AlfalfaGEDB | Msa1408390

M. sativa cultivar zhongmu-4 / Msa1408390

KEGG: K17686
GO: GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169
PFAM: PF00403.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408390	XP_003629540.2	95.477	995	22	2	1	973	1	994	0.0	1941

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408390	sp\|Q9SH30\|HMA5_ARATH	70.445	944	249	6	56	973	54	993	0.0	1363

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408390	G7LFM9	95.477	995	22	2	1	973	1	994	0.0	1941

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024650	Msa1408390	0.805036	1.620565e-49	-8.615850e-47
Msa0025570	Msa1408390	0.804358	2.245090e-49	-8.615850e-47
Msa0028690	Msa1408390	0.808994	2.355184e-50	-8.615850e-47
Msa0033220	Msa1408390	0.801105	1.053299e-48	-8.615850e-47
Msa0038150	Msa1408390	-0.833082	6.542013e-56	-8.615850e-47
Msa0046870	Msa1408390	0.801213	1.001239e-48	-8.615850e-47
Msa0055830	Msa1408390	0.805009	1.641507e-49	-8.615850e-47
Msa0055940	Msa1408390	0.820562	6.422758e-53	-8.615850e-47
Msa0060410	Msa1408390	0.807093	5.981423e-50	-8.615850e-47
Msa0063940	Msa1408390	0.815926	7.198633e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408390	MtrunA17_Chr8g0374321	97.345	678	17	1	1	678	1	677	0.0	1372
Msa1408390	MtrunA17_Chr5g0397621	71.300	892	227	7	106	973	13	899	0.0	1297
Msa1408390	MtrunA17_Chr8g0339181	54.632	950	395	6	44	965	16	957	0.0	1002
Msa1408390	MtrunA17_Chr8g0339181	27.273	154	108	2	119	271	15	165	7.04e-12	69.7
Msa1408390	MtrunA17_Chr2g0297051	46.952	935	457	7	59	959	84	1013	0.0	815
Msa1408390	MtrunA17_Chr4g0052521	46.211	950	465	9	59	967	45	989	0.0	811
Msa1408390	MtrunA17_Chr4g0052521	30.247	162	98	4	30	190	108	255	2.22e-13	74.7
Msa1408390	MtrunA17_Chr8g0374331	98.387	248	4	0	726	973	1	248	6.04e-167	488
Msa1408390	MtrunA17_Chr8g0374391	98.340	241	4	0	733	973	1	241	1.22e-161	474
Msa1408390	MtrunA17_Chr8g0374371	97.872	188	3	1	437	624	1	187	4.27e-123	373

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408390	AT1G63440.1	70.445	944	249	6	56	973	54	993	0.0	1363
Msa1408390	AT5G44790.1	46.570	962	470	8	43	967	44	998	0.0	832
Msa1408390	AT5G21930.2	35.143	663	369	13	353	965	232	883	1.33e-112	368
Msa1408390	AT5G21930.1	35.143	663	369	13	353	965	232	883	1.33e-112	368
Msa1408390	AT4G33520.2	37.147	638	344	11	353	954	300	916	1.57e-108	359
Msa1408390	AT4G33520.3	37.147	638	344	11	353	954	300	916	2.01e-108	358
Msa1408390	AT5G21930.3	33.786	663	355	14	353	965	232	860	1.04e-100	335
Msa1408390	AT5G21930.4	33.619	583	328	12	353	886	232	804	2.78e-87	298
Msa1408390	AT4G30110.1	29.072	657	382	17	337	960	95	700	2.70e-68	247
Msa1408390	AT4G30110.2	29.072	657	382	17	337	960	95	700	2.70e-68	247

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Find 197 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATGCCAGCAGCAAT+AGG	0.418214	tig0023381:-49914	Msa1408390:intergenic
AAAATCACTTCCTTCAAAAT+GGG	0.444783	tig0023381:-46542	Msa1408390:intergenic
AAAATTGAACTTAAAATTGA+TGG	0.308965	tig0023381:+45974	Msa1408390:CDS
AAAGAATTTGTGTCTATTGC+AGG	0.339636	tig0023381:+48644	Msa1408390:CDS
AAAGCCATCAAACGTTTACC+TGG	0.561493	tig0023381:+43152	Msa1408390:CDS
AAAGCCTGTTGCTAAGATGA+AGG	0.517726	tig0023381:+46864	Msa1408390:CDS
AAATCTGGTCAGCATATTTC+TGG	0.167463	tig0023381:-47020	Msa1408390:intergenic
AACCATGACCGCTGTAGGAG+TGG	0.599538	tig0023381:-47627	Msa1408390:intergenic
AACGCAGAAAACAACAGTTA+TGG	0.524614	tig0023381:-43090	Msa1408390:intergenic
AACTCTAGATGATGATGATA+AGG	0.392400	tig0023381:+46693	Msa1408390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATATACTCACGTTAACAA+TGG	-	tig0023381:43237-43256	Msa1408390:intergenic	30.0%
ATACTTAAAAAGGGAACGAA+TGG	-	tig0023381:43809-43828	Msa1408390:intergenic	30.0%
CAAGTGTTTAGGAGTAATTT+CGG	-	tig0023381:45349-45368	Msa1408390:intergenic	30.0%
TTCATCCTAACTATTCGTTT+AGG	+	tig0023381:45425-45444	Msa1408390:intron	30.0%
AGTTACCTAAACGAATAGTT+AGG	-	tig0023381:45433-45452	Msa1408390:intergenic	30.0%
CAAATTTGCACATCTTAGAA+AGG	+	tig0023381:45495-45514	Msa1408390:intron	30.0%
CAAATATGTAGAGTACACAT+AGG	+	tig0023381:45746-45765	Msa1408390:CDS	30.0%
TGAGTGTAGGTTATAATCTT+TGG	-	tig0023381:45887-45906	Msa1408390:intergenic	30.0%
TATAACCTACACTCAACTAA+TGG	+	tig0023381:45892-45911	Msa1408390:CDS	30.0%
ATGGAAACTATATCAAACAC+AGG	+	tig0023381:45911-45930	Msa1408390:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023381	gene	42829	50137	42829	ID=Msa1408390;Name=Msa1408390
tig0023381	mRNA	42829	50137	42829	ID=Msa1408390-mRNA-1;Parent=Msa1408390;Name=Msa1408390-mRNA-1;_AED=0.18;_eAED=0.18;_QI=107\|0.6\|0.33\|1\|1\|1\|6\|47\|973
tig0023381	exon	42829	43244	42829	ID=Msa1408390-mRNA-1:exon:25573;Parent=Msa1408390-mRNA-1
tig0023381	exon	45662	47062	45662	ID=Msa1408390-mRNA-1:exon:25574;Parent=Msa1408390-mRNA-1
tig0023381	exon	47464	47718	47464	ID=Msa1408390-mRNA-1:exon:25575;Parent=Msa1408390-mRNA-1
tig0023381	exon	47814	47870	47814	ID=Msa1408390-mRNA-1:exon:25576;Parent=Msa1408390-mRNA-1
tig0023381	exon	48551	49033	48551	ID=Msa1408390-mRNA-1:exon:25577;Parent=Msa1408390-mRNA-1
tig0023381	exon	49674	50137	49674	ID=Msa1408390-mRNA-1:exon:25578;Parent=Msa1408390-mRNA-1
tig0023381	five_prime_UTR	42829	42935	42829	ID=Msa1408390-mRNA-1:five_prime_utr;Parent=Msa1408390-mRNA-1
tig0023381	CDS	42936	43244	42936	ID=Msa1408390-mRNA-1:cds;Parent=Msa1408390-mRNA-1
tig0023381	CDS	45662	47062	45662	ID=Msa1408390-mRNA-1:cds;Parent=Msa1408390-mRNA-1
tig0023381	CDS	47464	47718	47464	ID=Msa1408390-mRNA-1:cds;Parent=Msa1408390-mRNA-1
tig0023381	CDS	47814	47870	47814	ID=Msa1408390-mRNA-1:cds;Parent=Msa1408390-mRNA-1
tig0023381	CDS	48551	49033	48551	ID=Msa1408390-mRNA-1:cds;Parent=Msa1408390-mRNA-1
tig0023381	CDS	49674	50090	49674	ID=Msa1408390-mRNA-1:cds;Parent=Msa1408390-mRNA-1
tig0023381	three_prime_UTR	50091	50137	50091	ID=Msa1408390-mRNA-1:three_prime_utr;Parent=Msa1408390-mRNA-1

Gene Sequence

>Msa1408390

ATGGGTCGTAAAAAGTTTGATGGTGCTTGGGAATGCATAAATGGAGGGTTACACTTGCAGTGCTGTGGGAACCTGTCACCTGAGTCACACTATCCGTCGATGACGACATATCCTAAAGGAACGTCGTCATCGATGGAAGAAGGCTCAGAGCTGGCCATAACTGTTGTTTTCTGCGTTATGGGAATGACATGTGCTGCCTGTGCTGGATCTGTTGAGAAAGCCATCAAACGTTTACCTGGTATTCGAGAGGCTGTTGTTGATGTCTTGAATGATAAAGCTCAGGTTCTATATCTTCCCACCATTGTTAACGAAGAGAGCATACGTGAGGCCATTGAAGATGCTGGATTTGAGGCCAAATCCATGGAAGATGATAGTTCCAACAACACTTCGTTTCAAATATGTAGAGTACACATAGGTGGCATGACTTGTACTTCTTGCTCCTCCAATGTGCAATCAGCTCTTCAATCCCTTCGTGGGGTGCAAATAGCACAAGTGGCCTTAGCAACTGAAGAAGCAGAAATTCGTTACGATCCAAAGATTATAACCTACACTCAACTAATGGAAACTATATCAAACACAGGTTTTAATCCCATATTAATAAGCAAAGGGGAACACATAAGCAAAATTGAACTTAAAATTGATGGCATAAAAAATGAACAATCAATGTATATCATTGAACAATCTCTTAGGACACTCCAAGGTGTTGAAACCATAGAAACATATTTAGACATTAATAAAATTGTCTTAACTTATAAACCTTATATGACTGGTCCAAGAACCTTCATTGAACTCATTGAATCTTCAGGATCAGGGTGTTTTAGAGCCACAATATTTCCAAATGATGGTGGAAGAAAAGCACATAAACAAGAGGAAATTAATAGATACTTTAAATTATTAATTTGGAGTTTGGTTTTTACTATTCCTGTTTTTTTAACATCTATGGTTCTTATGTATATACCTGGAGTTAAAGATGTTTTAGAGGTTAAAATTGTCAATATGTTGAATATTGGATTGCTCATAAGGTGGGAGTTTTCGACACCGGTACAGTTTGTCATAGGAAGAAGATTTTATGTTGGAGCCTATAAAGCTTTGCGAAAAGGTTATGCAAACATGGATTTGTTGATAGCATTGGGAACAAATGCAGCTTATTTCTATTCTGTTTATGTTGTTGGAAGAGCTACATTTTCTTCCCATTTTGAAGGAAGTGATTTTTTTGAAACAAGTTCTATGCTTATTTCTTTTATTCTACTTGGCAAGTATTTGGAAGTGTTGGCTAAAGGGAAAACATCACAAGCTATCGCGAAACTCATGGATTTAACACCTGATACAGCAACCTTACTAACTCTAGATGATGATGATAAGGGAAATGTTATAGGTGAAAGAGAAATTGATAGCAGGTTGATACAGAAGAATGATGTGATCAAAGTTGTGCCGGGCGCGAAAGTAGCATCAGATGGTTTTGTTGTTTGGGGACAAAGTCATGTAAATGAGAGTATGATAACTGGTGAGGCAAAGCCTGTTGCTAAGATGAAGGGTGATATAGTGATTGGTGGTACTGTGAATGAAAATGGTGTTTTGCATGTTAAGGTAACAAGGGTTGGATCCGAAACTGCACTTTCACAGATTGTTAGACTTGTTGAGTCTGCTCAGATGGCTAAAGCTCCTGTCCAGAAATATGCTGACCAGATTTCTAAATACTTTGTTCCTATAGTGATTGTGTTATCTCTTTCAACATGGATATCATGGTTTGTAGCTGGAAAGTTGCATTCATACCCAAAATCATGGATACCATCTTCTATGAATAGTTTTGAGCTTGCACTTCAGTTTGGAATTTCAGTCATGGTCATAGCTTGTCCTTGTGCTCTAGGCCTAGCCACTCCTACAGCGGTCATGGTTGGTACCGGAGTTGGTGCAACTCAAGGTGTGTTGATCAAAGGTGGCCAAGCATTAGAAAGTGCACACAAGATGAATTGCATTGTGTTTGATAAGACAGGAACTCTGACTATTGGGAAGCCAGTGGTTGTGAATAGTGAACATCCAATAGCAAAGTCCATTGTTGATCATGCCAAAAATATCACACAAGATGAACAAAATCATTCATCGTGGCCAGAAGCAAAAGAATTTGTGTCTATTGCAGGACATGGAGTGAAGGCAGTTGTTCAAAACAAGGAAATAATGGTTGGAAATAAAAAACTGATGTTAGATCATAACATAGCTATTTCATTGGAAGCTGAAGAAATACTAGCAGAAGCTGAAAACATGGCTCAAACAGGAATTTTGGTATCATTGGATGGGGAAATTGTTGGAGTTTTGGCTGTGTCTGATCCACTGAAACCTGATGCAAAAGAAGTTATTTCTATTCTTAAATCAATGAAAATAAAGAGCATAATGGTGACAGGTGATAATTGGGGAACTGCAAATTCTATTGCTAGACAAGCTGGTATTGAAACTGTCATGGCTGAGGCTCAACCTGAGACTAAAGCTACTAAAGTAAAGGAATTGCAGAATTCTGGATACACTGTAGGAATGGTAGGAGATGGTATCAATGATTCACCAGCACTAGTAGCAGCTGATGTTGGAATGGCAATTGGTGCTGGCACAGACATTGCTATTGAAGCAGCTGACATTGTTCTTATGAAGAGTAACTTAGAGGATATAATAATTGCCATTGACCTTGCAAAGAAAACTTTCTCACGTATACGTCTAAATTACATTTGGGCTTTAGGTTATAATATTCTAGCCATTCCTATTGCTGCTGGCATACTTTTTCCTTCTACTAGATTTAGGTTACCACCTTGGATTGCTGGAGCTGCAATGGCTGCTTCTTCTATTAGTGTTGTTTGCTCTTCTCTCTTGTTGAAGAAATACAAGAAACCAACCAAGCTGAATAACTTGGAGATTAATGGTATTCAGATTGAATAA

Protein sequence

>Msa1408390

MGRKKFDGAWECINGGLHLQCCGNLSPESHYPSMTTYPKGTSSSMEEGSELAITVVFCVMGMTCAACAGSVEKAIKRLPGIREAVVDVLNDKAQVLYLPTIVNEESIREAIEDAGFEAKSMEDDSSNNTSFQICRVHIGGMTCTSCSSNVQSALQSLRGVQIAQVALATEEAEIRYDPKIITYTQLMETISNTGFNPILISKGEHISKIELKIDGIKNEQSMYIIEQSLRTLQGVETIETYLDINKIVLTYKPYMTGPRTFIELIESSGSGCFRATIFPNDGGRKAHKQEEINRYFKLLIWSLVFTIPVFLTSMVLMYIPGVKDVLEVKIVNMLNIGLLIRWEFSTPVQFVIGRRFYVGAYKALRKGYANMDLLIALGTNAAYFYSVYVVGRATFSSHFEGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPDTATLLTLDDDDKGNVIGEREIDSRLIQKNDVIKVVPGAKVASDGFVVWGQSHVNESMITGEAKPVAKMKGDIVIGGTVNENGVLHVKVTRVGSETALSQIVRLVESAQMAKAPVQKYADQISKYFVPIVIVLSLSTWISWFVAGKLHSYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKMNCIVFDKTGTLTIGKPVVVNSEHPIAKSIVDHAKNITQDEQNHSSWPEAKEFVSIAGHGVKAVVQNKEIMVGNKKLMLDHNIAISLEAEEILAEAENMAQTGILVSLDGEIVGVLAVSDPLKPDAKEVISILKSMKIKSIMVTGDNWGTANSIARQAGIETVMAEAQPETKATKVKELQNSGYTVGMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLAKKTFSRIRLNYIWALGYNILAIPIAAGILFPSTRFRLPPWIAGAAMAASSISVVCSSLLLKKYKKPTKLNNLEINGIQIE*