AlfalfaGEDB | MsG0480018486.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018486.01

KEGG: -
GO: GO:0051287 GO:0055114
PFAM: PF02826

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018486.01.T01	XP_013454758.1	97.531	162	4	0	1	162	152	313	1.27E-109	325

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018486.01.T01	A5CAL1	81.481	162	30	0	1	162	152	313	4.26E-91	270

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018486.01.T01	A0A072UGC3	97.531	162	4	0	1	162	152	313	6.08e-110	325

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048738.01	MsG0480018486.01	0.833981	3.901343e-56	4.567198e-53
MsG0080048889.01	MsG0480018486.01	0.802802	4.718813e-49	2.333147e-46
MsG0080049008.01	MsG0480018486.01	0.805285	1.437423e-49	7.574610e-47
MsG0080049023.01	MsG0480018486.01	-0.804645	1.955738e-49	1.013778e-46
MsG0080049038.01	MsG0480018486.01	-0.800672	1.291456e-48	6.049190e-46
MsG0180000367.01	MsG0480018486.01	0.822446	2.359215e-53	1.975159e-50
MsG0180000466.01	MsG0480018486.01	0.813319	2.718893e-51	1.769782e-48
MsG0180000719.01	MsG0480018486.01	-0.803531	3.335227e-49	1.680105e-46
MsG0180001054.01	MsG0480018486.01	-0.808333	3.260507e-50	1.859248e-47
MsG0180001147.01	MsG0480018486.01	-0.813535	2.436365e-51	1.595320e-48
MsG0180001169.01	MsG0480018486.01	0.803926	2.761503e-49	1.405332e-46
MsG0180002404.01	MsG0480018486.01	0.806588	7.649330e-50	4.167615e-47
MsG0180003351.01	MsG0480018486.01	-0.804271	2.340325e-49	1.201480e-46
MsG0180003405.01	MsG0480018486.01	-0.828348	9.449729e-55	9.367871e-52
MsG0180003484.01	MsG0480018486.01	0.828463	8.865769e-55	8.818868e-52
MsG0180003504.01	MsG0480018486.01	0.808255	3.387555e-50	1.927753e-47
MsG0180003905.01	MsG0480018486.01	0.867434	1.372754e-65	4.792192e-62
MsG0180004064.01	MsG0480018486.01	0.821814	3.305013e-53	2.717650e-50
MsG0180004124.01	MsG0480018486.01	-0.815412	9.366494e-52	6.453078e-49
MsG0180004125.01	MsG0480018486.01	-0.822129	2.793808e-53	2.317888e-50
MsG0180004322.01	MsG0480018486.01	-0.811273	7.602433e-51	4.685366e-48
MsG0180004581.01	MsG0480018486.01	-0.805254	1.459117e-49	7.682689e-47
MsG0180004705.01	MsG0480018486.01	0.828443	8.967395e-55	8.914791e-52
MsG0180004737.01	MsG0480018486.01	-0.805079	1.587494e-49	8.321546e-47
MsG0180004828.01	MsG0480018486.01	0.809535	1.803659e-50	1.061731e-47
MsG0180005369.01	MsG0480018486.01	-0.829781	4.247946e-55	4.391999e-52
MsG0180005681.01	MsG0480018486.01	0.809503	1.832641e-50	1.077843e-47
MsG0180005819.01	MsG0480018486.01	0.884976	1.209333e-71	8.151558e-68
MsG0180005833.01	MsG0480018486.01	-0.823819	1.128256e-53	9.820541e-51
MsG0180005984.01	MsG0480018486.01	0.818625	1.777935e-52	1.337666e-49
MsG0180006116.01	MsG0480018486.01	0.833361	5.575251e-56	6.405961e-53
MsG0180006183.01	MsG0480018486.01	0.836524	8.897659e-57	1.124119e-53
MsG0280006316.01	MsG0480018486.01	0.817527	3.149457e-52	2.299115e-49
MsG0280006381.01	MsG0480018486.01	-0.804185	2.439068e-49	1.249404e-46
MsG0280010617.01	MsG0480018486.01	0.809503	1.832175e-50	1.077577e-47
MsG0280010854.01	MsG0480018486.01	-0.831351	1.754067e-55	1.898522e-52
MsG0280010994.01	MsG0480018486.01	-0.803950	2.729382e-49	1.389830e-46
MsG0280011281.01	MsG0480018486.01	-0.820791	5.690813e-53	4.547176e-50
MsG0280011475.01	MsG0480018486.01	-0.800239	1.581820e-48	7.328263e-46
MsG0380012148.01	MsG0480018486.01	-0.802977	4.343303e-49	2.156853e-46
MsG0380014231.01	MsG0480018486.01	-0.821810	3.312836e-53	2.723737e-50
MsG0380014639.01	MsG0480018486.01	-0.830190	3.375837e-55	3.531537e-52
MsG0380014642.01	MsG0480018486.01	-0.815822	7.592984e-52	5.290234e-49
MsG0380014735.01	MsG0480018486.01	-0.822829	1.921593e-53	1.626446e-50
MsG0480018486.01	MsG0480018767.01	0.811964	5.379381e-51	3.376638e-48
MsG0480018486.01	MsG0480019171.01	0.807649	4.559225e-50	2.553283e-47
MsG0480018486.01	MsG0480020398.01	0.810109	1.357325e-50	8.111731e-48
MsG0480018486.01	MsG0480020938.01	-0.800032	1.743055e-48	8.032845e-46
MsG0480018486.01	MsG0480021175.01	0.814850	1.248647e-51	8.471844e-49
MsG0480018486.01	MsG0480021226.01	0.831816	1.346646e-55	1.478006e-52
MsG0480018486.01	MsG0480021231.01	0.833516	5.099305e-56	5.886429e-53
MsG0480018486.01	MsG0480021433.01	0.820602	6.290316e-53	4.999450e-50
MsG0480018486.01	MsG0480021740.01	0.815637	8.348828e-52	5.787868e-49
MsG0480018486.01	MsG0480021967.01	-0.801134	1.038874e-48	4.923703e-46
MsG0480018486.01	MsG0480022241.01	-0.812746	3.630445e-51	2.327129e-48
MsG0480018486.01	MsG0480022242.01	-0.837972	3.791948e-57	5.007645e-54
MsG0480018486.01	MsG0480022244.01	-0.826932	2.068249e-54	1.967460e-51
MsG0480018486.01	MsG0480022687.01	-0.804069	2.577676e-49	1.316602e-46
MsG0480018486.01	MsG0480023067.01	0.852323	4.977683e-61	1.036357e-57
MsG0480018486.01	MsG0480023103.01	-0.811459	6.928499e-51	4.291231e-48
MsG0480018486.01	MsG0480023125.01	0.825287	5.089320e-54	4.619114e-51
MsG0480018486.01	MsG0480023152.01	-0.802137	6.469552e-49	3.144906e-46
MsG0480018486.01	MsG0480023173.01	-0.812726	3.668084e-51	2.350004e-48
MsG0480018486.01	MsG0480023244.01	-0.807068	6.053368e-50	3.339335e-47
MsG0480018486.01	MsG0480023322.01	0.806280	8.882123e-50	4.801579e-47
MsG0480018486.01	MsG0480023375.01	-0.801228	9.942594e-49	4.723117e-46
MsG0480018486.01	MsG0480023386.01	-0.804590	2.007639e-49	1.039217e-46
MsG0480018486.01	MsG0480023414.01	0.817016	4.102740e-52	2.953681e-49
MsG0480018486.01	MsG0480023626.01	0.807267	5.495136e-50	3.047207e-47
MsG0480018486.01	MsG0480023663.01	0.801500	8.744696e-49	4.182780e-46
MsG0480018486.01	MsG0480023851.01	-0.833299	5.776914e-56	6.625400e-53
MsG0480018486.01	MsG0580025486.01	-0.830710	2.518934e-55	2.675300e-52
MsG0480018486.01	MsG0580025620.01	0.809107	2.228049e-50	1.296678e-47
MsG0480018486.01	MsG0580025633.01	0.874846	4.905494e-68	2.242681e-64
MsG0480018486.01	MsG0580025896.01	0.804230	2.386378e-49	1.223818e-46
MsG0480018486.01	MsG0580026029.01	0.858171	9.894613e-63	2.502802e-59
MsG0480018486.01	MsG0580026073.01	-0.812900	3.358708e-51	2.161699e-48
MsG0480018486.01	MsG0580026343.01	0.819133	1.363046e-52	1.040012e-49
MsG0480018486.01	MsG0580026446.01	0.802089	6.620838e-49	3.214485e-46
MsG0480018486.01	MsG0580026492.01	0.811184	7.949876e-51	4.888115e-48
MsG0480018486.01	MsG0580027276.01	-0.827332	1.658492e-54	1.596391e-51
MsG0480018486.01	MsG0580028041.01	0.824711	6.961567e-54	6.215732e-51
MsG0480018486.01	MsG0580028159.01	-0.814227	1.715220e-51	1.144321e-48
MsG0480018486.01	MsG0580028302.01	0.843030	1.799954e-58	2.779875e-55
MsG0480018486.01	MsG0580029157.01	0.809065	2.274497e-50	1.322213e-47
MsG0480018486.01	MsG0580029177.01	-0.801517	8.673202e-49	4.150373e-46
MsG0480018486.01	MsG0580029218.01	0.809404	1.923901e-50	1.128605e-47
MsG0480018486.01	MsG0580029296.01	0.800586	1.344315e-48	6.283054e-46
MsG0480018486.01	MsG0580029696.01	0.831773	1.380674e-55	1.513466e-52
MsG0480018486.01	MsG0580029751.01	-0.802574	5.258716e-49	2.584881e-46
MsG0480018486.01	MsG0580030141.01	0.842479	2.521495e-58	3.828563e-55
MsG0480018486.01	MsG0580030179.01	0.802815	4.689943e-49	2.319679e-46
MsG0480018486.01	MsG0680031204.01	-0.813021	3.159546e-51	2.040083e-48
MsG0480018486.01	MsG0680031356.01	0.820009	8.602548e-53	6.726462e-50
MsG0480018486.01	MsG0680033645.01	0.816397	5.646668e-52	3.996706e-49
MsG0480018486.01	MsG0680034139.01	0.837896	3.965102e-57	5.223517e-54
MsG0480018486.01	MsG0680035584.01	-0.826853	2.159672e-54	2.049534e-51
MsG0480018486.01	MsG0780036553.01	0.813742	2.193689e-51	1.444426e-48
MsG0480018486.01	MsG0780037458.01	-0.807597	4.676581e-50	2.615423e-47
MsG0480018486.01	MsG0780038305.01	0.821734	3.449500e-53	2.829743e-50
MsG0480018486.01	MsG0780038647.01	0.804245	2.369731e-49	1.215719e-46
MsG0480018486.01	MsG0780038919.01	0.810543	1.093771e-50	6.611389e-48
MsG0480018486.01	MsG0780039287.01	-0.823019	1.735397e-53	1.476744e-50
MsG0480018486.01	MsG0780039536.01	0.814179	1.757755e-51	1.171181e-48
MsG0480018486.01	MsG0780039836.01	-0.802531	5.367184e-49	2.635319e-46
MsG0480018486.01	MsG0780040276.01	0.801937	7.113024e-49	3.440059e-46
MsG0480018486.01	MsG0780040554.01	0.824285	8.768448e-54	7.732241e-51
MsG0480018486.01	MsG0780040685.01	-0.809634	1.717023e-50	1.013480e-47
MsG0480018486.01	MsG0780040892.01	-0.813712	2.228248e-51	1.466045e-48
MsG0480018486.01	MsG0780040978.01	0.837474	5.088519e-57	6.617444e-54
MsG0480018486.01	MsG0780040990.01	0.813986	1.938922e-51	1.285083e-48
MsG0480018486.01	MsG0780041232.01	0.818263	2.147141e-52	1.599392e-49
MsG0480018486.01	MsG0780041436.01	0.861857	7.638206e-64	2.191737e-60
MsG0480018486.01	MsG0780041560.01	0.830443	2.927764e-55	3.084986e-52
MsG0480018486.01	MsG0780041591.01	0.825448	4.661615e-54	4.249876e-51
MsG0480018486.01	MsG0780041691.01	-0.810774	9.753974e-51	5.932630e-48
MsG0480018486.01	MsG0880042122.01	0.811940	5.443910e-51	3.414870e-48
MsG0480018486.01	MsG0880042312.01	0.804790	1.824469e-49	9.493161e-47
MsG0480018486.01	MsG0880042392.01	0.814003	1.921634e-51	1.274296e-48
MsG0480018486.01	MsG0880043472.01	0.822623	2.145467e-53	1.805421e-50
MsG0480018486.01	MsG0880043669.01	0.823372	1.435453e-53	1.233541e-50
MsG0480018486.01	MsG0880043882.01	0.836664	8.194763e-57	1.039671e-53
MsG0480018486.01	MsG0880044139.01	0.805307	1.421688e-49	7.496172e-47
MsG0480018486.01	MsG0880044317.01	-0.812097	5.031736e-51	3.169971e-48
MsG0480018486.01	MsG0880044356.01	0.805363	1.384360e-49	7.309864e-47
MsG0480018486.01	MsG0880044545.01	-0.802335	5.890730e-49	2.878092e-46
MsG0480018486.01	MsG0880044548.01	-0.826167	3.147018e-54	2.928619e-51
MsG0480018486.01	MsG0880044834.01	-0.809000	2.348902e-50	1.363009e-47
MsG0480018486.01	MsG0880044968.01	-0.830352	3.082137e-55	3.239299e-52
MsG0480018486.01	MsG0880045356.01	0.845304	4.416207e-59	7.327873e-56
MsG0480018486.01	MsG0880045553.01	0.818464	1.933718e-52	1.448623e-49
MsG0480018486.01	MsG0880045703.01	-0.816573	5.157911e-52	3.668340e-49
MsG0480018486.01	MsG0880045725.01	0.812479	4.153309e-51	2.643713e-48
MsG0480018486.01	MsG0880045761.01	-0.816473	5.432366e-52	3.852801e-49
MsG0480018486.01	MsG0880045968.01	-0.803821	2.903192e-49	1.473374e-46
MsG0480018486.01	MsG0880045991.01	0.827117	1.867454e-54	1.785991e-51
MsG0480018486.01	MsG0880046010.01	-0.853133	2.922229e-61	6.249093e-58
MsG0480018486.01	MsG0880046341.01	-0.814471	1.515177e-51	1.017628e-48
MsG0480018486.01	MsG0880047057.01	0.843125	1.697998e-58	2.630334e-55
MsG0480018486.01	MsG0880047090.01	0.824657	7.167222e-54	6.389461e-51
MsG0480018486.01	MsG0880047299.01	0.801800	7.590433e-49	3.658230e-46
MsG0480018486.01	MsG0880047450.01	0.829507	4.953325e-55	5.079596e-52
MsG0480018486.01	MsG0880047664.01	0.809159	2.172050e-50	1.265833e-47
MsG0380015370.01	MsG0480018486.01	0.819880	9.205162e-53	7.171672e-50
MsG0380015402.01	MsG0480018486.01	0.828397	9.198209e-55	9.132152e-52
MsG0380015513.01	MsG0480018486.01	0.818899	1.540346e-52	1.167867e-49
MsG0380015656.01	MsG0480018486.01	0.835168	1.963409e-56	2.381575e-53
MsG0380015828.01	MsG0480018486.01	-0.828528	8.548986e-55	8.519830e-52
MsG0380016031.01	MsG0480018486.01	0.816959	4.225590e-52	3.037473e-49
MsG0380016110.01	MsG0480018486.01	0.806799	6.902800e-50	3.781409e-47
MsG0380016250.01	MsG0480018486.01	0.878765	2.153925e-69	1.138282e-65
MsG0380016380.01	MsG0480018486.01	-0.866123	3.588815e-65	1.196273e-61
MsG0380016456.01	MsG0480018486.01	-0.820897	5.380832e-53	4.312366e-50
MsG0380016819.01	MsG0480018486.01	0.805011	1.640407e-49	8.583742e-47
MsG0380016934.01	MsG0480018486.01	-0.805225	1.479325e-49	7.783602e-47
MsG0380016935.01	MsG0480018486.01	-0.812829	3.482275e-51	2.236798e-48
MsG0380017030.01	MsG0480018486.01	0.804451	2.147227e-49	1.107456e-46
MsG0380017128.01	MsG0480018486.01	0.803560	3.288601e-49	1.657908e-46
MsG0380017156.01	MsG0480018486.01	0.806830	6.798640e-50	3.727437e-47
MsG0380017588.01	MsG0480018486.01	0.842537	2.433558e-58	3.701523e-55
MsG0380017594.01	MsG0480018486.01	0.801555	8.521269e-49	4.081377e-46
MsG0380017826.01	MsG0480018486.01	0.853153	2.884376e-61	6.172320e-58
MsG0380017967.01	MsG0480018486.01	0.820669	6.069440e-53	4.832981e-50
MsG0380018035.01	MsG0480018486.01	-0.824792	6.662314e-54	5.962291e-51
MsG0480018201.01	MsG0480018486.01	-0.813907	2.018143e-51	1.334773e-48
MsG0480018202.01	MsG0480018486.01	-0.820061	8.369563e-53	6.554141e-50
MsG0480018203.01	MsG0480018486.01	-0.818473	1.924783e-52	1.442237e-49
MsG0480018228.01	MsG0480018486.01	0.821667	3.573944e-53	2.926419e-50
MsG0480018362.01	MsG0480018486.01	0.837535	4.908998e-57	6.395851e-54
MsG0280006717.01	MsG0480018486.01	0.839040	2.009281e-57	2.741007e-54
MsG0280006851.01	MsG0480018486.01	0.819001	1.460314e-52	1.110355e-49
MsG0280007504.01	MsG0480018486.01	0.815353	9.653585e-52	6.640265e-49
MsG0280007653.01	MsG0480018486.01	-0.818070	2.374463e-52	1.759358e-49
MsG0280007786.01	MsG0480018486.01	0.821414	4.090055e-53	3.325216e-50
MsG0280009079.01	MsG0480018486.01	-0.814510	1.484857e-51	9.983312e-49
MsG0280009094.01	MsG0480018486.01	-0.828434	9.011977e-55	8.956741e-52
MsG0280009526.01	MsG0480018486.01	0.853798	1.882812e-61	4.117145e-58
MsG0280009742.01	MsG0480018486.01	-0.803266	3.784644e-49	1.893443e-46
MsG0280009864.01	MsG0480018486.01	-0.808299	3.315145e-50	1.888660e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018486.01.T01	MTR_4g013135	97.531	162	4	0	1	162	152	313	1.54e-113	325
MsG0480018486.01.T01	MTR_4g013090	92.593	162	12	0	1	162	152	313	4.02e-108	311
MsG0480018486.01.T01	MTR_4g013100	92.593	162	12	0	1	162	153	314	2.85e-107	309
MsG0480018486.01.T01	MTR_4g012960	90.123	162	16	0	1	162	149	310	1.81e-105	304
MsG0480018486.01.T01	MTR_2g101840	68.098	163	51	1	1	162	152	314	1.21e-74	226
MsG0480018486.01.T01	MTR_8g033390	49.383	162	82	0	1	162	162	323	2.45e-56	179
MsG0480018486.01.T01	MTR_8g033410	49.383	162	82	0	1	162	165	326	2.52e-53	172
MsG0480018486.01.T01	MTR_8g033400	48.148	162	84	0	1	162	172	333	4.72e-52	169
MsG0480018486.01.T01	MTR_7g075830	51.899	158	75	1	4	161	158	314	3.86e-50	163
MsG0480018486.01.T01	MTR_1g112510	31.638	177	101	4	2	158	174	350	4.56e-19	82.8
MsG0480018486.01.T01	MTR_6g007170	29.878	164	105	5	2	157	208	369	5.47e-14	68.6
MsG0480018486.01.T01	MTR_4g005880	29.545	176	106	4	2	162	236	408	1.48e-13	67.8
MsG0480018486.01.T01	MTR_3g005970	29.730	111	77	1	35	144	252	362	5.52e-13	65.9
MsG0480018486.01.T01	MTR_1g107480	29.240	171	111	5	1	162	202	371	8.24e-13	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018486.01.T01	AT1G79870	76.543	162	38	0	1	162	152	313	2.21e-88	261
MsG0480018486.01.T01	AT1G79870	76.543	162	38	0	1	162	133	294	2.23e-88	260
MsG0480018486.01.T01	AT1G12550	55.280	161	72	0	1	161	160	320	3.25e-60	189
MsG0480018486.01.T01	AT2G45630	47.853	163	84	1	1	162	176	338	5.26e-50	164
MsG0480018486.01.T01	AT1G68010	29.379	177	105	3	2	158	174	350	8.35e-18	79.3
MsG0480018486.01.T01	AT5G14780	30.909	165	106	4	2	159	180	343	3.56e-17	77.4
MsG0480018486.01.T01	AT1G68010	30.247	162	93	3	2	143	174	335	3.79e-17	77.4
MsG0480018486.01.T01	AT5G14780	30.909	165	106	4	2	159	192	355	3.84e-17	77.4
MsG0480018486.01.T01	AT5G14780	30.909	165	106	4	2	159	206	369	4.45e-17	77.4
MsG0480018486.01.T01	AT1G68010	29.213	178	105	4	2	158	174	351	3.89e-16	74.7
MsG0480018486.01.T01	AT1G17745	33.908	174	101	6	2	162	257	429	6.03e-16	74.7
MsG0480018486.01.T01	AT1G17745	32.370	173	105	4	2	162	230	402	6.34e-16	74.3
MsG0480018486.01.T01	AT5G28310	32.515	163	58	5	1	162	122	233	3.56e-15	70.5
MsG0480018486.01.T01	AT4G34200	29.825	171	110	5	1	162	208	377	2.85e-14	69.7
MsG0480018486.01.T01	AT1G72190	28.758	153	99	2	2	144	201	353	1.12e-13	67.8

Find 55 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGATAGTACTTGTATTT+TGG	0.175534	4:-5617282	None:intergenic
CATGTTCCCGAAGAACTATT+TGG	0.241347	4:+5617528	MsG0480018486.01.T01:CDS
TGCATTACTTGAAGGTCGTT+TGG	0.291318	4:+5617470	MsG0480018486.01.T01:CDS
TACCTCGGCCAATGTTAATT+AGG	0.297605	4:-5617419	None:intergenic
GCCATGGCCGACCTTCTTCT+TGG	0.315388	4:+5617609	MsG0480018486.01.T01:CDS
TTCTAGCCCAAATAGTTCTT+CGG	0.356251	4:-5617535	None:intergenic
TCTAGCCCAAATAGTTCTTC+GGG	0.361285	4:-5617534	None:intergenic
CGACCTTCTTCTTGGAAACT+TGG	0.365789	4:+5617617	MsG0480018486.01.T01:CDS
GCATTACTTGAAGGTCGTTT+GGG	0.382800	4:+5617471	MsG0480018486.01.T01:CDS
AACTTGGAGGCTCATTTCCT+TGG	0.395330	4:+5617633	MsG0480018486.01.T01:CDS
ATTAAAACCTTCAGCTCTCT+TGG	0.401991	4:-5617220	None:intergenic
CCTTCTTCTTGGAAACTTGG+AGG	0.417287	4:+5617620	MsG0480018486.01.T01:CDS
ATGTTCCCGAAGAACTATTT+GGG	0.421570	4:+5617529	MsG0480018486.01.T01:CDS
CTTTGGAGTTCTAGAATAGT+AGG	0.425937	4:-5617253	None:intergenic
AAACTCATCACATCATCAAC+CGG	0.440972	4:+5617364	MsG0480018486.01.T01:CDS
AGCATCCAACTGCGACATAC+TGG	0.457202	4:+5617317	MsG0480018486.01.T01:CDS
CTGGTCTCTGCATTACTTGA+AGG	0.461779	4:+5617462	MsG0480018486.01.T01:CDS
GAAGGTCGTTTGGGTGGTGC+TGG	0.462451	4:+5617480	MsG0480018486.01.T01:CDS
AAAGCCACTGTTAACTCCCT+TGG	0.464385	4:+5617656	MsG0480018486.01.T01:CDS
TGATGAGTTTCCTCTGTAAG+AGG	0.469038	4:-5617351	None:intergenic
ATTATTGGAATGGGAAGGAT+TGG	0.483559	4:+5617186	None:intergenic
CGGGAGGTCATTAATGCACT+TGG	0.501315	4:+5617384	MsG0480018486.01.T01:CDS
ATGTTAATTAGGACACCCTT+CGG	0.518527	4:-5617408	None:intergenic
CATTAATGCACTTGGTCCGA+AGG	0.522710	4:+5617392	MsG0480018486.01.T01:CDS
GCAGTTGCCAAGAGAGCTGA+AGG	0.536835	4:+5617213	MsG0480018486.01.T01:CDS
TTATTGCCTCATGTTGGAAG+CGG	0.540920	4:+5617567	MsG0480018486.01.T01:CDS
CCTCCAAGTTTCCAAGAAGA+AGG	0.547234	4:-5617620	None:intergenic
TCCAAGAAGAAGGTCGGCCA+TGG	0.548832	4:-5617610	None:intergenic
GATGCTAACTCAACAAGACT+TGG	0.554749	4:-5617300	None:intergenic
GGTAGAAACTCGAGCTGCCA+TGG	0.556384	4:+5617593	MsG0480018486.01.T01:CDS
GAGTTAACAGTGGCTTTCCA+AGG	0.557323	4:-5617650	None:intergenic
GCATGTTGATGAGCCAGAGC+TGG	0.562230	4:+5617443	MsG0480018486.01.T01:CDS
GTCCTAATTAACATTGGCCG+AGG	0.565769	4:+5617417	MsG0480018486.01.T01:CDS
TGTTGCCTGCCCTCTTACAG+AGG	0.566261	4:+5617341	MsG0480018486.01.T01:CDS
AGTTTCCTCTGTAAGAGGGC+AGG	0.567739	4:-5617346	None:intergenic
AGTAATGCAGAGACCAGCTC+TGG	0.569099	4:-5617456	None:intergenic
CAAGTGCATTAATGACCTCC+CGG	0.577512	4:-5617383	None:intergenic
TTGGCATTATTGGAATGGGA+AGG	0.585206	4:+5617181	None:intergenic
CTATTCTAGAACTCCAAAGC+AGG	0.594716	4:+5617257	MsG0480018486.01.T01:CDS
GCCTCATGTTGGAAGCGGCA+CGG	0.602877	4:+5617572	MsG0480018486.01.T01:CDS
ATTAATGCACTTGGTCCGAA+GGG	0.608941	4:+5617393	MsG0480018486.01.T01:CDS
AACAACCAGTATGTCGCAGT+TGG	0.611894	4:-5617322	None:intergenic
CGGCATGCAGATTAAACCAA+GGG	0.612509	4:-5617672	None:intergenic
AATAGTTCTTCGGGAACATG+AGG	0.622864	4:-5617525	None:intergenic
AAGGGTGTCCTAATTAACAT+TGG	0.623755	4:+5617411	MsG0480018486.01.T01:CDS
ACCGTGCCGCTTCCAACATG+AGG	0.623796	4:-5617573	None:intergenic
CAAGTTTCCAAGAAGAAGGT+CGG	0.631558	4:-5617616	None:intergenic
GTTGTCTTATTGCCTCATGT+TGG	0.632321	4:+5617561	MsG0480018486.01.T01:CDS
GATGAGTTTCCTCTGTAAGA+GGG	0.642427	4:-5617350	None:intergenic
TTACTTGAAGGTCGTTTGGG+TGG	0.644249	4:+5617474	MsG0480018486.01.T01:CDS
AACTCATCACATCATCAACC+GGG	0.655089	4:+5617365	MsG0480018486.01.T01:CDS
GCGGCATGCAGATTAAACCA+AGG	0.659732	4:-5617673	None:intergenic
TAAACCAAGGGAGTTAACAG+TGG	0.668491	4:-5617660	None:intergenic
GCTCATCAACATGCTTACCT+CGG	0.690772	4:-5617434	None:intergenic
TCATCACATCATCAACCGGG+AGG	0.750770	4:+5617368	MsG0480018486.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	CTTGGATAGTACTTGTATTT+TGG	-	Chr4:5617285-5617304	None:intergenic	30.0%
	AAACTCATCACATCATCAAC+CGG	+	Chr4:5617364-5617383	MsG0480018486.01.T01:CDS	35.0%
	ATGTTAATTAGGACACCCTT+CGG	-	Chr4:5617411-5617430	None:intergenic	35.0%
	ATGTTCCCGAAGAACTATTT+GGG	+	Chr4:5617529-5617548	MsG0480018486.01.T01:CDS	35.0%
	ATTAAAACCTTCAGCTCTCT+TGG	-	Chr4:5617223-5617242	None:intergenic	35.0%
	TTCTAGCCCAAATAGTTCTT+CGG	-	Chr4:5617538-5617557	None:intergenic	35.0%
!!	AAGGGTGTCCTAATTAACAT+TGG	+	Chr4:5617411-5617430	MsG0480018486.01.T01:CDS	35.0%
!!	CTTTGGAGTTCTAGAATAGT+AGG	-	Chr4:5617256-5617275	None:intergenic	35.0%
!!!	TTGTATTTTGGTTCCTGCTT+TGG	-	Chr4:5617273-5617292	None:intergenic	35.0%
	AACTCATCACATCATCAACC+GGG	+	Chr4:5617365-5617384	MsG0480018486.01.T01:CDS	40.0%
	AATAGTTCTTCGGGAACATG+AGG	-	Chr4:5617528-5617547	None:intergenic	40.0%
	ATTAATGCACTTGGTCCGAA+GGG	+	Chr4:5617393-5617412	MsG0480018486.01.T01:CDS	40.0%
	CAAGTTTCCAAGAAGAAGGT+CGG	-	Chr4:5617619-5617638	None:intergenic	40.0%
	CATGTTCCCGAAGAACTATT+TGG	+	Chr4:5617528-5617547	MsG0480018486.01.T01:CDS	40.0%
	GATGAGTTTCCTCTGTAAGA+GGG	-	Chr4:5617353-5617372	None:intergenic	40.0%
	GATGCTAACTCAACAAGACT+TGG	-	Chr4:5617303-5617322	None:intergenic	40.0%
	GCATTACTTGAAGGTCGTTT+GGG	+	Chr4:5617471-5617490	MsG0480018486.01.T01:CDS	40.0%
	TAAACCAAGGGAGTTAACAG+TGG	-	Chr4:5617663-5617682	None:intergenic	40.0%
	TACCTCGGCCAATGTTAATT+AGG	-	Chr4:5617422-5617441	None:intergenic	40.0%
	TCTAGCCCAAATAGTTCTTC+GGG	-	Chr4:5617537-5617556	None:intergenic	40.0%
	TGATGAGTTTCCTCTGTAAG+AGG	-	Chr4:5617354-5617373	None:intergenic	40.0%
	TGCATTACTTGAAGGTCGTT+TGG	+	Chr4:5617470-5617489	MsG0480018486.01.T01:CDS	40.0%
	TTATTGCCTCATGTTGGAAG+CGG	+	Chr4:5617567-5617586	MsG0480018486.01.T01:CDS	40.0%
!	GTTGTCTTATTGCCTCATGT+TGG	+	Chr4:5617561-5617580	MsG0480018486.01.T01:CDS	40.0%
!!	CTATTCTAGAACTCCAAAGC+AGG	+	Chr4:5617257-5617276	MsG0480018486.01.T01:CDS	40.0%
	AAAGCCACTGTTAACTCCCT+TGG	+	Chr4:5617656-5617675	MsG0480018486.01.T01:CDS	45.0%
	AACAACCAGTATGTCGCAGT+TGG	-	Chr4:5617325-5617344	None:intergenic	45.0%
	AACTTGGAGGCTCATTTCCT+TGG	+	Chr4:5617633-5617652	MsG0480018486.01.T01:CDS	45.0%
	CAAGTGCATTAATGACCTCC+CGG	-	Chr4:5617386-5617405	None:intergenic	45.0%
	CATTAATGCACTTGGTCCGA+AGG	+	Chr4:5617392-5617411	MsG0480018486.01.T01:CDS	45.0%
	CCTCCAAGTTTCCAAGAAGA+AGG	-	Chr4:5617623-5617642	None:intergenic	45.0%
	CCTTCTTCTTGGAAACTTGG+AGG	+	Chr4:5617620-5617639	MsG0480018486.01.T01:CDS	45.0%
	CGACCTTCTTCTTGGAAACT+TGG	+	Chr4:5617617-5617636	MsG0480018486.01.T01:CDS	45.0%
	CTGGTCTCTGCATTACTTGA+AGG	+	Chr4:5617462-5617481	MsG0480018486.01.T01:CDS	45.0%
	GAGTTAACAGTGGCTTTCCA+AGG	-	Chr4:5617653-5617672	None:intergenic	45.0%
	GCTCATCAACATGCTTACCT+CGG	-	Chr4:5617437-5617456	None:intergenic	45.0%
	GTCCTAATTAACATTGGCCG+AGG	+	Chr4:5617417-5617436	MsG0480018486.01.T01:CDS	45.0%
	TTACTTGAAGGTCGTTTGGG+TGG	+	Chr4:5617474-5617493	MsG0480018486.01.T01:CDS	45.0%
	AGCATCCAACTGCGACATAC+TGG	+	Chr4:5617317-5617336	MsG0480018486.01.T01:CDS	50.0%
	AGTAATGCAGAGACCAGCTC+TGG	-	Chr4:5617459-5617478	None:intergenic	50.0%
	AGTTTCCTCTGTAAGAGGGC+AGG	-	Chr4:5617349-5617368	None:intergenic	50.0%
	CGGGAGGTCATTAATGCACT+TGG	+	Chr4:5617384-5617403	MsG0480018486.01.T01:CDS	50.0%
	TCATCACATCATCAACCGGG+AGG	+	Chr4:5617368-5617387	MsG0480018486.01.T01:CDS	50.0%
	GCAGTTGCCAAGAGAGCTGA+AGG	+	Chr4:5617213-5617232	MsG0480018486.01.T01:CDS	55.0%
	GGTAGAAACTCGAGCTGCCA+TGG	+	Chr4:5617593-5617612	MsG0480018486.01.T01:CDS	55.0%
	TCCAAGAAGAAGGTCGGCCA+TGG	-	Chr4:5617613-5617632	None:intergenic	55.0%
	TGTTGCCTGCCCTCTTACAG+AGG	+	Chr4:5617341-5617360	MsG0480018486.01.T01:CDS	55.0%
!	GCATGTTGATGAGCCAGAGC+TGG	+	Chr4:5617443-5617462	MsG0480018486.01.T01:CDS	55.0%
	GAAGGTCGTTTGGGTGGTGC+TGG	+	Chr4:5617480-5617499	MsG0480018486.01.T01:CDS	60.0%
	GCCATGGCCGACCTTCTTCT+TGG	+	Chr4:5617609-5617628	MsG0480018486.01.T01:CDS	60.0%
	GCCTCATGTTGGAAGCGGCA+CGG	+	Chr4:5617572-5617591	MsG0480018486.01.T01:CDS	60.0%
!!	ACCGTGCCGCTTCCAACATG+AGG	-	Chr4:5617576-5617595	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	5617195	5617683	5617195	ID=MsG0480018486.01;Name=MsG0480018486.01
Chr4	mRNA	5617195	5617683	5617195	ID=MsG0480018486.01.T01;Parent=MsG0480018486.01;Name=MsG0480018486.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|162
Chr4	exon	5617195	5617683	5617195	ID=MsG0480018486.01.T01:exon:1976;Parent=MsG0480018486.01.T01
Chr4	CDS	5617195	5617683	5617195	ID=MsG0480018486.01.T01:cds;Parent=MsG0480018486.01.T01

Gene Sequence

>MsG0480018486.01.T01

ATGGGAAGGATTGGCACAGCAGTTGCCAAGAGAGCTGAAGGTTTTAATTGTTCAATATCCTACTATTCTAGAACTCCAAAGCAGGAACCAAAATACAAGTACTATCCAAGTCTTGTTGAGTTAGCATCCAACTGCGACATACTGGTTGTTGCCTGCCCTCTTACAGAGGAAACTCATCACATCATCAACCGGGAGGTCATTAATGCACTTGGTCCGAAGGGTGTCCTAATTAACATTGGCCGAGGTAAGCATGTTGATGAGCCAGAGCTGGTCTCTGCATTACTTGAAGGTCGTTTGGGTGGTGCTGGACTTGATGTGTATGAAAACGAGCCTCATGTTCCCGAAGAACTATTTGGGCTAGAAAATGTTGTCTTATTGCCTCATGTTGGAAGCGGCACGGTAGAAACTCGAGCTGCCATGGCCGACCTTCTTCTTGGAAACTTGGAGGCTCATTTCCTTGGAAAGCCACTGTTAACTCCCTTGGTTTAA

Protein sequence

>MsG0480018486.01.T01

MGRIGTAVAKRAEGFNCSISYYSRTPKQEPKYKYYPSLVELASNCDILVVACPLTEETHHIINREVINALGPKGVLINIGRGKHVDEPELVSALLEGRLGGAGLDVYENEPHVPEELFGLENVVLLPHVGSGTVETRAAMADLLLGNLEAHFLGKPLLTPLV*