AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025051.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025051.01.T01 MTR_8g445780 56.215 354 94 6 52 400 1 298 1.50e-124 365
MsG0580025051.01.T01 MTR_5g021550 91.358 162 11 1 52 210 1 162 1.25e-104 306
MsG0580025051.01.T01 MTR_8g014260 51.136 352 122 8 55 400 5 312 9.57e-102 310
MsG0580025051.01.T01 MTR_8g468810 44.321 361 145 8 52 401 1 316 3.34e-77 242
MsG0580025051.01.T01 MTR_8g468810 44.598 361 144 8 52 401 1 316 3.56e-77 243
MsG0580025051.01.T01 MTR_8g468810 44.915 354 139 8 52 394 1 309 5.00e-77 241
MsG0580025051.01.T01 MTR_8g468810 44.915 354 139 8 52 394 1 309 8.16e-76 240
MsG0580025051.01.T01 MTR_8g468810 44.915 354 139 8 52 394 1 309 1.06e-74 240
MsG0580025051.01.T01 MTR_8g058970 41.667 372 152 7 52 400 1 330 9.55e-72 233
MsG0580025051.01.T01 MTR_8g062270 42.566 343 145 7 70 403 16 315 7.80e-70 227
MsG0580025051.01.T01 MTR_2g083840 41.360 353 156 9 57 403 10 317 5.56e-68 222
MsG0580025051.01.T01 MTR_8g077460 48.485 264 90 5 67 325 7 229 6.03e-67 217
MsG0580025051.01.T01 MTR_8g468840 40.708 339 152 7 69 400 13 309 5.69e-64 212
MsG0580025051.01.T01 MTR_8g468760 42.357 314 128 8 65 368 2 272 6.30e-62 206
MsG0580025051.01.T01 MTR_5g092960 39.155 355 158 10 64 403 13 324 5.85e-60 200
MsG0580025051.01.T01 MTR_8g014160 40.688 349 150 9 66 402 37 340 2.27e-59 199
MsG0580025051.01.T01 MTR_5g092960 39.155 355 158 10 64 403 13 324 2.33e-59 200
MsG0580025051.01.T01 MTR_8g014290 62.914 151 47 2 69 210 9 159 2.10e-56 183
MsG0580025051.01.T01 MTR_8g467800 38.719 359 156 11 57 401 2 310 3.13e-55 186
MsG0580025051.01.T01 MTR_4g032730 39.769 347 150 11 64 400 9 306 1.55e-53 185
MsG0580025051.01.T01 MTR_8g467800 38.736 364 157 12 54 403 1 312 2.14e-53 184
MsG0580025051.01.T01 MTR_4g050250 36.436 376 164 11 54 401 5 333 1.54e-45 162
MsG0580025051.01.T01 MTR_4g024745 54.545 154 68 2 249 400 10 163 4.84e-45 157
MsG0580025051.01.T01 MTR_8g469020 36.991 319 137 11 70 369 7 280 2.51e-42 154
MsG0580025051.01.T01 MTR_4g024720 48.077 208 71 9 52 238 1 192 1.07e-41 146
MsG0580025051.01.T01 MTR_8g058965 36.890 328 137 12 65 369 4 284 3.65e-40 149
MsG0580025051.01.T01 MTR_4g024710 52.632 152 70 2 251 400 58 209 3.50e-39 144
MsG0580025051.01.T01 MTR_8g062310 37.304 319 119 15 70 381 25 269 3.38e-36 137
MsG0580025051.01.T01 MTR_8g070950 36.141 368 132 18 55 399 5 292 1.27e-34 133
MsG0580025051.01.T01 MTR_8g014210 65.591 93 32 0 308 400 1 93 5.65e-34 126
MsG0580025051.01.T01 MTR_8g467790 38.214 280 116 11 70 339 148 380 2.00e-33 131
MsG0580025051.01.T01 MTR_8g062010 35.161 310 133 12 69 369 8 258 6.46e-32 125
MsG0580025051.01.T01 MTR_8g062080 33.702 362 163 15 54 400 6 305 3.79e-30 121
MsG0580025051.01.T01 MTR_8g062300 32.390 318 155 14 64 369 20 289 8.09e-24 103
MsG0580025051.01.T01 MTR_4g024770 65.000 60 18 1 55 114 12 68 1.00e-17 77.8
MsG0580025051.01.T01 MTR_8g014180 68.421 57 15 2 55 111 5 58 9.92e-17 74.3
MsG0580025051.01.T01 MTR_1g041245 33.750 160 96 3 70 229 11 160 2.53e-16 80.5
MsG0580025051.01.T01 MTR_5g084070 26.979 341 184 12 66 401 9 289 6.66e-16 79.3
MsG0580025051.01.T01 MTR_7g032380 38.194 144 77 5 70 211 11 144 1.35e-15 77.8
MsG0580025051.01.T01 MTR_4g113810 29.208 202 86 6 159 351 11 164 1.52e-14 71.6
MsG0580025051.01.T01 MTR_4g056030 26.404 356 181 14 62 398 1 294 1.12e-13 72.8
MsG0580025051.01.T01 MTR_2g007500 31.276 243 107 8 59 300 3 186 1.43e-13 71.6
MsG0580025051.01.T01 MTR_5g083890 34.857 175 87 5 66 222 2 167 1.59e-13 72.4
MsG0580025051.01.T01 MTR_8g085430 32.903 155 77 4 70 211 11 151 2.99e-13 70.9
MsG0580025051.01.T01 MTR_5g080710 25.797 345 189 13 66 401 29 315 3.88e-13 71.2
MsG0580025051.01.T01 MTR_5g073420 29.060 234 113 7 70 299 11 195 5.03e-13 70.5
MsG0580025051.01.T01 MTR_7g115270 28.761 226 135 4 69 290 11 214 6.05e-13 70.1
MsG0580025051.01.T01 MTR_2g091145 32.558 172 103 6 52 215 1 167 8.70e-13 70.1
MsG0580025051.01.T01 MTR_7g056430 34.694 147 74 5 69 210 8 137 9.44e-13 70.5
MsG0580025051.01.T01 MTR_7g056420 34.694 147 74 5 69 210 8 137 1.01e-12 70.5
MsG0580025051.01.T01 MTR_4g092440 33.121 157 90 4 57 211 19 162 1.41e-12 69.3
MsG0580025051.01.T01 MTR_2g086020 32.456 228 116 10 98 299 4 219 1.76e-12 68.2
MsG0580025051.01.T01 MTR_4g092430 35.714 126 65 4 35 154 5 120 2.15e-12 68.9
MsG0580025051.01.T01 MTR_1g067190 32.653 147 86 4 64 210 9 142 2.25e-12 68.2
MsG0580025051.01.T01 MTR_4g092430 35.714 126 65 4 35 154 5 120 2.37e-12 68.9
MsG0580025051.01.T01 MTR_4g092440 33.121 157 90 4 57 211 19 162 2.61e-12 68.9
MsG0580025051.01.T01 MTR_3g023470 32.903 155 91 4 57 211 2 143 2.79e-12 68.2
MsG0580025051.01.T01 MTR_7g056447 35.374 147 74 5 69 210 8 138 2.88e-12 67.4
MsG0580025051.01.T01 MTR_3g113782 46.154 65 33 1 52 116 1 63 9.94e-12 61.2
MsG0580025051.01.T01 MTR_3g107100 30.719 153 90 7 64 211 5 146 1.03e-11 66.6
MsG0580025051.01.T01 MTR_1089s0010 34.014 147 79 6 70 211 8 141 1.44e-11 65.9
MsG0580025051.01.T01 MTR_1g016310 30.675 163 108 3 52 211 1 161 2.21e-11 65.1
MsG0580025051.01.T01 MTR_1g016310 30.675 163 108 3 52 211 1 161 2.43e-11 65.5
MsG0580025051.01.T01 MTR_4g051640 35.644 101 58 1 50 150 10 103 2.49e-11 62.0
MsG0580025051.01.T01 MTR_8g066650 35.220 159 80 6 57 210 67 207 2.49e-11 65.5
MsG0580025051.01.T01 MTR_5g061680 30.213 235 107 9 70 299 11 193 2.55e-11 64.7
MsG0580025051.01.T01 MTR_3g107160 28.226 248 118 10 63 303 4 198 2.57e-11 65.1
MsG0580025051.01.T01 MTR_7g056433 33.728 169 99 3 66 231 8 166 2.89e-11 65.1
MsG0580025051.01.T01 MTR_7g056277 30.573 157 98 4 65 218 254 402 3.69e-11 65.5
MsG0580025051.01.T01 MTR_3g036240 31.126 151 90 4 66 215 11 148 4.35e-11 64.3
MsG0580025051.01.T01 MTR_7g056287 30.719 153 95 4 69 218 2 146 4.63e-11 64.3
MsG0580025051.01.T01 MTR_3g023330 29.870 154 96 5 57 210 2 143 4.63e-11 64.3
MsG0580025051.01.T01 MTR_7g021630 32.075 159 87 4 58 216 5 142 5.91e-11 63.9
MsG0580025051.01.T01 MTR_1g013840 31.737 167 102 5 54 214 42 202 6.03e-11 64.3
MsG0580025051.01.T01 MTR_2g082800 33.582 134 80 4 56 189 17 141 6.20e-11 64.3
MsG0580025051.01.T01 MTR_7g034115 36.301 146 76 6 70 211 11 143 6.70e-11 63.9
MsG0580025051.01.T01 MTR_6g011460 33.333 135 83 2 70 201 46 176 6.77e-11 63.9
MsG0580025051.01.T01 MTR_7g021630 32.075 159 87 4 58 216 5 142 7.11e-11 63.5
MsG0580025051.01.T01 MTR_7g034110 33.333 123 71 2 68 189 9 121 7.32e-11 63.5
MsG0580025051.01.T01 MTR_3g463830 31.818 154 90 3 60 211 53 193 7.92e-11 63.5
MsG0580025051.01.T01 MTR_4g014260 33.750 160 87 6 54 211 12 154 8.11e-11 63.9
MsG0580025051.01.T01 MTR_1g094760 29.412 170 95 4 49 211 5 156 8.15e-11 64.3
MsG0580025051.01.T01 MTR_1g115245 28.402 169 107 5 46 210 2 160 9.63e-11 62.8
MsG0580025051.01.T01 MTR_4g014260 33.750 160 87 6 54 211 12 154 9.66e-11 63.5
MsG0580025051.01.T01 MTR_1g011410 27.778 180 117 5 34 207 274 446 9.94e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025051.01.T01 AT1G06630 30.619 307 157 10 70 368 12 270 3.12e-22 96.7
MsG0580025051.01.T01 AT1G06630 30.619 307 157 10 70 368 12 270 4.60e-22 97.1
MsG0580025051.01.T01 AT1G06630 30.619 307 157 10 70 368 12 270 4.60e-22 97.1
MsG0580025051.01.T01 AT1G06630 30.462 325 167 11 52 368 6 279 4.64e-22 97.8
MsG0580025051.01.T01 AT1G06630 30.619 307 157 10 70 368 12 270 1.15e-21 96.3
MsG0580025051.01.T01 AT1G06630 30.619 307 157 10 70 368 12 270 1.15e-21 96.3
MsG0580025051.01.T01 AT1G06630 30.619 307 157 10 70 368 12 270 1.15e-21 96.3
MsG0580025051.01.T01 AT1G06630 30.619 307 157 10 70 368 12 270 1.15e-21 96.3
MsG0580025051.01.T01 AT1G06630 30.619 307 157 10 70 368 12 270 2.78e-21 95.9
MsG0580025051.01.T01 AT4G00160 28.696 345 178 12 68 403 14 299 8.20e-21 94.4
MsG0580025051.01.T01 AT4G26340 29.377 337 175 13 70 401 2 280 1.11e-19 90.9
MsG0580025051.01.T01 AT3G26922 28.814 354 184 12 58 403 2 295 2.50e-18 85.5
MsG0580025051.01.T01 AT3G26922 28.814 354 184 12 58 403 2 295 2.50e-18 85.5
MsG0580025051.01.T01 AT4G09920 28.302 318 164 14 70 377 2 265 1.42e-17 82.8
MsG0580025051.01.T01 AT4G09920 28.302 318 164 14 70 377 2 265 1.42e-17 82.8
MsG0580025051.01.T01 AT4G09920 28.302 318 164 14 70 377 2 265 1.42e-17 82.8
MsG0580025051.01.T01 AT4G10400 28.399 331 173 14 70 395 2 273 3.65e-17 83.2
MsG0580025051.01.T01 AT4G10400 28.399 331 173 14 70 395 2 273 3.65e-17 83.2
MsG0580025051.01.T01 AT4G10400 28.399 331 173 14 70 395 2 273 3.65e-17 83.2
MsG0580025051.01.T01 AT4G09920 28.302 318 164 14 70 377 2 265 4.38e-17 82.0
MsG0580025051.01.T01 AT4G09920 28.302 318 164 14 70 377 2 265 4.38e-17 82.0
MsG0580025051.01.T01 AT5G38590 27.869 305 159 14 70 367 2 252 5.14e-17 81.3
MsG0580025051.01.T01 AT5G56370 29.180 305 153 10 70 368 2 249 5.19e-17 81.6
MsG0580025051.01.T01 AT5G56370 29.180 305 153 10 70 368 2 249 6.30e-17 82.4
MsG0580025051.01.T01 AT5G56370 29.180 305 153 10 70 368 2 249 6.30e-17 82.4
MsG0580025051.01.T01 AT1G16930 25.070 355 198 12 62 401 7 308 1.53e-16 81.6
MsG0580025051.01.T01 AT1G16930 25.070 355 198 12 62 401 7 308 1.53e-16 81.6
MsG0580025051.01.T01 AT1G16930 25.070 355 198 12 62 401 7 308 1.53e-16 81.6
MsG0580025051.01.T01 AT5G38590 27.869 305 159 14 70 367 2 252 1.67e-16 81.3
MsG0580025051.01.T01 AT5G56440 30.195 308 154 14 70 368 2 257 2.00e-16 81.3
MsG0580025051.01.T01 AT3G52680 27.913 369 187 16 44 403 4 302 2.13e-16 80.5
MsG0580025051.01.T01 AT5G41840 26.064 376 206 12 58 401 4 339 2.96e-16 80.9
MsG0580025051.01.T01 AT5G56420 27.536 345 177 14 70 403 6 288 3.86e-16 80.1
MsG0580025051.01.T01 AT5G56420 27.536 345 177 14 70 403 6 288 3.86e-16 80.1
MsG0580025051.01.T01 AT5G56420 27.536 345 177 14 70 403 6 288 3.86e-16 80.1
MsG0580025051.01.T01 AT3G49040 26.000 350 182 12 67 403 14 299 4.15e-16 79.0
MsG0580025051.01.T01 AT3G52680 27.913 369 187 16 44 403 4 302 4.20e-16 80.1
MsG0580025051.01.T01 AT3G51530 29.619 341 176 12 68 403 28 309 1.04e-15 79.0
MsG0580025051.01.T01 AT4G13965 29.971 347 165 16 68 403 8 287 4.27e-15 77.0
MsG0580025051.01.T01 AT2G26860 29.841 315 148 16 70 368 2 259 2.15e-14 74.7
MsG0580025051.01.T01 AT2G26860 29.841 315 148 16 70 368 2 259 2.15e-14 74.7
MsG0580025051.01.T01 AT4G14103 27.331 311 164 10 68 368 6 264 6.17e-14 73.2
MsG0580025051.01.T01 AT4G14103 27.331 311 164 10 68 368 6 264 6.17e-14 73.2
MsG0580025051.01.T01 AT4G14103 27.508 309 162 10 70 368 8 264 9.21e-14 73.2
MsG0580025051.01.T01 AT2G04230 28.655 342 187 10 68 402 11 302 2.52e-13 71.6
MsG0580025051.01.T01 AT3G59200 36.735 147 77 6 70 211 7 142 5.73e-13 70.1
MsG0580025051.01.T01 AT3G59200 36.735 147 77 6 70 211 7 142 1.29e-12 69.7
MsG0580025051.01.T01 AT2G26030 24.862 362 185 15 68 401 2 304 4.10e-12 68.2
MsG0580025051.01.T01 AT4G00315 28.920 287 140 13 70 345 2 235 4.25e-12 67.8
MsG0580025051.01.T01 AT2G26030 24.862 362 185 15 68 401 2 304 4.27e-12 67.8
MsG0580025051.01.T01 AT2G26030 24.862 362 185 15 68 401 2 304 4.27e-12 67.8
MsG0580025051.01.T01 AT5G60610 26.282 312 160 12 70 372 2 252 5.69e-12 67.4
MsG0580025051.01.T01 AT5G60610 26.282 312 160 12 70 372 2 252 5.69e-12 67.4
MsG0580025051.01.T01 AT4G15060 25.378 331 179 13 64 377 20 299 7.04e-12 67.0
MsG0580025051.01.T01 AT5G56560 25.648 347 186 14 67 403 2 286 1.12e-11 66.6
MsG0580025051.01.T01 AT1G51370 32.298 161 92 6 52 211 1 145 1.13e-11 66.2
MsG0580025051.01.T01 AT3G59190 27.103 321 172 11 54 364 1 269 1.50e-11 66.2
MsG0580025051.01.T01 AT2G39415 39.785 93 44 3 67 158 35 116 1.54e-11 61.6
MsG0580025051.01.T01 AT1G51370 32.298 161 92 6 52 211 1 145 1.62e-11 65.9
MsG0580025051.01.T01 AT1G51370 32.298 161 92 6 52 211 1 145 1.95e-11 65.9
MsG0580025051.01.T01 AT3G59190 27.103 321 172 11 54 364 1 269 2.08e-11 65.5
MsG0580025051.01.T01 AT5G38590 31.469 143 86 6 70 211 2 133 3.28e-11 63.9
MsG0580025051.01.T01 AT4G26350 28.814 236 110 9 70 301 2 183 4.40e-11 64.7
MsG0580025051.01.T01 AT3G58940 35.256 156 90 6 70 217 2 154 6.87e-11 64.7
MsG0580025051.01.T01 AT3G58940 35.256 156 90 6 70 217 2 154 6.87e-11 64.7

Find 108 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCAAATCTAGAAATTC+TGG 0.245669 5:+13275600 MsG0580025051.01.T01:CDS
AACCTCTTTGGCGCTCTCTA+TGG 0.247361 5:+13275865 MsG0580025051.01.T01:CDS
ATGTGATTTGGGTAATATTA+AGG 0.247933 5:-13275747 None:intergenic
TCTGTGAATGCACTTCTTGA+TGG 0.277751 5:+13275577 MsG0580025051.01.T01:CDS
GTCCCTTTGCACAACCTCTT+TGG 0.292189 5:+13275853 MsG0580025051.01.T01:CDS
AACCTTCGCCGAATGTGATT+TGG 0.296864 5:-13275759 None:intergenic
CGCAAAGTTTATCCAAGCTT+TGG 0.298408 5:-13275639 None:intergenic
TCCGTAATCCCCGCGCTATT+CGG 0.351009 5:+13274403 MsG0580025051.01.T01:CDS
ACCTTCGCCGAATGTGATTT+GGG 0.356533 5:-13275758 None:intergenic
GGCGGTAGAAATGGAGGTTT+TGG 0.387394 5:-13274241 None:intergenic
GCAAAGTTTATCCAAGCTTT+GGG 0.387401 5:-13275638 None:intergenic
AGAAAGGCGGGCGGTAGAAA+TGG 0.397788 5:-13274250 None:intergenic
CTAGCCGGTGGCGTCACCTC+TGG 0.398322 5:+13274271 MsG0580025051.01.T01:CDS
TCCGAATAGCGCGGGGATTA+CGG 0.404402 5:-13274404 None:intergenic
CTCGGACCGGCCGGTCGGAC+CGG 0.411714 5:-13273572 None:intergenic
GAATGATGTTGGGGCTTACT+TGG 0.419052 5:+13275699 MsG0580025051.01.T01:CDS
GCCTGAGTGAAACTAGATTA+GGG 0.436014 5:-13274587 None:intergenic
ACTTGGGTTCGTGCTGCTGT+TGG 0.441216 5:+13274480 MsG0580025051.01.T01:CDS
GCGTCCCGCCTTCCGTGAAA+AGG 0.441870 5:+13275659 MsG0580025051.01.T01:CDS
AAACGAAGAAAACCGGTAAC+GGG 0.444419 5:+13274144 MsG0580025051.01.T01:CDS
ATCCAAATGTTGGCTCGAAC+CGG 0.445823 5:+13273525 None:intergenic
CGCCAAAGAGGTTGTGCAAA+GGG 0.453204 5:-13275855 None:intergenic
ACCTCTTTGGCGCTCTCTAT+GGG 0.453922 5:+13275866 MsG0580025051.01.T01:CDS
GGACCGGTCGGACCGTGAAC+CGG 0.467011 5:-13273556 None:intergenic
AATATTACCCAAATCACATT+CGG 0.467774 5:+13275751 MsG0580025051.01.T01:CDS
CACATATTCGTGGGAGTCAT+CGG 0.471031 5:-13274319 None:intergenic
TCACCATTGAGAATGATGTT+GGG 0.472402 5:+13275689 MsG0580025051.01.T01:CDS
GGTGACGCCACCGGCTAGAA+AGG 0.473586 5:-13274266 None:intergenic
GTGAATACTCAGTGGAGACT+TGG 0.476588 5:+13274463 MsG0580025051.01.T01:CDS
ATCACCATTGAGAATGATGT+TGG 0.479824 5:+13275688 MsG0580025051.01.T01:CDS
TGCCTGAGTGAAACTAGATT+AGG 0.480420 5:-13274588 None:intergenic
CTACCGCCCGCCTTTCTAGC+CGG 0.482109 5:+13274256 MsG0580025051.01.T01:CDS
GATGTGTTTCCCACATCACT+TGG 0.489431 5:+13275823 MsG0580025051.01.T01:CDS
AGATACGCTTCCACCACATT+GGG 0.491396 5:-13275799 None:intergenic
CCGGCTTACCCACCGGTTCA+CGG 0.492318 5:+13273544 MsG0580025051.01.T01:CDS
CACGGTCCGACCGGTCCGAC+CGG 0.493549 5:+13273562 MsG0580025051.01.T01:CDS
GTCCGACCGGTCCGACCGGC+CGG 0.498126 5:+13273566 MsG0580025051.01.T01:CDS
TGTTTGTACGCCAGTCTCTC+CGG 0.501364 5:+13275463 MsG0580025051.01.T01:intron
ATCGTCCAAACGAAGAAAAC+CGG 0.504847 5:+13274137 MsG0580025051.01.T01:CDS
ATATTAAGGTATTGAAGATC+CGG 0.505075 5:-13275733 None:intergenic
GATGATCAACATTGGTTATG+TGG 0.506783 5:+13275546 MsG0580025051.01.T01:CDS
CCGGTGGCGTCACCTCTGGC+AGG 0.514475 5:+13274275 MsG0580025051.01.T01:CDS
CGATGACTCCCACGAATATG+TGG 0.514638 5:+13274320 MsG0580025051.01.T01:CDS
CAAACGAAGAAAACCGGTAA+CGG 0.517036 5:+13274143 MsG0580025051.01.T01:CDS
GGGCATGAGAAGAGGGTTTG+CGG 0.517465 5:-13274567 None:intergenic
ACTTATCGTCGGAGAAGGAA+TGG 0.519367 5:-13274437 None:intergenic
CCGTGAACCGGTGGGTAAGC+CGG 0.521609 5:-13273544 None:intergenic
CTGGTTGGTCCACATATTCG+TGG 0.523434 5:-13274329 None:intergenic
CCGGTCGGACCGTGAACCGG+TGG 0.531472 5:-13273553 None:intergenic
TCTTGAAACGTTCCGCTGGT+TGG 0.531932 5:-13274344 None:intergenic
ACGCCACCGGCTAGAAAGGC+GGG 0.534647 5:-13274262 None:intergenic
AAGATACGCTTCCACCACAT+TGG 0.536393 5:-13275800 None:intergenic
GACCGGCCGGTCGGACCGGT+CGG 0.538085 5:-13273568 None:intergenic
GCTCGAACCGGCTTACCCAC+CGG 0.540015 5:+13273537 MsG0580025051.01.T01:CDS
ACTCATCTTCCGAATAGCGC+GGG 0.540301 5:-13274412 None:intergenic
GTTTGCGGTAGCTTGAAGTC+GGG 0.540332 5:-13274552 None:intergenic
CCACCGGTTCACGGTCCGAC+CGG 0.540841 5:+13273553 MsG0580025051.01.T01:CDS
ATCATCAACATCTTTAGTGA+TGG 0.542370 5:-13275529 None:intergenic
ATGTGGTTCAAAACACCGTC+GGG 0.542585 5:-13274201 None:intergenic
ACCCAAATCACATTCGGCGA+AGG 0.544081 5:+13275757 MsG0580025051.01.T01:CDS
CAGACTCGGCTCGGACCGGC+CGG 0.545697 5:-13273581 None:intergenic
AAGCTCTTGAAACGTTCCGC+TGG 0.545919 5:-13274348 None:intergenic
CCTGCCAGAGGTGACGCCAC+CGG 0.548538 5:-13274275 None:intergenic
CTCGGCTCGGACCGGCCGGT+CGG 0.548957 5:-13273577 None:intergenic
GGTTTGCGGTAGCTTGAAGT+CGG 0.553675 5:-13274553 None:intergenic
CACCATTGAGAATGATGTTG+GGG 0.556110 5:+13275690 MsG0580025051.01.T01:CDS
TAGATTAGGGCATGAGAAGA+GGG 0.558634 5:-13274574 None:intergenic
AACTAACAACCGTAGAGTGT+TGG 0.559297 5:-13275504 None:intergenic
AGCCCCAACATCATTCTCAA+TGG 0.559977 5:-13275692 None:intergenic
TGAATACTCAGTGGAGACTT+GGG 0.561174 5:+13274464 MsG0580025051.01.T01:CDS
ACGAAACTTATCGTCGGAGA+AGG 0.562389 5:-13274442 None:intergenic
TGTAAGCATCCAACACTCTA+CGG 0.564023 5:+13275495 MsG0580025051.01.T01:CDS
GACGATGGAACCAAGTGATG+TGG 0.565688 5:-13275833 None:intergenic
TAGGGAGCAATGAGAGGATG+TGG 0.567797 5:-13274218 None:intergenic
GACGCCACCGGCTAGAAAGG+CGG 0.575636 5:-13274263 None:intergenic
AAGCTCGAGTTCATGAAGGT+GGG 0.586657 5:-13274505 None:intergenic
TGGTTGGTCCACATATTCGT+GGG 0.591207 5:-13274328 None:intergenic
TAAGCTCGAGTTCATGAAGG+TGG 0.594330 5:-13274506 None:intergenic
CTAGATTAGGGCATGAGAAG+AGG 0.595908 5:-13274575 None:intergenic
AGCTCGAGTTCATGAAGGTG+GGG 0.597739 5:-13274504 None:intergenic
GCGCCAAAGAGGTTGTGCAA+AGG 0.598386 5:-13275856 None:intergenic
ACACAACAACAACCACAGAA+AGG 0.602378 5:-13274680 None:intergenic
GAGTAAGCTCGAGTTCATGA+AGG 0.609936 5:-13274509 None:intergenic
TCCCATAGAGAGCGCCAAAG+AGG 0.610065 5:-13275867 None:intergenic
GATGCTTACATGAACTGCAC+CGG 0.612265 5:-13275482 None:intergenic
AAGATGTTGATGATCAACAT+TGG 0.618238 5:+13275538 MsG0580025051.01.T01:CDS
ACGATGGAACCAAGTGATGT+GGG 0.620386 5:-13275832 None:intergenic
TTACTTGGAAGTAAATGCAC+CGG 0.621805 5:+13275714 MsG0580025051.01.T01:CDS
CAAACTTAAACAAATACTGA+AGG 0.623230 5:-13274703 None:intergenic
GCCCTAATCTAGTTTCACTC+AGG 0.626715 5:+13274586 MsG0580025051.01.T01:CDS
GTCATCGGAGAAGTGAAGAA+CGG 0.631268 5:-13274304 None:intergenic
GAGGTTGTGCAAAGGGACGA+TGG 0.633691 5:-13275848 None:intergenic
CCGCCCGCCTTTCTAGCCGG+TGG 0.634816 5:+13274259 MsG0580025051.01.T01:CDS
GATGTGGTTCAAAACACCGT+CGG 0.642980 5:-13274202 None:intergenic
AAGGCGGGCGGTAGAAATGG+AGG 0.645811 5:-13274247 None:intergenic
GACTCATCTTCCGAATAGCG+CGG 0.648152 5:-13274413 None:intergenic
GTTGAGTCGTTCAACAACCA+AGG 0.649460 5:+13275903 MsG0580025051.01.T01:CDS
CGGTCGGACCGTGAACCGGT+GGG 0.659601 5:-13273552 None:intergenic
GTACAACTTGCCCAATGTGG+TGG 0.661456 5:+13275789 MsG0580025051.01.T01:CDS
CTCATCTTCCGAATAGCGCG+GGG 0.665515 5:-13274411 None:intergenic
GTATTCACGAAACTTATCGT+CGG 0.684183 5:-13274448 None:intergenic
CTTGTACAACTTGCCCAATG+TGG 0.684396 5:+13275786 MsG0580025051.01.T01:CDS
CGAATATGTGGACCAACCAG+CGG 0.689581 5:+13274332 MsG0580025051.01.T01:CDS
GAACGGAGAGATCCTGCCAG+AGG 0.691358 5:-13274287 None:intergenic
TAAGTTTCGTGAATACTCAG+TGG 0.695690 5:+13274455 MsG0580025051.01.T01:CDS
AGAATCAGCTACTTACCCGA+CGG 0.696285 5:+13274186 MsG0580025051.01.T01:CDS
GAATAGCGCGGGGATTACGG+AGG 0.699280 5:-13274401 None:intergenic
CCACCGGCTAGAAAGGCGGG+CGG 0.719880 5:-13274259 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCTATTAAATTACTTTT+TGG - Chr5:13273771-13273790 None:intergenic 10.0%
!!! TATCTATTAAATTACTTTTT+GGG - Chr5:13273770-13273789 None:intergenic 10.0%
!!! AATATACTAGTTTTTACTTT+TGG - Chr5:13275399-13275418 None:intergenic 15.0%
!! TATATTAGACCATTTCAATA+TGG + Chr5:13275282-13275301 MsG0580025051.01.T01:intron 20.0%
!!! AAATTTGTTCATGTTGAAAA+TGG - Chr5:13275349-13275368 None:intergenic 20.0%
!!! ACTAGTATATTTGATTTGTT+TGG + Chr5:13275408-13275427 MsG0580025051.01.T01:intron 20.0%
!!! ATTACTTTTTGGGTTAAATA+AGG - Chr5:13273760-13273779 None:intergenic 20.0%
!!! TTTCAACATGAACAAATTTT+AGG + Chr5:13275350-13275369 MsG0580025051.01.T01:intron 20.0%
! AATATTACCCAAATCACATT+CGG + Chr5:13275751-13275770 MsG0580025051.01.T01:CDS 25.0%
! AGTAAGAAATGGAAAAAAGA+AGG + Chr5:13273871-13273890 MsG0580025051.01.T01:intron 25.0%
! CAAACTTAAACAAATACTGA+AGG - Chr5:13274706-13274725 None:intergenic 25.0%
! CTAAAGAAAAAACTTAACCT+TGG - Chr5:13275923-13275942 None:intergenic 25.0%
! TTCCTCAAATTATCTATCAT+TGG - Chr5:13274771-13274790 None:intergenic 25.0%
!! AAAGAAGGTATAGATTAGAA+AGG + Chr5:13273886-13273905 MsG0580025051.01.T01:intron 25.0%
!! ATGTGATTTGGGTAATATTA+AGG - Chr5:13275750-13275769 None:intergenic 25.0%
!!! ACGTGCTGAATTTTTTTATA+GGG + Chr5:13273622-13273641 MsG0580025051.01.T01:intron 25.0%
!!! ATATTAAGGTATTGAAGATC+CGG - Chr5:13275736-13275755 None:intergenic 25.0%
!!! GGGTTAAATAAGGTTTTATA+AGG - Chr5:13273750-13273769 None:intergenic 25.0%
!!! TACGTGCTGAATTTTTTTAT+AGG + Chr5:13273621-13273640 MsG0580025051.01.T01:intron 25.0%
!!! TTGGAATTGGTCATTTTAAT+AGG + Chr5:13275244-13275263 MsG0580025051.01.T01:intron 25.0%
AAAATCGCTCATAATCACTA+AGG - Chr5:13275022-13275041 None:intergenic 30.0%
AAATCGCTCATAATCACTAA+GGG - Chr5:13275021-13275040 None:intergenic 30.0%
ACTAAAGCAAGCAAAAACAA+TGG + Chr5:13274110-13274129 MsG0580025051.01.T01:CDS 30.0%
ATCATCAACATCTTTAGTGA+TGG - Chr5:13275532-13275551 None:intergenic 30.0%
CACCAATGATAGATAATTTG+AGG + Chr5:13274766-13274785 MsG0580025051.01.T01:intron 30.0%
CACGAAAAACTAGTAAGAAA+TGG + Chr5:13273860-13273879 MsG0580025051.01.T01:intron 30.0%
CATTTCAATATGGCTACATA+AGG + Chr5:13275292-13275311 MsG0580025051.01.T01:intron 30.0%
CTTATGTAGCCATATTGAAA+TGG - Chr5:13275294-13275313 None:intergenic 30.0%
! ATCTAGATTTTACGCAAGAT+CGG - Chr5:13275201-13275220 None:intergenic 30.0%
! ATTAGCATAGTTTTCAGACT+CGG - Chr5:13273598-13273617 None:intergenic 30.0%
!! AAGATGTTGATGATCAACAT+TGG + Chr5:13275538-13275557 MsG0580025051.01.T01:CDS 30.0%
!! AGCTTTGCTCTTTTAGTTAA+CGG + Chr5:13274366-13274385 MsG0580025051.01.T01:CDS 30.0%
!! GTTTTTGCTTGCTTTAGTTT+TGG - Chr5:13274108-13274127 None:intergenic 30.0%
!! TATGAGCGATTTTTCGATTA+TGG + Chr5:13275029-13275048 MsG0580025051.01.T01:intron 30.0%
!!! AATCTAGATTTTGACTACCT+TGG + Chr5:13275212-13275231 MsG0580025051.01.T01:intron 30.0%
!!! CTTTAGTTTTGGATCTGTTT+TGG - Chr5:13274097-13274116 None:intergenic 30.0%
!!! GTTGTTACTGGTTTTATTTG+CGG - Chr5:13274075-13274094 None:intergenic 30.0%
ACACTGACACCTTTGATTAA+AGG - Chr5:13274850-13274869 None:intergenic 35.0%
ACATGTTGTAATGTGAGCTA+TGG + Chr5:13275135-13275154 MsG0580025051.01.T01:intron 35.0%
AGGTATAGATTAGAAAGGTG+AGG + Chr5:13273891-13273910 MsG0580025051.01.T01:intron 35.0%
ATCACCATTGAGAATGATGT+TGG + Chr5:13275688-13275707 MsG0580025051.01.T01:CDS 35.0%
CCAAACACACCTTTAATCAA+AGG + Chr5:13274838-13274857 MsG0580025051.01.T01:intron 35.0%
CTGCTCAAATCTAGAAATTC+TGG + Chr5:13275600-13275619 MsG0580025051.01.T01:CDS 35.0%
GCAAAGTTTATCCAAGCTTT+GGG - Chr5:13275641-13275660 None:intergenic 35.0%
GGTATAGATTAGAAAGGTGA+GGG + Chr5:13273892-13273911 MsG0580025051.01.T01:intron 35.0%
GTATTCACGAAACTTATCGT+CGG - Chr5:13274451-13274470 None:intergenic 35.0%
TAAGTTTCGTGAATACTCAG+TGG + Chr5:13274455-13274474 MsG0580025051.01.T01:CDS 35.0%
TCACCATTGAGAATGATGTT+GGG + Chr5:13275689-13275708 MsG0580025051.01.T01:CDS 35.0%
TTACTTGGAAGTAAATGCAC+CGG + Chr5:13275714-13275733 MsG0580025051.01.T01:CDS 35.0%
! ATTTTCAACCTTTTCACGGA+AGG - Chr5:13275670-13275689 None:intergenic 35.0%
! CCTTTGATTAAAGGTGTGTT+TGG - Chr5:13274841-13274860 None:intergenic 35.0%
! GATGATCAACATTGGTTATG+TGG + Chr5:13275546-13275565 MsG0580025051.01.T01:CDS 35.0%
! GCATTTTTCTTTCCTTTCTG+TGG + Chr5:13274668-13274687 MsG0580025051.01.T01:CDS 35.0%
! GGTGATTTTCAACCTTTTCA+CGG - Chr5:13275674-13275693 None:intergenic 35.0%
! TGTAAGTGTTGTGTTGATGT+TGG + Chr5:13274814-13274833 MsG0580025051.01.T01:intron 35.0%
!! TAGAAATGGAGGTTTTGGTA+GGG - Chr5:13274239-13274258 None:intergenic 35.0%
!! TCTTTTAGTTAACGGTGTCT+TGG + Chr5:13274374-13274393 MsG0580025051.01.T01:CDS 35.0%
!!! GATTTTGACTACCTTGGTTA+CGG + Chr5:13275218-13275237 MsG0580025051.01.T01:intron 35.0%
AAACGAAGAAAACCGGTAAC+GGG + Chr5:13274144-13274163 MsG0580025051.01.T01:CDS 40.0%
AACTAACAACCGTAGAGTGT+TGG - Chr5:13275507-13275526 None:intergenic 40.0%
ACACAACAACAACCACAGAA+AGG - Chr5:13274683-13274702 None:intergenic 40.0%
ATACCGACACCTCTGATTAA+AGG - Chr5:13274932-13274951 None:intergenic 40.0%
ATCGTCCAAACGAAGAAAAC+CGG + Chr5:13274137-13274156 MsG0580025051.01.T01:CDS 40.0%
CAAACGAAGAAAACCGGTAA+CGG + Chr5:13274143-13274162 MsG0580025051.01.T01:CDS 40.0%
CACCATTGAGAATGATGTTG+GGG + Chr5:13275690-13275709 MsG0580025051.01.T01:CDS 40.0%
CAGTTAATGCCATTGAGTAC+TGG - Chr5:13273947-13273966 None:intergenic 40.0%
CGCAAAGTTTATCCAAGCTT+TGG - Chr5:13275642-13275661 None:intergenic 40.0%
GCCTGAGTGAAACTAGATTA+GGG - Chr5:13274590-13274609 None:intergenic 40.0%
GGTTAAGTTTCTCTCACAGA+CGG - Chr5:13274024-13274043 None:intergenic 40.0%
TAGATTAGGGCATGAGAAGA+GGG - Chr5:13274577-13274596 None:intergenic 40.0%
TCTGTGAATGCACTTCTTGA+TGG + Chr5:13275577-13275596 MsG0580025051.01.T01:CDS 40.0%
TGAATACTCAGTGGAGACTT+GGG + Chr5:13274464-13274483 MsG0580025051.01.T01:CDS 40.0%
TGCCTGAGTGAAACTAGATT+AGG - Chr5:13274591-13274610 None:intergenic 40.0%
TGTAAGCATCCAACACTCTA+CGG + Chr5:13275495-13275514 MsG0580025051.01.T01:CDS 40.0%
TTGACGTGAAATACCAGACA+CGG + Chr5:13274723-13274742 MsG0580025051.01.T01:intron 40.0%
! ACACCTTTAATCAGAGGTGT+CGG + Chr5:13274926-13274945 MsG0580025051.01.T01:intron 40.0%
! ATTTTGTGGCCAGTACTCAA+TGG + Chr5:13273935-13273954 MsG0580025051.01.T01:intron 40.0%
! TTTTACGCAAGATCGGTAAG+CGG - Chr5:13275194-13275213 None:intergenic 40.0%
! TTTTCTTCTTCACCCGTTAC+CGG - Chr5:13274159-13274178 None:intergenic 40.0%
!! CGATTTTTCGATTATGGTCG+TGG + Chr5:13275035-13275054 MsG0580025051.01.T01:intron 40.0%
!! GTAGAAATGGAGGTTTTGGT+AGG - Chr5:13274240-13274259 None:intergenic 40.0%
!! TAGTTTTCAGGGAAGCTAGT+CGG - Chr5:13274045-13274064 None:intergenic 40.0%
!! TTTTTCGATTATGGTCGTGG+TGG + Chr5:13275038-13275057 MsG0580025051.01.T01:intron 40.0%
!!! ACTCTGCTCTACTGATTTTG+TGG + Chr5:13273921-13273940 MsG0580025051.01.T01:intron 40.0%
!!! GGATCTGTTTTGGTTGTTAC+TGG - Chr5:13274087-13274106 None:intergenic 40.0%
AACCTTCGCCGAATGTGATT+TGG - Chr5:13275762-13275781 None:intergenic 45.0%
AAGATACGCTTCCACCACAT+TGG - Chr5:13275803-13275822 None:intergenic 45.0%
AAGCTCGAGTTCATGAAGGT+GGG - Chr5:13274508-13274527 None:intergenic 45.0%
AATTCCAACCACCGTAACCA+AGG - Chr5:13275232-13275251 None:intergenic 45.0%
ACCTTCGCCGAATGTGATTT+GGG - Chr5:13275761-13275780 None:intergenic 45.0%
ACGAAACTTATCGTCGGAGA+AGG - Chr5:13274445-13274464 None:intergenic 45.0%
ACGATGGAACCAAGTGATGT+GGG - Chr5:13275835-13275854 None:intergenic 45.0%
ACTTATCGTCGGAGAAGGAA+TGG - Chr5:13274440-13274459 None:intergenic 45.0%
AGAATCAGCTACTTACCCGA+CGG + Chr5:13274186-13274205 MsG0580025051.01.T01:CDS 45.0%
AGATACGCTTCCACCACATT+GGG - Chr5:13275802-13275821 None:intergenic 45.0%
AGCCCCAACATCATTCTCAA+TGG - Chr5:13275695-13275714 None:intergenic 45.0%
ATGTGGTTCAAAACACCGTC+GGG - Chr5:13274204-13274223 None:intergenic 45.0%
CACATATTCGTGGGAGTCAT+CGG - Chr5:13274322-13274341 None:intergenic 45.0%
CCAGACACACCTTTAATCAG+AGG + Chr5:13274920-13274939 MsG0580025051.01.T01:intron 45.0%
CTAGATTAGGGCATGAGAAG+AGG - Chr5:13274578-13274597 None:intergenic 45.0%
CTTGTACAACTTGCCCAATG+TGG + Chr5:13275786-13275805 MsG0580025051.01.T01:CDS 45.0%
GAATGATGTTGGGGCTTACT+TGG + Chr5:13275699-13275718 MsG0580025051.01.T01:CDS 45.0%
GAGTAAGCTCGAGTTCATGA+AGG - Chr5:13274512-13274531 None:intergenic 45.0%
GATGCTTACATGAACTGCAC+CGG - Chr5:13275485-13275504 None:intergenic 45.0%
GATGTGGTTCAAAACACCGT+CGG - Chr5:13274205-13274224 None:intergenic 45.0%
GATGTGTTTCCCACATCACT+TGG + Chr5:13275823-13275842 MsG0580025051.01.T01:CDS 45.0%
GTCATCGGAGAAGTGAAGAA+CGG - Chr5:13274307-13274326 None:intergenic 45.0%
GTGAATACTCAGTGGAGACT+TGG + Chr5:13274463-13274482 MsG0580025051.01.T01:CDS 45.0%
GTTGAGTCGTTCAACAACCA+AGG + Chr5:13275903-13275922 MsG0580025051.01.T01:CDS 45.0%
TAAGCTCGAGTTCATGAAGG+TGG - Chr5:13274509-13274528 None:intergenic 45.0%
TGACGTGAAATACCAGACAC+GGG + Chr5:13274724-13274743 MsG0580025051.01.T01:intron 45.0%
TTCTCTCACAGACGGAAAGA+AGG - Chr5:13274016-13274035 None:intergenic 45.0%
TTGGTTACGGTGGTTGGAAT+TGG + Chr5:13275231-13275250 MsG0580025051.01.T01:intron 45.0%
TTTGACTACCTTGGTTACGG+TGG + Chr5:13275221-13275240 MsG0580025051.01.T01:intron 45.0%
! ACTCTCTTTTCTGACGAGGA+TGG + Chr5:13274528-13274547 MsG0580025051.01.T01:CDS 45.0%
! CATAGTTTTCAGACTCGGCT+CGG - Chr5:13273593-13273612 None:intergenic 45.0%
! CCTCTGATTAAAGGTGTGTC+TGG - Chr5:13274923-13274942 None:intergenic 45.0%
! GCCCTAATCTAGTTTCACTC+AGG + Chr5:13274586-13274605 MsG0580025051.01.T01:CDS 45.0%
! GCTTACTCTCTTTTCTGACG+AGG + Chr5:13274524-13274543 MsG0580025051.01.T01:CDS 45.0%
! GGAACTGCTGAATGCAGTTT+TGG + Chr5:13275062-13275081 MsG0580025051.01.T01:intron 45.0%
! TGGTTGGTCCACATATTCGT+GGG - Chr5:13274331-13274350 None:intergenic 45.0%
! TGTGAGTGTTGTGTCGATGA+TGG + Chr5:13274896-13274915 MsG0580025051.01.T01:intron 45.0%
! TTCAACCTTTTCACGGAAGG+CGG - Chr5:13275667-13275686 None:intergenic 45.0%
! TTTTGGTAGGGAGCAATGAG+AGG - Chr5:13274227-13274246 None:intergenic 45.0%
!! TTGCTTTTCAGCCCAAAGCT+TGG + Chr5:13275627-13275646 MsG0580025051.01.T01:CDS 45.0%
!!! CGTTACCGGTTTTCTTCGTT+TGG - Chr5:13274145-13274164 None:intergenic 45.0%
!!! GCGGAAGCTACTAGTTTTCA+GGG - Chr5:13274056-13274075 None:intergenic 45.0%
!!! TGCGGAAGCTACTAGTTTTC+AGG - Chr5:13274057-13274076 None:intergenic 45.0%
AACCTCTTTGGCGCTCTCTA+TGG + Chr5:13275865-13275884 MsG0580025051.01.T01:CDS 50.0%
AAGCTCTTGAAACGTTCCGC+TGG - Chr5:13274351-13274370 None:intergenic 50.0%
ACCCAAATCACATTCGGCGA+AGG + Chr5:13275757-13275776 MsG0580025051.01.T01:CDS 50.0%
ACCTCTTTGGCGCTCTCTAT+GGG + Chr5:13275866-13275885 MsG0580025051.01.T01:CDS 50.0%
ACTACCTTGGTTACGGTGGT+TGG + Chr5:13275225-13275244 MsG0580025051.01.T01:intron 50.0%
ACTCATCTTCCGAATAGCGC+GGG - Chr5:13274415-13274434 None:intergenic 50.0%
AGCTCGAGTTCATGAAGGTG+GGG - Chr5:13274507-13274526 None:intergenic 50.0%
CGAATATGTGGACCAACCAG+CGG + Chr5:13274332-13274351 MsG0580025051.01.T01:CDS 50.0%
CGATGACTCCCACGAATATG+TGG + Chr5:13274320-13274339 MsG0580025051.01.T01:CDS 50.0%
CGCCAAAGAGGTTGTGCAAA+GGG - Chr5:13275858-13275877 None:intergenic 50.0%
GACGATGGAACCAAGTGATG+TGG - Chr5:13275836-13275855 None:intergenic 50.0%
GACTCATCTTCCGAATAGCG+CGG - Chr5:13274416-13274435 None:intergenic 50.0%
GGTTTGCGGTAGCTTGAAGT+CGG - Chr5:13274556-13274575 None:intergenic 50.0%
GTACAACTTGCCCAATGTGG+TGG + Chr5:13275789-13275808 MsG0580025051.01.T01:CDS 50.0%
GTCCCTTTGCACAACCTCTT+TGG + Chr5:13275853-13275872 MsG0580025051.01.T01:CDS 50.0%
GTTTGCGGTAGCTTGAAGTC+GGG - Chr5:13274555-13274574 None:intergenic 50.0%
TAGGGAGCAATGAGAGGATG+TGG - Chr5:13274221-13274240 None:intergenic 50.0%
TCTTGAAACGTTCCGCTGGT+TGG - Chr5:13274347-13274366 None:intergenic 50.0%
TGTTTGTACGCCAGTCTCTC+CGG + Chr5:13275463-13275482 MsG0580025051.01.T01:intron 50.0%
TTCGATTATGGTCGTGGTGG+TGG + Chr5:13275041-13275060 MsG0580025051.01.T01:intron 50.0%
! CTGGTTGGTCCACATATTCG+TGG - Chr5:13274332-13274351 None:intergenic 50.0%
! GGCGGTAGAAATGGAGGTTT+TGG - Chr5:13274244-13274263 None:intergenic 50.0%
! TCAACCTTTTCACGGAAGGC+GGG - Chr5:13275666-13275685 None:intergenic 50.0%
AGAAAGGCGGGCGGTAGAAA+TGG - Chr5:13274253-13274272 None:intergenic 55.0%
ATGAACTGCACCGGAGAGAC+TGG - Chr5:13275476-13275495 None:intergenic 55.0%
CGTAACTTGAGTCCCGTGTC+TGG - Chr5:13274739-13274758 None:intergenic 55.0%
CTCATCTTCCGAATAGCGCG+GGG - Chr5:13274414-13274433 None:intergenic 55.0%
GAGGTTGTGCAAAGGGACGA+TGG - Chr5:13275851-13275870 None:intergenic 55.0%
GCGCCAAAGAGGTTGTGCAA+AGG - Chr5:13275859-13275878 None:intergenic 55.0%
GGGCATGAGAAGAGGGTTTG+CGG - Chr5:13274570-13274589 None:intergenic 55.0%
TCCGAATAGCGCGGGGATTA+CGG - Chr5:13274407-13274426 None:intergenic 55.0%
TCCGTAATCCCCGCGCTATT+CGG + Chr5:13274403-13274422 MsG0580025051.01.T01:CDS 55.0%
! ACTTGGGTTCGTGCTGCTGT+TGG + Chr5:13274480-13274499 MsG0580025051.01.T01:CDS 55.0%
!! TCCCATAGAGAGCGCCAAAG+AGG - Chr5:13275870-13275889 None:intergenic 55.0%
!!! TTTTCAGACTCGGCTCGGAC+CGG - Chr5:13273588-13273607 None:intergenic 55.0%
AAGGCGGGCGGTAGAAATGG+AGG - Chr5:13274250-13274269 None:intergenic 60.0%
GAACGGAGAGATCCTGCCAG+AGG - Chr5:13274290-13274309 None:intergenic 60.0%
GAATAGCGCGGGGATTACGG+AGG - Chr5:13274404-13274423 None:intergenic 60.0%
CCGTGAACCGGTGGGTAAGC+CGG - Chr5:13273547-13273566 None:intergenic 65.0%
GCGTCCCGCCTTCCGTGAAA+AGG + Chr5:13275659-13275678 MsG0580025051.01.T01:CDS 65.0%
! ACGCCACCGGCTAGAAAGGC+GGG - Chr5:13274265-13274284 None:intergenic 65.0%
! CTACCGCCCGCCTTTCTAGC+CGG + Chr5:13274256-13274275 MsG0580025051.01.T01:CDS 65.0%
! GACGCCACCGGCTAGAAAGG+CGG - Chr5:13274266-13274285 None:intergenic 65.0%
! GCTCGAACCGGCTTACCCAC+CGG + Chr5:13273537-13273556 MsG0580025051.01.T01:CDS 65.0%
! GGTGACGCCACCGGCTAGAA+AGG - Chr5:13274269-13274288 None:intergenic 65.0%
!! CCGGCTTACCCACCGGTTCA+CGG + Chr5:13273544-13273563 MsG0580025051.01.T01:CDS 65.0%
CCTGCCAGAGGTGACGCCAC+CGG - Chr5:13274278-13274297 None:intergenic 70.0%
CGGTCGGACCGTGAACCGGT+GGG - Chr5:13273555-13273574 None:intergenic 70.0%
CTAGCCGGTGGCGTCACCTC+TGG + Chr5:13274271-13274290 MsG0580025051.01.T01:CDS 70.0%
GGACCGGTCGGACCGTGAAC+CGG - Chr5:13273559-13273578 None:intergenic 70.0%
! CCACCGGCTAGAAAGGCGGG+CGG - Chr5:13274262-13274281 None:intergenic 70.0%
!! CCACCGGTTCACGGTCCGAC+CGG + Chr5:13273553-13273572 MsG0580025051.01.T01:CDS 70.0%
CACGGTCCGACCGGTCCGAC+CGG + Chr5:13273562-13273581 MsG0580025051.01.T01:CDS 75.0%
CCGGTCGGACCGTGAACCGG+TGG - Chr5:13273556-13273575 None:intergenic 75.0%
CCGGTGGCGTCACCTCTGGC+AGG + Chr5:13274275-13274294 MsG0580025051.01.T01:CDS 75.0%
! CCGCCCGCCTTTCTAGCCGG+TGG + Chr5:13274259-13274278 MsG0580025051.01.T01:CDS 75.0%
!! CAGACTCGGCTCGGACCGGC+CGG - Chr5:13273584-13273603 None:intergenic 75.0%
! CTCGGACCGGCCGGTCGGAC+CGG - Chr5:13273575-13273594 None:intergenic 80.0%
! GACCGGCCGGTCGGACCGGT+CGG - Chr5:13273571-13273590 None:intergenic 80.0%
! GTCCGACCGGTCCGACCGGC+CGG + Chr5:13273566-13273585 MsG0580025051.01.T01:CDS 80.0%
!!! CTCGGCTCGGACCGGCCGGT+CGG - Chr5:13273580-13273599 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 13273531 13275942 13273531 ID=MsG0580025051.01;Name=MsG0580025051.01
Chr5 mRNA 13273531 13275942 13273531 ID=MsG0580025051.01.T01;Parent=MsG0580025051.01;Name=MsG0580025051.01.T01;_AED=0.28;_eAED=0.28;_QI=0|0|0|0.66|0|0|3|0|405
Chr5 exon 13273531 13273623 13273531 ID=MsG0580025051.01.T01:exon:5539;Parent=MsG0580025051.01.T01
Chr5 exon 13274069 13274727 13274069 ID=MsG0580025051.01.T01:exon:5540;Parent=MsG0580025051.01.T01
Chr5 exon 13275477 13275942 13275477 ID=MsG0580025051.01.T01:exon:5541;Parent=MsG0580025051.01.T01
Chr5 CDS 13273531 13273623 13273531 ID=MsG0580025051.01.T01:cds;Parent=MsG0580025051.01.T01
Chr5 CDS 13274069 13274727 13274069 ID=MsG0580025051.01.T01:cds;Parent=MsG0580025051.01.T01
Chr5 CDS 13275477 13275942 13275477 ID=MsG0580025051.01.T01:cds;Parent=MsG0580025051.01.T01
Gene Sequence

>MsG0580025051.01.T01

ATGTTGGCTCGAACCGGCTTACCCACCGGTTCACGGTCCGACCGGTCCGACCGGCCGGTCCGAGCCGAGTCTGAAAACTATGCTAATAACTACCTTCCGCAAATAAAACCAGTAACAACCAAAACAGATCCAAAACTAAAGCAAGCAAAAACAATGGTGATATCGTCCAAACGAAGAAAACCGGTAACGGGTGAAGAAGAAAACGAAGACAGAATCAGCTACTTACCCGACGGTGTTTTGAACCACATCCTCTCATTGCTCCCTACCAAAACCTCCATTTCTACCGCCCGCCTTTCTAGCCGGTGGCGTCACCTCTGGCAGGATCTCTCCGTTCTTCACTTCTCCGATGACTCCCACGAATATGTGGACCAACCAGCGGAACGTTTCAAGAGCTTTGCTCTTTTAGTTAACGGTGTCTTGGCTCTCCTCCGTAATCCCCGCGCTATTCGGAAGATGAGTCTCCATTCCTTCTCCGACGATAAGTTTCGTGAATACTCAGTGGAGACTTGGGTTCGTGCTGCTGTTGGACCCCACCTTCATGAACTCGAGCTTACTCTCTTTTCTGACGAGGATGGTCCCGACTTCAAGCTACCGCAAACCCTCTTCTCATGCCCTAATCTAGTTTCACTCAGGCATGCATGCACTCACGCTCACGCACTTTCATTTTATATATACTACATTTTGATTTTAAAGCATTTTTCTTTCCTTTCTGTGGTTGTTGTTGTGTCCTTCAGTATTTGTTTAAGTTTGACTCTCTCCGGTGCAGTTCATGTAAGCATCCAACACTCTACGGTTGTTAGTTTACCATCACTAAAGATGTTGATGATCAACATTGGTTATGTGGAAGTGTCTTCTGTGAATGCACTTCTTGATGGCTGCTCAAATCTAGAAATTCTGGATCTTTGCTTTTCAGCCCAAAGCTTGGATAAACTTTGCGTCCCGCCTTCCGTGAAAAGGTTGAAAATCACCATTGAGAATGATGTTGGGGCTTACTTGGAAGTAAATGCACCGGATCTTCAATACCTTAATATTACCCAAATCACATTCGGCGAAGGTTTCAGCTTGTACAACTTGCCCAATGTGGTGGAAGCGTATCTTGATGTGTTTCCCACATCACTTGGTTCCATCGTCCCTTTGCACAACCTCTTTGGCGCTCTCTATGGGACAAAACATCTCATGTTGAGTCGTTCAACAACCAAGGTTAAGTTTTTTCTTTAG
Protein sequence

>MsG0580025051.01.T01

MLARTGLPTGSRSDRSDRPVRAESENYANNYLPQIKPVTTKTDPKLKQAKTMVISSKRRKPVTGEEENEDRISYLPDGVLNHILSLLPTKTSISTARLSSRWRHLWQDLSVLHFSDDSHEYVDQPAERFKSFALLVNGVLALLRNPRAIRKMSLHSFSDDKFREYSVETWVRAAVGPHLHELELTLFSDEDGPDFKLPQTLFSCPNLVSLRHACTHAHALSFYIYYILILKHFSFLSVVVVVSFSICLSLTLSGAVHVSIQHSTVVSLPSLKMLMINIGYVEVSSVNALLDGCSNLEILDLCFSAQSLDKLCVPPSVKRLKITIENDVGAYLEVNAPDLQYLNITQITFGEGFSLYNLPNVVEAYLDVFPTSLGSIVPLHNLFGALYGTKHLMLSRSTTKVKFFL*