:intergenic | 25.0% |
| !!! | AGAAAAAAGGTATTGTATGT+TGG | + | Chr1:78198796-78198815 | MsG0180004453.01.T01:intron | 25.0% |
| !!! | ATGATTTGAGATAAGTTGAT+TGG | - | Chr1:78199450-78199469 | None:intergenic | 25.0% |
| !!! | ATGTATATGTTATTTCGGTT+TGG | + | Chr1:78198654-78198673 | MsG0180004453.01.T01:intron | 25.0% |
| !!! | TAATGTTTTGAGCAAATTGT+TGG | + | Chr1:78200291-78200310 | MsG0180004453.01.T01:intron | 25.0% |
| AAAATGCTTGTGTACAAAAG+TGG | + | Chr1:78200476-78200495 | MsG0180004453.01.T01:CDS | 30.0% | |
| AAACTTGATGAGAAGGAATT+TGG | + | Chr1:78200138-78200157 | MsG0180004453.01.T01:CDS | 30.0% | |
| AAATATACAATTCATACCCG+AGG | - | Chr1:78201242-78201261 | None:intergenic | 30.0% | |
| AACACTGCAAACCATAAAAT+AGG | - | Chr1:78199397-78199416 | None:intergenic | 30.0% | |
| AACTTGATGAGAAGGAATTT+GGG | + | Chr1:78200139-78200158 | MsG0180004453.01.T01:CDS | 30.0% | |
| AATCACAGAAAACTTGAACA+AGG | - | Chr1:78198697-78198716 | None:intergenic | 30.0% | |
| AGAAAGAATACAAAGAACCA+TGG | + | Chr1:78199630-78199649 | MsG0180004453.01.T01:CDS | 30.0% | |
| AGTGAAAATTCAGCATTCAA+TGG | + | Chr1:78199493-78199512 | MsG0180004453.01.T01:CDS | 30.0% | |
| ATAATAAAGTCGCTGCAAAA+GGG | + | Chr1:78198606-78198625 | MsG0180004453.01.T01:CDS | 30.0% | |
| ATAGGAATGGAACAAACATT+CGG | - | Chr1:78199229-78199248 | None:intergenic | 30.0% | |
| ATCACAGAAAACTTGAACAA+GGG | - | Chr1:78198696-78198715 | None:intergenic | 30.0% | |
| ATCACTTAAACAATCAAGTG+CGG | - | Chr1:78201359-78201378 | None:intergenic | 30.0% | |
| ATTAAAAAACCAGATGCTGA+TGG | + | Chr1:78200374-78200393 | MsG0180004453.01.T01:CDS | 30.0% | |
| CATGTTCAATAAACGGAAAA+CGG | - | Chr1:78197986-78198005 | None:intergenic | 30.0% | |
| GAAAGAATACAAAGAACCAT+GGG | + | Chr1:78199631-78199650 | MsG0180004453.01.T01:CDS | 30.0% | |
| GAGTGTTCATGTTCAATAAA+CGG | - | Chr1:78197993-78198012 | None:intergenic | 30.0% | |
| GATAGAAAAACTTGATGAGA+AGG | + | Chr1:78200131-78200150 | MsG0180004453.01.T01:intron | 30.0% | |
| TATTAAATGGAAGTTAGTCG+TGG | + | Chr1:78201055-78201074 | MsG0180004453.01.T01:intron | 30.0% | |
| TTAATCATAGGAATAACTGG+TGG | - | Chr1:78200359-78200378 | None:intergenic | 30.0% | |
| TTGCGAATAGTAGAAAATAG+TGG | + | Chr1:78198371-78198390 | MsG0180004453.01.T01:intron | 30.0% | |
| TTTATATCAAAGAGGATTCC+TGG | - | Chr1:78199861-78199880 | None:intergenic | 30.0% | |
| ! | TGTGACGATTTCTCAATTTT+AGG | - | Chr1:78200817-78200836 | None:intergenic | 30.0% |
| ! | TTACCTTCACAAATTGCTTT+TGG | + | Chr1:78199415-78199434 | MsG0180004453.01.T01:CDS | 30.0% |
| ! | TTCTGGAAACAGAAAATCAA+CGG | - | Chr1:78198876-78198895 | None:intergenic | 30.0% |
| !!! | AAAAGTTTTGTTCTGCACTT+GGG | + | Chr1:78201293-78201312 | MsG0180004453.01.T01:CDS | 30.0% |
| !!! | GCATCTGGTTTTTTAATCAT+AGG | - | Chr1:78200371-78200390 | None:intergenic | 30.0% |
| !!! | TTTTAGTTTAAGATCGCCAT+TGG | + | Chr1:78198107-78198126 | MsG0180004453.01.T01:intron | 30.0% |
| AAACAAACCTTTCTTCGTTG+AGG | - | Chr1:78198166-78198185 | None:intergenic | 35.0% | |
| AAATCATATGGTACCAAAGG+TGG | + | Chr1:78199463-78199482 | MsG0180004453.01.T01:CDS | 35.0% | |
| AATCATATGGTACCAAAGGT+GGG | + | Chr1:78199464-78199483 | MsG0180004453.01.T01:CDS | 35.0% | |
| ACGATGAAGCATGAGAAAAA+AGG | + | Chr1:78198783-78198802 | MsG0180004453.01.T01:CDS | 35.0% | |
| ACTTGATGAGAAGGAATTTG+GGG | + | Chr1:78200140-78200159 | MsG0180004453.01.T01:CDS | 35.0% | |
| AGATCGCCATTGGATTATTA+TGG | + | Chr1:78198117-78198136 | MsG0180004453.01.T01:exon | 35.0% | |
| AGTTCGGTTTAGTTACCAAA+AGG | - | Chr1:78200224-78200243 | None:intergenic | 35.0% | |
| ATGCGGTACTTACATCATAA+AGG | - | Chr1:78200529-78200548 | None:intergenic | 35.0% | |
| CTCAAATCATATGGTACCAA+AGG | + | Chr1:78199460-78199479 | MsG0180004453.01.T01:CDS | 35.0% | |
| GAAAGAGGAAATGAGTATAC+CGG | - | Chr1:78197962-78197981 | None:intergenic | 35.0% | |
| GAGTAACAACAAATTAAGCC+AGG | - | Chr1:78198548-78198567 | None:intergenic | 35.0% | |
| GATAATAAAGTCGCTGCAAA+AGG | + | Chr1:78198605-78198624 | MsG0180004453.01.T01:CDS | 35.0% | |
| GCAATCCCAATTAGTCAATT+TGG | + | Chr1:78199943-78199962 | MsG0180004453.01.T01:intron | 35.0% | |
| GGTAAAGCATAGACTAAATG+TGG | - | Chr1:78199597-78199616 | None:intergenic | 35.0% | |
| GTGAGATTAAGTTTGCCTAA+TGG | + | Chr1:78199044-78199063 | MsG0180004453.01.T01:intron | 35.0% | |
| GTTAATGCATTGCTTGACTA+TGG | + | Chr1:78201156-78201175 | MsG0180004453.01.T01:intron | 35.0% | |
| TAATAAAGTCGCTGCAAAAG+GGG | + | Chr1:78198607-78198626 | MsG0180004453.01.T01:CDS | 35.0% | |
| TACCTCTTAACTTCTACCTT+TGG | - | Chr1:78198312-78198331 | None:intergenic | 35.0% | |
| TACTCCTGCTTTAGCAAAAA+GGG | - | Chr1:78199341-78199360 | None:intergenic | 35.0% | |
| TGCGGTACTTACATCATAAA+GGG | - | Chr1:78200528-78200547 | None:intergenic | 35.0% | |
| TTATCTTTACCATCAGCATC+TGG | - | Chr1:78200386-78200405 | None:intergenic | 35.0% | |
| TTGTTAAATAGCAGCGCTAT+AGG | - | Chr1:78198516-78198535 | None:intergenic | 35.0% | |
| TTTAACCTAACTAACTCGAG+TGG | - | Chr1:78200045-78200064 | None:intergenic | 35.0% | |
| TTTAGTCTATGCTTTACCAC+AGG | + | Chr1:78199599-78199618 | MsG0180004453.01.T01:intron | 35.0% | |
| ! | ATTTTCCACTCGAGTTAGTT+AGG | + | Chr1:78200037-78200056 | MsG0180004453.01.T01:intron | 35.0% |
| ! | CGATAAAGCATTCATAGGAA+TGG | - | Chr1:78199242-78199261 | None:intergenic | 35.0% |
| ! | GAAATATTGATTGCTGCTTC+AGG | + | Chr1:78199768-78199787 | MsG0180004453.01.T01:intron | 35.0% |
| ! | GTCACATCTTACTTGTTTCT+TGG | + | Chr1:78199184-78199203 | MsG0180004453.01.T01:intron | 35.0% |
| ! | TGGTAACTAAACCGAACTTT+TGG | + | Chr1:78200226-78200245 | MsG0180004453.01.T01:intron | 35.0% |
| ! | TTGGTCGATAAAGCATTCAT+AGG | - | Chr1:78199247-78199266 | None:intergenic | 35.0% |
| !! | CATTCTCAAGTTGTTTTGCA+CGG | - | Chr1:78199112-78199131 | None:intergenic | 35.0% |
| !! | GAGGAACATTTTCTAAGAAC+AGG | + | Chr1:78199079-78199098 | MsG0180004453.01.T01:intron | 35.0% |
| !! | GGTGCTTTTGGTATTGAAAT+TGG | + | Chr1:78198817-78198836 | MsG0180004453.01.T01:intron | 35.0% |
| !! | GTATTGTATGTTGGTGCTTT+TGG | + | Chr1:78198805-78198824 | MsG0180004453.01.T01:intron | 35.0% |
| !!! | AAAGTTTTGTTCTGCACTTG+GGG | + | Chr1:78201294-78201313 | MsG0180004453.01.T01:CDS | 35.0% |
| !!! | CAAAAGTTTTGTTCTGCACT+TGG | + | Chr1:78201292-78201311 | MsG0180004453.01.T01:CDS | 35.0% |
| AAAATGGTTGCAGGTTTCCT+CGG | + | Chr1:78201222-78201241 | MsG0180004453.01.T01:intron | 40.0% | |
| AAAGTATGTGAGATGCCTAG+AGG | + | Chr1:78200849-78200868 | MsG0180004453.01.T01:intron | 40.0% | |
| ACTTGCAGTTACACACACAT+AGG | - | Chr1:78199722-78199741 | None:intergenic | 40.0% | |
| AGGATTCCTGGAATTTACCT+GGG | - | Chr1:78199849-78199868 | None:intergenic | 40.0% | |
| AGTTAGTCGTGGTCAAATGA+TGG | + | Chr1:78201066-78201085 | MsG0180004453.01.T01:intron | 40.0% | |
| ATCCAATAGTTCATCCCTTG+AGG | + | Chr1:78199806-78199825 | MsG0180004453.01.T01:CDS | 40.0% | |
| ATGCAATAGAGAGGTGGAAT+GGG | + | Chr1:78201092-78201111 | MsG0180004453.01.T01:intron | 40.0% | |
| CATATACATTGTGACGTCGA+AGG | - | Chr1:78198643-78198662 | None:intergenic | 40.0% | |
| CCTGAATATGGTTTCCTCAA+GGG | - | Chr1:78199823-78199842 | None:intergenic | 40.0% | |
| CTAATGGAGATGAGCAATTG+AGG | + | Chr1:78199060-78199079 | MsG0180004453.01.T01:intron | 40.0% | |
| CTACTCCTGCTTTAGCAAAA+AGG | - | Chr1:78199342-78199361 | None:intergenic | 40.0% | |
| CTCAATTGCTCATCTCCATT+AGG | - | Chr1:78199062-78199081 | None:intergenic | 40.0% | |
| GCACCAAAAGCAATTTGTGA+AGG | - | Chr1:78199421-78199440 | None:intergenic | 40.0% | |
| GCAGCGAGAGTAAATTATTG+TGG | - | Chr1:78199555-78199574 | None:intergenic | 40.0% | |
| GGTAAAGTTAAGCTGAAGCT+TGG | + | Chr1:78200497-78200516 | MsG0180004453.01.T01:CDS | 40.0% | |
| TAAACGGAAAACGGAGAAAG+AGG | - | Chr1:78197977-78197996 | None:intergenic | 40.0% | |
| TAATTGGGATTGCTCAACTC+TGG | - | Chr1:78199936-78199955 | None:intergenic | 40.0% | |
| TCAATGGTATGTCTCCATCA+AGG | + | Chr1:78199509-78199528 | MsG0180004453.01.T01:intron | 40.0% | |
| TGCCAAAGGTAGAAGTTAAG+AGG | + | Chr1:78198307-78198326 | MsG0180004453.01.T01:CDS | 40.0% | |
| TGCGCTTTCATCATAAGTTC+TGG | - | Chr1:78200178-78200197 | None:intergenic | 40.0% | |
| TGTAGGAGAATGCGATGAAT+AGG | + | Chr1:78198760-78198779 | MsG0180004453.01.T01:intron | 40.0% | |
| TTCCTCAAGGGATGAACTAT+TGG | - | Chr1:78199811-78199830 | None:intergenic | 40.0% | |
| ! | AGCATTTTGCCAATTAAGCC+AGG | - | Chr1:78200464-78200483 | None:intergenic | 40.0% |
| ! | ATTTTGCCAATTAAGCCAGG+TGG | - | Chr1:78200461-78200480 | None:intergenic | 40.0% |
| ! | TGATGGATGATGCAATAGAG+AGG | + | Chr1:78201083-78201102 | MsG0180004453.01.T01:intron | 40.0% |
| !! | GTTTTGAGCAAATTGTTGGC+AGG | + | Chr1:78200295-78200314 | MsG0180004453.01.T01:intron | 40.0% |
| !! | TCACAAATTGCTTTTGGTGC+TGG | + | Chr1:78199421-78199440 | MsG0180004453.01.T01:CDS | 40.0% |
| !! | TCTGCTTTTGCAGAGATCTA+AGG | + | Chr1:78199309-78199328 | MsG0180004453.01.T01:intron | 40.0% |
| AAACCATATTCAGGCAACCC+AGG | + | Chr1:78199829-78199848 | MsG0180004453.01.T01:CDS | 45.0% | |
| AAAGCCTCCTCAACGAAGAA+AGG | + | Chr1:78198156-78198175 | MsG0180004453.01.T01:CDS | 45.0% | |
| AAATGGTTGCAGGTTTCCTC+GGG | + | Chr1:78201223-78201242 | MsG0180004453.01.T01:intron | 45.0% | |
| ACTTCTACCTTTGGCACTCT+AGG | - | Chr1:78198303-78198322 | None:intergenic | 45.0% | |
| CAAACCTTTCTTCGTTGAGG+AGG | - | Chr1:78198163-78198182 | None:intergenic | 45.0% | |
| CCCTTGAGGAAACCATATTC+AGG | + | Chr1:78199820-78199839 | MsG0180004453.01.T01:CDS | 45.0% | |
| CTCTAGACATCTAAGCCTCT+AGG | - | Chr1:78200867-78200886 | None:intergenic | 45.0% | |
| GAGGATTCCTGGAATTTACC+TGG | - | Chr1:78199850-78199869 | None:intergenic | 45.0% | |
| GATGCAATAGAGAGGTGGAA+TGG | + | Chr1:78201091-78201110 | MsG0180004453.01.T01:intron | 45.0% | |
| GCCTGAATATGGTTTCCTCA+AGG | - | Chr1:78199824-78199843 | None:intergenic | 45.0% | |
| GTGTGATGATCGGAAAAGGA+GGG | - | Chr1:78197931-78197950 | None:intergenic | 45.0% | |
| TCACTCTGTACACTTACCCA+TGG | - | Chr1:78199650-78199669 | None:intergenic | 45.0% | |
| TGATGAGAAGGAATTTGGGG+AGG | + | Chr1:78200143-78200162 | MsG0180004453.01.T01:CDS | 45.0% | |
| TGCAATAGAGAGGTGGAATG+GGG | + | Chr1:78201093-78201112 | MsG0180004453.01.T01:intron | 45.0% | |
| TGGATGATGCAATAGAGAGG+TGG | + | Chr1:78201086-78201105 | MsG0180004453.01.T01:intron | 45.0% | |
| TTACCTGGGTTGCCTGAATA+TGG | - | Chr1:78199835-78199854 | None:intergenic | 45.0% | |
| TTCAAATTCCGCTACACTGC+AGG | + | Chr1:78198490-78198509 | MsG0180004453.01.T01:intron | 45.0% | |
| TTGAGCAAATTGTTGGCAGG+AGG | + | Chr1:78200298-78200317 | MsG0180004453.01.T01:intron | 45.0% | |
| TTTCTGCAGCGAAGTTGTTG+AGG | + | Chr1:78198580-78198599 | MsG0180004453.01.T01:intron | 45.0% | |
| ! | AAGTTGAATGACTTGCCACC+TGG | + | Chr1:78200443-78200462 | MsG0180004453.01.T01:CDS | 45.0% |
| ! | CTCCTTTTCCGATCATCACA+CGG | + | Chr1:78197930-78197949 | MsG0180004453.01.T01:five_prime_UTR | 45.0% |
| ! | GATGCCCTTTTTGCTAAAGC+AGG | + | Chr1:78199334-78199353 | MsG0180004453.01.T01:intron | 45.0% |
| !! | CAAGTTTGCTACTGTAACCC+CGG | + | Chr1:78201324-78201343 | MsG0180004453.01.T01:CDS | 45.0% |
| !!! | CAAATTGCTTTTGGTGCTGG+AGG | + | Chr1:78199424-78199443 | MsG0180004453.01.T01:CDS | 45.0% |
| !!! | TATATTTATTATATTTTTGT+AGG | + | Chr1:78198743-78198762 | MsG0180004453.01.T01:intron | 5.0% |
| !!! | TTTTTGTTATTTTTTTAAAA+TGG | + | Chr1:78201206-78201225 | MsG0180004453.01.T01:intron | 5.0% |
| AGGCAACCCAGGTAAATTCC+AGG | + | Chr1:78199840-78199859 | MsG0180004453.01.T01:intron | 50.0% | |
| ATAGAGAGGTGGAATGGGGT+AGG | + | Chr1:78201097-78201116 | MsG0180004453.01.T01:intron | 50.0% | |
| ATGAAGAACGCACTTGCCTC+TGG | - | Chr1:78200329-78200348 | None:intergenic | 50.0% | |
| CACCGTGTGATGATCGGAAA+AGG | - | Chr1:78197935-78197954 | None:intergenic | 50.0% | |
| CGTGTGATGATCGGAAAAGG+AGG | - | Chr1:78197932-78197951 | None:intergenic | 50.0% | |
| GACTTGCCACCTGGCTTAAT+TGG | + | Chr1:78200452-78200471 | MsG0180004453.01.T01:CDS | 50.0% | |
| GATCATCACACGGTGGTTTC+CGG | + | Chr1:78197940-78197959 | MsG0180004453.01.T01:five_prime_UTR | 50.0% | |
| GATGGTAAAGATAAGCGCCC+TGG | + | Chr1:78200392-78200411 | MsG0180004453.01.T01:CDS | 50.0% | |
| GGAAACCACCGTGTGATGAT+CGG | - | Chr1:78197941-78197960 | None:intergenic | 50.0% | |
| TCAAGTGCGGCATCTATGTC+CGG | - | Chr1:78201346-78201365 | None:intergenic | 50.0% | |
| TCTACCTTTGGCACTCTAGG+AGG | - | Chr1:78198300-78198319 | None:intergenic | 50.0% | |
| TGAAGAACGCACTTGCCTCT+GGG | - | Chr1:78200328-78200347 | None:intergenic | 50.0% | |
| TTCACTCTTGCTCCCACCTT+TGG | - | Chr1:78199479-78199498 | None:intergenic | 50.0% | |
| TTCTTTCTCAGTCACGCCTG+TGG | - | Chr1:78199618-78199637 | None:intergenic | 50.0% | |
| ! | ACTCTAGGAGGTGGAGCTTT+AGG | - | Chr1:78198288-78198307 | None:intergenic | 50.0% |
| ! | AGCAGTGGAGCTTGACCTTT+TGG | + | Chr1:78200206-78200225 | MsG0180004453.01.T01:CDS | 50.0% |
| ! | CTTTTCCGATCATCACACGG+TGG | + | Chr1:78197933-78197952 | MsG0180004453.01.T01:five_prime_UTR | 50.0% |
| AAGCGCAGCAAGTTCAGCAG+TGG | + | Chr1:78200191-78200210 | MsG0180004453.01.T01:CDS | 55.0% | |
| AAGCGCCCTGGAGGTTATAG+AGG | + | Chr1:78200404-78200423 | MsG0180004453.01.T01:CDS | 55.0% | |
| AAGTGCGGCATCTATGTCCG+GGG | - | Chr1:78201344-78201363 | None:intergenic | 55.0% | |
| AGTCGCTGCAAAAGGGGTTC+AGG | + | Chr1:78198613-78198632 | MsG0180004453.01.T01:CDS | 55.0% | |
| ATCGGAAAAGGAGGGACTGC+AGG | - | Chr1:78197923-78197942 | None:intergenic | 55.0% | |
| CAAGTGCGGCATCTATGTCC+GGG | - | Chr1:78201345-78201364 | None:intergenic | 55.0% | |
| CCCTGGAGGTTATAGAGGTG+CGG | + | Chr1:78200409-78200428 | MsG0180004453.01.T01:CDS | 55.0% | |
| CCGCACCTCTATAACCTCCA+GGG | - | Chr1:78200412-78200431 | None:intergenic | 55.0% | |
| CTGCAGCGAAGTTGTTGAGG+AGG | + | Chr1:78198583-78198602 | MsG0180004453.01.T01:intron | 55.0% | |
| GCTATAGGCCTGCAGTGTAG+CGG | - | Chr1:78198501-78198520 | None:intergenic | 55.0% | |
| GGGGTAGGCTAGGCTATTCA+TGG | + | Chr1:78201112-78201131 | MsG0180004453.01.T01:intron | 55.0% | |
| GGTAAAGATAAGCGCCCTGG+AGG | + | Chr1:78200395-78200414 | MsG0180004453.01.T01:CDS | 55.0% | |
| TTGGCAGGAGGAAAACCCAG+AGG | + | Chr1:78200310-78200329 | MsG0180004453.01.T01:intron | 55.0% | |
| ! | ACCTTTGGCACTCTAGGAGG+TGG | - | Chr1:78198297-78198316 | None:intergenic | 55.0% |
| ! | TCCACCTCCTAGAGTGCCAA+AGG | + | Chr1:78198293-78198312 | MsG0180004453.01.T01:CDS | 55.0% |
| ! | TTTTGACGGAGGCTTGACGC+AGG | - | Chr1:78197878-78197897 | None:intergenic | 55.0% |
| !! | CGTGGGAGAGGAGGTTTTGA+CGG | - | Chr1:78197892-78197911 | None:intergenic | 55.0% |
| GACTGCAGGCGGAAAGACGT+GGG | - | Chr1:78197909-78197928 | None:intergenic | 60.0% | |
| GAGGTGGAATGGGGTAGGCT+AGG | + | Chr1:78201102-78201121 | MsG0180004453.01.T01:intron | 60.0% | |
| GCCGCACCTCTATAACCTCC+AGG | - | Chr1:78200413-78200432 | None:intergenic | 60.0% | |
| GGAAAAGGAGGGACTGCAGG+CGG | - | Chr1:78197920-78197939 | None:intergenic | 60.0% | |
| ! | ATAGAGGTGCGGCGAAGCTC+TGG | + | Chr1:78200420-78200439 | MsG0180004453.01.T01:CDS | 60.0% |
| !! | GGGAGAGGAGGTTTTGACGG+AGG | - | Chr1:78197889-78197908 | None:intergenic | 60.0% |
| CAGGCGGAAAGACGTGGGAG+AGG | - | Chr1:78197904-78197923 | None:intergenic | 65.0% | |
| CGGAGGCTTGACGCAGGAGA+CGG | - | Chr1:78197872-78197891 | None:intergenic | 65.0% | |
| GCGGAAAGACGTGGGAGAGG+AGG | - | Chr1:78197901-78197920 | None:intergenic | 65.0% | |
| GGACTGCAGGCGGAAAGACG+TGG | - | Chr1:78197910-78197929 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 78197858 | 78201513 | 78197858 | ID=MsG0180004453.01;Name=MsG0180004453.01 |
| Chr1 | mRNA | 78197858 | 78201513 | 78197858 | ID=MsG0180004453.01.T01;Parent=MsG0180004453.01;Name=MsG0180004453.01.T01;_AED=0.49;_eAED=0.50;_QI=127|0.9|0.90|1|0.9|0.81|11|123|293 |
| Chr1 | exon | 78197858 | 78197961 | 78197858 | ID=MsG0180004453.01.T01:exon:45330;Parent=MsG0180004453.01.T01 |
| Chr1 | exon | 78198113 | 78198177 | 78198113 | ID=MsG0180004453.01.T01:exon:45331;Parent=MsG0180004453.01.T01 |
| Chr1 | exon | 78198273 | 78198328 | 78198273 | ID=MsG0180004453.01.T01:exon:45332;Parent=MsG0180004453.01.T01 |
| Chr1 | exon | 78198589 | 78198670 | 78198589 | ID=MsG0180004453.01.T01:exon:45333;Parent=MsG0180004453.01.T01 |
| Chr1 | exon | 78198765 | 78198804 | 78198765 | ID=MsG0180004453.01.T01:exon:45334;Parent=MsG0180004453.01.T01 |
| Chr1 | exon | 78199413 | 78199514 | 78199413 | ID=MsG0180004453.01.T01:exon:45335;Parent=MsG0180004453.01.T01 |
| Chr1 | exon | 78199621 | 78199652 | 78199621 | ID=MsG0180004453.01.T01:exon:45336;Parent=MsG0180004453.01.T01 |
| Chr1 | exon | 78199790 | 78199850 | 78199790 | ID=MsG0180004453.01.T01:exon:45337;Parent=MsG0180004453.01.T01 |
| Chr1 | exon | 78200136 | 78200227 | 78200136 | ID=MsG0180004453.01.T01:exon:45338;Parent=MsG0180004453.01.T01 |
| Chr1 | exon | 78200317 | 78200535 | 78200317 | ID=MsG0180004453.01.T01:exon:45339;Parent=MsG0180004453.01.T01 |
| Chr1 | exon | 78201235 | 78201513 | 78201235 | ID=MsG0180004453.01.T01:exon:45340;Parent=MsG0180004453.01.T01 |
| Chr1 | five_prime_UTR | 78197858 | 78197961 | 78197858 | ID=MsG0180004453.01.T01:five_prime_utr;Parent=MsG0180004453.01.T01 |
| Chr1 | five_prime_UTR | 78198113 | 78198135 | 78198113 | ID=MsG0180004453.01.T01:five_prime_utr;Parent=MsG0180004453.01.T01 |
| Chr1 | CDS | 78198136 | 78198177 | 78198136 | ID=MsG0180004453.01.T01:cds;Parent=MsG0180004453.01.T01 |
| Chr1 | CDS | 78198273 | 78198328 | 78198273 | ID=MsG0180004453.01.T01:cds;Parent=MsG0180004453.01.T01 |
| Chr1 | CDS | 78198589 | 78198670 | 78198589 | ID=MsG0180004453.01.T01:cds;Parent=MsG0180004453.01.T01 |
| Chr1 | CDS | 78198765 | 78198804 | 78198765 | ID=MsG0180004453.01.T01:cds;Parent=MsG0180004453.01.T01 |
| Chr1 | CDS | 78199413 | 78199514 | 78199413 | ID=MsG0180004453.01.T01:cds;Parent=MsG0180004453.01.T01 |
| Chr1 | CDS | 78199621 | 78199652 | 78199621 | ID=MsG0180004453.01.T01:cds;Parent=MsG0180004453.01.T01 |
| Chr1 | CDS | 78199790 | 78199850 | 78199790 | ID=MsG0180004453.01.T01:cds;Parent=MsG0180004453.01.T01 |
| Chr1 | CDS | 78200136 | 78200227 | 78200136 | ID=MsG0180004453.01.T01:cds;Parent=MsG0180004453.01.T01 |
| Chr1 | CDS | 78200317 | 78200535 | 78200317 | ID=MsG0180004453.01.T01:cds;Parent=MsG0180004453.01.T01 |
| Chr1 | CDS | 78201235 | 78201390 | 78201235 | ID=MsG0180004453.01.T01:cds;Parent=MsG0180004453.01.T01 |
| Chr1 | three_prime_UTR | 78201391 | 78201513 | 78201391 | ID=MsG0180004453.01.T01:three_prime_utr;Parent=MsG0180004453.01.T01 |
| Gene Sequence |
| Protein sequence |
