AlfalfaGEDB | MsG0580024329.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024329.01

KEGG: K24543
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024329.01.T01	PNX71114.1	72.973	111	18	3	1	101	1	109	5.08E-42	147

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024329.01.T01	Q43078	69.828	116	17	3	1	101	1	113	2.67E-40	144

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024329.01.T01	A0A2K3KXV2	72.973	111	18	3	1	101	1	109	2.43e-42	147

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048059.01	MsG0580024329.01	0.852262	5.181202e-61	1.076633e-57
MsG0080048528.01	MsG0580024329.01	0.841394	4.879204e-58	7.160054e-55
MsG0080048776.01	MsG0580024329.01	0.907767	3.547450e-81	6.384767e-77
MsG0080048777.01	MsG0580024329.01	0.804165	2.462891e-49	1.260974e-46
MsG0080048801.01	MsG0580024329.01	0.814812	1.273218e-51	8.629750e-49
MsG0080048887.01	MsG0580024329.01	0.822143	2.773350e-53	2.301819e-50
MsG0080048896.01	MsG0580024329.01	0.830789	2.410175e-55	2.565670e-52
MsG0080048900.01	MsG0580024329.01	0.850922	1.241258e-60	2.470318e-57
MsG0080048909.01	MsG0580024329.01	0.891773	2.923838e-74	2.599089e-70
MsG0080048917.01	MsG0580024329.01	0.804215	2.404573e-49	1.232662e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024329.01.T01	MTR_5g009110	92.233	103	5	2	1	101	1	102	3.15e-43	148
MsG0580024329.01.T01	MTR_5g009110	92.233	103	5	2	1	101	1	102	2.27e-42	147

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024329.01.T01	AT4G15110	56.098	82	29	2	21	101	34	109	5.39e-23	94.4

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Find 38 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAAAGGAAAATGTTA+AGG	0.429638	5:+3472565	None:intergenic
AACGCCTTTCTTCTACCATC+AGG	0.483384	5:-3472361	MsG0580024329.01.T01:intron
AAGACCTGATGGTAGAAGAA+AGG	0.558346	5:+3472357	None:intergenic
ACGTTCAATAATATCCTCAT+AGG	0.420134	5:+3471580	None:intergenic
ACTATATGATTGGTTCTTAG+AGG	0.322038	5:-3472073	MsG0580024329.01.T01:intron
AGAATATGTCTTGCAACAAT+GGG	0.502788	5:+3471495	None:intergenic
AGATACAACGACAAATGCTT+TGG	0.422931	5:+3471521	None:intergenic
ATAATAATGTAGATGTCAAG+CGG	0.609412	5:-3472253	MsG0580024329.01.T01:intron
ATCTCCACCGTCACACTCAC+CGG	0.540695	5:-3472437	MsG0580024329.01.T01:CDS
ATTACATTACACTGAATAAA+AGG	0.273336	5:+3472547	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGTTCAATAATATCCTCAT+AGG	+	Chr5:3472468-3472487	None:intergenic	30.0%
AGAATATGTCTTGCAACAAT+GGG	+	Chr5:3472553-3472572	None:intergenic	30.0%
TCATATAGTGAGAAAAAGAG+AGG	+	Chr5:3471961-3471980	None:intergenic	30.0%
TTGTGTTCATAAGCTCTATT+TGG	+	Chr5:3472243-3472262	None:intergenic	30.0%
TTTCCACTAGTATCTTTCAA+CGG	-	Chr5:3471529-3471548	MsG0580024329.01.T01:CDS	30.0%
AGATACAACGACAAATGCTT+TGG	+	Chr5:3472527-3472546	None:intergenic	35.0%
ATTTCAACTTACGGTCTGTT+TGG	-	Chr5:3472023-3472042	MsG0580024329.01.T01:intron	35.0%
CAGAATATGTCTTGCAACAA+TGG	+	Chr5:3472554-3472573	None:intergenic	35.0%
GATACAACGACAAATGCTTT+GGG	+	Chr5:3472526-3472545	None:intergenic	35.0%
TATTATTGAACGTGACAGCA+TGG	-	Chr5:3472475-3472494	MsG0580024329.01.T01:five_prime_UTR	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	3471463	3472604	3471463	ID=MsG0580024329.01;Name=MsG0580024329.01
Chr5	mRNA	3471463	3472604	3471463	ID=MsG0580024329.01.T01;Parent=MsG0580024329.01;Name=MsG0580024329.01.T01;_AED=0.48;_eAED=0.61;_QI=130\|0.5\|0.66\|1\|0\|0\|3\|0\|148
Chr5	exon	3471463	3471606	3471463	ID=MsG0580024329.01.T01:exon:1128;Parent=MsG0580024329.01.T01
Chr5	exon	3472074	3472263	3472074	ID=MsG0580024329.01.T01:exon:1127;Parent=MsG0580024329.01.T01
Chr5	exon	3472362	3472604	3472362	ID=MsG0580024329.01.T01:exon:1126;Parent=MsG0580024329.01.T01
Chr5	five_prime_UTR	3472475	3472604	3472475	ID=MsG0580024329.01.T01:five_prime_utr;Parent=MsG0580024329.01.T01
Chr5	CDS	3472362	3472474	3472362	ID=MsG0580024329.01.T01:cds;Parent=MsG0580024329.01.T01
Chr5	CDS	3472074	3472263	3472074	ID=MsG0580024329.01.T01:cds;Parent=MsG0580024329.01.T01
Chr5	CDS	3471463	3471606	3471463	ID=MsG0580024329.01.T01:cds;Parent=MsG0580024329.01.T01

Gene Sequence

>MsG0580024329.01.T01

ATGGTTGCCGTCGCTATCTCCACCGTCACACTCACCGGTGCAAATCTTCACACCAGATTTCTTCATCCCTCTCGCTTTTCTTCTCATTCCAAACGCCTTTCTTCTACCATCAGATGTCAAGCGGTTAACAGTGATAAGAAGAAACAAAGTAGCAGTAGTCGAAATGTGTTTGACAACGCCAGCAATCTTTTAACAAACTTGTTAAGCGGCGGAAGTTTAGGGAATATGCCCATAGCTGAAGGTGCTGTCACCGATTTGTTTGATCGACCTCTCTTTTTCTCACTATATGATTGGTTCTTAGAGTTATCCTATGAGGATATTATTGAACGTGACAGCATGGCTCTGTGTATAAACTTGCGTTTGGTCCCAAAGCATTTGTCGTTGTATCTGATCCCATTGTTGCAAGACATATTCTGCGAGAAAATGCCTTTTCTTATGACAAGGTAA

Protein sequence

>MsG0580024329.01.T01

MVAVAISTVTLTGANLHTRFLHPSRFSSHSKRLSSTIRCQAVNSDKKKQSSSSRNVFDNASNLLTNLLSGGSLGNMPIAEGAVTDLFDRPLFFSLYDWFLELSYEDIIERDSMALCINLRLVPKHLSLYLIPLLQDIFCEKMPFLMTR*