AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017846.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017846.01.T01 MTR_3g082890 69.277 332 81 6 1 315 157 484 3.11e-148 426
MsG0380017846.01.T01 MTR_3g082890 61.957 368 84 6 1 315 77 441 2.64e-141 406
MsG0380017846.01.T01 MTR_3g113770 65.455 220 12 3 58 276 179 335 1.00e-87 266
MsG0380017846.01.T01 MTR_2g020180 64.000 225 54 2 104 315 5 215 3.79e-87 260
MsG0380017846.01.T01 MTR_7g081290 77.931 145 23 3 173 315 119 256 9.34e-73 225
MsG0380017846.01.T01 MTR_7g098510 41.304 322 171 11 1 315 81 391 4.54e-68 218
MsG0380017846.01.T01 MTR_1g041245 41.486 323 171 12 1 315 74 386 1.04e-63 206
MsG0380017846.01.T01 MTR_7g098570 40.252 318 165 11 1 309 83 384 1.40e-60 201
MsG0380017846.01.T01 MTR_0543s0010 38.535 314 174 10 4 314 152 449 3.25e-53 181
MsG0380017846.01.T01 MTR_7g098480 37.419 310 177 9 4 309 84 380 1.59e-52 179
MsG0380017846.01.T01 MTR_7g032370 38.994 318 167 10 4 315 56 352 1.92e-52 176
MsG0380017846.01.T01 MTR_7g034120 39.329 328 166 16 1 315 1 308 2.46e-52 174
MsG0380017846.01.T01 MTR_7g033990 40.439 319 162 12 1 309 74 374 3.64e-51 174
MsG0380017846.01.T01 MTR_0492s0020 38.411 302 170 9 4 305 152 437 1.23e-50 173
MsG0380017846.01.T01 MTR_7g056433 37.195 328 180 12 1 315 75 389 6.04e-50 171
MsG0380017846.01.T01 MTR_7g088260 37.346 324 179 13 1 315 154 462 3.86e-49 170
MsG0380017846.01.T01 MTR_7g034115 38.006 321 179 10 1 315 74 380 3.78e-48 166
MsG0380017846.01.T01 MTR_3g115430 60.305 131 45 2 186 315 1 125 3.75e-47 155
MsG0380017846.01.T01 MTR_7g033915 36.810 326 159 13 1 314 74 364 4.47e-47 162
MsG0380017846.01.T01 MTR_3g036250 36.111 324 167 12 1 312 68 363 1.60e-46 161
MsG0380017846.01.T01 MTR_7g032380 35.577 312 156 10 10 315 84 356 3.94e-45 157
MsG0380017846.01.T01 MTR_3g040700 36.042 283 155 8 1 278 106 367 1.19e-43 155
MsG0380017846.01.T01 MTR_5g008950 35.821 268 154 9 53 315 111 365 1.22e-43 154
MsG0380017846.01.T01 MTR_7g115270 34.218 339 182 11 1 312 75 399 1.26e-43 154
MsG0380017846.01.T01 MTR_3g113785 79.570 93 17 1 186 276 1 93 2.11e-42 142
MsG0380017846.01.T01 MTR_3g108560 34.675 323 185 9 1 314 83 388 5.79e-42 149
MsG0380017846.01.T01 MTR_3g108150 35.913 323 182 12 3 314 78 386 1.80e-41 148
MsG0380017846.01.T01 MTR_3g087260 38.667 300 149 12 29 314 178 456 4.80e-41 148
MsG0380017846.01.T01 MTR_5g008920 35.018 277 163 7 42 315 119 381 2.03e-40 145
MsG0380017846.01.T01 MTR_5g012840 35.077 325 143 13 1 315 52 318 8.04e-40 142
MsG0380017846.01.T01 MTR_5g013500 33.432 338 172 13 1 315 58 365 9.82e-40 143
MsG0380017846.01.T01 MTR_3g109982 39.922 258 140 10 55 308 220 466 2.66e-37 141
MsG0380017846.01.T01 MTR_3g109982 29.694 229 143 9 1 226 76 289 8.08e-13 69.3
MsG0380017846.01.T01 MTR_3g467400 34.462 325 162 10 9 315 76 367 6.58e-37 135
MsG0380017846.01.T01 MTR_7g056420 34.906 318 165 10 1 309 72 356 1.02e-35 137
MsG0380017846.01.T01 MTR_7g056430 34.591 318 166 9 1 309 72 356 1.16e-35 137
MsG0380017846.01.T01 MTR_3g023630 30.449 312 190 7 4 309 75 365 6.71e-35 130
MsG0380017846.01.T01 MTR_7g056020 33.121 314 181 12 3 309 74 365 1.85e-34 132
MsG0380017846.01.T01 MTR_1g043170 62.963 81 30 0 235 315 8 88 9.22e-33 117
MsG0380017846.01.T01 MTR_3g105060 31.988 322 180 12 4 315 81 373 6.02e-32 122
MsG0380017846.01.T01 MTR_3g114200 76.712 73 17 0 1 73 83 155 4.22e-30 112
MsG0380017846.01.T01 MTR_4g080610 34.728 239 140 8 85 314 125 356 4.55e-30 117
MsG0380017846.01.T01 MTR_7g056277 30.255 314 182 12 16 315 338 628 2.76e-29 118
MsG0380017846.01.T01 MTR_7g056287 29.618 314 184 12 16 315 82 372 3.73e-29 115
MsG0380017846.01.T01 MTR_7g055943 29.730 333 182 12 9 315 115 421 6.03e-27 110
MsG0380017846.01.T01 MTR_1g108800 34.328 268 142 9 58 312 93 339 8.45e-27 108
MsG0380017846.01.T01 MTR_2g007450 31.274 259 138 7 54 287 151 394 1.21e-26 108
MsG0380017846.01.T01 MTR_1g085120 27.964 329 191 10 9 315 167 471 7.01e-26 107
MsG0380017846.01.T01 MTR_7g007080 31.081 296 173 11 26 312 103 376 7.93e-26 106
MsG0380017846.01.T01 MTR_1g085120 27.964 329 191 10 9 315 242 546 1.18e-25 107
MsG0380017846.01.T01 MTR_1g108820 30.519 308 168 14 29 312 98 383 2.29e-25 105
MsG0380017846.01.T01 MTR_7g026500 30.211 331 181 16 9 314 89 394 2.55e-24 102
MsG0380017846.01.T01 MTR_5g045170 31.724 290 175 9 33 312 112 388 3.71e-24 101
MsG0380017846.01.T01 MTR_6g045333 29.375 320 198 9 10 314 139 445 4.35e-24 102
MsG0380017846.01.T01 MTR_7g114710 32.422 256 138 9 63 315 141 364 4.67e-24 100
MsG0380017846.01.T01 MTR_6g022500 29.231 325 188 13 9 315 176 476 1.16e-23 101
MsG0380017846.01.T01 MTR_4g098590 31.000 300 157 11 15 285 76 354 2.53e-23 99.0
MsG0380017846.01.T01 MTR_1g053025 26.686 341 200 15 1 313 69 387 3.62e-23 99.0
MsG0380017846.01.T01 MTR_3g107120 28.826 281 173 10 34 308 122 381 6.45e-23 98.2
MsG0380017846.01.T01 MTR_8g085430 48.039 102 51 2 205 305 215 315 1.24e-21 93.6
MsG0380017846.01.T01 MTR_3g107100 28.852 305 178 12 34 315 110 398 3.42e-21 93.6
MsG0380017846.01.T01 MTR_3g107160 26.871 294 181 10 34 315 112 383 6.58e-21 92.4
MsG0380017846.01.T01 MTR_5g058000 30.032 313 191 11 9 314 83 374 1.54e-20 91.3
MsG0380017846.01.T01 MTR_5g058100 30.556 324 185 14 9 315 84 384 1.94e-20 91.3
MsG0380017846.01.T01 MTR_1g107385 28.519 270 168 10 54 312 165 420 2.64e-20 90.9
MsG0380017846.01.T01 MTR_6g022360 27.329 322 199 11 9 314 105 407 4.31e-20 90.5
MsG0380017846.01.T01 MTR_5g007410 29.276 304 181 11 17 308 117 398 4.65e-20 90.5
MsG0380017846.01.T01 MTR_6g022520 28.783 337 194 14 1 315 1 313 5.98e-20 89.0
MsG0380017846.01.T01 MTR_4g039440 28.869 336 200 14 1 315 95 412 6.16e-20 90.1
MsG0380017846.01.T01 MTR_6g011460 28.267 329 196 12 4 315 116 421 1.10e-19 89.4
MsG0380017846.01.T01 MTR_5g083890 28.622 283 159 11 54 313 141 403 1.16e-19 89.7
MsG0380017846.01.T01 MTR_6g040270 27.636 275 159 10 55 312 127 378 2.02e-19 88.2
MsG0380017846.01.T01 MTR_3g026920 25.455 330 172 9 1 287 85 383 2.17e-19 88.2
MsG0380017846.01.T01 MTR_5g073420 27.734 256 158 9 33 285 113 344 2.40e-19 87.8
MsG0380017846.01.T01 MTR_1g066830 26.791 321 201 11 10 314 84 386 2.58e-19 87.8
MsG0380017846.01.T01 MTR_7g034110 30.108 279 129 12 1 270 74 295 4.18e-19 87.0
MsG0380017846.01.T01 MTR_2g008320 29.918 244 141 8 55 285 173 399 1.20e-18 86.3
MsG0380017846.01.T01 MTR_0009s0080 30.000 290 162 11 33 304 120 386 2.33e-18 85.5
MsG0380017846.01.T01 MTR_7g083740 27.935 247 153 10 78 314 135 366 2.46e-18 85.1
MsG0380017846.01.T01 MTR_3g107940 36.364 154 83 4 156 308 64 203 3.65e-18 84.3
MsG0380017846.01.T01 MTR_3g071850 26.198 313 202 8 10 308 102 399 4.38e-18 85.5
MsG0380017846.01.T01 MTR_2g007500 29.615 260 142 11 26 262 91 332 1.33e-17 82.4
MsG0380017846.01.T01 MTR_3g108560 31.278 227 138 7 1 221 83 297 1.71e-17 82.0
MsG0380017846.01.T01 MTR_5g008910 51.220 82 32 4 238 315 225 302 1.86e-17 81.6
MsG0380017846.01.T01 MTR_2g007400 30.612 245 142 10 57 287 147 377 2.90e-17 82.0
MsG0380017846.01.T01 MTR_1089s0010 26.791 321 195 11 10 315 84 379 8.10e-17 80.5
MsG0380017846.01.T01 MTR_5g063950 26.452 310 192 12 18 315 77 362 1.30e-16 79.7
MsG0380017846.01.T01 MTR_5g054920 37.615 109 57 3 178 285 79 177 1.72e-16 76.6
MsG0380017846.01.T01 MTR_7g022105 29.249 253 161 6 59 303 169 411 1.98e-16 79.7
MsG0380017846.01.T01 MTR_5g073370 28.571 238 149 9 53 285 126 347 3.17e-16 79.0
MsG0380017846.01.T01 MTR_7g060470 26.953 256 147 10 59 292 129 366 6.02e-16 78.2
MsG0380017846.01.T01 MTR_2g005990 29.555 247 141 10 55 285 138 367 1.06e-15 77.4
MsG0380017846.01.T01 MTR_3g108140 47.500 80 39 1 238 314 68 147 1.29e-15 73.9
MsG0380017846.01.T01 MTR_2g008310 28.968 252 141 10 50 285 114 343 1.35e-15 77.0
MsG0380017846.01.T01 MTR_2g036470 27.108 332 197 14 3 312 85 393 4.55e-15 75.5
MsG0380017846.01.T01 MTR_3g099830 29.054 296 183 10 4 285 64 346 5.18e-15 75.1
MsG0380017846.01.T01 MTR_2g007550 31.928 166 83 6 140 287 160 313 6.42e-15 74.7
MsG0380017846.01.T01 MTR_7g075820 26.568 271 167 9 54 312 141 391 8.61e-15 74.7
MsG0380017846.01.T01 MTR_2g020170 69.231 52 16 0 1 52 88 139 9.19e-15 70.5
MsG0380017846.01.T01 MTR_7g056280 29.082 196 123 6 99 285 358 546 1.75e-14 74.3
MsG0380017846.01.T01 MTR_7g021990 28.906 256 158 7 59 303 168 410 2.26e-14 73.6
MsG0380017846.01.T01 MTR_4g134150 34.857 175 93 7 1 170 73 231 2.31e-14 71.6
MsG0380017846.01.T01 MTR_7g021950 28.516 256 159 7 59 303 168 410 2.35e-14 73.9
MsG0380017846.01.T01 MTR_6g044572 27.066 351 185 13 2 315 72 388 2.66e-14 73.2
MsG0380017846.01.T01 MTR_5g039450 27.619 315 151 15 22 313 96 356 3.70e-14 72.8
MsG0380017846.01.T01 MTR_4g096730 43.373 83 39 2 237 315 11 89 4.68e-14 67.4
MsG0380017846.01.T01 MTR_6g044560 27.350 351 184 13 2 315 248 564 7.42e-14 72.4
MsG0380017846.01.T01 MTR_1377s0010 33.945 109 61 2 177 285 30 127 2.49e-13 66.6
MsG0380017846.01.T01 MTR_7g007340 27.801 241 155 6 50 285 103 329 4.21e-13 69.7
MsG0380017846.01.T01 MTR_5g073340 27.092 251 160 8 22 262 71 308 4.82e-13 68.9
MsG0380017846.01.T01 MTR_7g022060 25.714 315 183 15 10 309 43 321 5.62e-13 68.9
MsG0380017846.01.T01 MTR_5g084070 23.167 341 192 10 24 311 97 420 7.61e-13 68.9
MsG0380017846.01.T01 MTR_5g045510 26.045 311 186 11 4 304 82 358 1.43e-12 68.2
MsG0380017846.01.T01 MTR_5g039470 26.449 276 162 11 22 280 75 326 1.66e-12 67.4
MsG0380017846.01.T01 MTR_5g039490 26.733 303 170 11 18 312 115 373 3.35e-12 67.0
MsG0380017846.01.T01 MTR_8g077460 32.000 150 85 5 169 315 240 375 5.25e-12 66.2
MsG0380017846.01.T01 MTR_7g021930 25.397 315 184 15 10 309 43 321 9.63e-12 65.1
MsG0380017846.01.T01 MTR_7g021970 25.397 315 184 15 10 309 43 321 9.63e-12 65.1
MsG0380017846.01.T01 MTR_2g007090 25.847 236 139 8 85 314 88 293 1.33e-11 64.7
MsG0380017846.01.T01 MTR_3g106960 35.135 111 62 3 179 288 73 174 1.35e-11 63.9
MsG0380017846.01.T01 MTR_1g085120 25.862 232 136 7 9 221 254 468 5.48e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017846.01.T01 AT5G56370 28.571 315 171 9 48 314 112 420 2.86e-17 82.4
MsG0380017846.01.T01 AT5G56370 28.571 315 171 9 48 314 112 420 2.86e-17 82.4
MsG0380017846.01.T01 AT4G26340 27.035 344 184 15 26 315 89 419 2.65e-14 73.6
MsG0380017846.01.T01 AT5G56440 26.301 346 185 11 24 310 88 422 9.11e-14 72.0
MsG0380017846.01.T01 AT5G62970 24.791 359 206 12 10 314 100 448 5.73e-13 69.7
MsG0380017846.01.T01 AT1G55030 26.006 323 164 13 15 280 90 394 2.11e-12 67.8
MsG0380017846.01.T01 AT1G55030 26.006 323 164 13 15 280 80 384 2.20e-12 67.8
MsG0380017846.01.T01 AT3G26920 26.623 308 189 14 26 314 11 300 8.72e-11 62.4

Find 63 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTGTCTGCTGCTGTTT+TGG 0.150749 3:-101352282 None:intergenic
AAGCTTAGCTGTCACTAAAT+TGG 0.187060 3:-101352315 None:intergenic
GTGCTTGGCATTTAAATCTA+TGG 0.236293 3:-101352953 None:intergenic
AGGCATTCCGGAACAATCTT+TGG 0.251117 3:-101352805 None:intergenic
CTTACTGTTCTCAAAATAAA+AGG 0.284666 3:+101352086 MsG0380017846.01.T01:CDS
CTTCCAACATATTCACTTGT+AGG 0.295079 3:+101352060 MsG0380017846.01.T01:CDS
AGAATCCACATCCACTTCTT+AGG 0.312467 3:-101352572 None:intergenic
GTTTACAGGAGATTGAAAAT+AGG 0.337889 3:+101352740 MsG0380017846.01.T01:intron
TTTGTATTGCTGCAATAATA+AGG 0.344526 3:-101351980 None:intergenic
GTCTTTATTTACCAAATCAT+AGG 0.352378 3:+101352180 MsG0380017846.01.T01:CDS
ATGATGATGATGAGGTCATT+TGG 0.364179 3:+101352776 MsG0380017846.01.T01:CDS
AGCCGAGAGGAAAGGCATTC+CGG 0.369666 3:-101352817 None:intergenic
TGATGATGATGAGGTCATTT+GGG 0.376116 3:+101352777 MsG0380017846.01.T01:CDS
ATGATAAGATGTTGAAGCTT+TGG 0.379176 3:-101352614 None:intergenic
AATGGGGACTTGGACACAAT+GGG 0.380126 3:-101352495 None:intergenic
TGTTTGCAATTCCTCTAGAA+TGG 0.393795 3:-101352231 None:intergenic
GGAGGACCCAAAGATTGTTC+CGG 0.403048 3:+101352798 MsG0380017846.01.T01:CDS
AGCTTAGCTGTCACTAAATT+GGG 0.404163 3:-101352314 None:intergenic
GGCATTCCGGAACAATCTTT+GGG 0.405579 3:-101352804 None:intergenic
GGAGCTATTCTCTAACTTAG+AGG 0.410241 3:+101352538 MsG0380017846.01.T01:CDS
TCCTTTCTTCTTGCTTTCCA+AGG 0.413158 3:+101352355 MsG0380017846.01.T01:CDS
GAAATATTATTATTTATTTG+AGG 0.414448 3:-101352131 None:intergenic
TTCCGGAATGCCTTTCCTCT+CGG 0.420426 3:+101352815 MsG0380017846.01.T01:CDS
TAAACAACGTGTTAAGTTCA+AGG 0.426836 3:-101352016 None:intergenic
TTGAAGCGGAATGATCTTAT+CGG 0.428039 3:-101351918 None:intergenic
GTTTGCAATTCCTCTAGAAT+GGG 0.446597 3:-101352230 None:intergenic
GAATGTCATCCATGATTGAT+AGG 0.450517 3:-101352109 None:intergenic
AATAAAAGGCCTATCAATCA+TGG 0.455518 3:+101352100 MsG0380017846.01.T01:CDS
ATTGAAAATAGGATAGAGAA+TGG 0.461123 3:+101352751 MsG0380017846.01.T01:CDS
TTGATGATATGCCTATGATT+TGG 0.462421 3:-101352191 None:intergenic
AATATAAGTTTACATCCCCT+TGG 0.475469 3:-101353003 None:intergenic
TGCTTGTATAAGAATTATAG+AGG 0.477947 3:+101352847 MsG0380017846.01.T01:CDS
GAGATAATTTCTGTAACATC+TGG 0.480168 3:-101352975 None:intergenic
AAATGGGGACTTGGACACAA+TGG 0.507351 3:-101352496 None:intergenic
ATAAGGTCGGTGATATCGTT+GGG 0.511760 3:-101351963 None:intergenic
TTTCTGTAACATCTGGTGCT+TGG 0.511968 3:-101352968 None:intergenic
AGAAATTATCTCTGTATCCA+AGG 0.512166 3:+101352986 MsG0380017846.01.T01:CDS
TATACTGAGACTCCGTGCCT+TGG 0.519885 3:-101352372 None:intergenic
GCCTTGGAAAGCAAGAAGAA+AGG 0.521530 3:-101352356 None:intergenic
TCTTCTTGCTTTCCAAGGCA+CGG 0.529546 3:+101352360 MsG0380017846.01.T01:CDS
TCAACATCTTATCATTCAAG+AGG 0.533314 3:+101352622 MsG0380017846.01.T01:CDS
AATAAGGTCGGTGATATCGT+TGG 0.534562 3:-101351964 None:intergenic
GAAATTATCTCTGTATCCAA+GGG 0.539081 3:+101352987 MsG0380017846.01.T01:CDS
ATAAGAATTATAGAGGCAAA+AGG 0.539691 3:+101352854 MsG0380017846.01.T01:CDS
AAACAACGTGTTAAGTTCAA+GGG 0.539729 3:-101352015 None:intergenic
CTTATCCTTTCCCATTCTAG+AGG 0.545604 3:+101352220 MsG0380017846.01.T01:CDS
CAATTCCTCTAGAATGGGAA+AGG 0.547959 3:-101352225 None:intergenic
ACTGATCAAAACTCTCCACT+TGG 0.553083 3:+101352154 MsG0380017846.01.T01:CDS
ATCTAAGACAATATTTGAAG+CGG 0.554999 3:-101351932 None:intergenic
GGTCGGTGATATCGTTGGGT+TGG 0.565133 3:-101351959 None:intergenic
GCTGGCCTAAGAAGTGGATG+TGG 0.565846 3:+101352567 MsG0380017846.01.T01:CDS
ACGGAGTCTCAGTATAAAGC+TGG 0.569922 3:+101352379 MsG0380017846.01.T01:CDS
GTAAAAGCTGGCCTAAGAAG+TGG 0.574375 3:+101352561 MsG0380017846.01.T01:CDS
CGTCCTACAAGTGAATATGT+TGG 0.577132 3:-101352063 None:intergenic
GAGCTATTCTCTAACTTAGA+GGG 0.583276 3:+101352539 MsG0380017846.01.T01:CDS
ATCAAAACTCTCCACTTGGA+TGG 0.585019 3:+101352158 MsG0380017846.01.T01:CDS
TATTGCTGCAATAATAAGGT+CGG 0.593973 3:-101351976 None:intergenic
CTAACTTAGAGGGTAAAAGC+TGG 0.615677 3:+101352549 MsG0380017846.01.T01:CDS
GTAAATAAAGACCATCCAAG+TGG 0.641684 3:-101352169 None:intergenic
ATGGGGACTTGGACACAATG+GGG 0.653399 3:-101352494 None:intergenic
GAATGGAAATGATGATGATG+AGG 0.656320 3:+101352768 MsG0380017846.01.T01:CDS
AAATTATCTCTGTATCCAAG+GGG 0.713669 3:+101352988 MsG0380017846.01.T01:CDS
TGATGATGAGGTCATTTGGG+AGG 0.725843 3:+101352780 MsG0380017846.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATATTATTATTTATTTG+AGG - Chr3:101352134-101352153 None:intergenic 10.0%
!! GAAATTTACTTATTGTTTAC+AGG + Chr3:101352726-101352745 MsG0380017846.01.T01:intron 20.0%
!! TGAGTTAGATTGTAAAAAAT+GGG - Chr3:101352515-101352534 None:intergenic 20.0%
!! TTGAGTTAGATTGTAAAAAA+TGG - Chr3:101352516-101352535 None:intergenic 20.0%
!!! TAACTTTTGTTTCTTGTTTT+GGG + Chr3:101352701-101352720 MsG0380017846.01.T01:intron 20.0%
!!! TTAACTTTTGTTTCTTGTTT+TGG + Chr3:101352700-101352719 MsG0380017846.01.T01:intron 20.0%
!!! TTTTTACAATCTAACTCAAA+TGG + Chr3:101352517-101352536 MsG0380017846.01.T01:CDS 20.0%
! ACAAAAGTTAAGATATGTAG+AGG - Chr3:101352691-101352710 None:intergenic 25.0%
! ATAAGAATTATAGAGGCAAA+AGG + Chr3:101352854-101352873 MsG0380017846.01.T01:CDS 25.0%
! ATTGAAAATAGGATAGAGAA+TGG + Chr3:101352751-101352770 MsG0380017846.01.T01:CDS 25.0%
! CTTACTGTTCTCAAAATAAA+AGG + Chr3:101352086-101352105 MsG0380017846.01.T01:CDS 25.0%
! GAGTTAGATTGTAAAAAATG+GGG - Chr3:101352514-101352533 None:intergenic 25.0%
! TGCTTGTATAAGAATTATAG+AGG + Chr3:101352847-101352866 MsG0380017846.01.T01:CDS 25.0%
! TTTGTATTGCTGCAATAATA+AGG - Chr3:101351983-101352002 None:intergenic 25.0%
!! ATCTAAGACAATATTTGAAG+CGG - Chr3:101351935-101351954 None:intergenic 25.0%
!! GTCTTTATTTACCAAATCAT+AGG + Chr3:101352180-101352199 MsG0380017846.01.T01:CDS 25.0%
AAACAACGTGTTAAGTTCAA+GGG - Chr3:101352018-101352037 None:intergenic 30.0%
AAATTATCTCTGTATCCAAG+GGG + Chr3:101352988-101353007 MsG0380017846.01.T01:CDS 30.0%
AATAAAAGGCCTATCAATCA+TGG + Chr3:101352100-101352119 MsG0380017846.01.T01:CDS 30.0%
AATATAAGTTTACATCCCCT+TGG - Chr3:101353006-101353025 None:intergenic 30.0%
AGAAATTATCTCTGTATCCA+AGG + Chr3:101352986-101353005 MsG0380017846.01.T01:CDS 30.0%
ATGATAAGATGTTGAAGCTT+TGG - Chr3:101352617-101352636 None:intergenic 30.0%
GAAATTATCTCTGTATCCAA+GGG + Chr3:101352987-101353006 MsG0380017846.01.T01:CDS 30.0%
GAGATAATTTCTGTAACATC+TGG - Chr3:101352978-101352997 None:intergenic 30.0%
GTTTACAGGAGATTGAAAAT+AGG + Chr3:101352740-101352759 MsG0380017846.01.T01:intron 30.0%
TAAACAACGTGTTAAGTTCA+AGG - Chr3:101352019-101352038 None:intergenic 30.0%
TATTGCTGCAATAATAAGGT+CGG - Chr3:101351979-101351998 None:intergenic 30.0%
TCAACATCTTATCATTCAAG+AGG + Chr3:101352622-101352641 MsG0380017846.01.T01:CDS 30.0%
! TTGATGATATGCCTATGATT+TGG - Chr3:101352194-101352213 None:intergenic 30.0%
AAGCTTAGCTGTCACTAAAT+TGG - Chr3:101352318-101352337 None:intergenic 35.0%
AGCTTAGCTGTCACTAAATT+GGG - Chr3:101352317-101352336 None:intergenic 35.0%
CTTCCAACATATTCACTTGT+AGG + Chr3:101352060-101352079 MsG0380017846.01.T01:CDS 35.0%
CTTTGTAATTCATGCAGACA+TGG + Chr3:101352471-101352490 MsG0380017846.01.T01:intron 35.0%
GAATGTCATCCATGATTGAT+AGG - Chr3:101352112-101352131 None:intergenic 35.0%
GAGCTATTCTCTAACTTAGA+GGG + Chr3:101352539-101352558 MsG0380017846.01.T01:CDS 35.0%
GATTGTAAAAAATGGGGACT+TGG - Chr3:101352508-101352527 None:intergenic 35.0%
GTAAATAAAGACCATCCAAG+TGG - Chr3:101352172-101352191 None:intergenic 35.0%
GTGCTTGGCATTTAAATCTA+TGG - Chr3:101352956-101352975 None:intergenic 35.0%
TTGAAGCGGAATGATCTTAT+CGG - Chr3:101351921-101351940 None:intergenic 35.0%
! ATGATGATGATGAGGTCATT+TGG + Chr3:101352776-101352795 MsG0380017846.01.T01:CDS 35.0%
! GAATGGAAATGATGATGATG+AGG + Chr3:101352768-101352787 MsG0380017846.01.T01:CDS 35.0%
! TGATGATGATGAGGTCATTT+GGG + Chr3:101352777-101352796 MsG0380017846.01.T01:CDS 35.0%
! TGTTTGCAATTCCTCTAGAA+TGG - Chr3:101352234-101352253 None:intergenic 35.0%
!! GTTTGCAATTCCTCTAGAAT+GGG - Chr3:101352233-101352252 None:intergenic 35.0%
!!! CTTTTGTTTCTTGTTTTGGG+TGG + Chr3:101352704-101352723 MsG0380017846.01.T01:intron 35.0%
AATAAGGTCGGTGATATCGT+TGG - Chr3:101351967-101351986 None:intergenic 40.0%
ACTGATCAAAACTCTCCACT+TGG + Chr3:101352154-101352173 MsG0380017846.01.T01:CDS 40.0%
AGAATCCACATCCACTTCTT+AGG - Chr3:101352575-101352594 None:intergenic 40.0%
ATAAGGTCGGTGATATCGTT+GGG - Chr3:101351966-101351985 None:intergenic 40.0%
ATCAAAACTCTCCACTTGGA+TGG + Chr3:101352158-101352177 MsG0380017846.01.T01:CDS 40.0%
CGTCCTACAAGTGAATATGT+TGG - Chr3:101352066-101352085 None:intergenic 40.0%
CTAACTTAGAGGGTAAAAGC+TGG + Chr3:101352549-101352568 MsG0380017846.01.T01:CDS 40.0%
CTTATCCTTTCCCATTCTAG+AGG + Chr3:101352220-101352239 MsG0380017846.01.T01:CDS 40.0%
GGAGCTATTCTCTAACTTAG+AGG + Chr3:101352538-101352557 MsG0380017846.01.T01:CDS 40.0%
TCCTTTCTTCTTGCTTTCCA+AGG + Chr3:101352355-101352374 MsG0380017846.01.T01:CDS 40.0%
TTTCTGTAACATCTGGTGCT+TGG - Chr3:101352971-101352990 None:intergenic 40.0%
!! CAATTCCTCTAGAATGGGAA+AGG - Chr3:101352228-101352247 None:intergenic 40.0%
!!! ATCTTGTCTGCTGCTGTTTT+GGG - Chr3:101352284-101352303 None:intergenic 40.0%
AAATGGGGACTTGGACACAA+TGG - Chr3:101352499-101352518 None:intergenic 45.0%
AATGGGGACTTGGACACAAT+GGG - Chr3:101352498-101352517 None:intergenic 45.0%
ACGGAGTCTCAGTATAAAGC+TGG + Chr3:101352379-101352398 MsG0380017846.01.T01:CDS 45.0%
AGGCATTCCGGAACAATCTT+TGG - Chr3:101352808-101352827 None:intergenic 45.0%
GCCTTGGAAAGCAAGAAGAA+AGG - Chr3:101352359-101352378 None:intergenic 45.0%
GGCATTCCGGAACAATCTTT+GGG - Chr3:101352807-101352826 None:intergenic 45.0%
TCTTCTTGCTTTCCAAGGCA+CGG + Chr3:101352360-101352379 MsG0380017846.01.T01:CDS 45.0%
! GTAAAAGCTGGCCTAAGAAG+TGG + Chr3:101352561-101352580 MsG0380017846.01.T01:CDS 45.0%
! TGATGATGAGGTCATTTGGG+AGG + Chr3:101352780-101352799 MsG0380017846.01.T01:CDS 45.0%
!! GATCTTGTCTGCTGCTGTTT+TGG - Chr3:101352285-101352304 None:intergenic 45.0%
!!! AAGTTTTGAGCCGAGAGGAA+AGG - Chr3:101352828-101352847 None:intergenic 45.0%
ATGGGGACTTGGACACAATG+GGG - Chr3:101352497-101352516 None:intergenic 50.0%
GGAGGACCCAAAGATTGTTC+CGG + Chr3:101352798-101352817 MsG0380017846.01.T01:CDS 50.0%
TATACTGAGACTCCGTGCCT+TGG - Chr3:101352375-101352394 None:intergenic 50.0%
TTCCGGAATGCCTTTCCTCT+CGG + Chr3:101352815-101352834 MsG0380017846.01.T01:CDS 50.0%
!!! CAAGCAAGTTTTGAGCCGAG+AGG - Chr3:101352833-101352852 None:intergenic 50.0%
!!! TCTGCTGCTGTTTTGGGAAC+AGG - Chr3:101352278-101352297 None:intergenic 50.0%
GGTCGGTGATATCGTTGGGT+TGG - Chr3:101351962-101351981 None:intergenic 55.0%
! GCTGGCCTAAGAAGTGGATG+TGG + Chr3:101352567-101352586 MsG0380017846.01.T01:CDS 55.0%
!! AGCCGAGAGGAAAGGCATTC+CGG - Chr3:101352820-101352839 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 101351894 101353032 101351894 ID=MsG0380017846.01;Name=MsG0380017846.01
Chr3 mRNA 101351894 101353032 101351894 ID=MsG0380017846.01.T01;Parent=MsG0380017846.01;Name=MsG0380017846.01.T01;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|3|0|315
Chr3 exon 101351894 101352400 101351894 ID=MsG0380017846.01.T01:exon:2894;Parent=MsG0380017846.01.T01
Chr3 exon 101352488 101352643 101352488 ID=MsG0380017846.01.T01:exon:2895;Parent=MsG0380017846.01.T01
Chr3 exon 101352748 101353032 101352748 ID=MsG0380017846.01.T01:exon:2896;Parent=MsG0380017846.01.T01
Chr3 CDS 101351894 101352400 101351894 ID=MsG0380017846.01.T01:cds;Parent=MsG0380017846.01.T01
Chr3 CDS 101352488 101352643 101352488 ID=MsG0380017846.01.T01:cds;Parent=MsG0380017846.01.T01
Chr3 CDS 101352748 101353032 101352748 ID=MsG0380017846.01.T01:cds;Parent=MsG0380017846.01.T01
Gene Sequence

>MsG0380017846.01.T01

ATGCTATCGCGTGACAACACGCTGCCGATAAGATCATTCCGCTTCAAATATTGTCTTAGATACGACCAACCCAACGATATCACCGACCTTATTATTGCAGCAATACAAAGACGAACTGAAACCCTTGAACTTAACACGTTGTTTAATACTTTTGACATGAAATTAGCTTCCAACATATTCACTTGTAGGACGCTTACTGTTCTCAAAATAAAAGGCCTATCAATCATGGATGACATTCCTCAAATAAATAATAATATTTCACTGATCAAAACTCTCCACTTGGATGGTCTTTATTTACCAAATCATAGGCATATCATCAACTTGCTCTTATCCTTTCCCATTCTAGAGGAATTGCAAACAAATAATGTATATGTATTTAAACCTGTTCCCAAAACAGCAGCAGACAAGATCAAACGCTTACCCAATTTAGTGACAGCTAAGCTTTCTGATAGCAAAGCTATTCCTTTCTTCTTGCTTTCCAAGGCACGGAGTCTCAGTATAAAGCTGACATGGCCCCATTGTGTCCAAGTCCCCATTTTTTACAATCTAACTCAAATGGAGCTATTCTCTAACTTAGAGGGTAAAAGCTGGCCTAAGAAGTGGATGTGGATTCTTGAAATGCTTCAACACAGTCCAAAGCTTCAACATCTTATCATTCAAGAGGAGATTGAAAATAGGATAGAGAATGGAAATGATGATGATGAGGTCATTTGGGAGGACCCAAAGATTGTTCCGGAATGCCTTTCCTCTCGGCTCAAAACTTGCTTGTATAAGAATTATAGAGGCAAAAGGTGCGAGCTTCAATTTGCAGAATATGTTATGCGCAGTTCAAAAGTATTAAGTAACATGACAATTCACAGTGCTTATTCCATAGATTTAAATGCCAAGCACCAGATGTTACAGAAATTATCTCTGTATCCAAGGGGATGTAAACTTATATTTGAATGA
Protein sequence

>MsG0380017846.01.T01

MLSRDNTLPIRSFRFKYCLRYDQPNDITDLIIAAIQRRTETLELNTLFNTFDMKLASNIFTCRTLTVLKIKGLSIMDDIPQINNNISLIKTLHLDGLYLPNHRHIINLLLSFPILEELQTNNVYVFKPVPKTAADKIKRLPNLVTAKLSDSKAIPFFLLSKARSLSIKLTWPHCVQVPIFYNLTQMELFSNLEGKSWPKKWMWILEMLQHSPKLQHLIIQEEIENRIENGNDDDEVIWEDPKIVPECLSSRLKTCLYKNYRGKRCELQFAEYVMRSSKVLSNMTIHSAYSIDLNAKHQMLQKLSLYPRGCKLIFE*