AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040429.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040429.01.T01 MTR_7g090150 99.398 498 3 0 1 498 1 498 0.0 1025
MsG0780040429.01.T01 MTR_2g086700 51.731 491 219 3 7 493 20 496 0.0 525
MsG0780040429.01.T01 MTR_2g086730 53.515 441 197 2 55 493 50 484 2.01e-176 505
MsG0780040429.01.T01 MTR_2g040060 38.702 447 253 10 48 479 72 512 1.15e-89 284
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040429.01.T01 AT3G10230 77.866 506 99 5 1 498 1 501 0.0 822
MsG0780040429.01.T01 AT3G10230 82.114 369 64 1 132 498 1 369 0.0 652
MsG0780040429.01.T01 AT5G57030 37.947 419 240 8 82 496 109 511 2.43e-91 288

Find 124 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTCAAGAAGGAAAATT+TGG 0.155368 7:-77401093 MsG0780040429.01.T01:CDS
CCAGGTTGCGTACGGGATTT+TGG 0.157916 7:-77400568 MsG0780040429.01.T01:CDS
AACTCTTCCTTTGGTAAATA+TGG 0.175922 7:-77399827 MsG0780040429.01.T01:CDS
CTTCCTGAACTCTTTACTTT+TGG 0.183142 7:-77399907 MsG0780040429.01.T01:CDS
GGCTAGTAGCAGTGCCCTTT+TGG 0.208653 7:-77401126 MsG0780040429.01.T01:CDS
TTGATTTGGCCTAATAATTA+TGG 0.221104 7:-77400927 MsG0780040429.01.T01:CDS
CAAAGGGAGTTCTTCTGTTT+TGG 0.262942 7:-77400039 MsG0780040429.01.T01:CDS
ACCTGGTAACCTGGATTATA+CGG 0.273829 7:+77400585 None:intergenic
GTTGCTAGATTGAAACATTT+GGG 0.274386 7:-77400330 MsG0780040429.01.T01:CDS
GGCCTAATAATTATGGTGTT+TGG 0.289738 7:-77400920 MsG0780040429.01.T01:CDS
GCCTAATAATTATGGTGTTT+GGG 0.302972 7:-77400919 MsG0780040429.01.T01:CDS
CAAAACCATGTAGTTAGATT+TGG 0.307965 7:-77401173 MsG0780040429.01.T01:CDS
TATCGACGATAAAACGAAAA+AGG 0.308321 7:-77400829 MsG0780040429.01.T01:CDS
AATGCTATTGTTCAGTATCT+TGG 0.317451 7:-77400138 MsG0780040429.01.T01:CDS
GCATCCTTCAACCGGGTATA+TGG 0.320566 7:-77400196 MsG0780040429.01.T01:CDS
GTTACAAATCAACATCGATT+TGG 0.327697 7:+77400683 None:intergenic
ACGAAGTATCTGCACGAGTA+TGG 0.331576 7:-77400092 MsG0780040429.01.T01:CDS
ACCTCTCTTGTAGCGCGCCC+TGG 0.332447 7:-77400384 MsG0780040429.01.T01:CDS
TACATCTAGGCTAGAGATAA+TGG 0.342117 7:-77399857 MsG0780040429.01.T01:CDS
GGCCAAATCAATCTAGGGTT+TGG 0.347108 7:+77400939 None:intergenic
AGTTGCTAGATTGAAACATT+TGG 0.350766 7:-77400331 MsG0780040429.01.T01:CDS
ATCCAAACCCTAGATTGATT+TGG 0.351762 7:-77400941 MsG0780040429.01.T01:CDS
ACAACTCTTTGAGGGAGAAC+TGG 0.355370 7:+77400246 None:intergenic
GACCTTATGGTAGGGTTAAT+AGG 0.359349 7:-77400797 MsG0780040429.01.T01:CDS
TTATTAGGCCAAATCAATCT+AGG 0.360667 7:+77400933 None:intergenic
TTAATCTGGAACCTCACTAT+TGG 0.364288 7:-77399957 MsG0780040429.01.T01:CDS
ACTGTTGTTCTTGATGCTAC+TGG 0.365790 7:-77400639 MsG0780040429.01.T01:CDS
TTGTAGCGCGCCCTGGGTTA+CGG 0.374753 7:-77400377 MsG0780040429.01.T01:CDS
CTTATGCTTCAAATACATCT+AGG 0.377469 7:-77399870 MsG0780040429.01.T01:CDS
CAGTATCTTGGTTCTGATAG+AGG 0.380205 7:-77400126 MsG0780040429.01.T01:CDS
AAGGATCTTGATAGACCTTA+TGG 0.380637 7:-77400810 MsG0780040429.01.T01:CDS
CACGAGTATGGAAAGACTTA+TGG 0.395545 7:-77400080 MsG0780040429.01.T01:CDS
AAATATCTTGGTTGACGAAA+AGG 0.397851 7:+77400416 None:intergenic
CAACAATAGGAGCTGCAGCC+AGG 0.404217 7:+77400163 None:intergenic
GGGATGGTGCATCCTTCAAC+CGG 0.404444 7:-77400204 MsG0780040429.01.T01:CDS
TAACGACGGTGTTACAGTTC+AGG 0.404820 7:-77400664 MsG0780040429.01.T01:CDS
GGTTTCTTCGAGAAATATCT+TGG 0.410625 7:+77400404 None:intergenic
CCTTTGTATGATTCAACAAA+AGG 0.410627 7:-77401059 MsG0780040429.01.T01:CDS
GTTCTCCCTCAAAGAGTTGT+TGG 0.414753 7:-77400243 MsG0780040429.01.T01:CDS
CTTTGTCGTCTCCTTTCGAT+TGG 0.416445 7:+77400057 None:intergenic
GGCTAAGGGAACTCTTCCTT+TGG 0.432543 7:-77399836 MsG0780040429.01.T01:CDS
GCACAGCAGGTTTCTGAGGC+AGG 0.434795 7:-77400984 MsG0780040429.01.T01:CDS
CTGCTACTAGCCCTCAAAAC+TGG 0.436438 7:+77401137 None:intergenic
CCGTACGCAACCTGGTAACC+TGG 0.438830 7:+77400576 None:intergenic
ACCCAAACACCATAATTATT+AGG 0.454783 7:+77400918 None:intergenic
TCACCAAGCTAAGGTTATCA+AGG 0.457559 7:-77400721 MsG0780040429.01.T01:CDS
AGGTCTTGCTGTAGCACAGC+AGG 0.460364 7:-77400997 MsG0780040429.01.T01:CDS
AATCCAAAAGTAAAGAGTTC+AGG 0.464478 7:+77399904 None:intergenic
CTACAAAAGTGTATATCAAA+TGG 0.464823 7:-77400753 MsG0780040429.01.T01:CDS
TGTCTTGATAAAACTTGGTC+TGG 0.467892 7:-77400864 MsG0780040429.01.T01:CDS
CGATTCCAACAACTCTTTGA+GGG 0.468397 7:+77400238 None:intergenic
GTTGTGGGAGGTGGTCCTGC+AGG 0.483787 7:-77401017 MsG0780040429.01.T01:CDS
TATTAGGCCAAATCAATCTA+GGG 0.485733 7:+77400934 None:intergenic
ACAATAGCATTGGCAACAAT+AGG 0.487784 7:+77400150 None:intergenic
CCGATTCCAACAACTCTTTG+AGG 0.487934 7:+77400237 None:intergenic
GTTGGAATCGGTGGTACGGC+CGG 0.490658 7:-77400225 MsG0780040429.01.T01:CDS
CCTCTCTTGTAGCGCGCCCT+GGG 0.500520 7:-77400383 MsG0780040429.01.T01:CDS
CCAAAATCCCGTACGCAACC+TGG 0.500737 7:+77400568 None:intergenic
TGTTGTGGATCTTGTAGTTG+TGG 0.501438 7:-77401033 MsG0780040429.01.T01:CDS
CCTCAAAGAGTTGTTGGAAT+CGG 0.502055 7:-77400237 MsG0780040429.01.T01:CDS
CAACTCTTTGAGGGAGAACT+GGG 0.503567 7:+77400247 None:intergenic
TTCAGGAACAAGCTCCAAAA+GGG 0.505564 7:+77401112 None:intergenic
GTTGTGGATCTTGTAGTTGT+GGG 0.506200 7:-77401032 MsG0780040429.01.T01:CDS
ATTCAGGAACAAGCTCCAAA+AGG 0.506558 7:+77401111 None:intergenic
TTGATTGTCTTGATAAAACT+TGG 0.506662 7:-77400869 MsG0780040429.01.T01:CDS
CCAGGTTACCAGGTTGCGTA+CGG 0.508464 7:-77400576 MsG0780040429.01.T01:CDS
GTTACGGATGGATGATATAC+AGG 0.509278 7:-77400361 MsG0780040429.01.T01:CDS
AATATCTTGGTTGACGAAAA+GGG 0.512687 7:+77400417 None:intergenic
AATCGGTGGTACGGCCGGGA+TGG 0.516297 7:-77400220 MsG0780040429.01.T01:CDS
TTACTCAAGCTTGATTTACC+TGG 0.516361 7:-77400006 MsG0780040429.01.T01:CDS
TTGGAATCGGTGGTACGGCC+GGG 0.517262 7:-77400224 MsG0780040429.01.T01:CDS
GCTACCATATACCCGGTTGA+AGG 0.522990 7:+77400192 None:intergenic
AACTGGGAGAGGGCCACCCA+TGG 0.523115 7:+77400263 None:intergenic
TAACCTTGATAACCTTAGCT+TGG 0.525371 7:+77400718 None:intergenic
TATGATAAACCGTATAATCC+AGG 0.525824 7:-77400594 MsG0780040429.01.T01:CDS
TAGGCTAGAGATAATGGCTA+AGG 0.528892 7:-77399851 MsG0780040429.01.T01:CDS
ACCGTATAATCCAGGTTACC+AGG 0.534646 7:-77400586 MsG0780040429.01.T01:CDS
TTCCTATTAACCCTACCATA+AGG 0.535197 7:+77400795 None:intergenic
AACAATAGGAGCTGCAGCCA+GGG 0.539187 7:+77400164 None:intergenic
CACAGCAGGTTTCTGAGGCA+GGG 0.542629 7:-77400983 MsG0780040429.01.T01:CDS
GGCATTGCATACAGAAATGT+AGG 0.542673 7:+77400438 None:intergenic
CAGGTTACCAGGTTGCGTAC+GGG 0.549357 7:-77400575 MsG0780040429.01.T01:CDS
TTGAACCAAATCTAACTACA+TGG 0.551102 7:+77401168 None:intergenic
TGTGCTACAGCAAGACCTGC+AGG 0.552370 7:+77401002 None:intergenic
CTGGAACCTCACTATTGGCA+TGG 0.553554 7:-77399952 MsG0780040429.01.T01:CDS
TGTTAAGTTTCACCAAGCTA+AGG 0.556343 7:-77400730 MsG0780040429.01.T01:CDS
TTTCTGAATAACCATGAAGT+GGG 0.559455 7:+77401228 None:intergenic
AGCGCGCCCTGGGTTACGGA+TGG 0.560047 7:-77400373 MsG0780040429.01.T01:CDS
GGTGGATGAATTTGAAGCGA+TGG 0.563447 7:-77400898 MsG0780040429.01.T01:CDS
CCCAGGGCGCGCTACAAGAG+AGG 0.566724 7:+77400383 None:intergenic
ATCTTGATAGACCTTATGGT+AGG 0.567507 7:-77400806 MsG0780040429.01.T01:CDS
AAGATACTGAACAATAGCAT+TGG 0.568718 7:+77400140 None:intergenic
GATCTTGTAGTTGTGGGAGG+TGG 0.570389 7:-77401026 MsG0780040429.01.T01:CDS
AGTTGTTGGAATCGGTGGTA+CGG 0.572774 7:-77400229 MsG0780040429.01.T01:CDS
CTTTGAGGGAGAACTGGGAG+AGG 0.576024 7:+77400252 None:intergenic
CAAAGAGTTGTTGGAATCGG+TGG 0.576079 7:-77400234 MsG0780040429.01.T01:CDS
ATATCATCCATCCGTAACCC+AGG 0.576251 7:+77400366 None:intergenic
TCTTGATAGACCTTATGGTA+GGG 0.578329 7:-77400805 MsG0780040429.01.T01:CDS
AAGACTTATGGCCAATCGAA+AGG 0.581415 7:-77400068 MsG0780040429.01.T01:CDS
AGACAATGACTTGAAGCTCA+AGG 0.587643 7:-77400478 MsG0780040429.01.T01:CDS
GCTTGTTCCTGAATTCAAGA+AGG 0.588420 7:-77401102 MsG0780040429.01.T01:CDS
GGTTGAAGGATGCACCATCC+CGG 0.589189 7:+77400206 None:intergenic
TGTAGCACAGCAGGTTTCTG+AGG 0.592547 7:-77400988 MsG0780040429.01.T01:CDS
GTGGATCTTGTAGTTGTGGG+AGG 0.592588 7:-77401029 MsG0780040429.01.T01:CDS
AGGCTAGAGATAATGGCTAA+GGG 0.600987 7:-77399850 MsG0780040429.01.T01:CDS
GGTTATCAAGGTTATTCATG+AGG 0.602378 7:-77400709 MsG0780040429.01.T01:CDS
ACTGGGAGAGGGCCACCCAT+GGG 0.604348 7:+77400264 None:intergenic
TTCAACAAAAGGAACTGTTG+TGG 0.605297 7:-77401048 MsG0780040429.01.T01:CDS
AGCTTGATTTACCTGGCACA+AGG 0.608514 7:-77399999 MsG0780040429.01.T01:CDS
AATCGAAAGGAGACGACAAA+GGG 0.608687 7:-77400055 MsG0780040429.01.T01:CDS
CAGTGTGTGATTCCCATGGG+TGG 0.609612 7:-77400276 MsG0780040429.01.T01:CDS
CAATCGAAAGGAGACGACAA+AGG 0.611686 7:-77400056 MsG0780040429.01.T01:CDS
TAATAATTATGGTGTTTGGG+TGG 0.615233 7:-77400916 MsG0780040429.01.T01:CDS
TTGCTAGATTGAAACATTTG+GGG 0.616102 7:-77400329 MsG0780040429.01.T01:CDS
GGTTCTTGCTACCATATACC+CGG 0.623735 7:+77400185 None:intergenic
TTTGAGGGAGAACTGGGAGA+GGG 0.636661 7:+77400253 None:intergenic
TGAGCAGTGTGTGATTCCCA+TGG 0.639377 7:-77400280 MsG0780040429.01.T01:CDS
TTGTTGACCATATTTACCAA+AGG 0.643793 7:+77399820 None:intergenic
GGATGGTGCATCCTTCAACC+GGG 0.645284 7:-77400203 MsG0780040429.01.T01:CDS
TATCATCCATCCGTAACCCA+GGG 0.650423 7:+77400367 None:intergenic
AAGAATCCATGCCAATAGTG+AGG 0.662420 7:+77399946 None:intergenic
GAGCAGTGTGTGATTCCCAT+GGG 0.674056 7:-77400279 MsG0780040429.01.T01:CDS
GTATATGGTAGCAAGAACCC+TGG 0.685651 7:-77400181 MsG0780040429.01.T01:CDS
TCGATGTTGATTTGTAACGA+CGG 0.713911 7:-77400678 MsG0780040429.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTGATAAAATGCTTTTTA+TGG - Chr7:77400550-77400569 MsG0780040429.01.T01:CDS 20.0%
! TGAATTCAAGAAGGAAAATT+TGG - Chr7:77399977-77399996 MsG0780040429.01.T01:CDS 25.0%
! TTGATTGTCTTGATAAAACT+TGG - Chr7:77400201-77400220 MsG0780040429.01.T01:CDS 25.0%
!! AAATTTTCCTTCTTGAATTC+AGG + Chr7:77399978-77399997 None:intergenic 25.0%
!! AGCATTTTATCAACATCAAA+AGG + Chr7:77400545-77400564 None:intergenic 25.0%
!! CTACAAAAGTGTATATCAAA+TGG - Chr7:77400317-77400336 MsG0780040429.01.T01:CDS 25.0%
!! GCATTTTATCAACATCAAAA+GGG + Chr7:77400544-77400563 None:intergenic 25.0%
!!! AAAGAAAAAACCAGTTTTGA+GGG - Chr7:77399923-77399942 MsG0780040429.01.T01:CDS 25.0%
!!! ATAAAATGCTTTTTATGGAC+TGG - Chr7:77400555-77400574 MsG0780040429.01.T01:CDS 25.0%
!!! TTGATTTGGCCTAATAATTA+TGG - Chr7:77400143-77400162 MsG0780040429.01.T01:CDS 25.0%
!!! TTTCGATGCATTTTTTAATC+TGG - Chr7:77401099-77401118 MsG0780040429.01.T01:CDS 25.0%
AAATATCTTGGTTGACGAAA+AGG + Chr7:77400657-77400676 None:intergenic 30.0%
AACTCTTCCTTTGGTAAATA+TGG - Chr7:77401243-77401262 MsG0780040429.01.T01:CDS 30.0%
AAGATACTGAACAATAGCAT+TGG + Chr7:77400933-77400952 None:intergenic 30.0%
AATATCTTGGTTGACGAAAA+GGG + Chr7:77400656-77400675 None:intergenic 30.0%
AATCCAAAAGTAAAGAGTTC+AGG + Chr7:77401169-77401188 None:intergenic 30.0%
AATGCTATTGTTCAGTATCT+TGG - Chr7:77400932-77400951 MsG0780040429.01.T01:CDS 30.0%
ACCCAAACACCATAATTATT+AGG + Chr7:77400155-77400174 None:intergenic 30.0%
AGTTGCTAGATTGAAACATT+TGG - Chr7:77400739-77400758 MsG0780040429.01.T01:CDS 30.0%
CAAAACCATGTAGTTAGATT+TGG - Chr7:77399897-77399916 MsG0780040429.01.T01:CDS 30.0%
CCTTTGTATGATTCAACAAA+AGG - Chr7:77400011-77400030 MsG0780040429.01.T01:CDS 30.0%
CTTATGCTTCAAATACATCT+AGG - Chr7:77401200-77401219 MsG0780040429.01.T01:CDS 30.0%
GCCTAATAATTATGGTGTTT+GGG - Chr7:77400151-77400170 MsG0780040429.01.T01:CDS 30.0%
GTTGCTAGATTGAAACATTT+GGG - Chr7:77400740-77400759 MsG0780040429.01.T01:CDS 30.0%
TAATAATTATGGTGTTTGGG+TGG - Chr7:77400154-77400173 MsG0780040429.01.T01:CDS 30.0%
TATCGACGATAAAACGAAAA+AGG - Chr7:77400241-77400260 MsG0780040429.01.T01:CDS 30.0%
TATGATAAACCGTATAATCC+AGG - Chr7:77400476-77400495 MsG0780040429.01.T01:CDS 30.0%
TATTAGGCCAAATCAATCTA+GGG + Chr7:77400139-77400158 None:intergenic 30.0%
TTATTAGGCCAAATCAATCT+AGG + Chr7:77400140-77400159 None:intergenic 30.0%
TTGAACCAAATCTAACTACA+TGG + Chr7:77399905-77399924 None:intergenic 30.0%
TTGCTAGATTGAAACATTTG+GGG - Chr7:77400741-77400760 MsG0780040429.01.T01:CDS 30.0%
TTGTTGACCATATTTACCAA+AGG + Chr7:77401253-77401272 None:intergenic 30.0%
TTTCTGAATAACCATGAAGT+GGG + Chr7:77399845-77399864 None:intergenic 30.0%
! CAAAGAAAAAACCAGTTTTG+AGG - Chr7:77399922-77399941 MsG0780040429.01.T01:CDS 30.0%
! CCTTTTGTTGAATCATACAA+AGG + Chr7:77400014-77400033 None:intergenic 30.0%
! GTTACAAATCAACATCGATT+TGG + Chr7:77400390-77400409 None:intergenic 30.0%
! TGCAAAAATTGAAGCTTGTT+TGG + Chr7:77399822-77399841 None:intergenic 30.0%
! TTTTCTGAATAACCATGAAG+TGG + Chr7:77399846-77399865 None:intergenic 30.0%
AAGGATCTTGATAGACCTTA+TGG - Chr7:77400260-77400279 MsG0780040429.01.T01:CDS 35.0%
ATCCAAACCCTAGATTGATT+TGG - Chr7:77400129-77400148 MsG0780040429.01.T01:CDS 35.0%
ATCTTGATAGACCTTATGGT+AGG - Chr7:77400264-77400283 MsG0780040429.01.T01:CDS 35.0%
GGCCTAATAATTATGGTGTT+TGG - Chr7:77400150-77400169 MsG0780040429.01.T01:CDS 35.0%
GGTTATCAAGGTTATTCATG+AGG - Chr7:77400361-77400380 MsG0780040429.01.T01:CDS 35.0%
GGTTTCTTCGAGAAATATCT+TGG + Chr7:77400669-77400688 None:intergenic 35.0%
TACATCTAGGCTAGAGATAA+TGG - Chr7:77401213-77401232 MsG0780040429.01.T01:CDS 35.0%
TCTTGATAGACCTTATGGTA+GGG - Chr7:77400265-77400284 MsG0780040429.01.T01:CDS 35.0%
TGTCTTGATAAAACTTGGTC+TGG - Chr7:77400206-77400225 MsG0780040429.01.T01:CDS 35.0%
TGTTAAGTTTCACCAAGCTA+AGG - Chr7:77400340-77400359 MsG0780040429.01.T01:CDS 35.0%
TTACTCAAGCTTGATTTACC+TGG - Chr7:77401064-77401083 MsG0780040429.01.T01:CDS 35.0%
TTCAACAAAAGGAACTGTTG+TGG - Chr7:77400022-77400041 MsG0780040429.01.T01:CDS 35.0%
TTCCTATTAACCCTACCATA+AGG + Chr7:77400278-77400297 None:intergenic 35.0%
! CTTCCTGAACTCTTTACTTT+TGG - Chr7:77401163-77401182 MsG0780040429.01.T01:CDS 35.0%
! TAACCTTGATAACCTTAGCT+TGG + Chr7:77400355-77400374 None:intergenic 35.0%
! TTAATCTGGAACCTCACTAT+TGG - Chr7:77401113-77401132 MsG0780040429.01.T01:CDS 35.0%
!! ACAATAGCATTGGCAACAAT+AGG + Chr7:77400923-77400942 None:intergenic 35.0%
!! TCGATGTTGATTTGTAACGA+CGG - Chr7:77400392-77400411 MsG0780040429.01.T01:CDS 35.0%
AAGAATCCATGCCAATAGTG+AGG + Chr7:77401127-77401146 None:intergenic 40.0%
AAGACTTATGGCCAATCGAA+AGG - Chr7:77401002-77401021 MsG0780040429.01.T01:CDS 40.0%
AATCGAAAGGAGACGACAAA+GGG - Chr7:77401015-77401034 MsG0780040429.01.T01:CDS 40.0%
ACCTGGTAACCTGGATTATA+CGG + Chr7:77400488-77400507 None:intergenic 40.0%
ACTGTTGTTCTTGATGCTAC+TGG - Chr7:77400431-77400450 MsG0780040429.01.T01:CDS 40.0%
AGACAATGACTTGAAGCTCA+AGG - Chr7:77400592-77400611 MsG0780040429.01.T01:CDS 40.0%
ATTCAGGAACAAGCTCCAAA+AGG + Chr7:77399962-77399981 None:intergenic 40.0%
CACGAGTATGGAAAGACTTA+TGG - Chr7:77400990-77401009 MsG0780040429.01.T01:CDS 40.0%
CCTCAAAGAGTTGTTGGAAT+CGG - Chr7:77400833-77400852 MsG0780040429.01.T01:CDS 40.0%
CGATTCCAACAACTCTTTGA+GGG + Chr7:77400835-77400854 None:intergenic 40.0%
GACCTTATGGTAGGGTTAAT+AGG - Chr7:77400273-77400292 MsG0780040429.01.T01:CDS 40.0%
GCTTGTTCCTGAATTCAAGA+AGG - Chr7:77399968-77399987 MsG0780040429.01.T01:CDS 40.0%
GGCATTGCATACAGAAATGT+AGG + Chr7:77400635-77400654 None:intergenic 40.0%
GTTACGGATGGATGATATAC+AGG - Chr7:77400709-77400728 MsG0780040429.01.T01:CDS 40.0%
GTTGTGGATCTTGTAGTTGT+GGG - Chr7:77400038-77400057 MsG0780040429.01.T01:CDS 40.0%
TCACCAAGCTAAGGTTATCA+AGG - Chr7:77400349-77400368 MsG0780040429.01.T01:CDS 40.0%
TGTTGTGGATCTTGTAGTTG+TGG - Chr7:77400037-77400056 MsG0780040429.01.T01:CDS 40.0%
TTCAGGAACAAGCTCCAAAA+GGG + Chr7:77399961-77399980 None:intergenic 40.0%
! AGGCTAGAGATAATGGCTAA+GGG - Chr7:77401220-77401239 MsG0780040429.01.T01:CDS 40.0%
! CAAAGGGAGTTCTTCTGTTT+TGG - Chr7:77401031-77401050 MsG0780040429.01.T01:CDS 40.0%
! CAATTTTTGCACCCACTTCA+TGG - Chr7:77399831-77399850 MsG0780040429.01.T01:CDS 40.0%
! TAGGCTAGAGATAATGGCTA+AGG - Chr7:77401219-77401238 MsG0780040429.01.T01:CDS 40.0%
!! CAGTATCTTGGTTCTGATAG+AGG - Chr7:77400944-77400963 MsG0780040429.01.T01:CDS 40.0%
!! GGTTCTGATAGAGGTCTTTT+AGG - Chr7:77400953-77400972 MsG0780040429.01.T01:CDS 40.0%
!!! GGAGTTCTTCTGTTTTGGTA+TGG - Chr7:77401036-77401055 MsG0780040429.01.T01:CDS 40.0%
ACCGTATAATCCAGGTTACC+AGG - Chr7:77400484-77400503 MsG0780040429.01.T01:CDS 45.0%
AGCTTGATTTACCTGGCACA+AGG - Chr7:77401071-77401090 MsG0780040429.01.T01:CDS 45.0%
AGTTGTTGGAATCGGTGGTA+CGG - Chr7:77400841-77400860 MsG0780040429.01.T01:CDS 45.0%
ATATCATCCATCCGTAACCC+AGG + Chr7:77400707-77400726 None:intergenic 45.0%
CAAAGAGTTGTTGGAATCGG+TGG - Chr7:77400836-77400855 MsG0780040429.01.T01:CDS 45.0%
CAATCGAAAGGAGACGACAA+AGG - Chr7:77401014-77401033 MsG0780040429.01.T01:CDS 45.0%
CCGATTCCAACAACTCTTTG+AGG + Chr7:77400836-77400855 None:intergenic 45.0%
CTTTGTCGTCTCCTTTCGAT+TGG + Chr7:77401016-77401035 None:intergenic 45.0%
GGTTCTTGCTACCATATACC+CGG + Chr7:77400888-77400907 None:intergenic 45.0%
GTATATGGTAGCAAGAACCC+TGG - Chr7:77400889-77400908 MsG0780040429.01.T01:CDS 45.0%
GTTCTCCCTCAAAGAGTTGT+TGG - Chr7:77400827-77400846 MsG0780040429.01.T01:CDS 45.0%
TATCATCCATCCGTAACCCA+GGG + Chr7:77400706-77400725 None:intergenic 45.0%
TCGAAAAATCTCCTTGTGCC+AGG + Chr7:77401085-77401104 None:intergenic 45.0%
! ACAACTCTTTGAGGGAGAAC+TGG + Chr7:77400827-77400846 None:intergenic 45.0%
! ACGAAGTATCTGCACGAGTA+TGG - Chr7:77400978-77400997 MsG0780040429.01.T01:CDS 45.0%
! CAACTCTTTGAGGGAGAACT+GGG + Chr7:77400826-77400845 None:intergenic 45.0%
! GGCCAAATCAATCTAGGGTT+TGG + Chr7:77400134-77400153 None:intergenic 45.0%
! GGTGGATGAATTTGAAGCGA+TGG - Chr7:77400172-77400191 MsG0780040429.01.T01:CDS 45.0%
!! TAACGACGGTGTTACAGTTC+AGG - Chr7:77400406-77400425 MsG0780040429.01.T01:CDS 45.0%
AACAATAGGAGCTGCAGCCA+GGG + Chr7:77400909-77400928 None:intergenic 50.0%
CTGCTACTAGCCCTCAAAAC+TGG + Chr7:77399936-77399955 None:intergenic 50.0%
CTGGAACCTCACTATTGGCA+TGG - Chr7:77401118-77401137 MsG0780040429.01.T01:CDS 50.0%
GAGCAGTGTGTGATTCCCAT+GGG - Chr7:77400791-77400810 MsG0780040429.01.T01:CDS 50.0%
GATCTTGTAGTTGTGGGAGG+TGG - Chr7:77400044-77400063 MsG0780040429.01.T01:CDS 50.0%
GCATCCTTCAACCGGGTATA+TGG - Chr7:77400874-77400893 MsG0780040429.01.T01:CDS 50.0%
GCTACCATATACCCGGTTGA+AGG + Chr7:77400881-77400900 None:intergenic 50.0%
GGCTAAGGGAACTCTTCCTT+TGG - Chr7:77401234-77401253 MsG0780040429.01.T01:CDS 50.0%
GTGGATCTTGTAGTTGTGGG+AGG - Chr7:77400041-77400060 MsG0780040429.01.T01:CDS 50.0%
TGAGCAGTGTGTGATTCCCA+TGG - Chr7:77400790-77400809 MsG0780040429.01.T01:CDS 50.0%
TGTAGCACAGCAGGTTTCTG+AGG - Chr7:77400082-77400101 MsG0780040429.01.T01:CDS 50.0%
TTTGAGGGAGAACTGGGAGA+GGG + Chr7:77400820-77400839 None:intergenic 50.0%
CAACAATAGGAGCTGCAGCC+AGG + Chr7:77400910-77400929 None:intergenic 55.0%
CAGGTTACCAGGTTGCGTAC+GGG - Chr7:77400495-77400514 MsG0780040429.01.T01:CDS 55.0%
CAGTGTGTGATTCCCATGGG+TGG - Chr7:77400794-77400813 MsG0780040429.01.T01:CDS 55.0%
CCAAAATCCCGTACGCAACC+TGG + Chr7:77400505-77400524 None:intergenic 55.0%
CCAGGTTACCAGGTTGCGTA+CGG - Chr7:77400494-77400513 MsG0780040429.01.T01:CDS 55.0%
GGATGGTGCATCCTTCAACC+GGG - Chr7:77400867-77400886 MsG0780040429.01.T01:CDS 55.0%
GGGATGGTGCATCCTTCAAC+CGG - Chr7:77400866-77400885 MsG0780040429.01.T01:CDS 55.0%
GGTTGAAGGATGCACCATCC+CGG + Chr7:77400867-77400886 None:intergenic 55.0%
TGTGCTACAGCAAGACCTGC+AGG + Chr7:77400071-77400090 None:intergenic 55.0%
! AGGTCTTGCTGTAGCACAGC+AGG - Chr7:77400073-77400092 MsG0780040429.01.T01:CDS 55.0%
! CCAGGTTGCGTACGGGATTT+TGG - Chr7:77400502-77400521 MsG0780040429.01.T01:CDS 55.0%
! CTTTGAGGGAGAACTGGGAG+AGG + Chr7:77400821-77400840 None:intergenic 55.0%
! GGCTAGTAGCAGTGCCCTTT+TGG - Chr7:77399944-77399963 MsG0780040429.01.T01:CDS 55.0%
!! CACAGCAGGTTTCTGAGGCA+GGG - Chr7:77400087-77400106 MsG0780040429.01.T01:CDS 55.0%
!!! TGCGTACGGGATTTTGGCTG+AGG - Chr7:77400508-77400527 MsG0780040429.01.T01:CDS 55.0%
CCGTACGCAACCTGGTAACC+TGG + Chr7:77400497-77400516 None:intergenic 60.0%
GTTGGAATCGGTGGTACGGC+CGG - Chr7:77400845-77400864 MsG0780040429.01.T01:CDS 60.0%
TTGGAATCGGTGGTACGGCC+GGG - Chr7:77400846-77400865 MsG0780040429.01.T01:CDS 60.0%
TTGTAGCGCGCCCTGGGTTA+CGG - Chr7:77400693-77400712 MsG0780040429.01.T01:CDS 60.0%
!! GCACAGCAGGTTTCTGAGGC+AGG - Chr7:77400086-77400105 MsG0780040429.01.T01:CDS 60.0%
AACTGGGAGAGGGCCACCCA+TGG + Chr7:77400810-77400829 None:intergenic 65.0%
AATCGGTGGTACGGCCGGGA+TGG - Chr7:77400850-77400869 MsG0780040429.01.T01:CDS 65.0%
ACCTCTCTTGTAGCGCGCCC+TGG - Chr7:77400686-77400705 MsG0780040429.01.T01:CDS 65.0%
ACTGGGAGAGGGCCACCCAT+GGG + Chr7:77400809-77400828 None:intergenic 65.0%
CCTCTCTTGTAGCGCGCCCT+GGG - Chr7:77400687-77400706 MsG0780040429.01.T01:CDS 65.0%
GTTGTGGGAGGTGGTCCTGC+AGG - Chr7:77400053-77400072 MsG0780040429.01.T01:CDS 65.0%
AGCGCGCCCTGGGTTACGGA+TGG - Chr7:77400697-77400716 MsG0780040429.01.T01:CDS 70.0%
CCCAGGGCGCGCTACAAGAG+AGG + Chr7:77400690-77400709 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 77399798 77401294 77399798 ID=MsG0780040429.01;Name=MsG0780040429.01
Chr7 mRNA 77399798 77401294 77399798 ID=MsG0780040429.01.T01;Parent=MsG0780040429.01;Name=MsG0780040429.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|498
Chr7 exon 77399798 77401294 77399798 ID=MsG0780040429.01.T01:exon:14888;Parent=MsG0780040429.01.T01
Chr7 CDS 77399798 77401294 77399798 ID=MsG0780040429.01.T01:cds;Parent=MsG0780040429.01.T01
Gene Sequence

>MsG0780040429.01.T01

ATGGATACTTTACTCAAAACACCAAACAAGCTTCAATTTTTGCACCCACTTCATGGTTATTCAGAAAAATTGAGTCATTTTTCAGCTTCAGATAAGTTGCAAAACCATGTAGTTAGATTTGGTTCAAAGAAAAAACCAGTTTTGAGGGCTAGTAGCAGTGCCCTTTTGGAGCTTGTTCCTGAATTCAAGAAGGAAAATTTGGATTTTGAACTTCCTTTGTATGATTCAACAAAAGGAACTGTTGTGGATCTTGTAGTTGTGGGAGGTGGTCCTGCAGGTCTTGCTGTAGCACAGCAGGTTTCTGAGGCAGGGCTTTCTGTTTGTGCTATTGATCCAAACCCTAGATTGATTTGGCCTAATAATTATGGTGTTTGGGTGGATGAATTTGAAGCGATGGATTTGCTTGATTGTCTTGATAAAACTTGGTCTGGTGCTGTTGTTTATATCGACGATAAAACGAAAAAGGATCTTGATAGACCTTATGGTAGGGTTAATAGGAAGCTTTTGAAGTCAAAGATGCTACAAAAGTGTATATCAAATGGTGTTAAGTTTCACCAAGCTAAGGTTATCAAGGTTATTCATGAGGAATCCAAATCGATGTTGATTTGTAACGACGGTGTTACAGTTCAGGCTACTGTTGTTCTTGATGCTACTGGCTTTTCGAGATGTCTAGTGCAATATGATAAACCGTATAATCCAGGTTACCAGGTTGCGTACGGGATTTTGGCTGAGGTTGAAGAACACCCTTTTGATGTTGATAAAATGCTTTTTATGGACTGGAGAGATTCGCATCTAGACAATGACTTGAAGCTCAAGGAGAGAAATAGTAAAATACCTACATTTCTGTATGCAATGCCCTTTTCGTCAACCAAGATATTTCTCGAAGAAACCTCTCTTGTAGCGCGCCCTGGGTTACGGATGGATGATATACAGGACAGAATAGTTGCTAGATTGAAACATTTGGGGATTAATGTGAAAAGCATTGAAGAAGATGAGCAGTGTGTGATTCCCATGGGTGGCCCTCTCCCAGTTCTCCCTCAAAGAGTTGTTGGAATCGGTGGTACGGCCGGGATGGTGCATCCTTCAACCGGGTATATGGTAGCAAGAACCCTGGCTGCAGCTCCTATTGTTGCCAATGCTATTGTTCAGTATCTTGGTTCTGATAGAGGTCTTTTAGGAGACGAAGTATCTGCACGAGTATGGAAAGACTTATGGCCAATCGAAAGGAGACGACAAAGGGAGTTCTTCTGTTTTGGTATGGACGTCTTACTCAAGCTTGATTTACCTGGCACAAGGAGATTTTTCGATGCATTTTTTAATCTGGAACCTCACTATTGGCATGGATTCTTATCATCAAGACTGTATCTTCCTGAACTCTTTACTTTTGGATTGTCTCTATTTTCTTATGCTTCAAATACATCTAGGCTAGAGATAATGGCTAAGGGAACTCTTCCTTTGGTAAATATGGTCAACAATTTGATACAAGATAAAGAATAA

Protein sequence

>MsG0780040429.01.T01

MDTLLKTPNKLQFLHPLHGYSEKLSHFSASDKLQNHVVRFGSKKKPVLRASSSALLELVPEFKKENLDFELPLYDSTKGTVVDLVVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDKTWSGAVVYIDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEESKSMLICNDGVTVQATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMLFMDWRDSHLDNDLKLKERNSKIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQDRIVARLKHLGINVKSIEEDEQCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGLLGDEVSARVWKDLWPIERRRQREFFCFGMDVLLKLDLPGTRRFFDAFFNLEPHYWHGFLSSRLYLPELFTFGLSLFSYASNTSRLEIMAKGTLPLVNMVNNLIQDKE*