AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023376.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023376.01.T01 MTR_2g066060 32.168 143 88 1 174 307 243 385 2.60e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023376.01.T01 AT2G21960 75.972 283 48 2 48 310 50 332 1.17e-148 421
MsG0480023376.01.T01 AT1G56180 32.414 145 89 1 174 309 240 384 2.15e-13 70.5

Find 76 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTGGCTTACCCATTT+TGG 0.102537 4:-84336927 MsG0480023376.01.T01:CDS
GAAGCTCTGGTTGTGAATTT+AGG 0.115841 4:+84339288 None:intergenic
CTTCGAGAGCTGACAACTTT+AGG 0.199826 4:-84338391 MsG0480023376.01.T01:CDS
GTCGATCCATGAAGCCTTAA+TGG 0.219380 4:-84336118 MsG0480023376.01.T01:CDS
ATTCTGGCTGGCCAGCTTCC+CGG 0.227667 4:-84338154 MsG0480023376.01.T01:CDS
ATCCAGTGAATATCCCAAAA+TGG 0.251435 4:+84336913 None:intergenic
TTCGAGAGCTGACAACTTTA+GGG 0.257197 4:-84338390 MsG0480023376.01.T01:CDS
AACTGGATTCTTGGGTATTC+TGG 0.263208 4:-84338170 MsG0480023376.01.T01:CDS
CTTGATCAACTGAGTGAAAT+TGG 0.263702 4:-84338940 MsG0480023376.01.T01:CDS
TTCTGGCTGGCCAGCTTCCC+GGG 0.284405 4:-84338153 MsG0480023376.01.T01:CDS
AAGCTCTGGTTGTGAATTTA+GGG 0.294762 4:+84339289 None:intergenic
TTGGGATATTCACTGGATAT+TGG 0.298796 4:-84336908 MsG0480023376.01.T01:CDS
TTCTTTGTACCATACTTGAT+TGG 0.309773 4:-84337298 MsG0480023376.01.T01:CDS
AGTATTTCCTTAGTGGTATT+GGG 0.320539 4:-84337274 MsG0480023376.01.T01:CDS
TGGCTGAGAACTCCATTTCT+TGG 0.327017 4:+84338912 None:intergenic
TTTACTGTGGTTGGAACAAC+TGG 0.327694 4:-84338187 MsG0480023376.01.T01:CDS
ATCTTTGCTGAGTTGTGGTT+TGG 0.340177 4:+84336330 None:intergenic
GGTTGGAACAACTGGATTCT+TGG 0.341417 4:-84338179 MsG0480023376.01.T01:CDS
TTTCTAGTTGCTTATCTGCT+TGG 0.354201 4:-84336941 MsG0480023376.01.T01:CDS
CTTTGCCATCGATGCCATTA+AGG 0.360946 4:+84336104 None:intergenic
AGCAACAAAATCTCACTAGA+TGG 0.367508 4:-84336306 MsG0480023376.01.T01:CDS
TTTGGTGGTGATGATGATTA+TGG 0.373375 4:+84339331 None:intergenic
GAGTATTTCCTTAGTGGTAT+TGG 0.376884 4:-84337275 MsG0480023376.01.T01:CDS
GGTTGATGTTGAAGCATGTT+TGG 0.383493 4:+84339313 None:intergenic
TCCTTAGTGGTATTGGGTAT+AGG 0.386228 4:-84337268 MsG0480023376.01.T01:CDS
GAAATACTCCCAATCAAGTA+TGG 0.386262 4:+84337289 None:intergenic
GATTGGGAGTATTTCCTTAG+TGG 0.396031 4:-84337281 MsG0480023376.01.T01:CDS
TCTTTGTACCATACTTGATT+GGG 0.396789 4:-84337297 MsG0480023376.01.T01:CDS
TGCAGCAGAGGAAGAAGCTC+TGG 0.413680 4:+84339275 None:intergenic
CAGATTGGCTGTTGTATCAA+TGG 0.423423 4:-84336540 MsG0480023376.01.T01:CDS
TCGATGCCATTAAGGCTTCA+TGG 0.429892 4:+84336112 None:intergenic
TGTTGTATCAATGGCTGGAC+TGG 0.438705 4:-84336531 MsG0480023376.01.T01:CDS
AAATTGGTTGGGCCAAGAAA+TGG 0.440413 4:-84338924 MsG0480023376.01.T01:CDS
TCCAGTGAATATCCCAAAAT+GGG 0.449171 4:+84336914 None:intergenic
GCTTCTTCCTCTGCTGCACC+TGG 0.456080 4:-84339270 MsG0480023376.01.T01:CDS
TTAACATATGACAAGGTTGT+TGG 0.456845 4:-84336497 MsG0480023376.01.T01:CDS
ATGTCAATCTCATTGATGAT+AGG 0.463698 4:-84336877 MsG0480023376.01.T01:CDS
GAGTCCTTCCCTTTGAGAAA+CGG 0.465517 4:+84335877 None:intergenic
TTAACTTTCCGTTTCTCAAA+GGG 0.467194 4:-84335885 MsG0480023376.01.T01:three_prime_UTR
TGCTGATCTTTGCTGAGTTG+TGG 0.475443 4:+84336325 None:intergenic
GTTGGAACAACTGGATTCTT+GGG 0.483037 4:-84338178 MsG0480023376.01.T01:CDS
CTTGAAAAGCTTCTCTATAG+TGG 0.485483 4:-84336854 MsG0480023376.01.T01:CDS
GGATTCTTGGGTATTCTGGC+TGG 0.487468 4:-84338166 MsG0480023376.01.T01:CDS
GGATACATACCCCGGGAAGC+TGG 0.488405 4:+84338143 None:intergenic
AGACAGCAATGCAGTTAAAG+AGG 0.489669 4:-84338965 MsG0480023376.01.T01:CDS
GGTATAGGCAGCACATCTCC+TGG 0.494301 4:-84337253 MsG0480023376.01.T01:CDS
TTGATGCTAAGGAGATAGAT+AGG 0.494421 4:-84336826 MsG0480023376.01.T01:intron
AATGGCATCGATGGCAAAGA+AGG 0.499709 4:-84336100 MsG0480023376.01.T01:CDS
GTCGACACCAGGTGCAGCAG+AGG 0.506013 4:+84339263 None:intergenic
ACCGTACGACGTGAAACATA+TGG 0.511639 4:+84338892 None:intergenic
TTGGCTGTTGTATCAATGGC+TGG 0.512860 4:-84336536 MsG0480023376.01.T01:CDS
ACTCTAGCTCTAGAGATCAA+TGG 0.513577 4:+84335855 None:intergenic
TGTTGACTGATGCAGGATTG+GGG 0.521890 4:-84337322 MsG0480023376.01.T01:intron
GCCATATGTTTCACGTCGTA+CGG 0.524271 4:-84338893 MsG0480023376.01.T01:intron
TAGTGGTCAGCTTGATGCTA+AGG 0.529877 4:-84336837 MsG0480023376.01.T01:CDS
TTGGGTAAAGATGATGAGTA+AGG 0.530143 4:+84339372 None:intergenic
ATCAACTGAGTGAAATTGGT+TGG 0.534376 4:-84338936 MsG0480023376.01.T01:CDS
GTTAACTTTCCGTTTCTCAA+AGG 0.534587 4:-84335886 MsG0480023376.01.T01:three_prime_UTR
GCCTATACCCAATACCACTA+AGG 0.541332 4:+84337267 None:intergenic
TGAAGCCTTAATGGCATCGA+TGG 0.543498 4:-84336109 MsG0480023376.01.T01:CDS
TCAACTGAGTGAAATTGGTT+GGG 0.547534 4:-84338935 MsG0480023376.01.T01:CDS
TTCTGACACTAGGAATTGCA+AGG 0.566777 4:+84338350 None:intergenic
TGATGTTGAAGCATGTTTGG+TGG 0.574649 4:+84339316 None:intergenic
GCAACAAAATCTCACTAGAT+GGG 0.575785 4:-84336305 MsG0480023376.01.T01:CDS
CTTTCCGTTTCTCAAAGGGA+AGG 0.577870 4:-84335881 MsG0480023376.01.T01:three_prime_UTR
TCTTGATTCTGCCATTGCCA+AGG 0.579069 4:-84339232 MsG0480023376.01.T01:intron
CTCTGGTTGTGAATTTAGGG+AGG 0.583321 4:+84339292 None:intergenic
ATGGTCAATTACCTTGGCAA+TGG 0.596299 4:+84339221 None:intergenic
CTCACATCATTTCTGACACT+AGG 0.596674 4:+84338340 None:intergenic
ATGGCTGGACTGGCAGCAGA+AGG 0.600695 4:-84336521 MsG0480023376.01.T01:CDS
AGAGTGTTGAGGTCGACACC+AGG 0.613261 4:+84339252 None:intergenic
TCTGGCTGGCCAGCTTCCCG+GGG 0.613765 4:-84338152 MsG0480023376.01.T01:intron
GTATAGGCAGCACATCTCCT+GGG 0.621976 4:-84337252 MsG0480023376.01.T01:intron
TGGCAGAATCAAGAGTGTTG+AGG 0.645439 4:+84339241 None:intergenic
AGAAGGTTTAACATATGACA+AGG 0.674545 4:-84336504 MsG0480023376.01.T01:CDS
TAAAGATGATGAGTAAGGCA+TGG 0.722574 4:+84339377 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTATAATATGGTTT+GGG + Chr4:84335931-84335950 None:intergenic 10.0%
!! TTATGGTAAAAATTATAATA+TGG + Chr4:84335937-84335956 None:intergenic 10.0%
!! ACTTCAAATAAAAATTGTAA+TGG + Chr4:84336083-84336102 None:intergenic 15.0%
!! AGTTAACACAAATAAAAAAA+TGG + Chr4:84339383-84339402 None:intergenic 15.0%
!! GCATATGAATATTTAAATAT+GGG + Chr4:84336823-84336842 None:intergenic 15.0%
!! GTAAAAATTATAATATGGTT+TGG + Chr4:84335932-84335951 None:intergenic 15.0%
!! TGCATATGAATATTTAAATA+TGG + Chr4:84336824-84336843 None:intergenic 15.0%
!!! TAAAAAGGAAATTTTATCTT+GGG - Chr4:84336709-84336728 MsG0480023376.01.T01:intron 15.0%
!!! TTAAAAAGGAAATTTTATCT+TGG - Chr4:84336708-84336727 MsG0480023376.01.T01:intron 15.0%
!! AACATTTCCCTTTAAATATT+TGG + Chr4:84336656-84336675 None:intergenic 20.0%
!! ACTTCTTCCAAATATTTAAA+GGG - Chr4:84336646-84336665 MsG0480023376.01.T01:intron 20.0%
!! AGTTATATAAAAATTACACG+AGG - Chr4:84336100-84336119 MsG0480023376.01.T01:CDS 20.0%
!! TACTTCTTCCAAATATTTAA+AGG - Chr4:84336645-84336664 MsG0480023376.01.T01:intron 20.0%
!! TCTAATTAATATGTTAGTGT+AGG - Chr4:84338115-84338134 MsG0480023376.01.T01:intron 20.0%
!! TTAACAAATGACTACAAATT+GGG + Chr4:84338670-84338689 None:intergenic 20.0%
!!! AAGTGTAAATATTTTAGAAC+TGG - Chr4:84337796-84337815 MsG0480023376.01.T01:intron 20.0%
!!! ACTTGTTAAGAAGTTTAAAA+AGG - Chr4:84336694-84336713 MsG0480023376.01.T01:intron 20.0%
!!! TAAATATTTGGAAGAAGTAT+TGG + Chr4:84336644-84336663 None:intergenic 20.0%
!!! TTCACATATTTTGAAAATAG+AGG + Chr4:84338847-84338866 None:intergenic 20.0%
! ATTTCAAAAGCTCATATTTG+TGG - Chr4:84339052-84339071 MsG0480023376.01.T01:intron 25.0%
! CAGAACATCAACATTTATAA+TGG + Chr4:84336422-84336441 None:intergenic 25.0%
! CATTATAAATGTTGATGTTC+TGG - Chr4:84336420-84336439 MsG0480023376.01.T01:intron 25.0%
! CCTAAATAACAAAGTGAAAA+TGG - Chr4:84337843-84337862 MsG0480023376.01.T01:intron 25.0%
! CTTAAAAAGCTTATATTTGC+AGG - Chr4:84339107-84339126 MsG0480023376.01.T01:intron 25.0%
! CTTAACAAATGACTACAAAT+TGG + Chr4:84338671-84338690 None:intergenic 25.0%
! GATAGATAGGTATATTTACT+AGG - Chr4:84338469-84338488 MsG0480023376.01.T01:intron 25.0%
! GTATCAAATGGAATTATACA+TGG - Chr4:84336994-84337013 MsG0480023376.01.T01:intron 25.0%
! TAGTGCATATTCTTAAATCA+CGG - Chr4:84338498-84338517 MsG0480023376.01.T01:intron 25.0%
! TATATGATATGACATGAACA+CGG - Chr4:84338583-84338602 MsG0480023376.01.T01:intron 25.0%
!! AACTTTAGGGATTAAAAATG+CGG - Chr4:84336905-84336924 MsG0480023376.01.T01:CDS 25.0%
!! AAGTATATATTTTGCTACAG+AGG - Chr4:84338916-84338935 MsG0480023376.01.T01:CDS 25.0%
!! AGATAAATTTGGAATTGGAA+TGG + Chr4:84337322-84337341 None:intergenic 25.0%
!! ATATAGGAGTTTTCTAAACT+AGG + Chr4:84338568-84338587 None:intergenic 25.0%
!! ATGGATTGAATACAATTTCA+CGG + Chr4:84336216-84336235 None:intergenic 25.0%
!! CTGCAAATATAAGCTTTTTA+AGG + Chr4:84339109-84339128 None:intergenic 25.0%
!! TAATTAGAGCATTAATGCTA+TGG + Chr4:84338103-84338122 None:intergenic 25.0%
!! TACTCAGATAAATTTGGAAT+TGG + Chr4:84337327-84337346 None:intergenic 25.0%
!! TCAAAGTACTCAGATAAATT+TGG + Chr4:84337333-84337352 None:intergenic 25.0%
!! TGAAAAAGGAAATTCCATTT+TGG + Chr4:84337586-84337605 None:intergenic 25.0%
!! TTTTTCCTGATTATCAAGAA+AGG - Chr4:84338172-84338191 MsG0480023376.01.T01:CDS 25.0%
!!! CCATTTTCACTTTGTTATTT+AGG + Chr4:84337846-84337865 None:intergenic 25.0%
!!! TATTGCTTGTTTTTTCAGAT+TGG - Chr4:84338727-84338746 MsG0480023376.01.T01:intron 25.0%
!!! TCTATTTTTGCAGTATCAAA+TGG - Chr4:84336982-84337001 MsG0480023376.01.T01:intron 25.0%
!!! TCTGCATTATGCTTTTTTTA+GGG - Chr4:84337678-84337697 MsG0480023376.01.T01:intron 25.0%
!!! TTCTGCATTATGCTTTTTTT+AGG - Chr4:84337677-84337696 MsG0480023376.01.T01:intron 25.0%
AAATGGTAGTTTATACCGTT+TGG - Chr4:84336245-84336264 MsG0480023376.01.T01:intron 30.0%
AAGTACCAATGTGAAGAAAT+AGG - Chr4:84338695-84338714 MsG0480023376.01.T01:intron 30.0%
AATATTTAACTAGTGCCCTA+AGG - Chr4:84336781-84336800 MsG0480023376.01.T01:intron 30.0%
AATGGTAGTTTATACCGTTT+GGG - Chr4:84336246-84336265 MsG0480023376.01.T01:intron 30.0%
ACATATAACACAGATCTTTG+TGG - Chr4:84337055-84337074 MsG0480023376.01.T01:intron 30.0%
ACTACCATTTCAATGAACAA+TGG + Chr4:84336235-84336254 None:intergenic 30.0%
AGAAGGTTTAACATATGACA+AGG - Chr4:84338778-84338797 MsG0480023376.01.T01:intron 30.0%
AGAGTTAAAAGAAGCCAAAA+TGG - Chr4:84337569-84337588 MsG0480023376.01.T01:intron 30.0%
AGTAAGAAGGTGAAAACTAT+TGG + Chr4:84337901-84337920 None:intergenic 30.0%
AGTATTTCCTTAGTGGTATT+GGG - Chr4:84338008-84338027 MsG0480023376.01.T01:intron 30.0%
ATATCAGCCATAAAAGCAAT+AGG + Chr4:84338236-84338255 None:intergenic 30.0%
ATATTTAACTAGTGCCCTAA+GGG - Chr4:84336782-84336801 MsG0480023376.01.T01:intron 30.0%
ATTGTAATGGTCAATTACCT+TGG + Chr4:84336070-84336089 None:intergenic 30.0%
CAATCCATTGTTCATTGAAA+TGG - Chr4:84336228-84336247 MsG0480023376.01.T01:intron 30.0%
CAATGTAACAATATGTGTTG+TGG + Chr4:84336547-84336566 None:intergenic 30.0%
GACAAAAATGCATAAACTTG+AGG + Chr4:84339087-84339106 None:intergenic 30.0%
GTAAGAAGGTGAAAACTATT+GGG + Chr4:84337900-84337919 None:intergenic 30.0%
GTGTTCATGTCATATCATAT+AGG + Chr4:84338584-84338603 None:intergenic 30.0%
GTTCAGTTATATTACCCAAA+CGG + Chr4:84336263-84336282 None:intergenic 30.0%
TATCAGCCATAAAAGCAATA+GGG + Chr4:84338235-84338254 None:intergenic 30.0%
TCTTTGTACCATACTTGATT+GGG - Chr4:84337985-84338004 MsG0480023376.01.T01:intron 30.0%
TGGATTGAATACAATTTCAC+GGG + Chr4:84336215-84336234 None:intergenic 30.0%
TGTCGAATTTCACAAAATCA+TGG + Chr4:84338529-84338548 None:intergenic 30.0%
TTAACATATGACAAGGTTGT+TGG - Chr4:84338785-84338804 MsG0480023376.01.T01:intron 30.0%
TTAACTTTCCGTTTCTCAAA+GGG - Chr4:84339397-84339416 MsG0480023376.01.T01:exon 30.0%
TTCTTTGTACCATACTTGAT+TGG - Chr4:84337984-84338003 MsG0480023376.01.T01:intron 30.0%
! ATGTCAATCTCATTGATGAT+AGG - Chr4:84338405-84338424 MsG0480023376.01.T01:intron 30.0%
! CTTTACCTATTTCTTCACAT+TGG + Chr4:84338703-84338722 None:intergenic 30.0%
AAATGTTAACAAGTGCCCTT+GGG - Chr4:84336669-84336688 MsG0480023376.01.T01:intron 35.0%
AACACTTCACTTCAGATTGA+GGG - Chr4:84336490-84336509 MsG0480023376.01.T01:CDS 35.0%
AAGTGTGGATATAGCATTCA+TGG - Chr4:84337259-84337278 MsG0480023376.01.T01:CDS 35.0%
AATTTGATGTCGCAATGAAG+CGG + Chr4:84337375-84337394 None:intergenic 35.0%
AGCAACAAAATCTCACTAGA+TGG - Chr4:84338976-84338995 MsG0480023376.01.T01:intron 35.0%
ATCAACTGAGTGAAATTGGT+TGG - Chr4:84336346-84336365 MsG0480023376.01.T01:CDS 35.0%
ATCCAGTGAATATCCCAAAA+TGG + Chr4:84338372-84338391 None:intergenic 35.0%
CAGAAGTTTAAGAATGTCCT+TGG - Chr4:84337761-84337780 MsG0480023376.01.T01:intron 35.0%
CTACAGCTTGAAATTATGAC+TGG - Chr4:84337461-84337480 MsG0480023376.01.T01:intron 35.0%
CTTGAAAAGCTTCTCTATAG+TGG - Chr4:84338428-84338447 MsG0480023376.01.T01:intron 35.0%
CTTGATCAACTGAGTGAAAT+TGG - Chr4:84336342-84336361 MsG0480023376.01.T01:CDS 35.0%
GAAATACTCCCAATCAAGTA+TGG + Chr4:84337996-84338015 None:intergenic 35.0%
GAGTATTTCCTTAGTGGTAT+TGG - Chr4:84338007-84338026 MsG0480023376.01.T01:intron 35.0%
GCAACAAAATCTCACTAGAT+GGG - Chr4:84338977-84338996 MsG0480023376.01.T01:intron 35.0%
GGATTGAATACAATTTCACG+GGG + Chr4:84336214-84336233 None:intergenic 35.0%
GGCATAACAAGCAAGTTAAA+AGG + Chr4:84337825-84337844 None:intergenic 35.0%
GTTAACTTTCCGTTTCTCAA+AGG - Chr4:84339396-84339415 MsG0480023376.01.T01:exon 35.0%
TAAAGATGATGAGTAAGGCA+TGG + Chr4:84335908-84335927 None:intergenic 35.0%
TAACACTTCACTTCAGATTG+AGG - Chr4:84336489-84336508 MsG0480023376.01.T01:CDS 35.0%
TAAGAACTACGCTTACAAGT+TGG - Chr4:84338053-84338072 MsG0480023376.01.T01:intron 35.0%
TAGCGATTGTTCAAAAGAAG+TGG + Chr4:84337642-84337661 None:intergenic 35.0%
TCAAAAGCTCATATTTGTGG+AGG - Chr4:84339055-84339074 MsG0480023376.01.T01:intron 35.0%
TCAACTGAGTGAAATTGGTT+GGG - Chr4:84336347-84336366 MsG0480023376.01.T01:CDS 35.0%
TCCAGTGAATATCCCAAAAT+GGG + Chr4:84338371-84338390 None:intergenic 35.0%
TTCTAAACTAGGTGTCTGTT+TGG + Chr4:84338557-84338576 None:intergenic 35.0%
TTGATGCTAAGGAGATAGAT+AGG - Chr4:84338456-84338475 MsG0480023376.01.T01:intron 35.0%
TTGGGATATTCACTGGATAT+TGG - Chr4:84338374-84338393 MsG0480023376.01.T01:CDS 35.0%
TTGGGTAAAGATGATGAGTA+AGG + Chr4:84335913-84335932 None:intergenic 35.0%
! AAGCTCTGGTTGTGAATTTA+GGG + Chr4:84335996-84336015 None:intergenic 35.0%
! AAGTAACAAAGAAGAGTGCA+AGG + Chr4:84337164-84337183 None:intergenic 35.0%
! AGTAACAAAGAAGAGTGCAA+GGG + Chr4:84337163-84337182 None:intergenic 35.0%
! CACTTTTCACTTATCTACCA+AGG + Chr4:84337781-84337800 None:intergenic 35.0%
! GCAATCCTTTCTTGATAATC+AGG + Chr4:84338180-84338199 None:intergenic 35.0%
! GTGAAGTGTTAGTGCTATAT+AGG + Chr4:84336480-84336499 None:intergenic 35.0%
!! AGAGTTGATGAGAAGTAAGA+AGG + Chr4:84337914-84337933 None:intergenic 35.0%
!! AGTAGTGTTATTTGCAAGTG+TGG - Chr4:84337244-84337263 MsG0480023376.01.T01:intron 35.0%
!! TTTCTAGTTGCTTATCTGCT+TGG - Chr4:84338341-84338360 MsG0480023376.01.T01:intron 35.0%
!! TTTGGTGGTGATGATGATTA+TGG + Chr4:84335954-84335973 None:intergenic 35.0%
AAAAGCTGCTAATAGCTGCT+TGG + Chr4:84338146-84338165 None:intergenic 40.0%
AAATTGGTTGGGCCAAGAAA+TGG - Chr4:84336358-84336377 MsG0480023376.01.T01:intron 40.0%
AACTAGGTGTCTGTTTGGAT+TGG + Chr4:84338552-84338571 None:intergenic 40.0%
AACTGGATTCTTGGGTATTC+TGG - Chr4:84337112-84337131 MsG0480023376.01.T01:intron 40.0%
AATGTTAACAAGTGCCCTTG+GGG - Chr4:84336670-84336689 MsG0480023376.01.T01:intron 40.0%
ACGAGGTTATACTCGATGAT+GGG - Chr4:84336117-84336136 MsG0480023376.01.T01:CDS 40.0%
ACTTGTGATGCAGGTGAAAA+AGG + Chr4:84337600-84337619 None:intergenic 40.0%
AGACAGCAATGCAGTTAAAG+AGG - Chr4:84336317-84336336 MsG0480023376.01.T01:CDS 40.0%
AGCTTGAAATTATGACTGGC+AGG - Chr4:84337465-84337484 MsG0480023376.01.T01:intron 40.0%
ATAGGGCAGTACTCAAAAAG+TGG + Chr4:84338218-84338237 None:intergenic 40.0%
ATCTTTGCTGAGTTGTGGTT+TGG + Chr4:84338955-84338974 None:intergenic 40.0%
ATGGTCAATTACCTTGGCAA+TGG + Chr4:84336064-84336083 None:intergenic 40.0%
CTCACATCATTTCTGACACT+AGG + Chr4:84336945-84336964 None:intergenic 40.0%
CTTGTTAACCAATGCCCTTA+GGG + Chr4:84336799-84336818 None:intergenic 40.0%
GAAAATAGAGGTCTCAAACC+TGG + Chr4:84338835-84338854 None:intergenic 40.0%
GAAATGTTAACAAGTGCCCT+TGG - Chr4:84336668-84336687 MsG0480023376.01.T01:intron 40.0%
GCATTCATGGTTTCACATTG+TGG - Chr4:84337272-84337291 MsG0480023376.01.T01:CDS 40.0%
GGTGTATCTTACATGTGTTG+TGG - Chr4:84336511-84336530 MsG0480023376.01.T01:CDS 40.0%
GTAGACTAAACTTGTGATGC+AGG + Chr4:84337609-84337628 None:intergenic 40.0%
GTTGGAACAACTGGATTCTT+GGG - Chr4:84337104-84337123 MsG0480023376.01.T01:intron 40.0%
TAGGGCAGTACTCAAAAAGT+GGG + Chr4:84338217-84338236 None:intergenic 40.0%
TATGACATGAACACGGAATG+TGG - Chr4:84338590-84338609 MsG0480023376.01.T01:intron 40.0%
TCTTGTTAACCAATGCCCTT+AGG + Chr4:84336800-84336819 None:intergenic 40.0%
TGATGTCTGTCGCACAAATT+TGG + Chr4:84336871-84336890 None:intergenic 40.0%
TGATGTTGAAGCATGTTTGG+TGG + Chr4:84335969-84335988 None:intergenic 40.0%
TTCGAGAGCTGACAACTTTA+GGG - Chr4:84336892-84336911 MsG0480023376.01.T01:CDS 40.0%
TTCTGACACTAGGAATTGCA+AGG + Chr4:84336935-84336954 None:intergenic 40.0%
TTGCTTATTGCTATGTCCCT+TGG + Chr4:84336453-84336472 None:intergenic 40.0%
TTTACTGTGGTTGGAACAAC+TGG - Chr4:84337095-84337114 MsG0480023376.01.T01:intron 40.0%
! ATGTTCTGGATAGATGCCAA+GGG - Chr4:84336434-84336453 MsG0480023376.01.T01:intron 40.0%
! CAGATTGGCTGTTGTATCAA+TGG - Chr4:84338742-84338761 MsG0480023376.01.T01:intron 40.0%
! GAAGCTCTGGTTGTGAATTT+AGG + Chr4:84335997-84336016 None:intergenic 40.0%
! GCTTTTCTCTTTACTGTGGT+TGG - Chr4:84337086-84337105 MsG0480023376.01.T01:intron 40.0%
! GGTAGGCTTGTAGTCTTTTA+TGG - Chr4:84337498-84337517 MsG0480023376.01.T01:intron 40.0%
! GGTTGATGTTGAAGCATGTT+TGG + Chr4:84335972-84335991 None:intergenic 40.0%
! TAATGCTTGTTGACTGATGC+AGG - Chr4:84337953-84337972 MsG0480023376.01.T01:intron 40.0%
! TCCTTAGTGGTATTGGGTAT+AGG - Chr4:84338014-84338033 MsG0480023376.01.T01:intron 40.0%
! TTGTTGACTGATGCAGGATT+GGG - Chr4:84337959-84337978 MsG0480023376.01.T01:intron 40.0%
!! ACTCTAGCTCTAGAGATCAA+TGG + Chr4:84339430-84339449 None:intergenic 40.0%
!! GATTGGGAGTATTTCCTTAG+TGG - Chr4:84338001-84338020 MsG0480023376.01.T01:intron 40.0%
!! GTACTGCCCTATTGCTTTTA+TGG - Chr4:84338226-84338245 MsG0480023376.01.T01:intron 40.0%
!! TGTCTCCTCTTTGAAGTTGA+CGG - Chr4:84337709-84337728 MsG0480023376.01.T01:intron 40.0%
!!! ACCCATTTTGGGATATTCAC+TGG - Chr4:84338367-84338386 MsG0480023376.01.T01:CDS 40.0%
AACACAGATCTTTGTGGTGC+AGG - Chr4:84337061-84337080 MsG0480023376.01.T01:intron 45.0%
ACCGTACGACGTGAAACATA+TGG + Chr4:84336393-84336412 None:intergenic 45.0%
ACTTCTTAACAAGTGCCCCA+AGG + Chr4:84336688-84336707 None:intergenic 45.0%
ATTATGACTGGCAGGCCATT+TGG - Chr4:84337473-84337492 MsG0480023376.01.T01:intron 45.0%
CACGAGGTTATACTCGATGA+TGG - Chr4:84336116-84336135 MsG0480023376.01.T01:CDS 45.0%
CGAGGTTATACTCGATGATG+GGG - Chr4:84336118-84336137 MsG0480023376.01.T01:CDS 45.0%
CTCTGGTTGTGAATTTAGGG+AGG + Chr4:84335993-84336012 None:intergenic 45.0%
CTTCGAGAGCTGACAACTTT+AGG - Chr4:84336891-84336910 MsG0480023376.01.T01:CDS 45.0%
CTTCTTAACAAGTGCCCCAA+GGG + Chr4:84336687-84336706 None:intergenic 45.0%
CTTTCCGTTTCTCAAAGGGA+AGG - Chr4:84339401-84339420 MsG0480023376.01.T01:exon 45.0%
CTTTGCCATCGATGCCATTA+AGG + Chr4:84339181-84339200 None:intergenic 45.0%
GCCATATGTTTCACGTCGTA+CGG - Chr4:84336389-84336408 MsG0480023376.01.T01:intron 45.0%
GCCTATACCCAATACCACTA+AGG + Chr4:84338018-84338037 None:intergenic 45.0%
GCTATGGCAAACACTGAAGA+GGG + Chr4:84338087-84338106 None:intergenic 45.0%
GGTTGGAACAACTGGATTCT+TGG - Chr4:84337103-84337122 MsG0480023376.01.T01:intron 45.0%
GTCGATCCATGAAGCCTTAA+TGG - Chr4:84339164-84339183 MsG0480023376.01.T01:intron 45.0%
TAGTGGTCAGCTTGATGCTA+AGG - Chr4:84338445-84338464 MsG0480023376.01.T01:intron 45.0%
TCGATGCCATTAAGGCTTCA+TGG + Chr4:84339173-84339192 None:intergenic 45.0%
TCTGTCGCACAAATTTGGAG+AGG + Chr4:84336866-84336885 None:intergenic 45.0%
TCTTGATTCTGCCATTGCCA+AGG - Chr4:84336050-84336069 MsG0480023376.01.T01:exon 45.0%
TGCTATGGCAAACACTGAAG+AGG + Chr4:84338088-84338107 None:intergenic 45.0%
TGCTGATCTTTGCTGAGTTG+TGG + Chr4:84338960-84338979 None:intergenic 45.0%
TGGCTGAGAACTCCATTTCT+TGG + Chr4:84336373-84336392 None:intergenic 45.0%
TGTAAGCGTAGTTCTTACCC+AGG + Chr4:84338050-84338069 None:intergenic 45.0%
TGTTGTATCAATGGCTGGAC+TGG - Chr4:84338751-84338770 MsG0480023376.01.T01:intron 45.0%
TTGGCTGTTGTATCAATGGC+TGG - Chr4:84338746-84338765 MsG0480023376.01.T01:intron 45.0%
! CTGCTTGGCTTACCCATTTT+GGG - Chr4:84338356-84338375 MsG0480023376.01.T01:CDS 45.0%
! CTTGTTGACTGATGCAGGAT+TGG - Chr4:84337958-84337977 MsG0480023376.01.T01:intron 45.0%
! GAGTCCTTCCCTTTGAGAAA+CGG + Chr4:84339408-84339427 None:intergenic 45.0%
! GATGTTCTGGATAGATGCCA+AGG - Chr4:84336433-84336452 MsG0480023376.01.T01:intron 45.0%
! GGCAGCTTTTCTCTTTACTG+TGG - Chr4:84337082-84337101 MsG0480023376.01.T01:intron 45.0%
! TCTAGAGCTAGAGTTCAGTG+CGG - Chr4:84339436-84339455 MsG0480023376.01.T01:five_prime_UTR 45.0%
! TCTGCTTGGCTTACCCATTT+TGG - Chr4:84338355-84338374 MsG0480023376.01.T01:CDS 45.0%
! TGAAGCCTTAATGGCATCGA+TGG - Chr4:84339173-84339192 MsG0480023376.01.T01:intron 45.0%
! TGCTGATCTTTTCACTCTCC+AGG - Chr4:84338814-84338833 MsG0480023376.01.T01:intron 45.0%
! TGTTGACTGATGCAGGATTG+GGG - Chr4:84337960-84337979 MsG0480023376.01.T01:intron 45.0%
!! AATGGCATCGATGGCAAAGA+AGG - Chr4:84339182-84339201 MsG0480023376.01.T01:intron 45.0%
!! GTCTCCTCTTTGAAGTTGAC+GGG - Chr4:84337710-84337729 MsG0480023376.01.T01:intron 45.0%
!! TGGCAGAATCAAGAGTGTTG+AGG + Chr4:84336044-84336063 None:intergenic 45.0%
AGTGCAAGGGATACATACCC+CGG + Chr4:84337150-84337169 None:intergenic 50.0%
CTACAAGCCTACCAGCCAAA+TGG + Chr4:84337491-84337510 None:intergenic 50.0%
GGATTCTTGGGTATTCTGGC+TGG - Chr4:84337116-84337135 MsG0480023376.01.T01:intron 50.0%
GTATAGGCAGCACATCTCCT+GGG - Chr4:84338030-84338049 MsG0480023376.01.T01:intron 50.0%
TGAGCCCGTCAACTTCAAAG+AGG + Chr4:84337717-84337736 None:intergenic 50.0%
! AACTAGTGCCCTAAGGGCAT+TGG - Chr4:84336788-84336807 MsG0480023376.01.T01:intron 50.0%
!! CTCGATGATGGGGAACATGA+AGG - Chr4:84336128-84336147 MsG0480023376.01.T01:CDS 50.0%
GGTATAGGCAGCACATCTCC+TGG - Chr4:84338029-84338048 MsG0480023376.01.T01:intron 55.0%
GTGCAAGGGATACATACCCC+GGG + Chr4:84337149-84337168 None:intergenic 55.0%
TGCAGCAGAGGAAGAAGCTC+TGG + Chr4:84336010-84336029 None:intergenic 55.0%
!! AGAGTGTTGAGGTCGACACC+AGG + Chr4:84336033-84336052 None:intergenic 55.0%
GCTTCTTCCTCTGCTGCACC+TGG - Chr4:84336012-84336031 MsG0480023376.01.T01:three_prime_UTR 60.0%
GGATACATACCCCGGGAAGC+TGG + Chr4:84337142-84337161 None:intergenic 60.0%
TGACTGGCAGGCCATTTGGC+TGG - Chr4:84337477-84337496 MsG0480023376.01.T01:intron 60.0%
TGGCAGGCCATTTGGCTGGT+AGG - Chr4:84337481-84337500 MsG0480023376.01.T01:intron 60.0%
! ATTCTGGCTGGCCAGCTTCC+CGG - Chr4:84337128-84337147 MsG0480023376.01.T01:intron 60.0%
!! ATGGCTGGACTGGCAGCAGA+AGG - Chr4:84338761-84338780 MsG0480023376.01.T01:intron 60.0%
GTCGACACCAGGTGCAGCAG+AGG + Chr4:84336022-84336041 None:intergenic 65.0%
! TTCTGGCTGGCCAGCTTCCC+GGG - Chr4:84337129-84337148 MsG0480023376.01.T01:intron 65.0%
! TCTGGCTGGCCAGCTTCCCG+GGG - Chr4:84337130-84337149 MsG0480023376.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 84335848 84339456 84335848 ID=MsG0480023376.01;Name=MsG0480023376.01
Chr4 mRNA 84335848 84339456 84335848 ID=MsG0480023376.01.T01;Parent=MsG0480023376.01;Name=MsG0480023376.01.T01;_AED=0.49;_eAED=0.50;_QI=44|0.87|0.88|1|1|1|9|208|310
Chr4 exon 84335848 84336175 84335848 ID=MsG0480023376.01.T01:exon:5678;Parent=MsG0480023376.01.T01
Chr4 exon 84336303 84336368 84336303 ID=MsG0480023376.01.T01:exon:5677;Parent=MsG0480023376.01.T01
Chr4 exon 84336469 84336559 84336469 ID=MsG0480023376.01.T01:exon:5676;Parent=MsG0480023376.01.T01
Chr4 exon 84336827 84336985 84336827 ID=MsG0480023376.01.T01:exon:5675;Parent=MsG0480023376.01.T01
Chr4 exon 84337253 84337329 84337253 ID=MsG0480023376.01.T01:exon:5674;Parent=MsG0480023376.01.T01
Chr4 exon 84338153 84338221 84338153 ID=MsG0480023376.01.T01:exon:5673;Parent=MsG0480023376.01.T01
Chr4 exon 84338345 84338419 84338345 ID=MsG0480023376.01.T01:exon:5672;Parent=MsG0480023376.01.T01
Chr4 exon 84338894 84338989 84338894 ID=MsG0480023376.01.T01:exon:5671;Parent=MsG0480023376.01.T01
Chr4 exon 84339233 84339456 84339233 ID=MsG0480023376.01.T01:exon:5670;Parent=MsG0480023376.01.T01
Chr4 five_prime_UTR 84339413 84339456 84339413 ID=MsG0480023376.01.T01:five_prime_utr;Parent=MsG0480023376.01.T01
Chr4 CDS 84339233 84339412 84339233 ID=MsG0480023376.01.T01:cds;Parent=MsG0480023376.01.T01
Chr4 CDS 84338894 84338989 84338894 ID=MsG0480023376.01.T01:cds;Parent=MsG0480023376.01.T01
Chr4 CDS 84338345 84338419 84338345 ID=MsG0480023376.01.T01:cds;Parent=MsG0480023376.01.T01
Chr4 CDS 84338153 84338221 84338153 ID=MsG0480023376.01.T01:cds;Parent=MsG0480023376.01.T01
Chr4 CDS 84337253 84337329 84337253 ID=MsG0480023376.01.T01:cds;Parent=MsG0480023376.01.T01
Chr4 CDS 84336827 84336985 84336827 ID=MsG0480023376.01.T01:cds;Parent=MsG0480023376.01.T01
Chr4 CDS 84336469 84336559 84336469 ID=MsG0480023376.01.T01:cds;Parent=MsG0480023376.01.T01
Chr4 CDS 84336303 84336368 84336303 ID=MsG0480023376.01.T01:cds;Parent=MsG0480023376.01.T01
Chr4 CDS 84336056 84336175 84336056 ID=MsG0480023376.01.T01:cds;Parent=MsG0480023376.01.T01
Chr4 three_prime_UTR 84335848 84336055 84335848 ID=MsG0480023376.01.T01:three_prime_utr;Parent=MsG0480023376.01.T01
Gene Sequence

>MsG0480023376.01.T01

ATGTTGATCACAACCATGCCTTACTCATCATCTTTACCCAAACCATATTATAATTTTTACCATAATCATCATCACCACCAAACATGCTTCAACATCAACCTCCCTAAATTCACAACCAGAGCTTCTTCCTCTGCTGCACCTGGTGTCGACCTCAACACTCTTGATTCTGCCATTGCCAAGAAAGACAGCAATGCAGTTAAAGAGGCACTTGATCAACTGAGTGAAATTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCACGTCGTACGACATCACTTCGAGAGCTGACAACTTTAGGGATTAAAAATGCGGAGAACCTTGCAATTCCTAGTGTCAGAAATGATGCAGCTTTTCTCTTTACTGTGGTTGGAACAACTGGATTCTTGGGTATTCTGGCTGGCCAGCTTCCCGGGGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCCTTAGTGGTATTGGGTATAGGCAGCACATCTCCTGGCTTCTTCTTTTTGTTCATTCTATTTCTAGTTGCTTATCTGCTTGGCTTACCCATTTTGGGATATTCACTGGATATTGGAAAAGAGCATGTCAATCTCATTGATGATAGGCTTGAAAAGCTTCTCTATAGTGGTCAGCTTGATGCTAAGGAGATAGATAGATTGGCTGTTGTATCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTTGTTGGTCAATCTGCTGATCTTTTCACTCTCCAGAGGTTTATAAACAGAACCAAACCACAACTCAGCAAAGATCAGCAACAAAATCTCACTAGATGGGCAGTTTTGTTCGCTGCTTCTCTATTGAAAAACAACAAGTCGATCCATGAAGCCTTAATGGCATCGATGGCAAAGAAGGCAAGTGTACTCGAGTGCATTCAAACAATCGAAAGTGCATCATAG

Protein sequence

>MsG0480023376.01.T01

MLITTMPYSSSLPKPYYNFYHNHHHHQTCFNINLPKFTTRASSSAAPGVDLNTLDSAIAKKDSNAVKEALDQLSEIGWAKKWSSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGILAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPGFFFLFILFLVAYLLGLPILGYSLDIGKEHVNLIDDRLEKLLYSGQLDAKEIDRLAVVSMAGLAAEGLTYDKVVGQSADLFTLQRFINRTKPQLSKDQQQNLTRWAVLFAASLLKNNKSIHEALMASMAKKASVLECIQTIESAS*