AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011279.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011279.01.T01 MTR_2g101400 96.353 329 12 0 1 329 1 329 0.0 665
MsG0280011279.01.T01 MTR_7g086110 67.213 305 99 1 26 329 4 308 3.74e-153 438
MsG0280011279.01.T01 MTR_2g067760 61.342 313 119 2 17 329 21 331 4.26e-144 416
MsG0280011279.01.T01 MTR_2g451450 58.086 303 126 1 27 329 30 331 2.13e-126 370
MsG0280011279.01.T01 MTR_2g451450 63.134 217 79 1 113 329 1 216 3.86e-97 292
MsG0280011279.01.T01 MTR_2g101410 93.902 82 5 0 384 465 102 183 1.38e-45 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011279.01.T01 AT3G12740 63.259 313 113 2 17 329 23 333 1.92e-145 419
MsG0280011279.01.T01 AT1G79450 61.981 313 117 2 17 329 22 332 6.50e-141 408
MsG0280011279.01.T01 AT1G54320 61.342 313 119 2 17 329 22 332 1.02e-140 407
MsG0280011279.01.T01 AT1G16360 61.146 314 120 2 16 329 21 332 1.03e-140 407
MsG0280011279.01.T01 AT1G16360 58.104 327 133 3 26 352 17 339 1.06e-135 394
MsG0280011279.01.T01 AT1G16360 60.855 304 117 2 26 329 17 318 8.84e-135 392
MsG0280011279.01.T01 AT5G46150 52.727 330 154 2 1 329 1 329 5.97e-115 341
MsG0280011279.01.T01 AT5G46150 52.727 330 154 2 1 329 1 329 2.53e-114 340
MsG0280011279.01.T01 AT5G46150 52.727 330 154 2 1 329 1 329 2.53e-114 340
MsG0280011279.01.T01 AT1G79450 60.920 261 100 2 69 329 7 265 2.33e-112 333
MsG0280011279.01.T01 AT1G16360 55.502 209 91 2 26 234 17 223 1.61e-78 244
MsG0280011279.01.T01 AT1G16360 55.502 209 91 2 26 234 17 223 1.61e-78 244
MsG0280011279.01.T01 AT5G46150 49.145 234 117 2 1 233 1 233 6.99e-73 230

Find 72 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCATCTTTATCCCTAT+TGG 0.278510 2:+81872606 MsG0280011279.01.T01:CDS
TTTCCAACACCTTACAATAT+TGG 0.291280 2:-81875940 None:intergenic
CTATCCTTGTTCTGTGCTAT+AGG 0.299641 2:+81874190 MsG0280011279.01.T01:CDS
TTTATGTTAGGAAATTAATA+TGG 0.301276 2:+81874414 MsG0280011279.01.T01:CDS
CGAACATAGCCAAGTGTCTT+AGG 0.307809 2:-81876131 None:intergenic
GTTCTGATAAAATTTATGTT+AGG 0.344616 2:+81874402 MsG0280011279.01.T01:CDS
ATTGCCACATTTACTGCAAT+TGG 0.348370 2:+81872585 MsG0280011279.01.T01:CDS
TTTCAGAGTGGAGGTTTGAT+TGG 0.358409 2:+81873603 MsG0280011279.01.T01:CDS
ACCCATCCAGGTGTTAGAAT+TGG 0.365146 2:-81872333 None:intergenic
TTAGAGTGTGGACAATAATC+TGG 0.381781 2:+81876069 MsG0280011279.01.T01:CDS
GTTGTCCATTGAAAATTTGT+AGG 0.382564 2:-81873496 None:intergenic
GACACTGTTTATGCAGCTTA+TGG 0.383480 2:+81876035 MsG0280011279.01.T01:CDS
AACAATGATGCAAGACCAAT+AGG 0.394455 2:-81872621 None:intergenic
AACAAGAGGATCTGATTGTT+TGG 0.396536 2:+81873960 MsG0280011279.01.T01:CDS
AGCTGCATAAACAGTGTCAT+TGG 0.408805 2:-81876030 None:intergenic
GGGATTGCATACCTTGTTGT+TGG 0.410908 2:+81874163 MsG0280011279.01.T01:CDS
CAGAGTGGAGGTTTGATTGG+AGG 0.413776 2:+81873606 MsG0280011279.01.T01:CDS
CCAACTTTCAGAAAACTGTA+TGG 0.436379 2:+81874001 MsG0280011279.01.T01:CDS
ACAAGACTTGCACCCACAAA+TGG 0.438149 2:+81872839 MsG0280011279.01.T01:CDS
TTCAAAAGTTGTGGCTATTG+AGG 0.439578 2:+81876004 MsG0280011279.01.T01:CDS
CAACTACAACTTGGATTGGT+GGG 0.445444 2:+81874125 MsG0280011279.01.T01:CDS
ATGAGGCCACAAGGAACAAT+TGG 0.445844 2:-81873450 None:intergenic
TTCCTTGTGGCCTCATTGCA+TGG 0.449722 2:+81873457 MsG0280011279.01.T01:CDS
TACAACACATACGAGTTTCA+AGG 0.464659 2:+81874082 MsG0280011279.01.T01:CDS
GTTAGAATTGGTTTCCATGC+AGG 0.464924 2:-81872321 None:intergenic
ATTCCAATATTGTAAGGTGT+TGG 0.477856 2:+81875937 MsG0280011279.01.T01:CDS
ATTGCATACCTTGTTGTTGG+TGG 0.482393 2:+81874166 MsG0280011279.01.T01:CDS
GTGGGTGCAAGTCTTGTTAG+TGG 0.484884 2:-81872833 None:intergenic
CTATCAACTACAACTTGGAT+TGG 0.485356 2:+81874121 MsG0280011279.01.T01:CDS
TGATGAAGTCATATCCATCA+TGG 0.492388 2:-81871948 None:intergenic
GTAGAAATGATAAGCAGTTG+TGG 0.499291 2:+81873364 MsG0280011279.01.T01:CDS
TTTGATAGTAATTATCAAGC+TGG 0.503169 2:-81872990 None:intergenic
GCTCTGATTCCAATATTGTA+AGG 0.508027 2:+81875931 MsG0280011279.01.T01:CDS
GTTTCAAGGTAGGAAGAAGT+TGG 0.512965 2:+81874096 MsG0280011279.01.T01:CDS
ACAATGATGCAAGACCAATA+GGG 0.513968 2:-81872620 None:intergenic
CTATGTTCGAAGCTATATGC+AGG 0.519582 2:+81876145 MsG0280011279.01.T01:CDS
ACCAATTCTAACACCTGGAT+GGG 0.523126 2:+81872332 MsG0280011279.01.T01:CDS
CTACCTGAGTTCACTGAATG+TGG 0.530442 2:+81875963 MsG0280011279.01.T01:CDS
TGGTTCTATCAACTACAACT+TGG 0.538526 2:+81874116 MsG0280011279.01.T01:CDS
ATGTACTAACAATCCATTTG+TGG 0.539027 2:-81872852 None:intergenic
CAACTTTCAGAAAACTGTAT+GGG 0.539444 2:+81874002 MsG0280011279.01.T01:CDS
GACTAAAGCTTCAAAAGTTG+TGG 0.539848 2:+81875995 MsG0280011279.01.T01:CDS
GATATGACTTCATCAAAAGA+TGG 0.544518 2:+81871956 MsG0280011279.01.T01:CDS
AACCAATTCTAACACCTGGA+TGG 0.544797 2:+81872331 MsG0280011279.01.T01:CDS
GTTGCATATTATACCCATCC+AGG 0.548338 2:-81872345 None:intergenic
TCAACTACAACTTGGATTGG+TGG 0.549590 2:+81874124 MsG0280011279.01.T01:CDS
AACTGCATCTTTAGCATCAG+AGG 0.555713 2:-81872791 None:intergenic
AGTAGACAAAACAGAAGGAA+AGG 0.558583 2:+81873425 MsG0280011279.01.T01:CDS
TAGAGTGTGGACAATAATCT+GGG 0.562428 2:+81876070 MsG0280011279.01.T01:CDS
TTGTGGAGAAAGTCAGCTGA+AGG 0.563848 2:+81873381 MsG0280011279.01.T01:CDS
CTCCATGCAATGAGGCCACA+AGG 0.565861 2:-81873459 None:intergenic
GACAATAATCTGGGATAACA+AGG 0.566658 2:+81876079 MsG0280011279.01.T01:CDS
GCATCAGTTGAGTGAACAAG+AGG 0.580136 2:+81873946 MsG0280011279.01.T01:intron
TGGAAACCAATTCTAACACC+TGG 0.581766 2:+81872327 MsG0280011279.01.T01:CDS
GAATCCTATAGCACAGAACA+AGG 0.595106 2:-81874194 None:intergenic
ATTACTATCAAAATCATCGC+CGG 0.596581 2:+81873001 MsG0280011279.01.T01:CDS
GATTCCAATTGCAGTAAATG+TGG 0.597750 2:-81872589 None:intergenic
TTCTGTATGTGATCAAGCCA+AGG 0.598227 2:+81874221 MsG0280011279.01.T01:CDS
CACAGCAAGAACTACCTGCA+TGG 0.603633 2:+81872307 MsG0280011279.01.T01:CDS
GTTTATGCAGCTTATGGTGA+TGG 0.610979 2:+81876041 MsG0280011279.01.T01:CDS
GCTACTATTCCTAAGACACT+TGG 0.612499 2:+81876122 MsG0280011279.01.T01:CDS
TGTACTAACAATCCATTTGT+GGG 0.623733 2:-81872851 None:intergenic
AGGATAGTCCACCAACAACA+AGG 0.647718 2:-81874174 None:intergenic
ACTGCATCTTTAGCATCAGA+GGG 0.648958 2:-81872790 None:intergenic
TGTGGAGAAAGTCAGCTGAA+GGG 0.651423 2:+81873382 MsG0280011279.01.T01:CDS
GATCCAGTAGACAAAACAGA+AGG 0.655095 2:+81873420 MsG0280011279.01.T01:CDS
TGAACATACTCCATGCAATG+AGG 0.658438 2:-81873467 None:intergenic
TGTCCACATTCAGTGAACTC+AGG 0.659750 2:-81875966 None:intergenic
TATGTTCGAAGCTATATGCA+GGG 0.664874 2:+81876146 MsG0280011279.01.T01:CDS
AAGGAGCCAATTGTTCCTTG+TGG 0.669710 2:+81873444 MsG0280011279.01.T01:CDS
ACACATACGAGTTTCAAGGT+AGG 0.677272 2:+81874086 MsG0280011279.01.T01:CDS
GTGATGGCAAGATTAGAGTG+TGG 0.758764 2:+81876057 MsG0280011279.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAATGTTCTAA+TGG - Chr2:81874777-81874796 None:intergenic 10.0%
!! AAAGATATTTACAAAAAAAT+CGG + Chr2:81874742-81874761 MsG0280011279.01.T01:intron 10.0%
!! TATAATATCAAATGAATAAA+TGG - Chr2:81875156-81875175 None:intergenic 10.0%
!!! TAGAACATTTTTTTTTTTTA+CGG + Chr2:81874778-81874797 MsG0280011279.01.T01:intron 10.0%
!!! TTGTGTTTTTTTTTTTTTTT+TGG - Chr2:81872140-81872159 None:intergenic 10.0%
!!! TTTAGACAAAAATTATATTT+TGG - Chr2:81872442-81872461 None:intergenic 10.0%
!! AAAAAATCTTGGAAAATTTA+GGG + Chr2:81872195-81872214 MsG0280011279.01.T01:intron 15.0%
!! ACTAATTATTATTTCCATTT+AGG - Chr2:81872918-81872937 None:intergenic 15.0%
!! TAAAAAATCTTGGAAAATTT+AGG + Chr2:81872194-81872213 MsG0280011279.01.T01:intron 15.0%
!! TTTATGTTAGGAAATTAATA+TGG + Chr2:81874414-81874433 MsG0280011279.01.T01:CDS 15.0%
!!! AGAACATTTTTTTTTTTTAC+GGG + Chr2:81874779-81874798 MsG0280011279.01.T01:intron 15.0%
!!! CAACTGAATTTTATTTATAA+TGG + Chr2:81872706-81872725 MsG0280011279.01.T01:intron 15.0%
!!! TATAATTTTTGTCTAAATCA+CGG + Chr2:81872445-81872464 MsG0280011279.01.T01:intron 15.0%
!!! TTTCTAAAATTATTACATCA+TGG - Chr2:81875073-81875092 None:intergenic 15.0%
!! AAAAAATACCAATATCCTAT+GGG + Chr2:81874719-81874738 MsG0280011279.01.T01:intron 20.0%
!! AACAAAAACAAATTTACTTG+AGG + Chr2:81873243-81873262 MsG0280011279.01.T01:intron 20.0%
!! AACATAACCTTTCAAATATA+TGG + Chr2:81875186-81875205 MsG0280011279.01.T01:intron 20.0%
!! AACTTACTAAGAAATATCAA+TGG + Chr2:81875613-81875632 MsG0280011279.01.T01:intron 20.0%
!! AGTGACAAAAATTCTAAATT+TGG + Chr2:81873558-81873577 MsG0280011279.01.T01:CDS 20.0%
!! ATCATCCAAAATCATATTAA+AGG - Chr2:81873321-81873340 None:intergenic 20.0%
!! ATTAAACTGTTTATCCAAAT+AGG - Chr2:81873664-81873683 None:intergenic 20.0%
!! CTTGTAATATATTTGCATAA+AGG - Chr2:81874689-81874708 None:intergenic 20.0%
!! GTAATTAATTAATGAGGTTA+TGG - Chr2:81875480-81875499 None:intergenic 20.0%
!! GTTCTGATAAAATTTATGTT+AGG + Chr2:81874402-81874421 MsG0280011279.01.T01:CDS 20.0%
!! TATTAAGAAACTGTAAGAAA+TGG - Chr2:81872517-81872536 None:intergenic 20.0%
!! TTAAACTGTTTATCCAAATA+GGG - Chr2:81873663-81873682 None:intergenic 20.0%
!!! AATCTTTTTCTATATGAGAA+AGG - Chr2:81875223-81875242 None:intergenic 20.0%
!!! ATTTTCAGTGTTATCAATTA+CGG + Chr2:81873031-81873050 MsG0280011279.01.T01:intron 20.0%
!!! TTTATGTCTGTAATTTTATC+AGG + Chr2:81872560-81872579 MsG0280011279.01.T01:intron 20.0%
!!! TTTCCAAGATTTTTTAATAC+AGG - Chr2:81872190-81872209 None:intergenic 20.0%
!!! TTTGAAGTTTTCTTTGAATT+GGG - Chr2:81871992-81872011 None:intergenic 20.0%
!!! TTTGGTGTAATTAATTAATG+AGG - Chr2:81875486-81875505 None:intergenic 20.0%
!!! TTTTCATTTTCATACCTAAA+TGG + Chr2:81872901-81872920 MsG0280011279.01.T01:intron 20.0%
! AAAGAGACACTAAATACATA+TGG + Chr2:81874916-81874935 MsG0280011279.01.T01:intron 25.0%
! AAAGATCATTTCATGATCAA+TGG - Chr2:81875576-81875595 None:intergenic 25.0%
! AAGTTGCATATACAGTATAT+TGG - Chr2:81875390-81875409 None:intergenic 25.0%
! AATGAGGTTATGGAATATAT+TGG - Chr2:81875470-81875489 None:intergenic 25.0%
! ATATGTATTTAGTGTCTCTT+TGG - Chr2:81874917-81874936 None:intergenic 25.0%
! CACTAAATACATATGGAAAT+TGG + Chr2:81874923-81874942 MsG0280011279.01.T01:intron 25.0%
! GAAAAAATACCAATATCCTA+TGG + Chr2:81874718-81874737 MsG0280011279.01.T01:intron 25.0%
! GAATAAATGGAATCATTTGA+GGG - Chr2:81875143-81875162 None:intergenic 25.0%
! GCAAATTAAGACATACATTT+AGG - Chr2:81872019-81872038 None:intergenic 25.0%
! TAATTAGTTGCAAACTTTAC+AGG + Chr2:81872930-81872949 MsG0280011279.01.T01:intron 25.0%
! TGAATAAATGGAATCATTTG+AGG - Chr2:81875144-81875163 None:intergenic 25.0%
! TGATGTGTAGTAAGTATTAT+TGG - Chr2:81875551-81875570 None:intergenic 25.0%
! TGTAACATGTAAGTACTTAT+AGG - Chr2:81873702-81873721 None:intergenic 25.0%
! TTTGTAAATATCTTTCCCAT+AGG - Chr2:81874737-81874756 None:intergenic 25.0%
! TTTGTTAGATTGATTGAAAG+AGG + Chr2:81874847-81874866 MsG0280011279.01.T01:intron 25.0%
!! AAAAAAATGTTCTAATGGAC+CGG - Chr2:81874772-81874791 None:intergenic 25.0%
!! AAGAAAAGCTGAAACATTTT+TGG + Chr2:81874447-81874466 MsG0280011279.01.T01:CDS 25.0%
!! CTTTTATGATTGAAACTTGA+AGG + Chr2:81874977-81874996 MsG0280011279.01.T01:intron 25.0%
!! TATCCTAAAAATTTTCAGAG+TGG + Chr2:81873591-81873610 MsG0280011279.01.T01:CDS 25.0%
!! TGATGCCTTTAATATGATTT+TGG + Chr2:81873313-81873332 MsG0280011279.01.T01:intron 25.0%
!! TTCTTTTGAATTAACTGATG+AGG - Chr2:81875110-81875129 None:intergenic 25.0%
!! TTTGATAGTAATTATCAAGC+TGG - Chr2:81872993-81873012 None:intergenic 25.0%
!!! ATTGTTTCAAGTTACATCAT+AGG - Chr2:81872106-81872125 None:intergenic 25.0%
!!! CTTTGAAGTTTTCTTTGAAT+TGG - Chr2:81871993-81872012 None:intergenic 25.0%
!!! GCTTTTTCTATACTACTTTA+TGG + Chr2:81874259-81874278 MsG0280011279.01.T01:intron 25.0%
!!! TTTTTTTTTACGGGTTAGAT+GGG + Chr2:81874788-81874807 MsG0280011279.01.T01:intron 25.0%
!!! TTTTTTTTTTACGGGTTAGA+TGG + Chr2:81874787-81874806 MsG0280011279.01.T01:intron 25.0%
AACAAAAAGAACATAGCATG+GGG + Chr2:81873534-81873553 MsG0280011279.01.T01:CDS 30.0%
ACACTCACCATATATTTGAA+AGG - Chr2:81875196-81875215 None:intergenic 30.0%
ACATCATAGGAAGAAAAAGA+AGG - Chr2:81872093-81872112 None:intergenic 30.0%
ATATCTTTCCCATAGGATAT+TGG - Chr2:81874730-81874749 None:intergenic 30.0%
ATGTACTAACAATCCATTTG+TGG - Chr2:81872855-81872874 None:intergenic 30.0%
ATGTCAAATTTCAGACCATT+TGG + Chr2:81874947-81874966 MsG0280011279.01.T01:intron 30.0%
ATTACTATCAAAATCATCGC+CGG + Chr2:81873001-81873020 MsG0280011279.01.T01:CDS 30.0%
ATTCCAATATTGTAAGGTGT+TGG + Chr2:81875937-81875956 MsG0280011279.01.T01:CDS 30.0%
ATTTCTGTTCCATGATAAGT+AGG - Chr2:81874543-81874562 None:intergenic 30.0%
CAACAAAAAGAACATAGCAT+GGG + Chr2:81873533-81873552 MsG0280011279.01.T01:CDS 30.0%
CAACTTTCAGAAAACTGTAT+GGG + Chr2:81874002-81874021 MsG0280011279.01.T01:CDS 30.0%
CATTTGTTCCTTGTGATTTA+CGG + Chr2:81872162-81872181 MsG0280011279.01.T01:intron 30.0%
GAAGTGCATGCTTAAATTAA+CGG - Chr2:81872495-81872514 None:intergenic 30.0%
GAGCCTGTATTAAAAAATCT+TGG + Chr2:81872184-81872203 MsG0280011279.01.T01:intron 30.0%
GATATGACTTCATCAAAAGA+TGG + Chr2:81871956-81871975 MsG0280011279.01.T01:CDS 30.0%
GATGATGTAAAAGCAAAATC+AGG - Chr2:81875653-81875672 None:intergenic 30.0%
GCAAAATATTTCCTTTACCT+TGG - Chr2:81874241-81874260 None:intergenic 30.0%
GTTATGATATGATGAGTTGT+GGG - Chr2:81875523-81875542 None:intergenic 30.0%
GTTGTCCATTGAAAATTTGT+AGG - Chr2:81873499-81873518 None:intergenic 30.0%
TAAAGAAATACTAATGCAGG+TGG + Chr2:81872729-81872748 MsG0280011279.01.T01:intron 30.0%
TCAAATATATGGTGAGTGTT+TGG + Chr2:81875197-81875216 MsG0280011279.01.T01:intron 30.0%
TCAACAAAAAGAACATAGCA+TGG + Chr2:81873532-81873551 MsG0280011279.01.T01:CDS 30.0%
TGGGTTATGAATATGAAGTT+TGG - Chr2:81875504-81875523 None:intergenic 30.0%
TGGTAAAGAAATACTAATGC+AGG + Chr2:81872726-81872745 MsG0280011279.01.T01:intron 30.0%
TGTACTAACAATCCATTTGT+GGG - Chr2:81872854-81872873 None:intergenic 30.0%
TGTTATGATATGATGAGTTG+TGG - Chr2:81875524-81875543 None:intergenic 30.0%
TTTCCAACACCTTACAATAT+TGG - Chr2:81875943-81875962 None:intergenic 30.0%
TTTCCATAAGCTCTTTCAAA+CGG + Chr2:81873829-81873848 MsG0280011279.01.T01:intron 30.0%
! AATTTTTGTCTAAATCACGG+TGG + Chr2:81872448-81872467 MsG0280011279.01.T01:intron 30.0%
! CAAATTTTCAATGGACAACA+AGG + Chr2:81873500-81873519 MsG0280011279.01.T01:CDS 30.0%
! TGACACCTACAAATTTTCAA+TGG + Chr2:81873491-81873510 MsG0280011279.01.T01:CDS 30.0%
! TTGAATACGCTCTTTTCTAT+TGG + Chr2:81874366-81874385 MsG0280011279.01.T01:CDS 30.0%
! TTGCATCATTGTTTTCATCA+GGG + Chr2:81872631-81872650 MsG0280011279.01.T01:CDS 30.0%
!! AAGGTGTTTCTTTTGTAGAA+CGG - Chr2:81875715-81875734 None:intergenic 30.0%
AAAAGCAAAATCAGGTGAGT+TGG - Chr2:81875645-81875664 None:intergenic 35.0%
AAAGCAAAATCAGGTGAGTT+GGG - Chr2:81875644-81875663 None:intergenic 35.0%
AACAAGAGGATCTGATTGTT+TGG + Chr2:81873960-81873979 MsG0280011279.01.T01:CDS 35.0%
AACAATGATGCAAGACCAAT+AGG - Chr2:81872624-81872643 None:intergenic 35.0%
AACACTGAAAATGTGCATAC+CGG - Chr2:81873023-81873042 None:intergenic 35.0%
ACAATGATGCAAGACCAATA+GGG - Chr2:81872623-81872642 None:intergenic 35.0%
ACAGTGGTAAGTTGTTTGTA+GGG - Chr2:81875838-81875857 None:intergenic 35.0%
AGCTGGTAGTAGATAAAAAC+AGG - Chr2:81872976-81872995 None:intergenic 35.0%
AGTAGACAAAACAGAAGGAA+AGG + Chr2:81873425-81873444 MsG0280011279.01.T01:CDS 35.0%
ATAATGCTATGGACGTGATT+TGG - Chr2:81875887-81875906 None:intergenic 35.0%
ATTGCCACATTTACTGCAAT+TGG + Chr2:81872585-81872604 MsG0280011279.01.T01:CDS 35.0%
CCAACTTTCAGAAAACTGTA+TGG + Chr2:81874001-81874020 MsG0280011279.01.T01:CDS 35.0%
CGTAAATCACAAGGAACAAA+TGG - Chr2:81872164-81872183 None:intergenic 35.0%
CTATCAACTACAACTTGGAT+TGG + Chr2:81874121-81874140 MsG0280011279.01.T01:CDS 35.0%
GAAAGAGGTTAAAGCACATT+TGG + Chr2:81874862-81874881 MsG0280011279.01.T01:intron 35.0%
GACTAAAGCTTCAAAAGTTG+TGG + Chr2:81875995-81876014 MsG0280011279.01.T01:CDS 35.0%
GAGCCAGTGTTTATGATTAT+GGG - Chr2:81875338-81875357 None:intergenic 35.0%
GAGGTTATGGAATATATTGG+TGG - Chr2:81875467-81875486 None:intergenic 35.0%
GATTCCAATTGCAGTAAATG+TGG - Chr2:81872592-81872611 None:intergenic 35.0%
GCTCTGATTCCAATATTGTA+AGG + Chr2:81875931-81875950 MsG0280011279.01.T01:CDS 35.0%
GGAATCATCTTTATCCCTAT+TGG + Chr2:81872606-81872625 MsG0280011279.01.T01:CDS 35.0%
GGTGGGAAAAATAGATTCTT+GGG + Chr2:81874142-81874161 MsG0280011279.01.T01:CDS 35.0%
GTAGAAATGATAAGCAGTTG+TGG + Chr2:81873364-81873383 MsG0280011279.01.T01:CDS 35.0%
GTGGGAAAAATAGATTCTTG+GGG + Chr2:81874143-81874162 MsG0280011279.01.T01:CDS 35.0%
GTGTTATCAATTACGGATCA+CGG + Chr2:81873038-81873057 MsG0280011279.01.T01:intron 35.0%
GTTCCCATAATCATAAACAC+TGG + Chr2:81875332-81875351 MsG0280011279.01.T01:intron 35.0%
TACAACACATACGAGTTTCA+AGG + Chr2:81874082-81874101 MsG0280011279.01.T01:CDS 35.0%
TACACTTCTCACAACTAGTT+TGG - Chr2:81875260-81875279 None:intergenic 35.0%
TAGAGTGTGGACAATAATCT+GGG + Chr2:81876070-81876089 MsG0280011279.01.T01:CDS 35.0%
TATACACTCATGTTCCATGT+TGG - Chr2:81874651-81874670 None:intergenic 35.0%
TATCATGGAACAGAAATCCA+GGG + Chr2:81874546-81874565 MsG0280011279.01.T01:intron 35.0%
TATGTTCGAAGCTATATGCA+GGG + Chr2:81876146-81876165 MsG0280011279.01.T01:CDS 35.0%
TCAGAATCAGAGAACTTAGT+GGG - Chr2:81875813-81875832 None:intergenic 35.0%
TGAGCCAGTGTTTATGATTA+TGG - Chr2:81875339-81875358 None:intergenic 35.0%
TGGTGGGAAAAATAGATTCT+TGG + Chr2:81874141-81874160 MsG0280011279.01.T01:CDS 35.0%
TTACAAAAAAATCGGCGATC+CGG + Chr2:81874750-81874769 MsG0280011279.01.T01:intron 35.0%
TTAGAGTGTGGACAATAATC+TGG + Chr2:81876069-81876088 MsG0280011279.01.T01:CDS 35.0%
TTATCATGGAACAGAAATCC+AGG + Chr2:81874545-81874564 MsG0280011279.01.T01:intron 35.0%
TTATCCAAATAGGGACTTAC+AGG - Chr2:81873654-81873673 None:intergenic 35.0%
TTCAAAAGTTGTGGCTATTG+AGG + Chr2:81876004-81876023 MsG0280011279.01.T01:CDS 35.0%
! ACACTTCTCACAACTAGTTT+GGG - Chr2:81875259-81875278 None:intergenic 35.0%
! ATCATTGTTTTCATCAGGGA+AGG + Chr2:81872635-81872654 MsG0280011279.01.T01:CDS 35.0%
! CCTAAAAATTTTCAGAGTGG+AGG + Chr2:81873594-81873613 MsG0280011279.01.T01:CDS 35.0%
! CTTGCATCATTGTTTTCATC+AGG + Chr2:81872630-81872649 MsG0280011279.01.T01:CDS 35.0%
! GAAGTTTTCTTTGAATTGGG+AGG - Chr2:81871989-81872008 None:intergenic 35.0%
! GACAATAATCTGGGATAACA+AGG + Chr2:81876079-81876098 MsG0280011279.01.T01:CDS 35.0%
! TGGTTCTATCAACTACAACT+TGG + Chr2:81874116-81874135 MsG0280011279.01.T01:CDS 35.0%
! TTAGTGCATGTTTGAAACCA+CGG + Chr2:81872381-81872400 MsG0280011279.01.T01:intron 35.0%
! TTTCCTTCTGTTTTGTCTAC+TGG - Chr2:81873426-81873445 None:intergenic 35.0%
!! ACTTGAAGGAGCATCATTAA+TGG + Chr2:81874991-81875010 MsG0280011279.01.T01:intron 35.0%
!! CCATACAGTTTTCTGAAAGT+TGG - Chr2:81874004-81874023 None:intergenic 35.0%
!! CCTCCACTCTGAAAATTTTT+AGG - Chr2:81873597-81873616 None:intergenic 35.0%
!!! AGACATCATTTTAAGATCCC+TGG - Chr2:81874566-81874585 None:intergenic 35.0%
AACCAATTCTAACACCTGGA+TGG + Chr2:81872331-81872350 MsG0280011279.01.T01:CDS 40.0%
AACTGCATCTTTAGCATCAG+AGG - Chr2:81872794-81872813 None:intergenic 40.0%
ACACATACGAGTTTCAAGGT+AGG + Chr2:81874086-81874105 MsG0280011279.01.T01:CDS 40.0%
ACCAATTCTAACACCTGGAT+GGG + Chr2:81872332-81872351 MsG0280011279.01.T01:CDS 40.0%
ACTGCATCTTTAGCATCAGA+GGG - Chr2:81872793-81872812 None:intergenic 40.0%
AGAAATACTAATGCAGGTGG+TGG + Chr2:81872732-81872751 MsG0280011279.01.T01:intron 40.0%
AGATGGGACAAATTGTGGAT+TGG + Chr2:81874804-81874823 MsG0280011279.01.T01:intron 40.0%
AGCTGCATAAACAGTGTCAT+TGG - Chr2:81876033-81876052 None:intergenic 40.0%
AGTGATGTTGAGGAGATGAA+TGG - Chr2:81875785-81875804 None:intergenic 40.0%
AGTTCTTTGTGTGACCAACA+TGG + Chr2:81874634-81874653 MsG0280011279.01.T01:intron 40.0%
ATGTGATCAAGCCAAGGTAA+AGG + Chr2:81874227-81874246 MsG0280011279.01.T01:intron 40.0%
CACAGTGGTAAGTTGTTTGT+AGG - Chr2:81875839-81875858 None:intergenic 40.0%
CATAAAAGCAGCTCACCAAA+TGG - Chr2:81874965-81874984 None:intergenic 40.0%
CATACCTGTAAGTCCCTATT+TGG + Chr2:81873647-81873666 MsG0280011279.01.T01:intron 40.0%
CTATCCTTGTTCTGTGCTAT+AGG + Chr2:81874190-81874209 MsG0280011279.01.T01:CDS 40.0%
CTATGTTCGAAGCTATATGC+AGG + Chr2:81876145-81876164 MsG0280011279.01.T01:CDS 40.0%
CTCAGAATCAGAGAACTTAG+TGG - Chr2:81875814-81875833 None:intergenic 40.0%
CTGTTCCATGATAAGTAGGA+TGG - Chr2:81874539-81874558 None:intergenic 40.0%
GAATCCTATAGCACAGAACA+AGG - Chr2:81874197-81874216 None:intergenic 40.0%
GACACTGTTTATGCAGCTTA+TGG + Chr2:81876035-81876054 MsG0280011279.01.T01:CDS 40.0%
GATCCAGTAGACAAAACAGA+AGG + Chr2:81873420-81873439 MsG0280011279.01.T01:CDS 40.0%
GATGGGACAAATTGTGGATT+GGG + Chr2:81874805-81874824 MsG0280011279.01.T01:intron 40.0%
GCTACTATTCCTAAGACACT+TGG + Chr2:81876122-81876141 MsG0280011279.01.T01:CDS 40.0%
GTGGGAAAATAGTGATGTTG+AGG - Chr2:81875795-81875814 None:intergenic 40.0%
GTTGCATATTATACCCATCC+AGG - Chr2:81872348-81872367 None:intergenic 40.0%
GTTTATGCAGCTTATGGTGA+TGG + Chr2:81876041-81876060 MsG0280011279.01.T01:CDS 40.0%
GTTTCAAGGTAGGAAGAAGT+TGG + Chr2:81874096-81874115 MsG0280011279.01.T01:CDS 40.0%
TAACCGTTTCCTGACTTATC+TGG - Chr2:81875034-81875053 None:intergenic 40.0%
TCATTGAAAATCGTGCTGTG+TGG - Chr2:81873223-81873242 None:intergenic 40.0%
TCCATAGCATTATCATCGAG+TGG + Chr2:81875894-81875913 MsG0280011279.01.T01:intron 40.0%
TCTTCTGTCTTGAGAAACGA+CGG + Chr2:81875861-81875880 MsG0280011279.01.T01:intron 40.0%
TGAACATACTCCATGCAATG+AGG - Chr2:81873470-81873489 None:intergenic 40.0%
TGACCGTTTGAAAGAGCTTA+TGG - Chr2:81873835-81873854 None:intergenic 40.0%
TGGAAACCAATTCTAACACC+TGG + Chr2:81872327-81872346 MsG0280011279.01.T01:CDS 40.0%
TTAATGCCACCAGATAAGTC+AGG + Chr2:81875022-81875041 MsG0280011279.01.T01:intron 40.0%
TTCTGTATGTGATCAAGCCA+AGG + Chr2:81874221-81874240 MsG0280011279.01.T01:CDS 40.0%
TTTCAGAGTGGAGGTTTGAT+TGG + Chr2:81873603-81873622 MsG0280011279.01.T01:CDS 40.0%
! ACCACTCGATGATAATGCTA+TGG - Chr2:81875898-81875917 None:intergenic 40.0%
! ACTGTTGTTGTTGTGAACTG+TGG - Chr2:81875678-81875697 None:intergenic 40.0%
! CACTTCTCACAACTAGTTTG+GGG - Chr2:81875258-81875277 None:intergenic 40.0%
! CTTGGAAAATTTAGGGCTTG+AGG + Chr2:81872202-81872221 MsG0280011279.01.T01:intron 40.0%
! GTTAGAATTGGTTTCCATGC+AGG - Chr2:81872324-81872343 None:intergenic 40.0%
! TCAACTACAACTTGGATTGG+TGG + Chr2:81874124-81874143 MsG0280011279.01.T01:CDS 40.0%
! TTTTGTCTACTGGATCACAG+TGG - Chr2:81873416-81873435 None:intergenic 40.0%
!! ATTGCATACCTTGTTGTTGG+TGG + Chr2:81874166-81874185 MsG0280011279.01.T01:CDS 40.0%
!! CAACTACAACTTGGATTGGT+GGG + Chr2:81874125-81874144 MsG0280011279.01.T01:CDS 40.0%
!!! GGACATGAGAGTTTTGAGAA+AGG - Chr2:81875734-81875753 None:intergenic 40.0%
AAGGAGCCAATTGTTCCTTG+TGG + Chr2:81873444-81873463 MsG0280011279.01.T01:CDS 45.0%
ACAAGACTTGCACCCACAAA+TGG + Chr2:81872839-81872858 MsG0280011279.01.T01:CDS 45.0%
ACCCATCCAGGTGTTAGAAT+TGG - Chr2:81872336-81872355 None:intergenic 45.0%
AGGATAGTCCACCAACAACA+AGG - Chr2:81874177-81874196 None:intergenic 45.0%
ATGAGGCCACAAGGAACAAT+TGG - Chr2:81873453-81873472 None:intergenic 45.0%
CCACCAGATAAGTCAGGAAA+CGG + Chr2:81875028-81875047 MsG0280011279.01.T01:intron 45.0%
CGAACATAGCCAAGTGTCTT+AGG - Chr2:81876134-81876153 None:intergenic 45.0%
CTACCTGAGTTCACTGAATG+TGG + Chr2:81875963-81875982 MsG0280011279.01.T01:CDS 45.0%
GCATCAGTTGAGTGAACAAG+AGG + Chr2:81873946-81873965 MsG0280011279.01.T01:intron 45.0%
GGGATCCATCCTACTTATCA+TGG + Chr2:81874531-81874550 MsG0280011279.01.T01:intron 45.0%
GGGTTAGATGGGACAAATTG+TGG + Chr2:81874799-81874818 MsG0280011279.01.T01:intron 45.0%
GTCGTTTCTCAAGACAGAAG+AGG - Chr2:81875862-81875881 None:intergenic 45.0%
GTGATGGCAAGATTAGAGTG+TGG + Chr2:81876057-81876076 MsG0280011279.01.T01:CDS 45.0%
TACAGGCTCCGTAAATCACA+AGG - Chr2:81872173-81872192 None:intergenic 45.0%
TCGAGTGGTTTACTCTACAC+AGG + Chr2:81875909-81875928 MsG0280011279.01.T01:intron 45.0%
TGAAGACTGCGTGAGAAAGT+TGG - Chr2:81875755-81875774 None:intergenic 45.0%
TGATATTGTCAAACTCGCCG+TGG - Chr2:81872401-81872420 None:intergenic 45.0%
TGTCCACATTCAGTGAACTC+AGG - Chr2:81875969-81875988 None:intergenic 45.0%
TGTGGAGAAAGTCAGCTGAA+GGG + Chr2:81873382-81873401 MsG0280011279.01.T01:CDS 45.0%
TTGTGGAGAAAGTCAGCTGA+AGG + Chr2:81873381-81873400 MsG0280011279.01.T01:CDS 45.0%
! CTCTTTTTGCAGACCTCTTG+GGG + Chr2:81874511-81874530 MsG0280011279.01.T01:intron 45.0%
! GCTCTTTTTGCAGACCTCTT+GGG + Chr2:81874510-81874529 MsG0280011279.01.T01:intron 45.0%
! GGGATTGCATACCTTGTTGT+TGG + Chr2:81874163-81874182 MsG0280011279.01.T01:CDS 45.0%
! TGCTCTTTTTGCAGACCTCT+TGG + Chr2:81874509-81874528 MsG0280011279.01.T01:intron 45.0%
AAGTAGGATGGATCCCCAAG+AGG - Chr2:81874527-81874546 None:intergenic 50.0%
CACAGCAAGAACTACCTGCA+TGG + Chr2:81872307-81872326 MsG0280011279.01.T01:CDS 50.0%
CAGAGTGGAGGTTTGATTGG+AGG + Chr2:81873606-81873625 MsG0280011279.01.T01:CDS 50.0%
CCGTTTCCTGACTTATCTGG+TGG - Chr2:81875031-81875050 None:intergenic 50.0%
TTCCTTGTGGCCTCATTGCA+TGG + Chr2:81873457-81873476 MsG0280011279.01.T01:CDS 50.0%
! TCAAGACAGAAGAGGCACAG+TGG - Chr2:81875854-81875873 None:intergenic 50.0%
!! GTGGGTGCAAGTCTTGTTAG+TGG - Chr2:81872836-81872855 None:intergenic 50.0%
CTCCATGCAATGAGGCCACA+AGG - Chr2:81873462-81873481 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 81871950 81876184 81871950 ID=MsG0280011279.01;Name=MsG0280011279.01
Chr2 mRNA 81871950 81876184 81871950 ID=MsG0280011279.01.T01;Parent=MsG0280011279.01;Name=MsG0280011279.01.T01;_AED=0.43;_eAED=0.50;_QI=0|0|0|1|1|1|9|0|466
Chr2 exon 81871950 81872022 81871950 ID=MsG0280011279.01.T01:exon:12244;Parent=MsG0280011279.01.T01
Chr2 exon 81872295 81872353 81872295 ID=MsG0280011279.01.T01:exon:12245;Parent=MsG0280011279.01.T01
Chr2 exon 81872582 81872656 81872582 ID=MsG0280011279.01.T01:exon:12246;Parent=MsG0280011279.01.T01
Chr2 exon 81872748 81872864 81872748 ID=MsG0280011279.01.T01:exon:12247;Parent=MsG0280011279.01.T01
Chr2 exon 81872952 81873022 81872952 ID=MsG0280011279.01.T01:exon:12248;Parent=MsG0280011279.01.T01
Chr2 exon 81873353 81873653 81873353 ID=MsG0280011279.01.T01:exon:12249;Parent=MsG0280011279.01.T01
Chr2 exon 81873953 81874242 81873953 ID=MsG0280011279.01.T01:exon:12250;Parent=MsG0280011279.01.T01
Chr2 exon 81874328 81874488 81874328 ID=MsG0280011279.01.T01:exon:12251;Parent=MsG0280011279.01.T01
Chr2 exon 81875931 81876184 81875931 ID=MsG0280011279.01.T01:exon:12252;Parent=MsG0280011279.01.T01
Chr2 CDS 81871950 81872022 81871950 ID=MsG0280011279.01.T01:cds;Parent=MsG0280011279.01.T01
Chr2 CDS 81872295 81872353 81872295 ID=MsG0280011279.01.T01:cds;Parent=MsG0280011279.01.T01
Chr2 CDS 81872582 81872656 81872582 ID=MsG0280011279.01.T01:cds;Parent=MsG0280011279.01.T01
Chr2 CDS 81872748 81872864 81872748 ID=MsG0280011279.01.T01:cds;Parent=MsG0280011279.01.T01
Chr2 CDS 81872952 81873022 81872952 ID=MsG0280011279.01.T01:cds;Parent=MsG0280011279.01.T01
Chr2 CDS 81873353 81873653 81873353 ID=MsG0280011279.01.T01:cds;Parent=MsG0280011279.01.T01
Chr2 CDS 81873953 81874242 81873953 ID=MsG0280011279.01.T01:cds;Parent=MsG0280011279.01.T01
Chr2 CDS 81874328 81874488 81874328 ID=MsG0280011279.01.T01:cds;Parent=MsG0280011279.01.T01
Chr2 CDS 81875931 81876184 81875931 ID=MsG0280011279.01.T01:cds;Parent=MsG0280011279.01.T01
Gene Sequence

>MsG0280011279.01.T01

ATGATGGATATGACTTCATCAAAAGATGGACAATCTCCTCCCAATTCAAAGAAAACTTCAAAGAAACCTAAATATTCAAGATTCTCACAGCAAGAACTACCTGCATGGAAACCAATTCTAACACCTGGATGGGTGATTGCCACATTTACTGCAATTGGAATCATCTTTATCCCTATTGGTCTTGCATCATTGTTTTCATCAGGGAAGGTGGTGGAAGCTGAATTCAGATATGATGAAACGTGTCTTTCTCCCTCTGATGCTAAAGATGCAGTTGCATATATTAAAAGTGATACCACTAACAAGACTTGCACCCACAAATGGATTGTTGAGCAAAAAATGCAAGCTCCTGTTTTTATCTACTACCAGCTTGATAATTACTATCAAAATCATCGCCGATATGTTAAGAGTAGAAATGATAAGCAGTTGTGGAGAAAGTCAGCTGAAGGGCAAACAGACCACTGTGATCCAGTAGACAAAACAGAAGGAAAGGAGCCAATTGTTCCTTGTGGCCTCATTGCATGGAGTATGTTCAATGACACCTACAAATTTTCAATGGACAACAAGGATTTAACTGTCAACAAAAAGAACATAGCATGGGGAAGTGACAAAAATTCTAAATTTGGTCGTGAAGTTTATCCTAAAAATTTTCAGAGTGGAGGTTTGATTGGAGGTGCAAAACTCAATGAAAGCATACCTTTGAGTGAACAAGAGGATCTGATTGTTTGGATGAGAACAGCAGCATTACCAACTTTCAGAAAACTGTATGGGAAGATAGAGTCTGATCTTGAAGTTAATGATGAGATAGAAATACTAATTCAGAACAATTACAACACATACGAGTTTCAAGGTAGGAAGAAGTTGGTTCTATCAACTACAACTTGGATTGGTGGGAAAAATAGATTCTTGGGGATTGCATACCTTGTTGTTGGTGGACTATCCTTGTTCTGTGCTATAGGATTCATTCTTCTGTATGTGATCAAGCCAAGATGTGAAATGCTAGCGACACATTCTGTAACACTAGCATTTGAATACGCTCTTTTCTATTGGTTGAAATTGACAAGTTCTGATAAAATTTATGTTAGGAAATTAATATGGCTACATAGTAAAGAAAAGCTGAAACATTTTTGGTTATTTGTAAGTAGCAAATGCTCTGATTCCAATATTGTAAGGTGTTGGAAACTACCTGAGTTCACTGAATGTGGACAGTTGAAGACTAAAGCTTCAAAAGTTGTGGCTATTGAGGTTTCCAATGACACTGTTTATGCAGCTTATGGTGATGGCAAGATTAGAGTGTGGACAATAATCTGGGATAACAAGGTGTTGAAACATGTTCGATCTGCTACTATTCCTAAGACACTTGGCTATGTTCGAAGCTATATGCAGGGAAAGACAAGACAGTAA

Protein sequence

>MsG0280011279.01.T01

MMDMTSSKDGQSPPNSKKTSKKPKYSRFSQQELPAWKPILTPGWVIATFTAIGIIFIPIGLASLFSSGKVVEAEFRYDETCLSPSDAKDAVAYIKSDTTNKTCTHKWIVEQKMQAPVFIYYQLDNYYQNHRRYVKSRNDKQLWRKSAEGQTDHCDPVDKTEGKEPIVPCGLIAWSMFNDTYKFSMDNKDLTVNKKNIAWGSDKNSKFGREVYPKNFQSGGLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNTYEFQGRKKLVLSTTTWIGGKNRFLGIAYLVVGGLSLFCAIGFILLYVIKPRCEMLATHSVTLAFEYALFYWLKLTSSDKIYVRKLIWLHSKEKLKHFWLFVSSKCSDSNIVRCWKLPEFTECGQLKTKASKVVAIEVSNDTVYAAYGDGKIRVWTIIWDNKVLKHVRSATIPKTLGYVRSYMQGKTRQ*