AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0897390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0897390 MtrunA17_Chr6g0483131 97.008 869 23 2 1 866 1 869 0.0 1728
Msa0897390 MtrunA17_Chr8g0392621 67.423 881 252 18 7 866 25 891 0.0 1080
Msa0897390 MtrunA17_Chr1g0150791 30.471 361 216 12 78 419 44 388 9.14e-34 140
Msa0897390 MtrunA17_Chr1g0150791 27.338 417 217 12 511 863 667 1061 1.89e-31 132
Msa0897390 MtrunA17_Chr4g0070741 26.132 486 211 17 515 863 593 1067 1.16e-32 136
Msa0897390 MtrunA17_Chr4g0070741 27.451 408 246 16 105 472 50 447 9.30e-24 108
Msa0897390 MtrunA17_Chr2g0300211 34.078 179 115 1 100 278 69 244 2.53e-29 126
Msa0897390 MtrunA17_Chr2g0300211 29.189 185 117 4 516 691 704 883 1.03e-17 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0897390 AT1G42550.1 51.457 892 356 22 1 865 1 842 0.0 797
Msa0897390 AT5G20610.1 29.333 300 183 9 113 394 58 346 8.46e-30 128
Msa0897390 AT5G20610.1 33.333 195 123 3 511 701 701 892 6.62e-22 102
Msa0897390 AT5G26160.3 33.951 162 103 2 117 277 72 230 2.71e-25 113
Msa0897390 AT5G26160.3 23.884 448 283 15 445 847 508 942 4.08e-18 90.1
Msa0897390 AT5G26160.2 33.951 162 103 2 117 277 72 230 2.76e-25 113
Msa0897390 AT5G26160.2 23.778 450 285 15 443 847 506 942 3.49e-18 90.5
Msa0897390 AT5G26160.1 33.951 162 103 2 117 277 72 230 2.76e-25 113
Msa0897390 AT5G26160.1 23.778 450 285 15 443 847 506 942 3.49e-18 90.5

Find 148 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAACTCTAATCCATTTA+AGG 0.128652 6_1:-89337179 None:intergenic
AAAGGATTTCAACAGGAATT+TGG 0.166916 6_1:+89337422 Msa0897390:CDS
TCATTTCTGTTTGTGATTCT+TGG 0.170020 6_1:-89336446 None:intergenic
GGAAAACATGCATTGGTAAA+AGG 0.216506 6_1:+89337982 Msa0897390:CDS
TTTGGAATTGGAAACCTATT+AGG 0.219662 6_1:+89335838 Msa0897390:CDS
ATGCAATGGTTGATTGAATA+TGG 0.219889 6_1:+89337937 Msa0897390:CDS
ACATCACAAGACCCCTTAAA+TGG 0.244170 6_1:+89337166 Msa0897390:CDS
CCTGACCTTGGAAAAGGTTT+AGG 0.269757 6_1:+89337025 Msa0897390:CDS
GATGCTAAAGAGCTTGATTT+TGG 0.270366 6_1:+89336149 Msa0897390:CDS
ATTAGGGCTATTTCTCATAT+TGG 0.274179 6_1:+89335855 Msa0897390:CDS
AATGCAGAAAATTGAGTTCA+TGG 0.297933 6_1:+89337492 Msa0897390:CDS
AATTTGAGCCAAGACCATTT+TGG 0.305051 6_1:+89336108 Msa0897390:CDS
TTCACTTTCTAAGCAGATAA+AGG 0.307285 6_1:+89336781 Msa0897390:CDS
ATTAGAGTTGTTTCAGAAAC+TGG 0.313646 6_1:+89337189 Msa0897390:CDS
GACATTTGCATTGCTAGCTT+TGG 0.317570 6_1:-89337127 None:intergenic
TTTGATGAAAGAACAAATTC+AGG 0.324946 6_1:+89335798 Msa0897390:CDS
ACAAAAGGAGTTGAAGTTCT+TGG 0.332450 6_1:-89335615 None:intergenic
TTCTAGCTGTTGTGTGTGAT+TGG 0.336318 6_1:-89335572 None:intergenic
TCATTATCATCTTTAGTAGA+TGG 0.343475 6_1:-89335639 None:intergenic
TTACCTATCAGTTCATCTAT+TGG 0.347014 6_1:-89337259 None:intergenic
TTGGAATTGGAAACCTATTA+GGG 0.357658 6_1:+89335839 Msa0897390:CDS
TCCTTGACAATTTCACTTGA+AGG 0.360120 6_1:-89336713 None:intergenic
TATGAATGATGAACTAGATT+TGG 0.366817 6_1:-89336542 None:intergenic
CTGTTTGTGATTCTTGGACT+AGG 0.370563 6_1:-89336440 None:intergenic
CTTTAGCATCAACTGCAAAA+AGG 0.371050 6_1:-89336136 None:intergenic
ACAAGAAAGGGATTTGGAAT+TGG 0.377769 6_1:+89335826 Msa0897390:CDS
TGGTTGATTGAATATGGATT+AGG 0.377800 6_1:+89337943 Msa0897390:CDS
TTGCTTTCTGATTGAGTTGA+GGG 0.381185 6_1:-89335771 None:intergenic
ATGGCGAATGCAATGAGTTT+AGG 0.385047 6_1:+89337391 Msa0897390:CDS
GGTGGAGGACCTTGATCTTC+CGG 0.385688 6_1:+89336601 Msa0897390:CDS
TCAACAAGTTTATTAGTAGA+TGG 0.386259 6_1:-89336566 None:intergenic
ATATGAGAAATAGCCCTAAT+AGG 0.388608 6_1:-89335852 None:intergenic
TTAGAGCCTCTAGTTCTTCA+AGG 0.402203 6_1:-89335536 None:intergenic
GTGACAACAAGAAAGGGATT+TGG 0.407203 6_1:+89335820 Msa0897390:CDS
AAGTGCTGCACGGATAGTTT+CGG 0.411148 6_1:+89337357 Msa0897390:CDS
TTGACTGAAGAAACTTCAAA+TGG 0.412655 6_1:-89337562 None:intergenic
GTATGAATTAACACCATCAT+AGG 0.422907 6_1:-89337763 None:intergenic
CAATTGATTCTTGAATCAAC+TGG 0.423806 6_1:-89336193 None:intergenic
CGAGCTACATAATTGTCTAA+AGG 0.424685 6_1:-89337094 None:intergenic
AACAACTCTAATCCATTTAA+GGG 0.424877 6_1:-89337178 None:intergenic
CTTTAAACAAGTTTAACATC+TGG 0.426101 6_1:-89338072 None:intergenic
GAAGTTTCTTCAGTCAAAGA+AGG 0.427467 6_1:+89337568 Msa0897390:CDS
AGAATTTGAAGCCTAGTAGT+AGG 0.427655 6_1:+89336360 Msa0897390:CDS
CCTTGATCTTCCGGAGTTCG+AGG 0.428276 6_1:+89336610 Msa0897390:CDS
CTGCTATTTCACTAGAGGAT+TGG 0.429356 6_1:+89337617 Msa0897390:CDS
TTTGCTATGTTCTCCCATCA+TGG 0.429377 6_1:-89336813 None:intergenic
CTTAATCCATTCATTGATGA+AGG 0.431366 6_1:-89335933 None:intergenic
TCTCTTCCTTCATCAATGAA+TGG 0.433021 6_1:+89335927 Msa0897390:CDS
GAAAACATGCATTGGTAAAA+GGG 0.433928 6_1:+89337983 Msa0897390:CDS
GAATATGGATTAGGAAAGGC+AGG 0.436150 6_1:+89337952 Msa0897390:CDS
TATTGCAATCAACAAGGTAA+TGG 0.448877 6_1:+89336074 Msa0897390:CDS
TCTTGTGATGTTAACACAAA+AGG 0.450553 6_1:-89337154 None:intergenic
TTAGGAAAGGCAGGGAAGAA+AGG 0.450861 6_1:+89337961 Msa0897390:CDS
AAAAGCTAAAGGAGGAGAGT+TGG 0.451150 6_1:+89336274 Msa0897390:CDS
GAAACTAGGATTTCAAATCA+TGG 0.455905 6_1:+89336301 Msa0897390:CDS
GGAGAGTTGGTTATGAAACT+AGG 0.456729 6_1:+89336287 Msa0897390:CDS
TATCTTCCTGACCTTGGAAA+AGG 0.459169 6_1:+89337019 Msa0897390:CDS
AAACTAGGATTTCAAATCAT+GGG 0.463706 6_1:+89336302 Msa0897390:CDS
TTGAACATTGGAATTTCTCT+TGG 0.465355 6_1:-89335511 None:intergenic
AGACAAGAAAGGATTTCAAC+AGG 0.470703 6_1:+89337415 Msa0897390:CDS
TGACACGGAATCACAACGAT+TGG 0.471569 6_1:+89336841 Msa0897390:CDS
TGCAATAAACATGACACCTT+AGG 0.472806 6_1:-89336058 None:intergenic
GTCGCATGTCCTTATCTCCT+TGG 0.473873 6_1:+89335709 Msa0897390:CDS
GAGTTCGAGGTTGTCGATAG+AGG 0.476589 6_1:+89336623 Msa0897390:CDS
CTGTTCAAACAATGCCATCA+AGG 0.476825 6_1:+89335997 Msa0897390:CDS
AGGCATGCTAAACGATGTCT+TGG 0.478557 6_1:-89336420 None:intergenic
TTTAAGGTGAGGAGTGGCAA+TGG 0.480178 6_1:+89337871 Msa0897390:CDS
GCACCTTGAGAAACCCTTGA+TGG 0.482497 6_1:-89336011 None:intergenic
GCAAAGGTGGAATTTCAGAT+TGG 0.482762 6_1:-89336940 None:intergenic
CTATCGACAACCTCGAACTC+CGG 0.483620 6_1:-89336620 None:intergenic
TTTCAAATCATGGGGAAAGA+TGG 0.487596 6_1:+89336311 Msa0897390:CDS
AATTCAGGTGACAACAAGAA+AGG 0.489798 6_1:+89335813 Msa0897390:CDS
GCAATGGAAGGAAGAATGCT+TGG 0.491920 6_1:+89337887 Msa0897390:CDS
AGGTATATCCAAAATGGTCT+TGG 0.495736 6_1:-89336116 None:intergenic
ATCGGCAAGGAAATCGAGTT+AGG 0.500647 6_1:+89336222 Msa0897390:CDS
TTCTTCAAGGAGTTGAACAT+TGG 0.501747 6_1:-89335523 None:intergenic
ACAAATCAAGAAGATGCAAC+TGG 0.502022 6_1:+89335741 Msa0897390:CDS
CAAGTGTATCTTCCTGACCT+TGG 0.504483 6_1:+89337013 Msa0897390:CDS
AGAAAGAAAGAGAATAAAGA+TGG 0.506391 6_1:+89335972 Msa0897390:CDS
AGTTTGCAAGGAAAAGCTAA+AGG 0.507002 6_1:+89336263 Msa0897390:CDS
ATGCCAATAGATGAACTGAT+AGG 0.507132 6_1:+89337256 Msa0897390:CDS
ATTCAGGTGACAACAAGAAA+GGG 0.508556 6_1:+89335814 Msa0897390:CDS
ATTGCTTTCTGATTGAGTTG+AGG 0.513069 6_1:-89335772 None:intergenic
TCTTTAGTAGATGGAACAAA+AGG 0.513334 6_1:-89335630 None:intergenic
GAAGAGAAGAAAGAAGATGA+AGG 0.517230 6_1:+89336656 Msa0897390:CDS
CTGTTGTGTGTGATTGGTAA+AGG 0.525386 6_1:-89335566 None:intergenic
TGAGTTTAGGAAGACAAGAA+AGG 0.525668 6_1:+89337404 Msa0897390:CDS
GAAACAAGCTTTAGTTTGCA+AGG 0.526995 6_1:+89336251 Msa0897390:CDS
AGGTGAGGAGTGGCAATGGA+AGG 0.527017 6_1:+89337875 Msa0897390:CDS
TGTTGTGTGTGATTGGTAAA+GGG 0.529701 6_1:-89335565 None:intergenic
GAGCATTTCATCAAGAATCA+TGG 0.531039 6_1:+89338020 Msa0897390:CDS
TCACAAACAGAAATGATGCT+TGG 0.533449 6_1:+89336453 Msa0897390:CDS
ATGAAGATGATGAGGAAAAG+AGG 0.538272 6_1:+89337818 Msa0897390:CDS
ACTTGTTGATGACAAAGAAA+AGG 0.539977 6_1:+89336580 Msa0897390:CDS
CAATGGAAGGAAGAATGCTT+GGG 0.540671 6_1:+89337888 Msa0897390:CDS
GAAGAAAGGAAAACATGCAT+TGG 0.544146 6_1:+89337975 Msa0897390:CDS
GAGTTCTGCTATTTCACTAG+AGG 0.544818 6_1:+89337612 Msa0897390:CDS
AAGTTTCTTCAGTCAAAGAA+GGG 0.545160 6_1:+89337569 Msa0897390:CDS
CGAAGATATGAAGCAGTTGG+AGG 0.545991 6_1:+89337739 Msa0897390:CDS
AAAGGCTCTTGAATCCATGA+TGG 0.546098 6_1:+89336799 Msa0897390:CDS
TAAAAGGGCAAGATTTGTTG+TGG 0.547889 6_1:+89337998 Msa0897390:CDS
CCTCGAACTCCGGAAGATCA+AGG 0.553543 6_1:-89336610 None:intergenic
CAAGAATCATGGCTGATATG+TGG 0.554668 6_1:+89338031 Msa0897390:CDS
ACAACAAATGTGGACACAAA+GGG 0.555483 6_1:+89337784 Msa0897390:CDS
TGGAAAAGGTTTAGGTTGTG+TGG 0.555889 6_1:+89337033 Msa0897390:CDS
AAGAAAGAAGATGAAGGAGA+AGG 0.560474 6_1:+89336662 Msa0897390:CDS
TGTGTGGTTCAAACAAGAGA+TGG 0.571908 6_1:+89337049 Msa0897390:CDS
ATAGCTTCTGCTATCATACA+AGG 0.577908 6_1:+89337310 Msa0897390:CDS
ACTGCTTCATATCTTCGTAT+CGG 0.578152 6_1:-89337733 None:intergenic
AAGGAAATCGAGTTAGGCAA+TGG 0.578366 6_1:+89336228 Msa0897390:CDS
TCTGCTAATCTTCTCTGTGA+AGG 0.578831 6_1:-89336479 None:intergenic
ATACAAGGTAGAAACAAAGA+AGG 0.578846 6_1:+89337325 Msa0897390:CDS
CAAAGTAAGTAGCATGCATG+TGG 0.579362 6_1:+89337843 Msa0897390:CDS
CATCAATGAGAAAATTTGAG+AGG 0.579418 6_1:-89337236 None:intergenic
GAAGCATTGAAAATTCAAGC+TGG 0.579757 6_1:+89337520 Msa0897390:CDS
ATACGAAGATATGAAGCAGT+TGG 0.582036 6_1:+89337736 Msa0897390:CDS
AAAGGCTAACTTCAATGCAA+TGG 0.582504 6_1:+89337923 Msa0897390:CDS
GTTAATTCATACAACAAATG+TGG 0.583537 6_1:+89337774 Msa0897390:CDS
TACAACAAATGTGGACACAA+AGG 0.583821 6_1:+89337783 Msa0897390:CDS
TGTTCAAACAATGCCATCAA+GGG 0.586202 6_1:+89335998 Msa0897390:CDS
GATTGAATATGGATTAGGAA+AGG 0.591896 6_1:+89337948 Msa0897390:CDS
AGGAAATCGAGTTAGGCAAT+GGG 0.594631 6_1:+89336229 Msa0897390:CDS
GATGATAATTCTTCATCATG+TGG 0.594745 6_1:+89336977 Msa0897390:CDS
CAAATCATGGGGAAAGATGG+AGG 0.596074 6_1:+89336314 Msa0897390:CDS
TCATGTTCTTCAAGATGCAA+AGG 0.596262 6_1:-89336956 None:intergenic
TGTTGATGACAAAGAAAAGG+TGG 0.597279 6_1:+89336583 Msa0897390:CDS
ACCTTCAAGTGAAATTGTCA+AGG 0.601896 6_1:+89336712 Msa0897390:CDS
CATGTTTATTGCAATCAACA+AGG 0.603699 6_1:+89336068 Msa0897390:CDS
AAGGCTCTTGAATCCATGAT+GGG 0.604383 6_1:+89336800 Msa0897390:CDS
CTTGGGAGAGTGAGAAACAA+AGG 0.606419 6_1:+89337905 Msa0897390:CDS
AGAGTTTCTTCATATGCTTG+AGG 0.610639 6_1:+89336889 Msa0897390:CDS
TGTTCTTCAAGATGCAAAGG+TGG 0.611191 6_1:-89336953 None:intergenic
AACTAGGATTTCAAATCATG+GGG 0.622865 6_1:+89336303 Msa0897390:CDS
TCAACTCCTTGAAGAACTAG+AGG 0.628377 6_1:+89335530 Msa0897390:CDS
GTCGAGCGAATGAAGATGTG+AGG 0.633499 6_1:-89336391 None:intergenic
AGCAGTTGGAGGACCTATGA+TGG 0.635675 6_1:+89337750 Msa0897390:CDS
TTGCAAGGAAAAGCTAAAGG+AGG 0.636808 6_1:+89336266 Msa0897390:CDS
ACAACTCTAATCCATTTAAG+GGG 0.637198 6_1:-89337177 None:intergenic
AAGGACATGCGACGCGACCG+AGG 0.637757 6_1:-89335699 None:intergenic
AGTTTCGGCATTGAAAGACA+TGG 0.642413 6_1:+89337372 Msa0897390:CDS
AAAGTAAGTAGCATGCATGT+GGG 0.642780 6_1:+89337844 Msa0897390:CDS
ATGCCATCAAGGGTTTCTCA+AGG 0.644801 6_1:+89336008 Msa0897390:CDS
GAGCAAGTTCAAGTGCTGCA+CGG 0.645893 6_1:+89337347 Msa0897390:CDS
GTGGTTCAAACAAGAGATGG+AGG 0.648990 6_1:+89337052 Msa0897390:CDS
TGATGACAAAGAAAAGGTGG+AGG 0.650584 6_1:+89336586 Msa0897390:CDS
TGATCATGATGAAGATGATG+AGG 0.656905 6_1:+89337810 Msa0897390:CDS
GTAAGTAGCATGCATGTGGG+AGG 0.667243 6_1:+89337847 Msa0897390:CDS
AATATGGATTAGGAAAGGCA+GGG 0.686442 6_1:+89337953 Msa0897390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATCAATTGATAAAAAT+CGG + chr6_1:89336204-89336223 Msa0897390:CDS 15.0%
! TCATTATCATCTTTAGTAGA+TGG - chr6_1:89335642-89335661 None:intergenic 25.0%
!!! TGATTTGTTTTTGATTTCCA+AGG - chr6_1:89335729-89335748 None:intergenic 25.0%
! TTTGATGAAAGAACAAATTC+AGG + chr6_1:89335798-89335817 Msa0897390:CDS 25.0%
! AGAAAGAAAGAGAATAAAGA+TGG + chr6_1:89335972-89335991 Msa0897390:CDS 25.0%
! AAACTAGGATTTCAAATCAT+GGG + chr6_1:89336302-89336321 Msa0897390:CDS 25.0%
! TATGAATGATGAACTAGATT+TGG - chr6_1:89336545-89336564 None:intergenic 25.0%
! TCAACAAGTTTATTAGTAGA+TGG - chr6_1:89336569-89336588 None:intergenic 25.0%
! AACAACTCTAATCCATTTAA+GGG - chr6_1:89337181-89337200 None:intergenic 25.0%
! AAACAACTCTAATCCATTTA+AGG - chr6_1:89337182-89337201 None:intergenic 25.0%
! GTTAATTCATACAACAAATG+TGG + chr6_1:89337774-89337793 Msa0897390:CDS 25.0%
TTGAACATTGGAATTTCTCT+TGG - chr6_1:89335514-89335533 None:intergenic 30.0%
TCTTTAGTAGATGGAACAAA+AGG - chr6_1:89335633-89335652 None:intergenic 30.0%
!!! TTTTGATTTCCAAGGAGATA+AGG - chr6_1:89335721-89335740 None:intergenic 30.0%
! TTTGGAATTGGAAACCTATT+AGG + chr6_1:89335838-89335857 Msa0897390:CDS 30.0%
TTGGAATTGGAAACCTATTA+GGG + chr6_1:89335839-89335858 Msa0897390:CDS 30.0%
ATATGAGAAATAGCCCTAAT+AGG - chr6_1:89335855-89335874 None:intergenic 30.0%
!! ATTAGGGCTATTTCTCATAT+TGG + chr6_1:89335855-89335874 Msa0897390:CDS 30.0%
CTTAATCCATTCATTGATGA+AGG - chr6_1:89335936-89335955 None:intergenic 30.0%
! TTGAAGAAACACTTTTCCTA+AGG + chr6_1:89336042-89336061 Msa0897390:CDS 30.0%
CATGTTTATTGCAATCAACA+AGG + chr6_1:89336068-89336087 Msa0897390:CDS 30.0%
TATTGCAATCAACAAGGTAA+TGG + chr6_1:89336074-89336093 Msa0897390:CDS 30.0%
! GCAAAAAGGTATATCCAAAA+TGG - chr6_1:89336125-89336144 None:intergenic 30.0%
! CAATTGATTCTTGAATCAAC+TGG - chr6_1:89336196-89336215 None:intergenic 30.0%
TCAATTGATAAAAATCGGCA+AGG + chr6_1:89336209-89336228 Msa0897390:CDS 30.0%
GAAACTAGGATTTCAAATCA+TGG + chr6_1:89336301-89336320 Msa0897390:CDS 30.0%
AACTAGGATTTCAAATCATG+GGG + chr6_1:89336303-89336322 Msa0897390:CDS 30.0%
TCATTTCTGTTTGTGATTCT+TGG - chr6_1:89336449-89336468 None:intergenic 30.0%
!! ACTTGTTGATGACAAAGAAA+AGG + chr6_1:89336580-89336599 Msa0897390:CDS 30.0%
TTCACTTTCTAAGCAGATAA+AGG + chr6_1:89336781-89336800 Msa0897390:CDS 30.0%
!! ACATAGCAAAGATTTTGACA+CGG + chr6_1:89336826-89336845 Msa0897390:CDS 30.0%
GATGATAATTCTTCATCATG+TGG + chr6_1:89336977-89336996 Msa0897390:CDS 30.0%
TCTTGTGATGTTAACACAAA+AGG - chr6_1:89337157-89337176 None:intergenic 30.0%
ACAACTCTAATCCATTTAAG+GGG - chr6_1:89337180-89337199 None:intergenic 30.0%
! ATTAGAGTTGTTTCAGAAAC+TGG + chr6_1:89337189-89337208 Msa0897390:CDS 30.0%
CATCAATGAGAAAATTTGAG+AGG - chr6_1:89337239-89337258 None:intergenic 30.0%
TTACCTATCAGTTCATCTAT+TGG - chr6_1:89337262-89337281 None:intergenic 30.0%
ATACAAGGTAGAAACAAAGA+AGG + chr6_1:89337325-89337344 Msa0897390:CDS 30.0%
AAAGGATTTCAACAGGAATT+TGG + chr6_1:89337422-89337441 Msa0897390:CDS 30.0%
! CTCAATTTTCTGCATTGTAA+AGG - chr6_1:89337488-89337507 None:intergenic 30.0%
AATGCAGAAAATTGAGTTCA+TGG + chr6_1:89337492-89337511 Msa0897390:CDS 30.0%
TTGACTGAAGAAACTTCAAA+TGG - chr6_1:89337565-89337584 None:intergenic 30.0%
AAGTTTCTTCAGTCAAAGAA+GGG + chr6_1:89337569-89337588 Msa0897390:CDS 30.0%
!!! CATTAGTGTTTTTAGAGCTT+TGG - chr6_1:89337651-89337670 None:intergenic 30.0%
GTATGAATTAACACCATCAT+AGG - chr6_1:89337766-89337785 None:intergenic 30.0%
ATGCAATGGTTGATTGAATA+TGG + chr6_1:89337937-89337956 Msa0897390:CDS 30.0%
TGGTTGATTGAATATGGATT+AGG + chr6_1:89337943-89337962 Msa0897390:CDS 30.0%
!! GATTGAATATGGATTAGGAA+AGG + chr6_1:89337948-89337967 Msa0897390:CDS 30.0%
! GAAAACATGCATTGGTAAAA+GGG + chr6_1:89337983-89338002 Msa0897390:CDS 30.0%
TTCTTCAAGGAGTTGAACAT+TGG - chr6_1:89335526-89335545 None:intergenic 35.0%
TGTTGTGTGTGATTGGTAAA+GGG - chr6_1:89335568-89335587 None:intergenic 35.0%
ACAAAAGGAGTTGAAGTTCT+TGG - chr6_1:89335618-89335637 None:intergenic 35.0%
ACAAATCAAGAAGATGCAAC+TGG + chr6_1:89335741-89335760 Msa0897390:CDS 35.0%
!! TTGCTTTCTGATTGAGTTGA+GGG - chr6_1:89335774-89335793 None:intergenic 35.0%
! ATTGCTTTCTGATTGAGTTG+AGG - chr6_1:89335775-89335794 None:intergenic 35.0%
AATTCAGGTGACAACAAGAA+AGG + chr6_1:89335813-89335832 Msa0897390:CDS 35.0%
ATTCAGGTGACAACAAGAAA+GGG + chr6_1:89335814-89335833 Msa0897390:CDS 35.0%
! ACAAGAAAGGGATTTGGAAT+TGG + chr6_1:89335826-89335845 Msa0897390:CDS 35.0%
TCTCTTCCTTCATCAATGAA+TGG + chr6_1:89335927-89335946 Msa0897390:CDS 35.0%
TGTTCAAACAATGCCATCAA+GGG + chr6_1:89335998-89336017 Msa0897390:CDS 35.0%
TGCAATAAACATGACACCTT+AGG - chr6_1:89336061-89336080 None:intergenic 35.0%
! AATTTGAGCCAAGACCATTT+TGG + chr6_1:89336108-89336127 Msa0897390:CDS 35.0%
AGGTATATCCAAAATGGTCT+TGG - chr6_1:89336119-89336138 None:intergenic 35.0%
CTTTAGCATCAACTGCAAAA+AGG - chr6_1:89336139-89336158 None:intergenic 35.0%
! GATGCTAAAGAGCTTGATTT+TGG + chr6_1:89336149-89336168 Msa0897390:CDS 35.0%
!! TGATTTTGGAAGAAACTCAG+TGG + chr6_1:89336163-89336182 Msa0897390:CDS 35.0%
!! GAAACAAGCTTTAGTTTGCA+AGG + chr6_1:89336251-89336270 Msa0897390:CDS 35.0%
AGTTTGCAAGGAAAAGCTAA+AGG + chr6_1:89336263-89336282 Msa0897390:CDS 35.0%
TTTCAAATCATGGGGAAAGA+TGG + chr6_1:89336311-89336330 Msa0897390:CDS 35.0%
! AGAATTTGAAGCCTAGTAGT+AGG + chr6_1:89336360-89336379 Msa0897390:CDS 35.0%
! AGGTTTTTGAACCTACTACT+AGG - chr6_1:89336374-89336393 None:intergenic 35.0%
TCACAAACAGAAATGATGCT+TGG + chr6_1:89336453-89336472 Msa0897390:CDS 35.0%
!! TGTTGATGACAAAGAAAAGG+TGG + chr6_1:89336583-89336602 Msa0897390:CDS 35.0%
GAAGAGAAGAAAGAAGATGA+AGG + chr6_1:89336656-89336675 Msa0897390:CDS 35.0%
AAGAAAGAAGATGAAGGAGA+AGG + chr6_1:89336662-89336681 Msa0897390:CDS 35.0%
ACCTTCAAGTGAAATTGTCA+AGG + chr6_1:89336712-89336731 Msa0897390:CDS 35.0%
TCCTTGACAATTTCACTTGA+AGG - chr6_1:89336716-89336735 None:intergenic 35.0%
AGAGTTTCTTCATATGCTTG+AGG + chr6_1:89336889-89336908 Msa0897390:CDS 35.0%
TCATGTTCTTCAAGATGCAA+AGG - chr6_1:89336959-89336978 None:intergenic 35.0%
CGAGCTACATAATTGTCTAA+AGG - chr6_1:89337097-89337116 None:intergenic 35.0%
ATGCCAATAGATGAACTGAT+AGG + chr6_1:89337256-89337275 Msa0897390:CDS 35.0%
ATAGCTTCTGCTATCATACA+AGG + chr6_1:89337310-89337329 Msa0897390:CDS 35.0%
TGAGTTTAGGAAGACAAGAA+AGG + chr6_1:89337404-89337423 Msa0897390:CDS 35.0%
AGACAAGAAAGGATTTCAAC+AGG + chr6_1:89337415-89337434 Msa0897390:CDS 35.0%
! AGAATTTTCTCTGCAGTAAG+TGG - chr6_1:89337463-89337482 None:intergenic 35.0%
!! GAAGCATTGAAAATTCAAGC+TGG + chr6_1:89337520-89337539 Msa0897390:CDS 35.0%
GAAGTTTCTTCAGTCAAAGA+AGG + chr6_1:89337568-89337587 Msa0897390:CDS 35.0%
ACTGCTTCATATCTTCGTAT+CGG - chr6_1:89337736-89337755 None:intergenic 35.0%
ATACGAAGATATGAAGCAGT+TGG + chr6_1:89337736-89337755 Msa0897390:CDS 35.0%
TACAACAAATGTGGACACAA+AGG + chr6_1:89337783-89337802 Msa0897390:CDS 35.0%
ACAACAAATGTGGACACAAA+GGG + chr6_1:89337784-89337803 Msa0897390:CDS 35.0%
TGATCATGATGAAGATGATG+AGG + chr6_1:89337810-89337829 Msa0897390:CDS 35.0%
ATGAAGATGATGAGGAAAAG+AGG + chr6_1:89337818-89337837 Msa0897390:CDS 35.0%
AAAGTAAGTAGCATGCATGT+GGG + chr6_1:89337844-89337863 Msa0897390:CDS 35.0%
AAAGGCTAACTTCAATGCAA+TGG + chr6_1:89337923-89337942 Msa0897390:CDS 35.0%
!! AATATGGATTAGGAAAGGCA+GGG + chr6_1:89337953-89337972 Msa0897390:CDS 35.0%
GAAGAAAGGAAAACATGCAT+TGG + chr6_1:89337975-89337994 Msa0897390:CDS 35.0%
! GGAAAACATGCATTGGTAAA+AGG + chr6_1:89337982-89338001 Msa0897390:CDS 35.0%
!! TAAAAGGGCAAGATTTGTTG+TGG + chr6_1:89337998-89338017 Msa0897390:CDS 35.0%
GAGCATTTCATCAAGAATCA+TGG + chr6_1:89338020-89338039 Msa0897390:CDS 35.0%
TCAACTCCTTGAAGAACTAG+AGG + chr6_1:89335530-89335549 Msa0897390:CDS 40.0%
!! TTAGAGCCTCTAGTTCTTCA+AGG - chr6_1:89335539-89335558 None:intergenic 40.0%
CTGTTGTGTGTGATTGGTAA+AGG - chr6_1:89335569-89335588 None:intergenic 40.0%
! TTCTAGCTGTTGTGTGTGAT+TGG - chr6_1:89335575-89335594 None:intergenic 40.0%
ACAAAAACAGCCACAAACCT+CGG + chr6_1:89335682-89335701 Msa0897390:CDS 40.0%
GTGACAACAAGAAAGGGATT+TGG + chr6_1:89335820-89335839 Msa0897390:CDS 40.0%
CTGTTCAAACAATGCCATCA+AGG + chr6_1:89335997-89336016 Msa0897390:CDS 40.0%
AAGGAAATCGAGTTAGGCAA+TGG + chr6_1:89336228-89336247 Msa0897390:CDS 40.0%
AGGAAATCGAGTTAGGCAAT+GGG + chr6_1:89336229-89336248 Msa0897390:CDS 40.0%
TTGCAAGGAAAAGCTAAAGG+AGG + chr6_1:89336266-89336285 Msa0897390:CDS 40.0%
AAAAGCTAAAGGAGGAGAGT+TGG + chr6_1:89336274-89336293 Msa0897390:CDS 40.0%
! GGAGAGTTGGTTATGAAACT+AGG + chr6_1:89336287-89336306 Msa0897390:CDS 40.0%
CTGTTTGTGATTCTTGGACT+AGG - chr6_1:89336443-89336462 None:intergenic 40.0%
TCTGCTAATCTTCTCTGTGA+AGG - chr6_1:89336482-89336501 None:intergenic 40.0%
TGATGACAAAGAAAAGGTGG+AGG + chr6_1:89336586-89336605 Msa0897390:CDS 40.0%
AAAGGCTCTTGAATCCATGA+TGG + chr6_1:89336799-89336818 Msa0897390:CDS 40.0%
AAGGCTCTTGAATCCATGAT+GGG + chr6_1:89336800-89336819 Msa0897390:CDS 40.0%
! TTTGCTATGTTCTCCCATCA+TGG - chr6_1:89336816-89336835 None:intergenic 40.0%
GCAAAGGTGGAATTTCAGAT+TGG - chr6_1:89336943-89336962 None:intergenic 40.0%
TGTTCTTCAAGATGCAAAGG+TGG - chr6_1:89336956-89336975 None:intergenic 40.0%
TATCTTCCTGACCTTGGAAA+AGG + chr6_1:89337019-89337038 Msa0897390:CDS 40.0%
! CACAACCTAAACCTTTTCCA+AGG - chr6_1:89337033-89337052 None:intergenic 40.0%
!! TGGAAAAGGTTTAGGTTGTG+TGG + chr6_1:89337033-89337052 Msa0897390:CDS 40.0%
TGTGTGGTTCAAACAAGAGA+TGG + chr6_1:89337049-89337068 Msa0897390:CDS 40.0%
! GACATTTGCATTGCTAGCTT+TGG - chr6_1:89337130-89337149 None:intergenic 40.0%
ACATCACAAGACCCCTTAAA+TGG + chr6_1:89337166-89337185 Msa0897390:CDS 40.0%
!! GCTGAACAGATTGCTTTTGA+AGG + chr6_1:89337286-89337305 Msa0897390:CDS 40.0%
! AGTTTCGGCATTGAAAGACA+TGG + chr6_1:89337372-89337391 Msa0897390:CDS 40.0%
ATGGCGAATGCAATGAGTTT+AGG + chr6_1:89337391-89337410 Msa0897390:CDS 40.0%
!! GAGTTCTGCTATTTCACTAG+AGG + chr6_1:89337612-89337631 Msa0897390:CDS 40.0%
!! CTGCTATTTCACTAGAGGAT+TGG + chr6_1:89337617-89337636 Msa0897390:CDS 40.0%
CAAAGTAAGTAGCATGCATG+TGG + chr6_1:89337843-89337862 Msa0897390:CDS 40.0%
CAATGGAAGGAAGAATGCTT+GGG + chr6_1:89337888-89337907 Msa0897390:CDS 40.0%
!! GAATATGGATTAGGAAAGGC+AGG + chr6_1:89337952-89337971 Msa0897390:CDS 40.0%
CAAGAATCATGGCTGATATG+TGG + chr6_1:89338031-89338050 Msa0897390:CDS 40.0%
ATGCCATCAAGGGTTTCTCA+AGG + chr6_1:89336008-89336027 Msa0897390:CDS 45.0%
ATCGGCAAGGAAATCGAGTT+AGG + chr6_1:89336222-89336241 Msa0897390:CDS 45.0%
CAAATCATGGGGAAAGATGG+AGG + chr6_1:89336314-89336333 Msa0897390:CDS 45.0%
AGGCATGCTAAACGATGTCT+TGG - chr6_1:89336423-89336442 None:intergenic 45.0%
TGACACGGAATCACAACGAT+TGG + chr6_1:89336841-89336860 Msa0897390:CDS 45.0%
CAAGTGTATCTTCCTGACCT+TGG + chr6_1:89337013-89337032 Msa0897390:CDS 45.0%
! CCTAAACCTTTTCCAAGGTC+AGG - chr6_1:89337028-89337047 None:intergenic 45.0%
CCTGACCTTGGAAAAGGTTT+AGG + chr6_1:89337025-89337044 Msa0897390:CDS 45.0%
GTGGTTCAAACAAGAGATGG+AGG + chr6_1:89337052-89337071 Msa0897390:CDS 45.0%
! AAGTGCTGCACGGATAGTTT+CGG + chr6_1:89337357-89337376 Msa0897390:CDS 45.0%
CGAAGATATGAAGCAGTTGG+AGG + chr6_1:89337739-89337758 Msa0897390:CDS 45.0%
! CATGCATGTGGGAGGTTTTA+AGG + chr6_1:89337855-89337874 Msa0897390:CDS 45.0%
!!! ATGTGGGAGGTTTTAAGGTG+AGG + chr6_1:89337860-89337879 Msa0897390:CDS 45.0%
! TTTAAGGTGAGGAGTGGCAA+TGG + chr6_1:89337871-89337890 Msa0897390:CDS 45.0%
GCAATGGAAGGAAGAATGCT+TGG + chr6_1:89337887-89337906 Msa0897390:CDS 45.0%
CTTGGGAGAGTGAGAAACAA+AGG + chr6_1:89337905-89337924 Msa0897390:CDS 45.0%
TTAGGAAAGGCAGGGAAGAA+AGG + chr6_1:89337961-89337980 Msa0897390:CDS 45.0%
GTCGCATGTCCTTATCTCCT+TGG + chr6_1:89335709-89335728 Msa0897390:CDS 50.0%
GCACCTTGAGAAACCCTTGA+TGG - chr6_1:89336014-89336033 None:intergenic 50.0%
GTCGAGCGAATGAAGATGTG+AGG - chr6_1:89336394-89336413 None:intergenic 50.0%
CTATCGACAACCTCGAACTC+CGG - chr6_1:89336623-89336642 None:intergenic 50.0%
GAGTTCGAGGTTGTCGATAG+AGG + chr6_1:89336623-89336642 Msa0897390:CDS 50.0%
! GAGCAAGTTCAAGTGCTGCA+CGG + chr6_1:89337347-89337366 Msa0897390:CDS 50.0%
AGCAGTTGGAGGACCTATGA+TGG + chr6_1:89337750-89337769 Msa0897390:CDS 50.0%
GTAAGTAGCATGCATGTGGG+AGG + chr6_1:89337847-89337866 Msa0897390:CDS 50.0%
!!! GGAGGTTTTAAGGTGAGGAG+TGG + chr6_1:89337865-89337884 Msa0897390:CDS 50.0%
GGTGGAGGACCTTGATCTTC+CGG + chr6_1:89336601-89336620 Msa0897390:CDS 55.0%
CCTCGAACTCCGGAAGATCA+AGG - chr6_1:89336613-89336632 None:intergenic 55.0%
CCTTGATCTTCCGGAGTTCG+AGG + chr6_1:89336610-89336629 Msa0897390:CDS 55.0%
AGGTGAGGAGTGGCAATGGA+AGG + chr6_1:89337875-89337894 Msa0897390:CDS 55.0%
TGCGACGCGACCGAGGTTTG+TGG - chr6_1:89335695-89335714 None:intergenic 65.0%
AAGGACATGCGACGCGACCG+AGG - chr6_1:89335702-89335721 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 89335492 89338092 89335492 ID=Msa0897390;Name=Msa0897390
chr6_1 mRNA 89335492 89338092 89335492 ID=Msa0897390-mRNA-1;Parent=Msa0897390;Name=Msa0897390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|866
chr6_1 exon 89335492 89338092 89335492 ID=Msa0897390-mRNA-1:exon:15108;Parent=Msa0897390-mRNA-1
chr6_1 CDS 89335492 89338092 89335492 ID=Msa0897390-mRNA-1:cds;Parent=Msa0897390-mRNA-1
Gene Sequence

>Msa0897390

ATGGCAGCTGATAACTCTGCCAAGAGAAATTCCAATGTTCAACTCCTTGAAGAACTAGAGGCTCTAAGTGATTCCCTTTACCAATCACACACAACAGCTAGAAGAGCAGCTTCTCTAGCTCTTCCAAGAACTTCAACTCCTTTTGTTCCATCTACTAAAGATGATAATGACACTGCTAAACTTGATAACAACAAAAACAGCCACAAACCTCGGTCGCGTCGCATGTCCTTATCTCCTTGGAAATCAAAAACAAATCAAGAAGATGCAACTGGCAAGTCACCCTCAACTCAATCAGAAAGCAATAAGTTTGATGAAAGAACAAATTCAGGTGACAACAAGAAAGGGATTTGGAATTGGAAACCTATTAGGGCTATTTCTCATATTGGAAAGCAGAAAATAAGTTGTTTGTTTTCTGTTGAAATTCTCACTGCTCAATCTCTTCCTTCATCAATGAATGGATTAAGACTTTCTGTGTGTGTTAGAAAGAAAGAGAATAAAGATGGTGCTGTTCAAACAATGCCATCAAGGGTTTCTCAAGGTGCAGCAGATTTTGAAGAAACACTTTTCCTAAGGTGTCATGTTTATTGCAATCAACAAGGTAATGGTAAAAATCTTAAATTTGAGCCAAGACCATTTTGGATATACCTTTTTGCAGTTGATGCTAAAGAGCTTGATTTTGGAAGAAACTCAGTGGATTTAAGCCAGTTGATTCAAGAATCAATTGATAAAAATCGGCAAGGAAATCGAGTTAGGCAATGGGAAACAAGCTTTAGTTTGCAAGGAAAAGCTAAAGGAGGAGAGTTGGTTATGAAACTAGGATTTCAAATCATGGGGAAAGATGGAGGAGTTGAAATATATAATAATGAAGAGAATTTGAAGCCTAGTAGTAGGTTCAAAAACCTCACATCTTCATTCGCTCGACGAAGATCCAAGACATCGTTTAGCATGCCTAGTCCAAGAATCACAAACAGAAATGATGCTTGGACTCCTTCACAGAGAAGATTAGCAGAAGATATTCAAGAAATCGATGATTTGAATCTTGATGATGATCCAAATCTAGTTCATCATTCATATCCATCTACTAATAAACTTGTTGATGACAAAGAAAAGGTGGAGGACCTTGATCTTCCGGAGTTCGAGGTTGTCGATAGAGGAATTGAAGTTGAAGAGAAGAAAGAAGATGAAGGAGAAGGATCAGAGAAATCTATAGAAGTGAAATCACCTTCAAGTGAAATTGTCAAGGAAATAGTTCATGATCAATTACACTTAACAAGATTAAATGAGCTTGATTCACTTTCTAAGCAGATAAAGGCTCTTGAATCCATGATGGGAGAACATAGCAAAGATTTTGACACGGAATCACAACGATTGGATTCTGATGAAGAAAATGTTACAAGAGAGTTTCTTCATATGCTTGAGGATCAAAAGTCTAGATTATACAAACTCAACCAATCTGAAATTCCACCTTTGCATCTTGAAGAACATGATGATAATTCTTCATCATGTGGAGAATCTAATTCTCAAGTGTATCTTCCTGACCTTGGAAAAGGTTTAGGTTGTGTGGTTCAAACAAGAGATGGAGGATACTTAGCATCTATGAATCCTTTAGACAATTATGTAGCTCGAAACGATACTCCAAAGCTAGCAATGCAAATGTCAAAGCCTTTTGTGTTAACATCACAAGACCCCTTAAATGGATTAGAGTTGTTTCAGAAACTGGCTGCAATTGATCTTGATGAACTCACCTCTCAAATTTTCTCATTGATGCCAATAGATGAACTGATAGGTAAAACTGCTGAACAGATTGCTTTTGAAGGCATAGCTTCTGCTATCATACAAGGTAGAAACAAAGAAGGAGCAAGTTCAAGTGCTGCACGGATAGTTTCGGCATTGAAAGACATGGCGAATGCAATGAGTTTAGGAAGACAAGAAAGGATTTCAACAGGAATTTGGAATGTTGATGACATTCCACTTACTGCAGAGAAAATTCTAGCCTTTACAATGCAGAAAATTGAGTTCATGGCTATTGAAGCATTGAAAATTCAAGCTGGCATAGCTGAAGAAGAAGCTCCATTTGAAGTTTCTTCAGTCAAAGAAGGGAACAAAGAAAAAGATCTATTGAGTTCTGCTATTTCACTAGAGGATTGGATTAGAGACCAAAGCTCTAAAAACACTAATGCAAGTTCTGATATTGATGAACTATCAAATATCACATTGATGTTTGTTGTTCAACTGAGAGATCCGATACGAAGATATGAAGCAGTTGGAGGACCTATGATGGTGTTAATTCATACAACAAATGTGGACACAAAGGGTGATGATCATGATGAAGATGATGAGGAAAAGAGGTTCAAAGTAAGTAGCATGCATGTGGGAGGTTTTAAGGTGAGGAGTGGCAATGGAAGGAAGAATGCTTGGGAGAGTGAGAAACAAAGGCTAACTTCAATGCAATGGTTGATTGAATATGGATTAGGAAAGGCAGGGAAGAAAGGAAAACATGCATTGGTAAAAGGGCAAGATTTGTTGTGGAGCATTTCATCAAGAATCATGGCTGATATGTGGCTAAAGACTATTAGAAATCCAGATGTTAAACTTGTTTAA

Protein sequence

>Msa0897390

MAADNSAKRNSNVQLLEELEALSDSLYQSHTTARRAASLALPRTSTPFVPSTKDDNDTAKLDNNKNSHKPRSRRMSLSPWKSKTNQEDATGKSPSTQSESNKFDERTNSGDNKKGIWNWKPIRAISHIGKQKISCLFSVEILTAQSLPSSMNGLRLSVCVRKKENKDGAVQTMPSRVSQGAADFEETLFLRCHVYCNQQGNGKNLKFEPRPFWIYLFAVDAKELDFGRNSVDLSQLIQESIDKNRQGNRVRQWETSFSLQGKAKGGELVMKLGFQIMGKDGGVEIYNNEENLKPSSRFKNLTSSFARRRSKTSFSMPSPRITNRNDAWTPSQRRLAEDIQEIDDLNLDDDPNLVHHSYPSTNKLVDDKEKVEDLDLPEFEVVDRGIEVEEKKEDEGEGSEKSIEVKSPSSEIVKEIVHDQLHLTRLNELDSLSKQIKALESMMGEHSKDFDTESQRLDSDEENVTREFLHMLEDQKSRLYKLNQSEIPPLHLEEHDDNSSSCGESNSQVYLPDLGKGLGCVVQTRDGGYLASMNPLDNYVARNDTPKLAMQMSKPFVLTSQDPLNGLELFQKLAAIDLDELTSQIFSLMPIDELIGKTAEQIAFEGIASAIIQGRNKEGASSSAARIVSALKDMANAMSLGRQERISTGIWNVDDIPLTAEKILAFTMQKIEFMAIEALKIQAGIAEEEAPFEVSSVKEGNKEKDLLSSAISLEDWIRDQSSKNTNASSDIDELSNITLMFVVQLRDPIRRYEAVGGPMMVLIHTTNVDTKGDDHDEDDEEKRFKVSSMHVGGFKVRSGNGRKNAWESEKQRLTSMQWLIEYGLGKAGKKGKHALVKGQDLLWSISSRIMADMWLKTIRNPDVKLV*