AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042360.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042360.01.T01 MTR_8g014260 58.099 463 166 12 1 447 1 451 7.76e-159 457
MsG0880042360.01.T01 MTR_4g024710 68.385 291 89 2 158 447 59 347 2.05e-135 393
MsG0880042360.01.T01 MTR_8g445780 51.733 404 169 8 6 401 5 390 1.00e-115 345
MsG0880042360.01.T01 MTR_4g024745 65.441 272 91 2 160 430 15 284 3.06e-113 334
MsG0880042360.01.T01 MTR_8g014210 61.638 232 88 1 216 447 1 231 3.03e-90 274
MsG0880042360.01.T01 MTR_2g083840 42.457 464 227 19 7 447 11 457 6.71e-85 268
MsG0880042360.01.T01 MTR_8g467800 40.685 467 233 18 7 447 5 453 4.37e-80 255
MsG0880042360.01.T01 MTR_8g062270 39.700 466 220 16 14 446 16 453 2.68e-76 245
MsG0880042360.01.T01 MTR_8g014160 38.581 451 202 12 10 447 37 425 2.47e-73 237
MsG0880042360.01.T01 MTR_8g058970 40.000 490 238 19 1 447 1 477 3.82e-73 238
MsG0880042360.01.T01 MTR_5g092960 39.530 468 247 15 2 446 7 461 5.51e-72 234
MsG0880042360.01.T01 MTR_8g468810 39.040 479 244 19 1 447 1 463 6.49e-72 234
MsG0880042360.01.T01 MTR_8g468840 38.266 473 236 17 1 444 2 447 9.69e-67 220
MsG0880042360.01.T01 MTR_8g468760 36.478 477 213 15 1 446 1 418 1.28e-62 209
MsG0880042360.01.T01 MTR_4g032730 36.515 482 251 18 2 446 3 466 1.85e-61 207
MsG0880042360.01.T01 MTR_8g077460 67.586 145 47 0 303 447 231 375 2.56e-58 196
MsG0880042360.01.T01 MTR_8g062010 35.449 457 249 17 8 447 3 430 4.48e-56 192
MsG0880042360.01.T01 MTR_8g070950 35.622 466 249 21 1 447 1 434 1.46e-54 188
MsG0880042360.01.T01 MTR_8g058965 37.118 458 250 18 14 447 13 456 8.47e-52 181
MsG0880042360.01.T01 MTR_8g469020 35.421 463 252 18 14 447 7 451 1.66e-51 180
MsG0880042360.01.T01 MTR_8g062310 35.570 447 232 22 14 447 25 428 7.55e-49 172
MsG0880042360.01.T01 MTR_8g062080 32.075 477 252 19 5 447 7 445 9.99e-48 170
MsG0880042360.01.T01 MTR_8g468810 37.209 387 194 17 1 357 1 368 7.17e-45 160
MsG0880042360.01.T01 MTR_8g467800 39.375 320 162 14 7 309 5 309 1.17e-41 151
MsG0880042360.01.T01 MTR_5g092960 38.649 370 199 12 2 354 7 365 3.58e-41 151
MsG0880042360.01.T01 MTR_8g062300 30.372 484 279 17 2 447 14 477 1.06e-38 146
MsG0880042360.01.T01 MTR_4g050250 33.102 432 232 20 3 393 4 419 2.18e-38 144
MsG0880042360.01.T01 MTR_8g468810 35.159 347 179 14 1 323 1 325 3.56e-37 139
MsG0880042360.01.T01 MTR_8g468810 35.435 333 173 13 1 309 1 315 1.70e-36 137
MsG0880042360.01.T01 MTR_8g468810 35.435 333 173 13 1 309 1 315 2.49e-36 137
MsG0880042360.01.T01 MTR_8g014230 64.773 88 30 1 360 447 18 104 1.23e-32 119
MsG0880042360.01.T01 MTR_2g086020 47.887 142 70 4 309 447 175 315 1.49e-25 106
MsG0880042360.01.T01 MTR_5g084070 29.345 443 260 16 14 439 13 419 3.49e-23 101
MsG0880042360.01.T01 MTR_8g467790 29.870 385 219 15 14 389 148 490 4.72e-23 102
MsG0880042360.01.T01 MTR_5g021550 58.947 95 30 3 5 93 4 95 5.92e-22 92.4
MsG0880042360.01.T01 MTR_5g080710 28.194 454 272 20 7 439 26 446 5.05e-21 95.5
MsG0880042360.01.T01 MTR_1g041245 28.326 466 230 21 5 447 2 386 1.05e-20 94.0
MsG0880042360.01.T01 MTR_4g024720 57.732 97 32 4 1 92 1 93 1.85e-20 89.7
MsG0880042360.01.T01 MTR_4g080787 27.195 467 286 15 13 446 18 463 3.34e-20 93.2
MsG0880042360.01.T01 MTR_8g014290 52.174 92 39 2 6 93 2 92 2.33e-19 85.1
MsG0880042360.01.T01 MTR_4g024770 69.355 62 15 2 1 59 8 68 6.95e-19 81.3
MsG0880042360.01.T01 MTR_3g108560 27.376 442 243 18 12 446 18 388 2.04e-18 87.0
MsG0880042360.01.T01 MTR_8g014180 67.797 59 15 2 1 56 1 58 5.00e-16 72.8
MsG0880042360.01.T01 MTR_7g098510 27.986 293 159 11 169 447 137 391 4.70e-12 67.8
MsG0880042360.01.T01 MTR_3g107160 29.717 212 130 8 6 211 2 200 4.54e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042360.01.T01 AT4G26340 29.478 441 281 11 14 447 2 419 1.63e-38 144
MsG0880042360.01.T01 AT3G49030 29.978 457 275 19 6 446 13 440 1.89e-28 117
MsG0880042360.01.T01 AT2G04230 27.349 479 280 18 3 447 2 446 2.14e-26 111
MsG0880042360.01.T01 AT3G50710 28.825 451 279 16 14 447 2 427 2.45e-25 107
MsG0880042360.01.T01 AT3G49030 29.075 454 257 20 6 446 13 414 9.45e-25 106
MsG0880042360.01.T01 AT3G52680 29.350 477 268 21 1 446 6 444 2.59e-24 105
MsG0880042360.01.T01 AT4G00160 28.361 476 276 21 1 446 1 441 6.63e-23 101
MsG0880042360.01.T01 AT5G56420 27.115 461 271 18 11 447 3 422 3.02e-22 99.0
MsG0880042360.01.T01 AT5G56420 27.115 461 271 18 11 447 3 422 3.02e-22 99.0
MsG0880042360.01.T01 AT5G56420 27.115 461 271 18 11 447 3 422 3.02e-22 99.0
MsG0880042360.01.T01 AT1G32375 26.829 451 283 14 14 447 2 422 4.15e-22 98.6
MsG0880042360.01.T01 AT1G32375 26.829 451 283 14 14 447 2 422 4.15e-22 98.6
MsG0880042360.01.T01 AT5G56820 27.571 457 263 17 11 444 12 423 6.17e-20 92.0
MsG0880042360.01.T01 AT4G13965 28.889 450 262 20 14 444 10 420 7.23e-20 92.0
MsG0880042360.01.T01 AT3G49020 28.043 460 275 17 11 447 19 445 7.57e-20 92.0
MsG0880042360.01.T01 AT3G26930 26.316 456 287 15 11 447 18 443 3.24e-19 90.1
MsG0880042360.01.T01 AT5G56440 27.155 464 271 18 14 446 2 429 3.39e-19 89.7
MsG0880042360.01.T01 AT5G44950 27.533 454 279 18 13 440 3 432 7.56e-19 89.0
MsG0880042360.01.T01 AT5G38570 25.057 435 263 11 14 446 2 375 2.15e-18 87.0
MsG0880042360.01.T01 AT5G38590 26.683 416 262 16 14 417 2 386 3.00e-18 87.0
MsG0880042360.01.T01 AT2G26860 27.166 427 262 13 14 419 2 400 3.15e-18 86.7
MsG0880042360.01.T01 AT2G26860 27.166 427 262 13 14 419 2 400 3.15e-18 86.7
MsG0880042360.01.T01 AT1G51370 27.171 449 274 17 12 442 17 430 1.20e-17 85.1
MsG0880042360.01.T01 AT4G26350 27.195 467 267 20 14 447 2 428 1.48e-17 85.1
MsG0880042360.01.T01 AT5G60610 27.294 425 248 17 14 416 2 387 3.32e-17 83.6
MsG0880042360.01.T01 AT5G60610 27.294 425 248 17 14 416 2 387 3.32e-17 83.6
MsG0880042360.01.T01 AT5G56800 29.682 283 170 13 176 446 78 343 5.20e-17 82.4
MsG0880042360.01.T01 AT5G56400 25.793 473 280 23 5 447 24 455 5.51e-17 83.2
MsG0880042360.01.T01 AT1G69630 27.140 479 273 17 1 439 1 443 8.68e-17 82.8
MsG0880042360.01.T01 AT3G58920 27.926 487 272 22 14 444 2 465 2.04e-16 81.6
MsG0880042360.01.T01 AT5G56390 25.386 453 288 13 14 446 2 424 2.91e-16 80.9
MsG0880042360.01.T01 AT5G62970 25.855 468 291 17 14 446 2 448 2.11e-15 78.6
MsG0880042360.01.T01 AT1G80470 24.406 463 304 19 1 445 1 435 2.13e-15 78.6
MsG0880042360.01.T01 AT5G35995 24.689 482 284 16 13 446 4 454 2.42e-15 78.2
MsG0880042360.01.T01 AT5G35995 24.689 482 284 16 13 446 4 454 2.42e-15 78.2
MsG0880042360.01.T01 AT5G56560 25.446 448 282 18 16 447 7 418 2.44e-15 78.2
MsG0880042360.01.T01 AT3G26922 29.630 297 182 11 13 304 13 287 1.05e-14 75.1
MsG0880042360.01.T01 AT3G26922 29.630 297 182 11 13 304 13 287 1.05e-14 75.1
MsG0880042360.01.T01 AT3G26920 28.070 285 184 11 172 446 66 339 1.22e-14 75.5
MsG0880042360.01.T01 AT3G26920 28.070 285 184 11 172 446 66 339 1.22e-14 75.5
MsG0880042360.01.T01 AT3G52680 29.600 375 207 17 1 356 6 342 1.36e-14 75.5
MsG0880042360.01.T01 AT5G56560 26.460 291 182 10 171 447 335 607 1.63e-14 76.3
MsG0880042360.01.T01 AT3G59200 30.824 279 158 9 14 277 7 265 2.95e-14 74.3
MsG0880042360.01.T01 AT3G59200 30.824 279 158 9 14 277 7 265 4.40e-14 74.7
MsG0880042360.01.T01 AT3G49480 25.056 443 296 12 13 438 11 434 8.91e-14 73.6
MsG0880042360.01.T01 AT1G66310 25.902 471 277 17 6 445 11 440 1.13e-13 73.2
MsG0880042360.01.T01 AT5G50270 24.222 450 264 15 14 429 2 408 1.92e-13 72.4
MsG0880042360.01.T01 AT1G51055 34.091 132 72 4 325 447 36 161 3.36e-13 67.8
MsG0880042360.01.T01 AT5G56690 25.416 421 268 18 16 415 4 399 3.45e-13 71.2
MsG0880042360.01.T01 AT5G56810 27.948 458 262 19 14 444 15 431 3.62e-13 71.6
MsG0880042360.01.T01 AT4G14103 28.674 279 168 11 11 277 5 264 4.20e-13 70.9
MsG0880042360.01.T01 AT4G14103 28.674 279 168 11 11 277 5 264 4.20e-13 70.9
MsG0880042360.01.T01 AT1G58310 30.796 289 161 11 14 277 8 282 7.66e-13 70.9
MsG0880042360.01.T01 AT4G14103 29.242 277 163 12 14 277 8 264 8.39e-13 70.5
MsG0880042360.01.T01 AT5G56380 25.887 479 269 19 14 447 2 439 2.64e-12 68.9
MsG0880042360.01.T01 AT5G56380 25.887 479 269 19 14 447 2 439 2.64e-12 68.9
MsG0880042360.01.T01 AT5G18770 24.307 469 286 18 13 444 23 459 6.01e-12 67.8
MsG0880042360.01.T01 AT5G56570 25.000 284 182 11 174 447 177 439 2.11e-11 66.2
MsG0880042360.01.T01 AT5G56370 25.540 278 172 7 186 446 161 420 3.23e-11 65.5
MsG0880042360.01.T01 AT5G56370 25.540 278 172 7 186 446 161 420 3.23e-11 65.5
MsG0880042360.01.T01 AT3G59230 28.133 391 227 18 5 357 2 376 7.58e-11 64.3
MsG0880042360.01.T01 AT3G59240 27.198 364 223 14 13 354 7 350 9.10e-11 64.3

Find 97 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACCTTTATTCAATTTAA+AGG 0.140904 8:+7564952 MsG0880042360.01.T01:CDS
ACTCAGAAGCTTCGCTGTTT+TGG 0.280021 8:+7563469 MsG0880042360.01.T01:CDS
GCATCAGAATTTCTATGTTT+TGG 0.281244 8:-7564057 None:intergenic
TAATTGTTGTAGAGCTTTGT+AGG 0.290039 8:-7563955 None:intergenic
AGGTGGGTTCGTGCCGTCAT+TGG 0.318155 8:+7563598 MsG0880042360.01.T01:CDS
AAAACCTTTAAATTGAATAA+AGG 0.336412 8:-7564956 None:intergenic
AGGTGCGATATGAGACAATT+AGG 0.354804 8:-7564931 None:intergenic
CATCTAGGAGCTTGAGTAAT+GGG 0.366341 8:-7564318 None:intergenic
TTCCGAATGGCGGAGGATTA+CGG 0.368720 8:-7563514 None:intergenic
CAAAACTTAACCTTAGTTGT+TGG 0.373804 8:-7564376 None:intergenic
CATCTCTATCCCATGTCGTT+TGG 0.377720 8:+7564286 MsG0880042360.01.T01:CDS
TGTGGAGCCCATCCTAAAAT+TGG 0.389214 8:-7564898 None:intergenic
GCTGGTGGAAACCACGGTTT+TGG 0.389987 8:-7563345 None:intergenic
AGATTTCAAGCAAATCATAT+TGG 0.392823 8:-7563811 None:intergenic
ATTTAGAGCTCATGCTGACC+TGG 0.395215 8:+7564608 MsG0880042360.01.T01:CDS
CTCGCCGGTGGCGACACCTT+TGG 0.406449 8:+7563375 MsG0880042360.01.T01:CDS
GATTATTTCTGATATTTCCT+TGG 0.407803 8:+7565047 MsG0880042360.01.T01:CDS
GGTGGGTTCGTGCCGTCATT+GGG 0.409775 8:+7563599 MsG0880042360.01.T01:CDS
CTCCGTAATCCTCCGCCATT+CGG 0.409927 8:+7563512 MsG0880042360.01.T01:CDS
AACATCATGGAATGGGCATT+GGG 0.425635 8:-7564221 None:intergenic
GAATGTCGTACTTCTCCCTT+TGG 0.427201 8:-7565071 None:intergenic
TGTTTGTTCCTCAGTATCCA+TGG 0.429945 8:+7563917 MsG0880042360.01.T01:intron
AAACATCATGGAATGGGCAT+TGG 0.430298 8:-7564222 None:intergenic
CACGTGCTGATTCAGTTAAC+AGG 0.435593 8:+7563578 MsG0880042360.01.T01:CDS
TCAAATGTGTCAAGGGCCTC+TGG 0.439865 8:+7565105 MsG0880042360.01.T01:CDS
TGATATTTCCTTGGACCAAA+GGG 0.451414 8:+7565056 MsG0880042360.01.T01:CDS
ATGGGCATTGGGTAATGTTA+AGG 0.460508 8:-7564210 None:intergenic
AAGCTCCTAGATGCTCTGTC+CGG 0.462781 8:+7564328 MsG0880042360.01.T01:CDS
TTTGAGTAGTCCAACAACTA+AGG 0.473906 8:+7564366 MsG0880042360.01.T01:CDS
TCAACAAATGACATCTCATC+TGG 0.477145 8:-7564988 None:intergenic
ATGGCGGAGGATTACGGAGG+AGG 0.481163 8:-7563508 None:intergenic
CTTTAAATTGAATAAAGGTC+AGG 0.486856 8:-7564951 None:intergenic
CTGATATTTCCTTGGACCAA+AGG 0.487521 8:+7565055 MsG0880042360.01.T01:CDS
TGTTTAAAACATCATGGAAT+GGG 0.490438 8:-7564228 None:intergenic
TCTGCGTGTTTAAAACATCA+TGG 0.491336 8:-7564234 None:intergenic
ACATCCCACCTACCTTGAAA+AGG 0.492710 8:+7564119 MsG0880042360.01.T01:CDS
TCGGGAGGCGTGAGAGGATG+TGG 0.496398 8:-7563322 None:intergenic
GAGGATTACGGAGGAGGGAA+AGG 0.500530 8:-7563502 None:intergenic
TTGTCCCGGACAGAGCATCT+AGG 0.503175 8:-7564333 None:intergenic
AAGGTGAAGTTCCTCGAGAT+GGG 0.505432 8:-7563623 None:intergenic
GACAACGGAGTGAGCACAGA+TGG 0.507096 8:-7563545 None:intergenic
AAGATTCTGTTAATTGACAT+TGG 0.510535 8:+7563992 MsG0880042360.01.T01:CDS
ACACCTTTGGCAGAATCTCC+AGG 0.512480 8:+7563388 MsG0880042360.01.T01:CDS
CAAGGTGAAGTTCCTCGAGA+TGG 0.515326 8:-7563624 None:intergenic
GTACTTCTCCCTTTGGTCCA+AGG 0.515790 8:-7565064 None:intergenic
TGGTTGAGCAGCACATTGTC+TGG 0.516849 8:-7563302 None:intergenic
AGCTCCTAGATGCTCTGTCC+GGG 0.517194 8:+7564329 MsG0880042360.01.T01:CDS
CATCTCAGTCAAATGTAAGT+TGG 0.521303 8:-7565134 None:intergenic
CCACCAGCTGTCTATCTCGC+CGG 0.523462 8:+7563360 MsG0880042360.01.T01:CDS
CCCACCTACCTTGAAAAGGC+TGG 0.525727 8:+7564123 MsG0880042360.01.T01:CDS
CTCGAGATGGGGCCCAATGA+CGG 0.527848 8:-7563611 None:intergenic
TGTTGTCTGAACGGAGATCA+AGG 0.529944 8:-7563642 None:intergenic
TTTGCTGACAATGACAGTGG+TGG 0.530795 8:+7564151 MsG0880042360.01.T01:CDS
TTGCTGACAATGACAGTGGT+GGG 0.531811 8:+7564152 MsG0880042360.01.T01:CDS
GTGTTTAAAACATCATGGAA+TGG 0.533456 8:-7564229 None:intergenic
CATCATCGAAATCTAGCACC+TGG 0.535113 8:-7563406 None:intergenic
GTTTGTTCCTCAGTATCCAT+GGG 0.538734 8:+7563918 MsG0880042360.01.T01:intron
AAAATTATCAAATGTGTCAA+GGG 0.548170 8:+7565098 MsG0880042360.01.T01:CDS
ATGCATCTTCCGAATGGCGG+AGG 0.552748 8:-7563521 None:intergenic
TCTGCCAAAGGTGTCGCCAC+CGG 0.553605 8:-7563379 None:intergenic
CGTCATTGGGCCCCATCTCG+AGG 0.556400 8:+7563612 MsG0880042360.01.T01:CDS
TGGCGGAGGATTACGGAGGA+GGG 0.557209 8:-7563507 None:intergenic
GACAATGAAACCAAACGACA+TGG 0.562304 8:-7564296 None:intergenic
GGCGCGTTAATTTCAAGTGA+AGG 0.565512 8:-7564175 None:intergenic
TTTAGAGCTCATGCTGACCT+GGG 0.566033 8:+7564609 MsG0880042360.01.T01:CDS
GCATCTAGGAGCTTGAGTAA+TGG 0.570363 8:-7564319 None:intergenic
TCTCAAAATTCAGATCTACA+AGG 0.571443 8:+7564684 MsG0880042360.01.T01:CDS
ATGAGACAATTAGGAACACT+TGG 0.572179 8:-7564922 None:intergenic
GTGGACAAACAGTGGCTGCT+TGG 0.586558 8:+7564541 MsG0880042360.01.T01:intron
CAAACGACATGGGATAGAGA+TGG 0.595053 8:-7564285 None:intergenic
CAATTAGGAACACTTGGCTG+TGG 0.595075 8:-7564916 None:intergenic
GGAGCCCATCCTAAAATTGG+TGG 0.598007 8:-7564895 None:intergenic
GTGCTGATTCAGTTAACAGG+TGG 0.598362 8:+7563581 MsG0880042360.01.T01:CDS
ATTAACAGAATCTTCAATGA+CGG 0.599299 8:-7563983 None:intergenic
CCGGCGAGATAGACAGCTGG+TGG 0.600529 8:-7563360 None:intergenic
GCACCTGGAGATTCTGCCAA+AGG 0.600967 8:-7563391 None:intergenic
TGATCTCCGTTCAGACAACA+TGG 0.611514 8:+7563645 MsG0880042360.01.T01:CDS
GGTTTACACGAATTGTCCCA+TGG 0.615081 8:-7563934 None:intergenic
GATGGGATGCATCTTCCGAA+TGG 0.618917 8:-7563527 None:intergenic
TGCTGATTCAGTTAACAGGT+GGG 0.620571 8:+7563582 MsG0880042360.01.T01:CDS
ACAACGGAGTGAGCACAGAT+GGG 0.629146 8:-7563544 None:intergenic
CCACCGGCGAGATAGACAGC+TGG 0.631496 8:-7563363 None:intergenic
CGTTGTCCATGTTGTCTGAA+CGG 0.632025 8:-7563651 None:intergenic
AGGTGAAGTTCCTCGAGATG+GGG 0.635365 8:-7563622 None:intergenic
ATGTTAAGGTACTCAAGATG+AGG 0.643237 8:-7564196 None:intergenic
ACAATGAAACCAAACGACAT+GGG 0.644148 8:-7564295 None:intergenic
GGGATGCATCTTCCGAATGG+CGG 0.645970 8:-7563524 None:intergenic
TTCTTTGCTGACAATGACAG+TGG 0.650414 8:+7564148 MsG0880042360.01.T01:CDS
TAGTGAATTGCAGTTAACCC+AGG 0.650768 8:-7564626 None:intergenic
ACGTGAGTTGTCATCGACAA+CGG 0.652346 8:-7563560 None:intergenic
TCTATCAATGCACTCCTCCG+TGG 0.656381 8:+7564031 MsG0880042360.01.T01:CDS
TAGACAGCTGGTGGAAACCA+CGG 0.657908 8:-7563351 None:intergenic
CCAGCTGTCTATCTCGCCGG+TGG 0.664869 8:+7563363 MsG0880042360.01.T01:CDS
CACGCAGAACTTGCACAATG+TGG 0.672729 8:+7564249 MsG0880042360.01.T01:CDS
TGTAAGTTGGCACATTCCAG+AGG 0.679400 8:-7565121 None:intergenic
ACGCCTCCCGACCAAAACCG+TGG 0.688622 8:+7563334 MsG0880042360.01.T01:CDS
CGAATGGCGGAGGATTACGG+AGG 0.756218 8:-7563511 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATGATTTATTTATTTA+TGG + Chr8:7564482-7564501 MsG0880042360.01.T01:intron 10.0%
!! AAAACCTTTAAATTGAATAA+AGG - Chr8:7564959-7564978 None:intergenic 15.0%
!! TTAATCATGTATATATTAAG+TGG - Chr8:7564819-7564838 None:intergenic 15.0%
!!! GTTTAATTTGAAGTTTAATT+CGG + Chr8:7564710-7564729 MsG0880042360.01.T01:intron 15.0%
!! AAAAATTATCAAATGTGTCA+AGG + Chr8:7565097-7565116 MsG0880042360.01.T01:CDS 20.0%
!! AAAATTATCAAATGTGTCAA+GGG + Chr8:7565098-7565117 MsG0880042360.01.T01:CDS 20.0%
!!! ATTCAATTTAAAGGTTTTCA+AGG + Chr8:7564961-7564980 MsG0880042360.01.T01:CDS 20.0%
! AAGATTCTGTTAATTGACAT+TGG + Chr8:7563992-7564011 MsG0880042360.01.T01:CDS 25.0%
! AGATTTCAAGCAAATCATAT+TGG - Chr8:7563814-7563833 None:intergenic 25.0%
! ATTAACAGAATCTTCAATGA+CGG - Chr8:7563986-7564005 None:intergenic 25.0%
! ATTCTTGAAAAAGCAATTCA+CGG - Chr8:7564573-7564592 None:intergenic 25.0%
! CTGACCTTTATTCAATTTAA+AGG + Chr8:7564952-7564971 MsG0880042360.01.T01:CDS 25.0%
! CTTTAAATTGAATAAAGGTC+AGG - Chr8:7564954-7564973 None:intergenic 25.0%
! GTTGTTCTTTATTGTTTACT+AGG + Chr8:7563775-7563794 MsG0880042360.01.T01:intron 25.0%
! TTATGACCATGAAAAAAGAA+TGG + Chr8:7564087-7564106 MsG0880042360.01.T01:CDS 25.0%
! TTGCTTTCAATCTTAAGTAT+TGG + Chr8:7563852-7563871 MsG0880042360.01.T01:intron 25.0%
!! TGTTTAAAACATCATGGAAT+GGG - Chr8:7564231-7564250 None:intergenic 25.0%
!!! GATTATTTCTGATATTTCCT+TGG + Chr8:7565047-7565066 MsG0880042360.01.T01:CDS 25.0%
!!! GTTTTGTTCTAATTACTACT+TGG + Chr8:7564514-7564533 MsG0880042360.01.T01:intron 25.0%
!!! TTTTGTCCATTCTTTTTTCA+TGG - Chr8:7564096-7564115 None:intergenic 25.0%
CAAAACTTAACCTTAGTTGT+TGG - Chr8:7564379-7564398 None:intergenic 30.0%
TCTCAAAATTCAGATCTACA+AGG + Chr8:7564684-7564703 MsG0880042360.01.T01:CDS 30.0%
TTCTTGAAAAAGCAATTCAC+GGG - Chr8:7564572-7564591 None:intergenic 30.0%
! GCATCAGAATTTCTATGTTT+TGG - Chr8:7564060-7564079 None:intergenic 30.0%
! GTGTTTAAAACATCATGGAA+TGG - Chr8:7564232-7564251 None:intergenic 30.0%
! TAATTGTTGTAGAGCTTTGT+AGG - Chr8:7563958-7563977 None:intergenic 30.0%
!! AAGAGTCATCATTTTTGACA+TGG - Chr8:7563439-7563458 None:intergenic 30.0%
!! CATGTATTTTTATTGCCTAC+AGG + Chr8:7564867-7564886 MsG0880042360.01.T01:intron 30.0%
!! CTAATTACTACTTGGTAATG+TGG + Chr8:7564522-7564541 MsG0880042360.01.T01:intron 30.0%
ACAATGAAACCAAACGACAT+GGG - Chr8:7564298-7564317 None:intergenic 35.0%
ATGAGACAATTAGGAACACT+TGG - Chr8:7564925-7564944 None:intergenic 35.0%
CTTAACCAGCTCTTATGAAA+TGG + Chr8:7564754-7564773 MsG0880042360.01.T01:intron 35.0%
GACAAAAATCAGAAGAAGAC+TGG + Chr8:7563267-7563286 MsG0880042360.01.T01:CDS 35.0%
GTAATCCATTTCATAAGAGC+TGG - Chr8:7564762-7564781 None:intergenic 35.0%
TCAACAAATGACATCTCATC+TGG - Chr8:7564991-7565010 None:intergenic 35.0%
TCTTGAAAAAGCAATTCACG+GGG - Chr8:7564571-7564590 None:intergenic 35.0%
TGATATTTCCTTGGACCAAA+GGG + Chr8:7565056-7565075 MsG0880042360.01.T01:CDS 35.0%
TTTGAGTAGTCCAACAACTA+AGG + Chr8:7564366-7564385 MsG0880042360.01.T01:CDS 35.0%
! ATGTTAAGGTACTCAAGATG+AGG - Chr8:7564199-7564218 None:intergenic 35.0%
! CAAAGTTAGATGTTTTGTCC+CGG - Chr8:7564350-7564369 None:intergenic 35.0%
! GTTGAGCATGTTTTGCAAAA+AGG + Chr8:7565006-7565025 MsG0880042360.01.T01:CDS 35.0%
! TCTGCGTGTTTAAAACATCA+TGG - Chr8:7564237-7564256 None:intergenic 35.0%
!! ATTTTGAGAACTTGAAGCAC+AGG - Chr8:7564673-7564692 None:intergenic 35.0%
!! TCTTAAGTATTGGTGCTATG+TGG + Chr8:7563862-7563881 MsG0880042360.01.T01:intron 35.0%
AAACATCATGGAATGGGCAT+TGG - Chr8:7564225-7564244 None:intergenic 40.0%
AACATCATGGAATGGGCATT+GGG - Chr8:7564224-7564243 None:intergenic 40.0%
AGGTGCGATATGAGACAATT+AGG - Chr8:7564934-7564953 None:intergenic 40.0%
CATCTAGGAGCTTGAGTAAT+GGG - Chr8:7564321-7564340 None:intergenic 40.0%
CTGATATTTCCTTGGACCAA+AGG + Chr8:7565055-7565074 MsG0880042360.01.T01:CDS 40.0%
GACAATGAAACCAAACGACA+TGG - Chr8:7564299-7564318 None:intergenic 40.0%
GTTTGTTCCTCAGTATCCAT+GGG + Chr8:7563918-7563937 MsG0880042360.01.T01:intron 40.0%
TAGTGAATTGCAGTTAACCC+AGG - Chr8:7564629-7564648 None:intergenic 40.0%
TGTTTGTTCCTCAGTATCCA+TGG + Chr8:7563917-7563936 MsG0880042360.01.T01:intron 40.0%
TTCTTTGCTGACAATGACAG+TGG + Chr8:7564148-7564167 MsG0880042360.01.T01:CDS 40.0%
! AAAGAAGTCCAGCCTTTTCA+AGG - Chr8:7564134-7564153 None:intergenic 40.0%
!! ATGGGCATTGGGTAATGTTA+AGG - Chr8:7564213-7564232 None:intergenic 40.0%
!! TGCTGATTCAGTTAACAGGT+GGG + Chr8:7563582-7563601 MsG0880042360.01.T01:CDS 40.0%
!! TTGGTAATGTGGACAAACAG+TGG + Chr8:7564533-7564552 MsG0880042360.01.T01:intron 40.0%
!!! TTTCTATGTTTTGGCAGCCA+CGG - Chr8:7564051-7564070 None:intergenic 40.0%
AAGGTGAAGTTCCTCGAGAT+GGG - Chr8:7563626-7563645 None:intergenic 45.0%
AAGTGAAGAGGTTTAGAGGG+AGG - Chr8:7563693-7563712 None:intergenic 45.0%
ACATCCCACCTACCTTGAAA+AGG + Chr8:7564119-7564138 MsG0880042360.01.T01:CDS 45.0%
ACGTGAGTTGTCATCGACAA+CGG - Chr8:7563563-7563582 None:intergenic 45.0%
CAAACGACATGGGATAGAGA+TGG - Chr8:7564288-7564307 None:intergenic 45.0%
CAATTAGGAACACTTGGCTG+TGG - Chr8:7564919-7564938 None:intergenic 45.0%
CATCATCGAAATCTAGCACC+TGG - Chr8:7563409-7563428 None:intergenic 45.0%
CATCTCTATCCCATGTCGTT+TGG + Chr8:7564286-7564305 MsG0880042360.01.T01:CDS 45.0%
CGTTGTCCATGTTGTCTGAA+CGG - Chr8:7563654-7563673 None:intergenic 45.0%
GAATGTCGTACTTCTCCCTT+TGG - Chr8:7565074-7565093 None:intergenic 45.0%
GAATTGTCCCATGGATACTG+AGG - Chr8:7563928-7563947 None:intergenic 45.0%
GCATCTAGGAGCTTGAGTAA+TGG - Chr8:7564322-7564341 None:intergenic 45.0%
GCCTGAGTAAAACGAGGTTA+GGG - Chr8:7563717-7563736 None:intergenic 45.0%
GGCAAGTGAAGAGGTTTAGA+GGG - Chr8:7563696-7563715 None:intergenic 45.0%
GGTTTACACGAATTGTCCCA+TGG - Chr8:7563937-7563956 None:intergenic 45.0%
TGATCTCCGTTCAGACAACA+TGG + Chr8:7563645-7563664 MsG0880042360.01.T01:CDS 45.0%
TGCCTGAGTAAAACGAGGTT+AGG - Chr8:7563718-7563737 None:intergenic 45.0%
TGTGGAGCCCATCCTAAAAT+TGG - Chr8:7564901-7564920 None:intergenic 45.0%
TGTTGTCTGAACGGAGATCA+AGG - Chr8:7563645-7563664 None:intergenic 45.0%
TTGCTGACAATGACAGTGGT+GGG + Chr8:7564152-7564171 MsG0880042360.01.T01:CDS 45.0%
TTTGCTGACAATGACAGTGG+TGG + Chr8:7564151-7564170 MsG0880042360.01.T01:CDS 45.0%
! ACTCAGAAGCTTCGCTGTTT+TGG + Chr8:7563469-7563488 MsG0880042360.01.T01:CDS 45.0%
! ATTTAGAGCTCATGCTGACC+TGG + Chr8:7564608-7564627 MsG0880042360.01.T01:CDS 45.0%
! GGCGCGTTAATTTCAAGTGA+AGG - Chr8:7564178-7564197 None:intergenic 45.0%
! TGTAAGTTGGCACATTCCAG+AGG - Chr8:7565124-7565143 None:intergenic 45.0%
! TTTAGAGCTCATGCTGACCT+GGG + Chr8:7564609-7564628 MsG0880042360.01.T01:CDS 45.0%
!! AAGTCCAGCCTTTTCAAGGT+AGG - Chr8:7564130-7564149 None:intergenic 45.0%
!! AGCAGCCACCAATTTTAGGA+TGG + Chr8:7564890-7564909 MsG0880042360.01.T01:CDS 45.0%
!! CACGTGCTGATTCAGTTAAC+AGG + Chr8:7563578-7563597 MsG0880042360.01.T01:CDS 45.0%
!! GTGCTGATTCAGTTAACAGG+TGG + Chr8:7563581-7563600 MsG0880042360.01.T01:CDS 45.0%
!!! GCAGCCACCAATTTTAGGAT+GGG + Chr8:7564891-7564910 MsG0880042360.01.T01:CDS 45.0%
AAGCGTGCCTGAGTAAAACG+AGG - Chr8:7563723-7563742 None:intergenic 50.0%
AAGCTCCTAGATGCTCTGTC+CGG + Chr8:7564328-7564347 MsG0880042360.01.T01:CDS 50.0%
ACAACGGAGTGAGCACAGAT+GGG - Chr8:7563547-7563566 None:intergenic 50.0%
ACACCTTTGGCAGAATCTCC+AGG + Chr8:7563388-7563407 MsG0880042360.01.T01:CDS 50.0%
AGGTGAAGTTCCTCGAGATG+GGG - Chr8:7563625-7563644 None:intergenic 50.0%
CAAGGTGAAGTTCCTCGAGA+TGG - Chr8:7563627-7563646 None:intergenic 50.0%
CACGCAGAACTTGCACAATG+TGG + Chr8:7564249-7564268 MsG0880042360.01.T01:CDS 50.0%
GAGGTTTAGAGGGAGGTTGA+AGG - Chr8:7563686-7563705 None:intergenic 50.0%
GATGGGATGCATCTTCCGAA+TGG - Chr8:7563530-7563549 None:intergenic 50.0%
GGAGCCCATCCTAAAATTGG+TGG - Chr8:7564898-7564917 None:intergenic 50.0%
GGGCAAGTGAAGAGGTTTAG+AGG - Chr8:7563697-7563716 None:intergenic 50.0%
GTACTTCTCCCTTTGGTCCA+AGG - Chr8:7565067-7565086 None:intergenic 50.0%
TAGACAGCTGGTGGAAACCA+CGG - Chr8:7563354-7563373 None:intergenic 50.0%
TCAAATGTGTCAAGGGCCTC+TGG + Chr8:7565105-7565124 MsG0880042360.01.T01:CDS 50.0%
TCTATCAATGCACTCCTCCG+TGG + Chr8:7564031-7564050 MsG0880042360.01.T01:CDS 50.0%
TGGTTGAGCAGCACATTGTC+TGG - Chr8:7563305-7563324 None:intergenic 50.0%
! AAATTGGTGGCTGCTCCTGT+AGG - Chr8:7564885-7564904 None:intergenic 50.0%
! CAGGAGCAGCCACCAATTTT+AGG + Chr8:7564886-7564905 MsG0880042360.01.T01:intron 50.0%
! GCCCTAACCTCGTTTTACTC+AGG + Chr8:7563713-7563732 MsG0880042360.01.T01:intron 50.0%
! TTCCGAATGGCGGAGGATTA+CGG - Chr8:7563517-7563536 None:intergenic 50.0%
!! CCAGCCTTTTCAAGGTAGGT+GGG - Chr8:7564126-7564145 None:intergenic 50.0%
!! GTGGAAACCACGGTTTTGGT+CGG - Chr8:7563344-7563363 None:intergenic 50.0%
!! TCCAGCCTTTTCAAGGTAGG+TGG - Chr8:7564127-7564146 None:intergenic 50.0%
!! TGGAAACCACGGTTTTGGTC+GGG - Chr8:7563343-7563362 None:intergenic 50.0%
AGCTCCTAGATGCTCTGTCC+GGG + Chr8:7564329-7564348 MsG0880042360.01.T01:CDS 55.0%
ATGCATCTTCCGAATGGCGG+AGG - Chr8:7563524-7563543 None:intergenic 55.0%
CCCACCTACCTTGAAAAGGC+TGG + Chr8:7564123-7564142 MsG0880042360.01.T01:CDS 55.0%
CGAGGTTAGGGCAAGTGAAG+AGG - Chr8:7563705-7563724 None:intergenic 55.0%
CTCCGTAATCCTCCGCCATT+CGG + Chr8:7563512-7563531 MsG0880042360.01.T01:CDS 55.0%
GACAACGGAGTGAGCACAGA+TGG - Chr8:7563548-7563567 None:intergenic 55.0%
GAGGATTACGGAGGAGGGAA+AGG - Chr8:7563505-7563524 None:intergenic 55.0%
GCACCTGGAGATTCTGCCAA+AGG - Chr8:7563394-7563413 None:intergenic 55.0%
GGGATGCATCTTCCGAATGG+CGG - Chr8:7563527-7563546 None:intergenic 55.0%
GTGGACAAACAGTGGCTGCT+TGG + Chr8:7564541-7564560 MsG0880042360.01.T01:intron 55.0%
! GCTGGTGGAAACCACGGTTT+TGG - Chr8:7563348-7563367 None:intergenic 55.0%
! TTGTCCCGGACAGAGCATCT+AGG - Chr8:7564336-7564355 None:intergenic 55.0%
!! AAACCACGGTTTTGGTCGGG+AGG - Chr8:7563340-7563359 None:intergenic 55.0%
!!! CTATGTTTTGGCAGCCACGG+AGG - Chr8:7564048-7564067 None:intergenic 55.0%
CCACCAGCTGTCTATCTCGC+CGG + Chr8:7563360-7563379 MsG0880042360.01.T01:CDS 60.0%
CTCGAGATGGGGCCCAATGA+CGG - Chr8:7563614-7563633 None:intergenic 60.0%
TGGCGGAGGATTACGGAGGA+GGG - Chr8:7563510-7563529 None:intergenic 60.0%
! AGGTGGGTTCGTGCCGTCAT+TGG + Chr8:7563598-7563617 MsG0880042360.01.T01:CDS 60.0%
! ATGGCGGAGGATTACGGAGG+AGG - Chr8:7563511-7563530 None:intergenic 60.0%
! CGAATGGCGGAGGATTACGG+AGG - Chr8:7563514-7563533 None:intergenic 60.0%
! GGTGGGTTCGTGCCGTCATT+GGG + Chr8:7563599-7563618 MsG0880042360.01.T01:CDS 60.0%
!! TCTGCCAAAGGTGTCGCCAC+CGG - Chr8:7563382-7563401 None:intergenic 60.0%
!! TTTTGGTCGGGAGGCGTGAG+AGG - Chr8:7563331-7563350 None:intergenic 60.0%
ACGCCTCCCGACCAAAACCG+TGG + Chr8:7563334-7563353 MsG0880042360.01.T01:CDS 65.0%
CCACCGGCGAGATAGACAGC+TGG - Chr8:7563366-7563385 None:intergenic 65.0%
CCAGCTGTCTATCTCGCCGG+TGG + Chr8:7563363-7563382 MsG0880042360.01.T01:CDS 65.0%
CCGGCGAGATAGACAGCTGG+TGG - Chr8:7563363-7563382 None:intergenic 65.0%
CGTCATTGGGCCCCATCTCG+AGG + Chr8:7563612-7563631 MsG0880042360.01.T01:CDS 65.0%
! TCGGGAGGCGTGAGAGGATG+TGG - Chr8:7563325-7563344 None:intergenic 65.0%
CTCGCCGGTGGCGACACCTT+TGG + Chr8:7563375-7563394 MsG0880042360.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 7563245 7565152 7563245 ID=MsG0880042360.01;Name=MsG0880042360.01
Chr8 mRNA 7563245 7565152 7563245 ID=MsG0880042360.01.T01;Parent=MsG0880042360.01;Name=MsG0880042360.01.T01;_AED=0.41;_eAED=0.48;_QI=0|0|0|0.8|1|1|5|0|447
Chr8 exon 7563245 7563672 7563245 ID=MsG0880042360.01.T01:exon:2004;Parent=MsG0880042360.01.T01
Chr8 exon 7563797 7563838 7563797 ID=MsG0880042360.01.T01:exon:2005;Parent=MsG0880042360.01.T01
Chr8 exon 7563931 7564387 7563931 ID=MsG0880042360.01.T01:exon:2006;Parent=MsG0880042360.01.T01
Chr8 exon 7564553 7564705 7564553 ID=MsG0880042360.01.T01:exon:2007;Parent=MsG0880042360.01.T01
Chr8 exon 7564889 7565152 7564889 ID=MsG0880042360.01.T01:exon:2008;Parent=MsG0880042360.01.T01
Chr8 CDS 7563245 7563672 7563245 ID=MsG0880042360.01.T01:cds;Parent=MsG0880042360.01.T01
Chr8 CDS 7563797 7563838 7563797 ID=MsG0880042360.01.T01:cds;Parent=MsG0880042360.01.T01
Chr8 CDS 7563931 7564387 7563931 ID=MsG0880042360.01.T01:cds;Parent=MsG0880042360.01.T01
Chr8 CDS 7564553 7564705 7564553 ID=MsG0880042360.01.T01:cds;Parent=MsG0880042360.01.T01
Chr8 CDS 7564889 7565152 7564889 ID=MsG0880042360.01.T01:cds;Parent=MsG0880042360.01.T01
Gene Sequence

>MsG0880042360.01.T01

ATGGAAGAATCGAATTCGAAACGACAAAAATCAGAAGAAGACTGGATTAGTAGTTTACCAGACAATGTGCTGCTCAACCACATCCTCTCACGCCTCCCGACCAAAACCGTGGTTTCCACCAGCTGTCTATCTCGCCGGTGGCGACACCTTTGGCAGAATCTCCAGGTGCTAGATTTCGATGATGACTATTTCCATGTCAAAAATGATGACTCTTTCGTTGATCGACTCAGAAGCTTCGCTGTTTTGGTTAACAGCGTCCTTTCCCTCCTCCGTAATCCTCCGCCATTCGGAAGATGCATCCCATCTGTGCTCACTCCGTTGTCGATGACAACTCACGTGCTGATTCAGTTAACAGGTGGGTTCGTGCCGTCATTGGGCCCCATCTCGAGGAACTTCACCTTGATCTCCGTTCAGACAACATGGACAACGAAATTGAATTTAACCAATATGATTTGCTTGAAATCTAACGTTATCCATGGGACAATTCGTGTAAACCTACAAAGCTCTACAACAATTAGTTTACCGTCATTGAAGATTCTGTTAATTGACATTGGTTTTATTGACATTCATTCTATCAATGCACTCCTCCGTGGCTGCCAAAACATAGAAATTCTGATGCTTAGCTTTTATGACCATGAAAAAAGAATGGACAAAATTTACATCCCACCTACCTTGAAAAGGCTGGACTTCTTTGCTGACAATGACAGTGGTGGGCCTTCACTTGAAATTAACGCGCCTCATCTTGAGTACCTTAACATTACCCAATGCCCATTCCATGATGTTTTAAACACGCAGAACTTGCACAATGTGGTAGAAGCAAGTCTCCATCTCTATCCCATGTCGTTTGGTTTCATTGTCCCATTACTCAAGCTCCTAGATGCTCTGTCCGGGACAAAACATCTAACTTTGAGTAGTCCAACAACTAAGTGGCTGCTTGGTGAACCCCGTGAATTGCTTTTTCAAGAATTTCGCTATTTGCTTCATTTAGAGCTCATGCTGACCTGGGTTAACTGCAATTCACTACTTTGCTTGCTTCAAAAATGTCCTGTGCTTCAAGTTCTCAAAATTCAGATCTACAAGGAGCAGCCACCAATTTTAGGATGGGCTCCACAGCCAAGTGTTCCTAATTGTCTCATATCGCACCTGACCTTTATTCAATTTAAAGGTTTTCAAGGATTTCCAGATGAGATGTCATTTGTTGAGCATGTTTTGCAAAAAGGACTTGTTTTGAAAACATTGATTATTTCTGATATTTCCTTGGACCAAAGGGAGAAGTACGACATTCTCAAAAAATTATCAAATGTGTCAAGGGCCTCTGGAATGTGCCAACTTACATTTGACTGA
Protein sequence

>MsG0880042360.01.T01

MEESNSKRQKSEEDWISSLPDNVLLNHILSRLPTKTVVSTSCLSRRWRHLWQNLQVLDFDDDYFHVKNDDSFVDRLRSFAVLVNSVLSLLRNPPPFGRCIPSVLTPLSMTTHVLIQLTGGFVPSLGPISRNFTLISVQTTWTTKLNLTNMICLKSNVIHGTIRVNLQSSTTISLPSLKILLIDIGFIDIHSINALLRGCQNIEILMLSFYDHEKRMDKIYIPPTLKRLDFFADNDSGGPSLEINAPHLEYLNITQCPFHDVLNTQNLHNVVEASLHLYPMSFGFIVPLLKLLDALSGTKHLTLSSPTTKWLLGEPRELLFQEFRYLLHLELMLTWVNCNSLLCLLQKCPVLQVLKIQIYKEQPPILGWAPQPSVPNCLISHLTFIQFKGFQGFPDEMSFVEHVLQKGLVLKTLIISDISLDQREKYDILKKLSNVSRASGMCQLTFD*