AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021308.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021308.01.T01 MTR_4g071230 96.911 259 8 0 19 277 224 482 0.0 516
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021308.01.T01 AT2G21370 74.319 257 66 0 19 275 126 382 9.39e-142 404
MsG0480021308.01.T01 AT2G21370 74.031 258 67 0 18 275 218 475 1.96e-140 404
MsG0480021308.01.T01 AT2G21370 76.562 192 45 0 19 210 126 317 9.57e-107 312
MsG0480021308.01.T01 AT2G21370 76.562 192 45 0 19 210 219 410 1.19e-105 313

Find 60 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATACTTGCATGGAATTT+TGG 0.172318 4:+56571113 MsG0480021308.01.T01:CDS
CTTATTAACTACAATTAATT+AGG 0.186545 4:+56572143 MsG0480021308.01.T01:three_prime_UTR
AACTCCAATTGCTTGTTTAA+AGG 0.241909 4:+56568372 MsG0480021308.01.T01:CDS
GAGGAACTTAGAAATAAATT+TGG 0.271597 4:+56568394 MsG0480021308.01.T01:CDS
AGAATCGAGGATTCTCGTTT+TGG 0.275984 4:+56569499 MsG0480021308.01.T01:CDS
TGATTCTTAGGTTACATCAT+TGG 0.316523 4:+56569441 MsG0480021308.01.T01:intron
AAACAAGCAATTGGAGTTCC+AGG 0.322393 4:-56568367 None:intergenic
GTCATCGCCTTGATGATAAA+TGG 0.338306 4:+56569530 MsG0480021308.01.T01:CDS
CAGTACCTTGGAGCCAAATC+TGG 0.341368 4:-56569712 None:intergenic
GTTGGTGGTGCTTCAAATAC+TGG 0.348663 4:+56569556 MsG0480021308.01.T01:CDS
GGAAATCTTTCACCAGCTTT+TGG 0.354679 4:-56569679 None:intergenic
GATTCTTAGGTTACATCATT+GGG 0.360067 4:+56569442 MsG0480021308.01.T01:intron
TCCTCCTTTAAACAAGCAAT+TGG 0.368678 4:-56568376 None:intergenic
TCCGGTTGCAGATCCAGATT+TGG 0.369397 4:+56569699 MsG0480021308.01.T01:CDS
GACGGTAAAAGATGAGAATA+TGG 0.373140 4:-56568334 None:intergenic
TGGCAGAGGATAGTAGTCTA+AGG 0.378260 4:-56569659 None:intergenic
AAAAGCTGGTGAAAGATTTC+CGG 0.379132 4:+56569681 MsG0480021308.01.T01:CDS
GATGGATATGAGTCCACTTC+AGG 0.389322 4:-56568295 None:intergenic
TGCATACGGAACTGCATTGT+TGG 0.411658 4:+56571963 MsG0480021308.01.T01:CDS
AGCTATACTGTCAGTGGTTC+CGG 0.412191 4:-56568973 None:intergenic
TTCCGTATGCAGCTTCTGTT+TGG 0.420105 4:-56571951 None:intergenic
TAGTTAATAAGTAGTTAAGT+TGG 0.421232 4:-56572131 None:intergenic
GGAATCCATTGCACGTATAG+AGG 0.422783 4:+56571134 MsG0480021308.01.T01:CDS
TTACCGTCCGTTCTTGCACC+TGG 0.429144 4:+56568349 MsG0480021308.01.T01:CDS
AACTGCATTGTTGGCAATGA+AGG 0.435765 4:+56571972 MsG0480021308.01.T01:CDS
CTTGATGATAAATGGCTTGT+TGG 0.440900 4:+56569538 MsG0480021308.01.T01:CDS
GCCAAATCTGGATCTGCAAC+CGG 0.465717 4:-56569700 None:intergenic
ATCTATTAGATACGATATCT+AGG 0.480531 4:-56572075 None:intergenic
TATGGGTTGCTAAAGGATCT+AGG 0.488772 4:+56571823 MsG0480021308.01.T01:CDS
TGATGCATTTGCCCTTAAGT+TGG 0.497875 4:-56572018 None:intergenic
TACTATCCTCTGCCAAAAGC+TGG 0.504038 4:+56569667 MsG0480021308.01.T01:CDS
GATGATAAATGGCTTGTTGG+TGG 0.509846 4:+56569541 MsG0480021308.01.T01:CDS
GTTTGGTTTGCACGACTCAC+AGG 0.521003 4:-56571934 None:intergenic
TCTTACCTCTATACGTGCAA+TGG 0.527339 4:-56571139 None:intergenic
TCCAATTGCTTGTTTAAAGG+AGG 0.535092 4:+56568375 MsG0480021308.01.T01:CDS
CTCTGTTGCGATATCCGAGT+TGG 0.537347 4:+56568227 MsG0480021308.01.T01:CDS
AAGATACGAGAAAGGGTGCT+TGG 0.539627 4:+56571907 MsG0480021308.01.T01:CDS
GCAGCTCGTGCTACTCAACC+TGG 0.545958 4:+56569005 MsG0480021308.01.T01:CDS
TGGAGTTCCAGGTGCAAGAA+CGG 0.546664 4:-56568356 None:intergenic
GGTTGAGAGACTAGCCATGA+TGG 0.547884 4:-56568313 None:intergenic
CAGTTTCTCTAGTTGATCAT+CGG 0.550710 4:-56569605 None:intergenic
AAAGGGATATGGGTTGCTAA+AGG 0.551626 4:+56571816 MsG0480021308.01.T01:CDS
CAACAAGCCATTTATCATCA+AGG 0.552580 4:-56569537 None:intergenic
AGTGGACAAAGATACGAGAA+AGG 0.554823 4:+56571899 MsG0480021308.01.T01:CDS
CAGATCCAGATTTGGCTCCA+AGG 0.557605 4:+56569707 MsG0480021308.01.T01:CDS
AATGATGTTGAATACTTGCA+TGG 0.562603 4:+56571105 MsG0480021308.01.T01:CDS
AAGTGGACTCATATCCATCA+TGG 0.572768 4:+56568299 MsG0480021308.01.T01:CDS
AAGGAGTGTGTTGTATGCAC+CGG 0.573060 4:+56568954 MsG0480021308.01.T01:CDS
AACCAAACAGAAGCTGCATA+CGG 0.586418 4:+56571949 MsG0480021308.01.T01:CDS
GTCTAAGGAAGATATTTGTG+AGG 0.598899 4:-56569644 None:intergenic
TGTGAAAACTTGATCCACTA+CGG 0.615420 4:-56571851 None:intergenic
TCTAAGGAAGATATTTGTGA+GGG 0.615510 4:-56569643 None:intergenic
GGATCTAGGTGCAACCGTAG+TGG 0.620019 4:+56571837 MsG0480021308.01.T01:CDS
AAACGCAGCTATACTGTCAG+TGG 0.632976 4:-56568979 None:intergenic
ACTGCATTGTTGGCAATGAA+GGG 0.646066 4:+56571973 MsG0480021308.01.T01:CDS
GTGGACAAAGATACGAGAAA+GGG 0.650371 4:+56571900 MsG0480021308.01.T01:CDS
GTTCCAGGTGCAAGAACGGA+CGG 0.651034 4:-56568352 None:intergenic
ATTAAGCAACTCAAGAATCG+AGG 0.655962 4:+56569486 MsG0480021308.01.T01:CDS
GGTTGGGTATGATCCTGAAG+TGG 0.669877 4:+56568282 MsG0480021308.01.T01:CDS
GGTGGTGCTTCAAATACTGG+AGG 0.715567 4:+56569559 MsG0480021308.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTAGATTTATTTTAATA+CGG + Chr4:56570008-56570027 MsG0480021308.01.T01:intron 10.0%
!! AATAAAAAACTATTATTGAC+AGG - Chr4:56570055-56570074 None:intergenic 15.0%
!! ATTAAATCTGATTCTTTATA+TGG - Chr4:56570907-56570926 None:intergenic 15.0%
!! CATGAATAAATAATTAAAGA+AGG - Chr4:56569059-56569078 None:intergenic 15.0%
!! CTTATTAACTACAATTAATT+AGG + Chr4:56572143-56572162 MsG0480021308.01.T01:three_prime_UTR 15.0%
!! TATACAAGCTAATATTATAA+GGG - Chr4:56569790-56569809 None:intergenic 15.0%
!! TGTAAAAAAAAAAAATGAGT+TGG - Chr4:56571702-56571721 None:intergenic 15.0%
!! TTTATAAAATTAACTCACTT+GGG + Chr4:56569816-56569835 MsG0480021308.01.T01:intron 15.0%
!!! AAATTAAGATTTTCAAAAGA+TGG + Chr4:56569102-56569121 MsG0480021308.01.T01:intron 15.0%
!!! AATAGTATTCTAAAAACAAA+AGG - Chr4:56570078-56570097 None:intergenic 15.0%
!!! AATTTTACTTCATATAATGA+TGG - Chr4:56571189-56571208 None:intergenic 15.0%
!!! AGAGCATTTAAATTATATTT+TGG - Chr4:56569263-56569282 None:intergenic 15.0%
!!! ATCTAGATTTATTTTAATAC+GGG + Chr4:56570009-56570028 MsG0480021308.01.T01:intron 15.0%
!! AATAAATATACTCCAATGTA+AGG - Chr4:56570690-56570709 None:intergenic 20.0%
!! AATATAATTTAAATGCTCTG+TGG + Chr4:56569264-56569283 MsG0480021308.01.T01:intron 20.0%
!! ACTGTATTTATAATAAGATC+AGG + Chr4:56569165-56569184 MsG0480021308.01.T01:intron 20.0%
!! AGTAGTAATAAAAATTAGGA+TGG + Chr4:56572048-56572067 MsG0480021308.01.T01:three_prime_UTR 20.0%
!! ATCTTATTATAAATACAGTG+TGG - Chr4:56569164-56569183 None:intergenic 20.0%
!! CTATACAAGCTAATATTATA+AGG - Chr4:56569791-56569810 None:intergenic 20.0%
!! CTTATTAATTCAAAACCTTA+AGG + Chr4:56569351-56569370 MsG0480021308.01.T01:intron 20.0%
!! CTTTATAAAATTAACTCACT+TGG + Chr4:56569815-56569834 MsG0480021308.01.T01:intron 20.0%
!! GAAATTGAAAATCATATACA+CGG + Chr4:56568908-56568927 MsG0480021308.01.T01:intron 20.0%
!! TAAAAAGTTTATATGTGAGT+TGG - Chr4:56568581-56568600 None:intergenic 20.0%
!! TAAAGAATCAGATTTAATGT+TGG + Chr4:56570909-56570928 MsG0480021308.01.T01:intron 20.0%
!! TACATTGGAGTATATTTATT+AGG + Chr4:56570690-56570709 MsG0480021308.01.T01:intron 20.0%
!! TAGTTAATAAGTAGTTAAGT+TGG - Chr4:56572134-56572153 None:intergenic 20.0%
!! TCCAATAAAGTTTATGAAAA+TGG - Chr4:56571408-56571427 None:intergenic 20.0%
!! TGCAAAACATAAAAAAATTG+TGG - Chr4:56568262-56568281 None:intergenic 20.0%
!! TTATTTATTCATGATCTGTT+AGG + Chr4:56569066-56569085 MsG0480021308.01.T01:intron 20.0%
!! TTGTAGATTTAATGAAATAC+CGG - Chr4:56570107-56570126 None:intergenic 20.0%
!!! ACAATTTTTTTATGTTTTGC+AGG + Chr4:56568261-56568280 MsG0480021308.01.T01:CDS 20.0%
!!! ATTTATTAGGAGCTTTAAAA+AGG + Chr4:56570640-56570659 MsG0480021308.01.T01:intron 20.0%
!!! CTACTACTATTTTAGAATTT+AGG + Chr4:56570306-56570325 MsG0480021308.01.T01:intron 20.0%
!!! GTGAGTTAATTTTATAAAGA+AGG - Chr4:56569814-56569833 None:intergenic 20.0%
!!! TATTTCCTTTTCTTTCTAAA+AGG - Chr4:56570787-56570806 None:intergenic 20.0%
!!! TATTTTGCTCTTACATTTTT+TGG + Chr4:56571734-56571753 MsG0480021308.01.T01:intron 20.0%
!!! TGAGTTGAACAATAAATTTA+AGG - Chr4:56571593-56571612 None:intergenic 20.0%
!!! TTAGAATACTATTTTTTCTC+CGG + Chr4:56570085-56570104 MsG0480021308.01.T01:intron 20.0%
!!! TTATTTTGCATAATGACTAA+TGG + Chr4:56571044-56571063 MsG0480021308.01.T01:intron 20.0%
! AAAATAAAAAGAGTCTTGGT+TGG - Chr4:56571031-56571050 None:intergenic 25.0%
! AAGCATTATCCCTATAAAAT+GGG - Chr4:56568650-56568669 None:intergenic 25.0%
! ACATTATGAGAAACAAAACA+AGG - Chr4:56569420-56569439 None:intergenic 25.0%
! AGAAAAGGACAGTATTTATT+AGG + Chr4:56570627-56570646 MsG0480021308.01.T01:intron 25.0%
! AGGGATAATGCTTATTAATA+TGG + Chr4:56568657-56568676 MsG0480021308.01.T01:intron 25.0%
! AGTATTTCTTAACTACCTAA+CGG - Chr4:56570590-56570609 None:intergenic 25.0%
! ATAAGTTATGTGAGACTATT+TGG - Chr4:56571490-56571509 None:intergenic 25.0%
! ATCTACAAATCATCATGTTA+AGG + Chr4:56570119-56570138 MsG0480021308.01.T01:intron 25.0%
! ATCTATTAGATACGATATCT+AGG - Chr4:56572078-56572097 None:intergenic 25.0%
! ATGCAAAATAAAAAGAGTCT+TGG - Chr4:56571035-56571054 None:intergenic 25.0%
! CAAAATTCTAAACTAAGCAT+TGG - Chr4:56570232-56570251 None:intergenic 25.0%
! CAAGAACAAACTTGAATATA+CGG - Chr4:56570462-56570481 None:intergenic 25.0%
! CCATAGCAATCATATATATT+AGG - Chr4:56569206-56569225 None:intergenic 25.0%
! CCTAATATATATGATTGCTA+TGG + Chr4:56569203-56569222 MsG0480021308.01.T01:intron 25.0%
! GAAAGAAGAATATTGAGATA+AGG - Chr4:56568714-56568733 None:intergenic 25.0%
! GAAATAAAAAATGTCCCAAA+AGG + Chr4:56570801-56570820 MsG0480021308.01.T01:intron 25.0%
! GAGGAACTTAGAAATAAATT+TGG + Chr4:56568394-56568413 MsG0480021308.01.T01:CDS 25.0%
! GATATCTTCAACAAAAGAAA+AGG + Chr4:56570612-56570631 MsG0480021308.01.T01:intron 25.0%
! GTATTTATAATAAGATCAGG+AGG + Chr4:56569168-56569187 MsG0480021308.01.T01:intron 25.0%
! TAAGCATTATCCCTATAAAA+TGG - Chr4:56568651-56568670 None:intergenic 25.0%
! TAAGTTATGTGAGACTATTT+GGG - Chr4:56571489-56571508 None:intergenic 25.0%
! TCGCAGTAGTAATAAAAATT+AGG + Chr4:56572044-56572063 MsG0480021308.01.T01:three_prime_UTR 25.0%
! TCTCAATATTCTTCTTTCTT+TGG + Chr4:56568716-56568735 MsG0480021308.01.T01:intron 25.0%
! TCTCATAATGTTTGATTCTT+AGG + Chr4:56569429-56569448 MsG0480021308.01.T01:intron 25.0%
!! AAATGTCAAATAGTCCTTTT+GGG - Chr4:56570818-56570837 None:intergenic 25.0%
!! AAGTATTCAACATCATTTTC+TGG - Chr4:56571102-56571121 None:intergenic 25.0%
!! AATATTTTGTGACCAACTTA+AGG + Chr4:56572006-56572025 MsG0480021308.01.T01:exon 25.0%
!! ATATTTTGTGACCAACTTAA+GGG + Chr4:56572007-56572026 MsG0480021308.01.T01:exon 25.0%
!! CTCTTGAAATATGGTATTTT+AGG + Chr4:56571792-56571811 MsG0480021308.01.T01:intron 25.0%
!!! AAATATGGTATTTTAGGCAA+AGG + Chr4:56571798-56571817 MsG0480021308.01.T01:intron 25.0%
!!! AAATTATATTTTGGTAGACC+AGG - Chr4:56569254-56569273 None:intergenic 25.0%
!!! AATATGGTATTTTAGGCAAA+GGG + Chr4:56571799-56571818 MsG0480021308.01.T01:intron 25.0%
!!! ACTAATGGAATTTGATTTTC+TGG + Chr4:56571059-56571078 MsG0480021308.01.T01:intron 25.0%
!!! ATTAGGAGCTTTAAAATCAT+TGG + Chr4:56570644-56570663 MsG0480021308.01.T01:intron 25.0%
!!! CAAAGATTTTAACCAAGTTA+AGG - Chr4:56568881-56568900 None:intergenic 25.0%
!!! CAATGCTTAGTTTAGAATTT+TGG + Chr4:56570230-56570249 MsG0480021308.01.T01:intron 25.0%
!!! CTAATGGAATTTGATTTTCT+GGG + Chr4:56571060-56571079 MsG0480021308.01.T01:intron 25.0%
!!! GCCATTTTCATAAACTTTAT+TGG + Chr4:56571404-56571423 MsG0480021308.01.T01:intron 25.0%
!!! TGTTTTCAGCTTATTTTCAT+TGG - Chr4:56571434-56571453 None:intergenic 25.0%
!!! TTTTTTATGTTTTGCAGGTT+GGG + Chr4:56568266-56568285 MsG0480021308.01.T01:CDS 25.0%
!!! TTTTTTTAAAACTCGGTATC+CGG - Chr4:56569983-56570002 None:intergenic 25.0%
!!! TTTTTTTATGTTTTGCAGGT+TGG + Chr4:56568265-56568284 MsG0480021308.01.T01:CDS 25.0%
AACAACTATATTAAGCACCA+CGG + Chr4:56568510-56568529 MsG0480021308.01.T01:intron 30.0%
AACTCCAAATTCTAACTTCA+TGG - Chr4:56571546-56571565 None:intergenic 30.0%
AACTCCAATTGCTTGTTTAA+AGG + Chr4:56568372-56568391 MsG0480021308.01.T01:CDS 30.0%
AAGTGTTAAAAGTTCCACAT+TGG - Chr4:56570417-56570436 None:intergenic 30.0%
AATGATGTTGAATACTTGCA+TGG + Chr4:56571105-56571124 MsG0480021308.01.T01:CDS 30.0%
AATTAATAAGCACCAACCAT+AGG - Chr4:56569341-56569360 None:intergenic 30.0%
ACAGATAACAGAACCAAATT+TGG - Chr4:56570958-56570977 None:intergenic 30.0%
ACTCCAAATTCTAACTTCAT+GGG - Chr4:56571545-56571564 None:intergenic 30.0%
ACTTCATGATTTCAACAATG+TGG - Chr4:56570187-56570206 None:intergenic 30.0%
AGCATTATCCCTATAAAATG+GGG - Chr4:56568649-56568668 None:intergenic 30.0%
CATTTCTTCTTCCAAAAACT+CGG - Chr4:56570873-56570892 None:intergenic 30.0%
CTCACTTATAAACACATTGT+TGG + Chr4:56570379-56570398 MsG0480021308.01.T01:intron 30.0%
CTTCATGATTTCAACAATGT+GGG - Chr4:56570186-56570205 None:intergenic 30.0%
GAACTCATGAAAACAACTTA+CGG - Chr4:56571465-56571484 None:intergenic 30.0%
GATTCTTAGGTTACATCATT+GGG + Chr4:56569442-56569461 MsG0480021308.01.T01:intron 30.0%
GCTTAATATAGTTGTTTGGA+AGG - Chr4:56568506-56568525 None:intergenic 30.0%
GGATTATATATCTACCAATG+TGG + Chr4:56570400-56570419 MsG0480021308.01.T01:intron 30.0%
TAAAATTAACTCACTTGGGT+TGG + Chr4:56569820-56569839 MsG0480021308.01.T01:intron 30.0%
TAAGGTTGCACTATTCAAAT+TGG - Chr4:56568696-56568715 None:intergenic 30.0%
TATATATTGCTGTGTTGCAA+TGG + Chr4:56568844-56568863 MsG0480021308.01.T01:intron 30.0%
TCAAACAAGTCAATCTAAAC+AGG + Chr4:56571519-56571538 MsG0480021308.01.T01:intron 30.0%
TCTAAGGAAGATATTTGTGA+GGG - Chr4:56569646-56569665 None:intergenic 30.0%
TGATTCTTAGGTTACATCAT+TGG + Chr4:56569441-56569460 MsG0480021308.01.T01:intron 30.0%
TGGTGCTTAATATAGTTGTT+TGG - Chr4:56568510-56568529 None:intergenic 30.0%
TTAAGTTAGAAACCAGTTCT+TGG - Chr4:56571255-56571274 None:intergenic 30.0%
TTCCTTGTCTTTAGTACTTA+GGG + Chr4:56570836-56570855 MsG0480021308.01.T01:intron 30.0%
TTCTAACTTAAGGCTATGTT+TGG + Chr4:56571264-56571283 MsG0480021308.01.T01:intron 30.0%
TTTCCTTGTCTTTAGTACTT+AGG + Chr4:56570835-56570854 MsG0480021308.01.T01:intron 30.0%
! AAGAACTGGTTTCTAACTTA+AGG + Chr4:56571254-56571273 MsG0480021308.01.T01:intron 30.0%
! AGTTTGCTTTGATTGTGTTA+TGG - Chr4:56570990-56571009 None:intergenic 30.0%
! ATTCAAGTTTGTTCTTGATG+AGG + Chr4:56570465-56570484 MsG0480021308.01.T01:intron 30.0%
! GAAATGTCAAATAGTCCTTT+TGG - Chr4:56570819-56570838 None:intergenic 30.0%
! TGAATACTTGCATGGAATTT+TGG + Chr4:56571113-56571132 MsG0480021308.01.T01:CDS 30.0%
! TGTGGATAAATTTTCCAACT+CGG - Chr4:56568244-56568263 None:intergenic 30.0%
! TTGACTTGAGTGACAATATT+AGG + Chr4:56570539-56570558 MsG0480021308.01.T01:intron 30.0%
! TTGGTTATTTCAACAATGTG+AGG - Chr4:56570213-56570232 None:intergenic 30.0%
! TTGTGCATCAATTTTACTTG+TGG - Chr4:56568802-56568821 None:intergenic 30.0%
! TTTATATGTGAGTTGGCTAT+CGG - Chr4:56568574-56568593 None:intergenic 30.0%
!! AATGGCCTTTTAGAAAGAAA+AGG + Chr4:56570779-56570798 MsG0480021308.01.T01:intron 30.0%
!! ATAAGCTTTGGAGCTTATAT+AGG + Chr4:56569301-56569320 MsG0480021308.01.T01:intron 30.0%
!! ATCTTAATTTGTCTATCACG+AGG - Chr4:56569092-56569111 None:intergenic 30.0%
!! ATGTTGGTTCATTTATGTTC+AGG + Chr4:56570925-56570944 MsG0480021308.01.T01:intron 30.0%
!! ATTGATTTTGTTCCAAGAAC+TGG + Chr4:56571240-56571259 MsG0480021308.01.T01:intron 30.0%
!! CTCATAAGTCAGTTTTGTAA+GGG - Chr4:56570347-56570366 None:intergenic 30.0%
!! GCTTAGTTTAGAATTTTGGT+TGG + Chr4:56570234-56570253 MsG0480021308.01.T01:intron 30.0%
!! TATTTTAGGCAAAGGGATAT+GGG + Chr4:56571806-56571825 MsG0480021308.01.T01:intron 30.0%
!! TCTCATAAGTCAGTTTTGTA+AGG - Chr4:56570348-56570367 None:intergenic 30.0%
!! TCTTTCTAAAAGGCCATTTT+GGG - Chr4:56570777-56570796 None:intergenic 30.0%
!! TGTTGGTTCATTTATGTTCA+GGG + Chr4:56570926-56570945 MsG0480021308.01.T01:intron 30.0%
!! TTCTTTCTAAAAGGCCATTT+TGG - Chr4:56570778-56570797 None:intergenic 30.0%
!!! TATCCTTTCAGGTTTTCAAA+AGG + Chr4:56568935-56568954 MsG0480021308.01.T01:intron 30.0%
AAAAGCTGGTGAAAGATTTC+CGG + Chr4:56569681-56569700 MsG0480021308.01.T01:CDS 35.0%
ACAACAAGATGTCCAGAATT+GGG - Chr4:56570279-56570298 None:intergenic 35.0%
ATATAACGTGAGATGTCAAG+AGG - Chr4:56569875-56569894 None:intergenic 35.0%
ATCTCACGTTATATTCTCCT+TGG + Chr4:56569881-56569900 MsG0480021308.01.T01:intron 35.0%
ATTAAGCAACTCAAGAATCG+AGG + Chr4:56569486-56569505 MsG0480021308.01.T01:CDS 35.0%
ATTCATCCACTAGATCCTAA+TGG + Chr4:56571763-56571782 MsG0480021308.01.T01:intron 35.0%
CAACAAGCCATTTATCATCA+AGG - Chr4:56569540-56569559 None:intergenic 35.0%
CACTGTATTTAAATGCATCC+TGG + Chr4:56569233-56569252 MsG0480021308.01.T01:intron 35.0%
CAGTTTCTCTAGTTGATCAT+CGG - Chr4:56569608-56569627 None:intergenic 35.0%
GACAGGATTTCAACTTCATT+TGG - Chr4:56570038-56570057 None:intergenic 35.0%
GACGGTAAAAGATGAGAATA+TGG - Chr4:56568337-56568356 None:intergenic 35.0%
GCATAAAAAGCTATCCACAA+TGG - Chr4:56569398-56569417 None:intergenic 35.0%
GGATGCATTTAAATACAGTG+TGG - Chr4:56569233-56569252 None:intergenic 35.0%
GTCTAAGGAAGATATTTGTG+AGG - Chr4:56569647-56569666 None:intergenic 35.0%
TACAACAAGATGTCCAGAAT+TGG - Chr4:56570280-56570299 None:intergenic 35.0%
TCATTTGGCAATCCTTACAT+TGG + Chr4:56570675-56570694 MsG0480021308.01.T01:intron 35.0%
TCCAATTGCTTGTTTAAAGG+AGG + Chr4:56568375-56568394 MsG0480021308.01.T01:CDS 35.0%
TCCTCCTTTAAACAAGCAAT+TGG - Chr4:56568379-56568398 None:intergenic 35.0%
TGGTAAGCACTCTTGAAATA+TGG + Chr4:56571783-56571802 MsG0480021308.01.T01:intron 35.0%
TGTGAAAACTTGATCCACTA+CGG - Chr4:56571854-56571873 None:intergenic 35.0%
TTATCCCTATAAAATGGGGT+TGG - Chr4:56568645-56568664 None:intergenic 35.0%
TTGCTTTGATTGTGTTATGG+TGG - Chr4:56570987-56571006 None:intergenic 35.0%
! AAGTTCCAACCCCATTTTAT+AGG + Chr4:56568637-56568656 MsG0480021308.01.T01:intron 35.0%
! AATTTTACTTGTGGCACAAC+TGG - Chr4:56568793-56568812 None:intergenic 35.0%
! AGTTCCAACCCCATTTTATA+GGG + Chr4:56568638-56568657 MsG0480021308.01.T01:intron 35.0%
! CAAAACTGACTTATGAGATG+AGG + Chr4:56570350-56570369 MsG0480021308.01.T01:intron 35.0%
! CAAGAAATTACAGCTTTTCC+AGG - Chr4:56569026-56569045 None:intergenic 35.0%
! CTTGATGATAAATGGCTTGT+TGG + Chr4:56569538-56569557 MsG0480021308.01.T01:CDS 35.0%
! GCATTGGATTTTCCTTAACT+TGG + Chr4:56568866-56568885 MsG0480021308.01.T01:intron 35.0%
! TCATTGGAGTACTTCTCATT+TGG + Chr4:56570660-56570679 MsG0480021308.01.T01:intron 35.0%
! TTATATGTGAGTTGGCTATC+GGG - Chr4:56568573-56568592 None:intergenic 35.0%
! TTCTGGACATCTTGTTGTAT+AGG + Chr4:56570281-56570300 MsG0480021308.01.T01:intron 35.0%
!! ACTCCTTTTGAAAACCTGAA+AGG - Chr4:56568941-56568960 None:intergenic 35.0%
!! AGGCTTTTAACTAACTGTGA+AGG - Chr4:56571573-56571592 None:intergenic 35.0%
!! GTATTTTAGGCAAAGGGATA+TGG + Chr4:56571805-56571824 MsG0480021308.01.T01:intron 35.0%
!! TTAGGAGCTTTAAAAAGGAC+AGG + Chr4:56570708-56570727 MsG0480021308.01.T01:intron 35.0%
!! TTTCAAGAGTGCTTACCATT+AGG - Chr4:56571781-56571800 None:intergenic 35.0%
AAACAAGCAATTGGAGTTCC+AGG - Chr4:56568370-56568389 None:intergenic 40.0%
AACCAAACAGAAGCTGCATA+CGG + Chr4:56571949-56571968 MsG0480021308.01.T01:CDS 40.0%
AACTGCATTGTTGGCAATGA+AGG + Chr4:56571972-56571991 MsG0480021308.01.T01:CDS 40.0%
AATGGATCCATTCAGTACCT+TGG - Chr4:56569727-56569746 None:intergenic 40.0%
ACTGCATTGTTGGCAATGAA+GGG + Chr4:56571973-56571992 MsG0480021308.01.T01:CDS 40.0%
AGCCCTAAGTACTAAAGACA+AGG - Chr4:56570841-56570860 None:intergenic 40.0%
AGGCCCATGAAGTTAGAATT+TGG + Chr4:56571539-56571558 MsG0480021308.01.T01:intron 40.0%
AGTGGACAAAGATACGAGAA+AGG + Chr4:56571899-56571918 MsG0480021308.01.T01:CDS 40.0%
ATCTGTACCAAGCAACACTT+TGG + Chr4:56568456-56568475 MsG0480021308.01.T01:intron 40.0%
ATGTCCAGAATTGGGCATAA+GGG - Chr4:56570271-56570290 None:intergenic 40.0%
CAATGTGGGAACTTATGCTT+TGG - Chr4:56570172-56570191 None:intergenic 40.0%
CCACAATGGTGAATCTAAAG+AGG - Chr4:56569384-56569403 None:intergenic 40.0%
CCTCTTTAGATTCACCATTG+TGG + Chr4:56569381-56569400 MsG0480021308.01.T01:intron 40.0%
CCTTAACAAGTGTCCCAAAA+TGG + Chr4:56570761-56570780 MsG0480021308.01.T01:intron 40.0%
CTTAAGACCGACTAATCCAA+GGG - Chr4:56569960-56569979 None:intergenic 40.0%
GCACAAGTAACACAACTTTC+TGG + Chr4:56568816-56568835 MsG0480021308.01.T01:intron 40.0%
GTGGACAAAGATACGAGAAA+GGG + Chr4:56571900-56571919 MsG0480021308.01.T01:CDS 40.0%
TCTGTACCAAGCAACACTTT+GGG + Chr4:56568457-56568476 MsG0480021308.01.T01:intron 40.0%
TCTTACCTCTATACGTGCAA+TGG - Chr4:56571142-56571161 None:intergenic 40.0%
TGATGCATTTGCCCTTAAGT+TGG - Chr4:56572021-56572040 None:intergenic 40.0%
TGCTTACCATTAGGATCTAG+TGG - Chr4:56571772-56571791 None:intergenic 40.0%
TTCAGGGACAAAGCCAAATT+TGG + Chr4:56570942-56570961 MsG0480021308.01.T01:intron 40.0%
TTCTCATGGGAGATAAGCTT+TGG + Chr4:56569289-56569308 MsG0480021308.01.T01:intron 40.0%
TTTCTTGAGAAGTCACCGTT+AGG + Chr4:56570572-56570591 MsG0480021308.01.T01:intron 40.0%
! AAAGACTAGCCCAACGAAAT+TGG - Chr4:56569909-56569928 None:intergenic 40.0%
! AAAGGGATATGGGTTGCTAA+AGG + Chr4:56571816-56571835 MsG0480021308.01.T01:CDS 40.0%
! AAGTGGACTCATATCCATCA+TGG + Chr4:56568299-56568318 MsG0480021308.01.T01:CDS 40.0%
! AATCGAGGATTCTCGTTTTG+GGG + Chr4:56569501-56569520 MsG0480021308.01.T01:CDS 40.0%
! AGAATCGAGGATTCTCGTTT+TGG + Chr4:56569499-56569518 MsG0480021308.01.T01:CDS 40.0%
! GAATCGAGGATTCTCGTTTT+GGG + Chr4:56569500-56569519 MsG0480021308.01.T01:CDS 40.0%
! GGAAATCTTTCACCAGCTTT+TGG - Chr4:56569682-56569701 None:intergenic 40.0%
! GTCATCGCCTTGATGATAAA+TGG + Chr4:56569530-56569549 MsG0480021308.01.T01:CDS 40.0%
! TATATGTGAGTTGGCTATCG+GGG - Chr4:56568572-56568591 None:intergenic 40.0%
! TATGGGTTGCTAAAGGATCT+AGG + Chr4:56571823-56571842 MsG0480021308.01.T01:CDS 40.0%
! TCAACATCATTTTCTGGACG+TGG - Chr4:56571096-56571115 None:intergenic 40.0%
!! ATTGGATCCCTTGGATTAGT+CGG + Chr4:56569950-56569969 MsG0480021308.01.T01:intron 40.0%
!! GATGATAAATGGCTTGTTGG+TGG + Chr4:56569541-56569560 MsG0480021308.01.T01:CDS 40.0%
!! TATTACCCCAAAGTGTTGCT+TGG - Chr4:56568466-56568485 None:intergenic 40.0%
!! TGGAATTTGATTTTCTGGGC+AGG + Chr4:56571064-56571083 MsG0480021308.01.T01:intron 40.0%
!!! CCATTTTGGGACACTTGTTA+AGG - Chr4:56570764-56570783 None:intergenic 40.0%
AAACGCAGCTATACTGTCAG+TGG - Chr4:56568982-56569001 None:intergenic 45.0%
AATGCTCTGTGGTCTTCTCA+TGG + Chr4:56569275-56569294 MsG0480021308.01.T01:intron 45.0%
AGCTATACTGTCAGTGGTTC+CGG - Chr4:56568976-56568995 None:intergenic 45.0%
ATGCTCTGTGGTCTTCTCAT+GGG + Chr4:56569276-56569295 MsG0480021308.01.T01:intron 45.0%
CCAACCATAGGAACGAACAA+AGG - Chr4:56569329-56569348 None:intergenic 45.0%
CCTTTGTTCGTTCCTATGGT+TGG + Chr4:56569326-56569345 MsG0480021308.01.T01:intron 45.0%
CGTTCCAACAGAGAGCAAAA+TGG - Chr4:56569745-56569764 None:intergenic 45.0%
CTGTACCAAGCAACACTTTG+GGG + Chr4:56568458-56568477 MsG0480021308.01.T01:intron 45.0%
CTTGTGGCACAACTGGAATT+TGG - Chr4:56568786-56568805 None:intergenic 45.0%
GAGGAGCGAAAAATGAGAAG+TGG + Chr4:56571881-56571900 MsG0480021308.01.T01:CDS 45.0%
GATGGATATGAGTCCACTTC+AGG - Chr4:56568298-56568317 None:intergenic 45.0%
GATGTCCAGAATTGGGCATA+AGG - Chr4:56570272-56570291 None:intergenic 45.0%
GCTTAAGACCGACTAATCCA+AGG - Chr4:56569961-56569980 None:intergenic 45.0%
GGAATCCATTGCACGTATAG+AGG + Chr4:56571134-56571153 MsG0480021308.01.T01:CDS 45.0%
TACACGGTGCATATCCTTTC+AGG + Chr4:56568924-56568943 MsG0480021308.01.T01:intron 45.0%
TACTATCCTCTGCCAAAAGC+TGG + Chr4:56569667-56569686 MsG0480021308.01.T01:CDS 45.0%
TCAACCCTTATGCCCAATTC+TGG + Chr4:56570264-56570283 MsG0480021308.01.T01:intron 45.0%
TCAAGTCTCAACGCTCAAGA+AGG - Chr4:56568749-56568768 None:intergenic 45.0%
TGCATACGGAACTGCATTGT+TGG + Chr4:56571963-56571982 MsG0480021308.01.T01:CDS 45.0%
TGGCAGAGGATAGTAGTCTA+AGG - Chr4:56569662-56569681 None:intergenic 45.0%
TGTGGGAACTTATGCTTTGG+AGG - Chr4:56570169-56570188 None:intergenic 45.0%
TTAACCTGCAAGTGGACGAT+GGG + Chr4:56569927-56569946 MsG0480021308.01.T01:intron 45.0%
TTCCGTATGCAGCTTCTGTT+TGG - Chr4:56571954-56571973 None:intergenic 45.0%
TTGCTGTGTTGCAATGGCAT+TGG + Chr4:56568850-56568869 MsG0480021308.01.T01:intron 45.0%
TTTAACCTGCAAGTGGACGA+TGG + Chr4:56569926-56569945 MsG0480021308.01.T01:intron 45.0%
! AAGGAGTGTGTTGTATGCAC+CGG + Chr4:56568954-56568973 MsG0480021308.01.T01:CDS 45.0%
! CTGATGACTGACCGAGTTTT+TGG + Chr4:56570859-56570878 MsG0480021308.01.T01:intron 45.0%
! GGATCCATTTTGCTCTCTGT+TGG + Chr4:56569738-56569757 MsG0480021308.01.T01:intron 45.0%
! GTGGATCAAGTTTTCACAGC+CGG + Chr4:56571856-56571875 MsG0480021308.01.T01:CDS 45.0%
! TTGGCATGATGATGTTGGCT+TGG + Chr4:56569839-56569858 MsG0480021308.01.T01:intron 45.0%
!! AAGATACGAGAAAGGGTGCT+TGG + Chr4:56571907-56571926 MsG0480021308.01.T01:CDS 45.0%
!! GCTAGTCTTTAACCTGCAAG+TGG + Chr4:56569919-56569938 MsG0480021308.01.T01:intron 45.0%
!! GGTGAATCTAAAGAGGTGCT+TGG - Chr4:56569377-56569396 None:intergenic 45.0%
!! GTTGGTGGTGCTTCAAATAC+TGG + Chr4:56569556-56569575 MsG0480021308.01.T01:CDS 45.0%
!! TAAAGAGGTGCTTGGCCTTA+AGG - Chr4:56569369-56569388 None:intergenic 45.0%
!! TCCTTGGTGCCAATTTCGTT+GGG + Chr4:56569897-56569916 MsG0480021308.01.T01:intron 45.0%
!! TGGATTAGTCGGTCTTAAGC+CGG + Chr4:56569961-56569980 MsG0480021308.01.T01:intron 45.0%
!! TGGCATGATGATGTTGGCTT+GGG + Chr4:56569840-56569859 MsG0480021308.01.T01:intron 45.0%
!! TTGGGTTGGCATGATGATGT+TGG + Chr4:56569834-56569853 MsG0480021308.01.T01:intron 45.0%
!! TTTGGCTCCAAGGTACTGAA+TGG + Chr4:56569717-56569736 MsG0480021308.01.T01:intron 45.0%
!!! TTTTTTTTTTTTTTAAAACT+CGG - Chr4:56569990-56570009 None:intergenic 5.0%
CAGTACCTTGGAGCCAAATC+TGG - Chr4:56569715-56569734 None:intergenic 50.0%
CTCTGTTGCGATATCCGAGT+TGG + Chr4:56568227-56568246 MsG0480021308.01.T01:CDS 50.0%
GCCAAATCTGGATCTGCAAC+CGG - Chr4:56569703-56569722 None:intergenic 50.0%
GCGTTGAGACTTGAGACACA+CGG + Chr4:56568755-56568774 MsG0480021308.01.T01:intron 50.0%
GGCTCCTTTGTTCGTTCCTA+TGG + Chr4:56569322-56569341 MsG0480021308.01.T01:intron 50.0%
GGTGGTGCTTCAAATACTGG+AGG + Chr4:56569559-56569578 MsG0480021308.01.T01:CDS 50.0%
GGTTGGGTATGATCCTGAAG+TGG + Chr4:56568282-56568301 MsG0480021308.01.T01:CDS 50.0%
TCCGGTTGCAGATCCAGATT+TGG + Chr4:56569699-56569718 MsG0480021308.01.T01:CDS 50.0%
TGGAGTTCCAGGTGCAAGAA+CGG - Chr4:56568359-56568378 None:intergenic 50.0%
! CAGATCCAGATTTGGCTCCA+AGG + Chr4:56569707-56569726 MsG0480021308.01.T01:CDS 50.0%
! CTTTCACCAGCTTTTGGCAG+AGG - Chr4:56569676-56569695 None:intergenic 50.0%
! GATCAAGTTTTCACAGCCGG+TGG + Chr4:56571859-56571878 MsG0480021308.01.T01:CDS 50.0%
! GGTTGAGAGACTAGCCATGA+TGG - Chr4:56568316-56568335 None:intergenic 50.0%
!! CTCATTTTTCGCTCCTCCAC+CGG - Chr4:56571878-56571897 None:intergenic 50.0%
!! CTCCTTGGTGCCAATTTCGT+TGG + Chr4:56569896-56569915 MsG0480021308.01.T01:intron 50.0%
!! GTTTGGTTTGCACGACTCAC+AGG - Chr4:56571937-56571956 None:intergenic 50.0%
CAATCCCATCGTCCACTTGC+AGG - Chr4:56569934-56569953 None:intergenic 55.0%
CTGCAAGTGGACGATGGGAT+TGG + Chr4:56569932-56569951 MsG0480021308.01.T01:intron 55.0%
GACGATGGGATTGGATCCCT+TGG + Chr4:56569941-56569960 MsG0480021308.01.T01:intron 55.0%
GCCCAACGAAATTGGCACCA+AGG - Chr4:56569901-56569920 None:intergenic 55.0%
GGATCTAGGTGCAACCGTAG+TGG + Chr4:56571837-56571856 MsG0480021308.01.T01:CDS 55.0%
GTTCCAGGTGCAAGAACGGA+CGG - Chr4:56568355-56568374 None:intergenic 55.0%
TTACCGTCCGTTCTTGCACC+TGG + Chr4:56568349-56568368 MsG0480021308.01.T01:CDS 55.0%
! CAAGTTTTCACAGCCGGTGG+AGG + Chr4:56571862-56571881 MsG0480021308.01.T01:CDS 55.0%
! GCAGCTCGTGCTACTCAACC+TGG + Chr4:56569005-56569024 MsG0480021308.01.T01:CDS 60.0%
CGCTCTCTGAGCCTTGAGCC+TGG + Chr4:56568537-56568556 MsG0480021308.01.T01:intron 65.0%
GTTGGCTATCGGGGCTCACC+AGG - Chr4:56568563-56568582 None:intergenic 65.0%
TCTGAGCCTTGAGCCTGGCC+TGG + Chr4:56568542-56568561 MsG0480021308.01.T01:intron 65.0%
CTATCGGGGCTCACCAGGCC+AGG - Chr4:56568558-56568577 None:intergenic 70.0%
GGCTCACCAGGCCAGGCTCA+AGG - Chr4:56568551-56568570 None:intergenic 70.0%
!! GGCTCAGAGAGCGCTGACCG+TGG - Chr4:56568530-56568549 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 56568223 56572280 56568223 ID=MsG0480021308.01;Name=MsG0480021308.01
Chr4 mRNA 56568223 56572280 56568223 ID=MsG0480021308.01.T01;Parent=MsG0480021308.01;Name=MsG0480021308.01.T01;_AED=0.49;_eAED=0.50;_QI=0|1|0.8|1|1|1|5|263|277
Chr4 exon 56568223 56568415 56568223 ID=MsG0480021308.01.T01:exon:6402;Parent=MsG0480021308.01.T01
Chr4 exon 56568946 56569034 56568946 ID=MsG0480021308.01.T01:exon:6403;Parent=MsG0480021308.01.T01
Chr4 exon 56569451 56569728 56569451 ID=MsG0480021308.01.T01:exon:6404;Parent=MsG0480021308.01.T01
Chr4 exon 56571086 56571155 56571086 ID=MsG0480021308.01.T01:exon:6405;Parent=MsG0480021308.01.T01
Chr4 exon 56571814 56572280 56571814 ID=MsG0480021308.01.T01:exon:6406;Parent=MsG0480021308.01.T01
Chr4 CDS 56568223 56568415 56568223 ID=MsG0480021308.01.T01:cds;Parent=MsG0480021308.01.T01
Chr4 CDS 56568946 56569034 56568946 ID=MsG0480021308.01.T01:cds;Parent=MsG0480021308.01.T01
Chr4 CDS 56569451 56569728 56569451 ID=MsG0480021308.01.T01:cds;Parent=MsG0480021308.01.T01
Chr4 CDS 56571086 56571155 56571086 ID=MsG0480021308.01.T01:cds;Parent=MsG0480021308.01.T01
Chr4 CDS 56571814 56572017 56571814 ID=MsG0480021308.01.T01:cds;Parent=MsG0480021308.01.T01
Chr4 three_prime_UTR 56572018 56572280 56572018 ID=MsG0480021308.01.T01:three_prime_utr;Parent=MsG0480021308.01.T01
Gene Sequence

>MsG0480021308.01.T01

ATGTCTCTGTTGCGATATCCGAGTTGGAAAATTTATCCACAATTTTTTTATGTTTTGCAGGTTGGGTATGATCCTGAAGTGGACTCATATCCATCATGGCTAGTCTCTCAACCATATTCTCATCTTTTACCGTCCGTTCTTGCACCTGGAACTCCAATTGCTTGTTTAAAGGAGGAACTTAGAAATAAATTTGGTTTTCAAAAGGAGTGTGTTGTATGCACCGGAACCACTGACAGTATAGCTGCGTTTCTTGCAGCTCGTGCTACTCAACCTGGAAAAGCTGTTACATCATTGGGTTCAACACTTGCTATTAAACTATTAAGCAACTCAAGAATCGAGGATTCTCGTTTTGGGGTGTATAGTCATCGCCTTGATGATAAATGGCTTGTTGGTGGTGCTTCAAATACTGGAGGAGTTGTTCTTAGACAGCTTTTCACCGATGATCAACTAGAGAAACTGAGTGAACAAATCAATCCCTCACAAATATCTTCCTTAGACTACTATCCTCTGCCAAAAGCTGGTGAAAGATTTCCGGTTGCAGATCCAGATTTGGCTCCAAGGCTACTTCCACGTCCAGAAAATGATGTTGAATACTTGCATGGAATTTTGGAATCCATTGCACGTATAGAGGCAAAGGGATATGGGTTGCTAAAGGATCTAGGTGCAACCGTAGTGGATCAAGTTTTCACAGCCGGTGGAGGAGCGAAAAATGAGAAGTGGACAAAGATACGAGAAAGGGTGCTTGGTTTACCTGTGAGTCGTGCAAACCAAACAGAAGCTGCATACGGAACTGCATTGTTGGCAATGAAGGGTGATCAACAAAATATTTTGTGA

Protein sequence

>MsG0480021308.01.T01

MSLLRYPSWKIYPQFFYVLQVGYDPEVDSYPSWLVSQPYSHLLPSVLAPGTPIACLKEELRNKFGFQKECVVCTGTTDSIAAFLAARATQPGKAVTSLGSTLAIKLLSNSRIEDSRFGVYSHRLDDKWLVGGASNTGGVVLRQLFTDDQLEKLSEQINPSQISSLDYYPLPKAGERFPVADPDLAPRLLPRPENDVEYLHGILESIARIEAKGYGLLKDLGATVVDQVFTAGGGAKNEKWTKIRERVLGLPVSRANQTEAAYGTALLAMKGDQQNIL*