Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409690 | XP_039690241.1 | 58.382 | 173 | 20 | 3 | 86 | 208 | 95 | 265 | 2.62e-47 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409690 | sp|Q0WVF8|MMS19_ARATH | 32.692 | 156 | 55 | 2 | 86 | 191 | 96 | 251 | 1.25e-17 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409690 | G7K7L4 | 58.382 | 173 | 20 | 3 | 86 | 208 | 95 | 265 | 1.32e-47 | 177 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0409690 | 0.809321 | 2.004810e-50 | -8.615850e-47 |
| Msa0015390 | Msa0409690 | 0.812990 | 3.210332e-51 | -8.615850e-47 |
| Msa0015400 | Msa0409690 | 0.810258 | 1.260452e-50 | -8.615850e-47 |
| Msa0017510 | Msa0409690 | 0.803060 | 4.175027e-49 | -8.615850e-47 |
| Msa0018650 | Msa0409690 | 0.806050 | 9.929081e-50 | -8.615850e-47 |
| Msa0026910 | Msa0409690 | 0.810723 | 1.000495e-50 | -8.615850e-47 |
| Msa0035150 | Msa0409690 | 0.804460 | 2.137753e-49 | -8.615850e-47 |
| Msa0036140 | Msa0409690 | 0.801516 | 8.679316e-49 | -8.615850e-47 |
| Msa0044000 | Msa0409690 | 0.814209 | 1.731416e-51 | -8.615850e-47 |
| Msa0044330 | Msa0409690 | 0.810447 | 1.147329e-50 | -8.615850e-47 |
| Msa0051020 | Msa0409690 | 0.801395 | 9.186576e-49 | -8.615850e-47 |
| Msa0067140 | Msa0409690 | 0.800174 | 1.630816e-48 | -8.615850e-47 |
| Msa0078900 | Msa0409690 | 0.808640 | 2.803711e-50 | -8.615850e-47 |
| Msa0079070 | Msa0409690 | 0.801729 | 7.848387e-49 | -8.615850e-47 |
| Msa0084380 | Msa0409690 | 0.814898 | 1.218311e-51 | -8.615850e-47 |
| Msa0090570 | Msa0409690 | 0.812937 | 3.296986e-51 | -8.615850e-47 |
| Msa0091600 | Msa0409690 | 0.806140 | 9.503426e-50 | -8.615850e-47 |
| Msa0112590 | Msa0409690 | 0.801977 | 6.978103e-49 | -8.615850e-47 |
| Msa0114060 | Msa0409690 | 0.802597 | 5.203042e-49 | -8.615850e-47 |
| Msa0116770 | Msa0409690 | 0.820978 | 5.154083e-53 | -8.615850e-47 |
| Msa0127800 | Msa0409690 | 0.828744 | 7.582383e-55 | -8.615850e-47 |
| Msa0131770 | Msa0409690 | 0.813225 | 2.850371e-51 | -8.615850e-47 |
| Msa0136070 | Msa0409690 | 0.801218 | 9.986083e-49 | -8.615850e-47 |
| Msa0157290 | Msa0409690 | 0.802573 | 5.262287e-49 | -8.615850e-47 |
| Msa0165210 | Msa0409690 | 0.825462 | 4.625292e-54 | -8.615850e-47 |
| Msa0165220 | Msa0409690 | 0.810666 | 1.028841e-50 | -8.615850e-47 |
| Msa0171540 | Msa0409690 | 0.819066 | 1.411614e-52 | -8.615850e-47 |
| Msa0180500 | Msa0409690 | 0.822167 | 2.737877e-53 | -8.615850e-47 |
| Msa0197660 | Msa0409690 | 0.823217 | 1.559605e-53 | -8.615850e-47 |
| Msa0204840 | Msa0409690 | 0.801388 | 9.220726e-49 | -8.615850e-47 |
| Msa0211150 | Msa0409690 | 0.824696 | 7.017443e-54 | -8.615850e-47 |
| Msa0212990 | Msa0409690 | 0.817344 | 3.462274e-52 | -8.615850e-47 |
| Msa0218270 | Msa0409690 | 0.811057 | 8.469657e-51 | -8.615850e-47 |
| Msa0367870 | Msa0409690 | 0.819577 | 1.079787e-52 | -8.615850e-47 |
| Msa0376350 | Msa0409690 | 0.802567 | 5.277845e-49 | -8.615850e-47 |
| Msa0381610 | Msa0409690 | -0.811805 | 5.824670e-51 | -8.615850e-47 |
| Msa0388960 | Msa0409690 | 0.805344 | 1.396648e-49 | -8.615850e-47 |
| Msa0395790 | Msa0409690 | 0.830846 | 2.333348e-55 | -8.615850e-47 |
| Msa0409690 | Msa0427120 | 0.803660 | 3.134988e-49 | -8.615850e-47 |
| Msa0409690 | Msa0440750 | 0.808011 | 3.819367e-50 | -8.615850e-47 |
| Msa0409690 | Msa0460590 | 0.801611 | 8.299103e-49 | -8.615850e-47 |
| Msa0409690 | Msa0464680 | 0.811685 | 6.186358e-51 | -8.615850e-47 |
| Msa0409690 | Msa0471670 | 0.801857 | 7.387216e-49 | -8.615850e-47 |
| Msa0409690 | Msa0479170 | 0.813878 | 2.047674e-51 | -8.615850e-47 |
| Msa0409690 | Msa0484780 | 0.811872 | 5.633501e-51 | -8.615850e-47 |
| Msa0409690 | Msa0490140 | 0.801494 | 8.767951e-49 | -8.615850e-47 |
| Msa0409690 | Msa0495330 | 0.817642 | 2.966414e-52 | -8.615850e-47 |
| Msa0409690 | Msa0512750 | 0.808531 | 2.958152e-50 | -8.615850e-47 |
| Msa0409690 | Msa0516170 | 0.810923 | 9.054155e-51 | -8.615850e-47 |
| Msa0409690 | Msa0523460 | 0.804651 | 1.949685e-49 | -8.615850e-47 |
| Msa0409690 | Msa0532350 | 0.802565 | 5.282092e-49 | -8.615850e-47 |
| Msa0409690 | Msa0545700 | 0.811865 | 5.653666e-51 | -8.615850e-47 |
| Msa0409690 | Msa0585230 | 0.828192 | 1.030583e-54 | -8.615850e-47 |
| Msa0409690 | Msa0626090 | 0.817455 | 3.268832e-52 | -8.615850e-47 |
| Msa0409690 | Msa0645300 | 0.801536 | 8.598917e-49 | -8.615850e-47 |
| Msa0409690 | Msa0652940 | 0.802208 | 6.257271e-49 | -8.615850e-47 |
| Msa0409690 | Msa0663810 | 0.825186 | 5.376293e-54 | -8.615850e-47 |
| Msa0409690 | Msa0672690 | 0.806453 | 8.168023e-50 | -8.615850e-47 |
| Msa0409690 | Msa0673460 | 0.808657 | 2.781291e-50 | -8.615850e-47 |
| Msa0409690 | Msa0693380 | 0.806732 | 7.130356e-50 | -8.615850e-47 |
| Msa0409690 | Msa0703780 | 0.832035 | 1.188976e-55 | -8.615850e-47 |
| Msa0409690 | Msa0712270 | 0.811148 | 8.092274e-51 | -8.615850e-47 |
| Msa0409690 | Msa0731940 | 0.816321 | 5.872662e-52 | -8.615850e-47 |
| Msa0409690 | Msa0735170 | 0.804056 | 2.593905e-49 | -8.615850e-47 |
| Msa0409690 | Msa0756460 | 0.820275 | 7.474917e-53 | -8.615850e-47 |
| Msa0409690 | Msa0760130 | 0.819296 | 1.251533e-52 | -8.615850e-47 |
| Msa0409690 | Msa0784480 | 0.806688 | 7.284157e-50 | -8.615850e-47 |
| Msa0409690 | Msa0810220 | 0.801362 | 9.333137e-49 | -8.615850e-47 |
| Msa0409690 | Msa0820850 | 0.813300 | 2.744294e-51 | -8.615850e-47 |
| Msa0409690 | Msa0822870 | 0.808700 | 2.722117e-50 | -8.615850e-47 |
| Msa0409690 | Msa0831850 | 0.802130 | 6.492799e-49 | -8.615850e-47 |
| Msa0409690 | Msa0832340 | 0.833019 | 6.783505e-56 | -8.615850e-47 |
| Msa0409690 | Msa0835530 | 0.810908 | 9.120415e-51 | -8.615850e-47 |
| Msa0409690 | Msa0844490 | 0.819324 | 1.232733e-52 | -8.615850e-47 |
| Msa0409690 | Msa0857640 | 0.836876 | 7.238300e-57 | -8.615850e-47 |
| Msa0409690 | Msa0861130 | 0.813039 | 3.131046e-51 | -8.615850e-47 |
| Msa0409690 | Msa0897330 | 0.821180 | 4.629830e-53 | -8.615850e-47 |
| Msa0409690 | Msa0909140 | 0.816522 | 5.296684e-52 | -8.615850e-47 |
| Msa0409690 | Msa0927380 | 0.813483 | 2.501325e-51 | -8.615850e-47 |
| Msa0409690 | Msa0931520 | 0.802379 | 5.769569e-49 | -8.615850e-47 |
| Msa0409690 | Msa0936300 | 0.817323 | 3.500322e-52 | -8.615850e-47 |
| Msa0409690 | Msa0947660 | 0.823897 | 1.081410e-53 | -8.615850e-47 |
| Msa0409690 | Msa0948320 | 0.807019 | 6.201302e-50 | -8.615850e-47 |
| Msa0409690 | Msa0954550 | 0.800223 | 1.593857e-48 | -8.615850e-47 |
| Msa0409690 | Msa0966750 | 0.803302 | 3.719255e-49 | -8.615850e-47 |
| Msa0409690 | Msa0969450 | 0.816950 | 4.246188e-52 | -8.615850e-47 |
| Msa0409690 | Msa0969520 | 0.827428 | 1.573169e-54 | -8.615850e-47 |
| Msa0409690 | Msa0973100 | 0.819958 | 8.837450e-53 | -8.615850e-47 |
| Msa0409690 | Msa0974080 | 0.812203 | 4.771968e-51 | -8.615850e-47 |
| Msa0409690 | Msa0975220 | 0.811381 | 7.205082e-51 | -8.615850e-47 |
| Msa0409690 | Msa1000890 | 0.812922 | 3.322512e-51 | -8.615850e-47 |
| Msa0409690 | Msa1000900 | 0.808202 | 3.478151e-50 | -8.615850e-47 |
| Msa0409690 | Msa1002850 | 0.824565 | 7.535598e-54 | -8.615850e-47 |
| Msa0409690 | Msa1014540 | 0.841904 | 3.580281e-58 | -8.615850e-47 |
| Msa0409690 | Msa1016320 | 0.809246 | 2.080816e-50 | -8.615850e-47 |
| Msa0409690 | Msa1019000 | 0.801957 | 7.046967e-49 | -8.615850e-47 |
| Msa0409690 | Msa1030970 | 0.816645 | 4.969958e-52 | -8.615850e-47 |
| Msa0409690 | Msa1034500 | 0.802010 | 6.870985e-49 | -8.615850e-47 |
| Msa0409690 | Msa1036610 | 0.807893 | 4.046191e-50 | -8.615850e-47 |
| Msa0409690 | Msa1075540 | 0.833351 | 5.605545e-56 | -8.615850e-47 |
| Msa0409690 | Msa1075650 | 0.806556 | 7.767364e-50 | -8.615850e-47 |
| Msa0409690 | Msa1079590 | 0.801989 | 6.941649e-49 | -8.615850e-47 |
| Msa0409690 | Msa1082500 | 0.821113 | 4.798535e-53 | -8.615850e-47 |
| Msa0409690 | Msa1083840 | 0.803756 | 2.995179e-49 | -8.615850e-47 |
| Msa0409690 | Msa1104090 | 0.804252 | 2.362283e-49 | -8.615850e-47 |
| Msa0409690 | Msa1104560 | 0.801780 | 7.662316e-49 | -8.615850e-47 |
| Msa0409690 | Msa1113170 | 0.810463 | 1.138294e-50 | -8.615850e-47 |
| Msa0409690 | Msa1121480 | 0.830763 | 2.445817e-55 | -8.615850e-47 |
| Msa0409690 | Msa1121490 | 0.858295 | 9.090299e-63 | -8.615850e-47 |
| Msa0409690 | Msa1131220 | 0.801068 | 1.071870e-48 | -8.615850e-47 |
| Msa0409690 | Msa1137570 | 0.824212 | 9.120690e-54 | -8.615850e-47 |
| Msa0409690 | Msa1144450 | 0.806117 | 9.611677e-50 | -8.615850e-47 |
| Msa0409690 | Msa1154280 | 0.801830 | 7.481648e-49 | -8.615850e-47 |
| Msa0409690 | Msa1204530 | 0.808404 | 3.148472e-50 | -8.615850e-47 |
| Msa0409690 | Msa1204630 | 0.809346 | 1.980412e-50 | -8.615850e-47 |
| Msa0409690 | Msa1210020 | 0.801899 | 7.242612e-49 | -8.615850e-47 |
| Msa0409690 | Msa1225130 | 0.804985 | 1.660794e-49 | -8.615850e-47 |
| Msa0409690 | Msa1232740 | 0.805839 | 1.099924e-49 | -8.615850e-47 |
| Msa0409690 | Msa1237020 | 0.807853 | 4.127055e-50 | -8.615850e-47 |
| Msa0409690 | Msa1246510 | 0.800553 | 1.365727e-48 | -8.615850e-47 |
| Msa0409690 | Msa1252140 | 0.802061 | 6.706532e-49 | -8.615850e-47 |
| Msa0409690 | Msa1277660 | 0.811201 | 7.883137e-51 | -8.615850e-47 |
| Msa0409690 | Msa1284680 | 0.841256 | 5.306441e-58 | -8.615850e-47 |
| Msa0409690 | Msa1286800 | 0.829238 | 5.758101e-55 | -8.615850e-47 |
| Msa0409690 | Msa1287190 | 0.803469 | 3.434802e-49 | -8.615850e-47 |
| Msa0409690 | Msa1287220 | 0.803098 | 4.098904e-49 | -8.615850e-47 |
| Msa0409690 | Msa1287460 | 0.807249 | 5.542946e-50 | -8.615850e-47 |
| Msa0409690 | Msa1306850 | 0.802705 | 4.942497e-49 | -8.615850e-47 |
| Msa0409690 | Msa1313320 | 0.815173 | 1.058725e-51 | -8.615850e-47 |
| Msa0409690 | Msa1331000 | 0.820500 | 6.638873e-53 | -8.615850e-47 |
| Msa0409690 | Msa1345220 | 0.803277 | 3.764174e-49 | -8.615850e-47 |
| Msa0409690 | Msa1353470 | 0.810817 | 9.545346e-51 | -8.615850e-47 |
| Msa0409690 | Msa1359040 | 0.810950 | 8.933940e-51 | -8.615850e-47 |
| Msa0409690 | Msa1372760 | 0.816795 | 4.599943e-52 | -8.615850e-47 |
| Msa0409690 | Msa1373030 | 0.817313 | 3.519161e-52 | -8.615850e-47 |
| Msa0409690 | Msa1390700 | 0.807314 | 5.371024e-50 | -8.615850e-47 |
| Msa0409690 | Msa1392910 | 0.807906 | 4.020880e-50 | -8.615850e-47 |
| Msa0409690 | Msa1394380 | 0.805942 | 1.046283e-49 | -8.615850e-47 |
| Msa0409690 | Msa1412640 | 0.802065 | 6.695014e-49 | -8.615850e-47 |
| Msa0409690 | Msa1419960 | 0.800047 | 1.731329e-48 | -8.615850e-47 |
| Msa0409690 | Msa1420820 | 0.832560 | 8.814995e-56 | -8.615850e-47 |
| Msa0409690 | Msa1435270 | 0.820128 | 8.079725e-53 | -8.615850e-47 |
| Msa0409690 | Msa1460050 | 0.809878 | 1.521838e-50 | -8.615850e-47 |
| Msa0409690 | Msa1464810 | 0.805539 | 1.271543e-49 | -8.615850e-47 |
| Msa0409690 | Msa1466540 | 0.826835 | 2.180612e-54 | -8.615850e-47 |
| Msa0239800 | Msa0409690 | 0.816528 | 5.278476e-52 | -8.615850e-47 |
| Msa0244960 | Msa0409690 | 0.816499 | 5.358225e-52 | -8.615850e-47 |
| Msa0251640 | Msa0409690 | 0.821820 | 3.295445e-53 | -8.615850e-47 |
| Msa0257460 | Msa0409690 | 0.800164 | 1.638552e-48 | -8.615850e-47 |
| Msa0277820 | Msa0409690 | 0.815029 | 1.139686e-51 | -8.615850e-47 |
| Msa0280090 | Msa0409690 | 0.800371 | 1.487390e-48 | -8.615850e-47 |
| Msa0292930 | Msa0409690 | 0.805042 | 1.615733e-49 | -8.615850e-47 |
| Msa0317510 | Msa0409690 | 0.815960 | 7.073993e-52 | -8.615850e-47 |
| Msa0326520 | Msa0409690 | 0.807047 | 6.116100e-50 | -8.615850e-47 |
| Msa0330340 | Msa0409690 | 0.818847 | 1.582985e-52 | -8.615850e-47 |
| Msa0336320 | Msa0409690 | 0.801610 | 8.302636e-49 | -8.615850e-47 |
| Msa0340450 | Msa0409690 | 0.801338 | 9.437535e-49 | -8.615850e-47 |
| Msa0363790 | Msa0409690 | 0.810163 | 1.321539e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409690 | MtrunA17_Chr5g0439481 | 58.382 | 173 | 20 | 3 | 86 | 208 | 95 | 265 | 2.55e-51 | 177 |
| Msa0409690 | MtrunA17_Chr2g0331001 | 57.051 | 156 | 17 | 2 | 86 | 191 | 95 | 250 | 1.38e-44 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409690 | AT5G48120.3 | 32.692 | 156 | 55 | 2 | 86 | 191 | 96 | 251 | 1.27e-18 | 84.0 |
| Msa0409690 | AT5G48120.1 | 32.692 | 156 | 55 | 2 | 86 | 191 | 96 | 251 | 1.27e-18 | 84.0 |
| Msa0409690 | AT5G48120.2 | 32.692 | 156 | 55 | 2 | 86 | 191 | 96 | 251 | 1.27e-18 | 84.0 |
Find 60 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCGATGTAAACTATCTA+TGG | 0.212415 | 3_2:+50617137 | Msa0409690:three_prime_UTR |
| AAACGATGTAGATCTGAAAA+AGG | 0.250657 | 3_2:-50612645 | None:intergenic |
| ATCTATAAGCAGGCAGAGTT+TGG | 0.299087 | 3_2:+50613809 | Msa0409690:CDS |
| ATCCACTTCTCATGGCGTTT+TGG | 0.303707 | 3_2:-50617044 | None:intergenic |
| GATCCAGAATGTTGAGTCTT+TGG | 0.304565 | 3_2:+50615211 | Msa0409690:CDS |
| ATAGCTTGGTTGGGTTCTTC+TGG | 0.312134 | 3_2:+50613599 | Msa0409690:CDS |
| AATAGAGCTCTGATAGATTC+TGG | 0.327926 | 3_2:+50617176 | Msa0409690:three_prime_UTR |
| TTCTTCAGGAATTCTTCTTC+TGG | 0.346745 | 3_2:+50613524 | Msa0409690:intron |
| TGCTGATTCAGTTGCCTCAT+TGG | 0.348816 | 3_2:+50614390 | Msa0409690:CDS |
| TGCGTTGCTTGGAACTTATA+AGG | 0.355169 | 3_2:+50613957 | Msa0409690:CDS |
| GGTGCTGATTCTAAATTTGT+TGG | 0.370825 | 3_2:-50617023 | None:intergenic |
| GTGCCAAAGACTCAACATTC+TGG | 0.387932 | 3_2:-50615214 | None:intergenic |
| TAGCTTGGTTGGGTTCTTCT+GGG | 0.408155 | 3_2:+50613600 | Msa0409690:CDS |
| ATCTCCTCTGTGTTACTCTC+AGG | 0.422820 | 3_2:+50612710 | Msa0409690:CDS |
| CGATTATATCCTGATCCATC+TGG | 0.423329 | 3_2:+50615236 | Msa0409690:CDS |
| TATTTATAATCAGGCAGATT+GGG | 0.437183 | 3_2:+50613913 | Msa0409690:intron |
| AGGAATTCTTCTTCTGGCAG+AGG | 0.451191 | 3_2:+50613530 | Msa0409690:intron |
| AAAACTATACATAGCTTGGT+TGG | 0.451872 | 3_2:+50613589 | Msa0409690:CDS |
| TGGGTTCTTCTGGGAAAGAC+TGG | 0.452696 | 3_2:+50613609 | Msa0409690:CDS |
| CGACTATTGAGTGAGTGCTT+GGG | 0.456912 | 3_2:-50612580 | None:intergenic |
| TTATTTATAATCAGGCAGAT+TGG | 0.468281 | 3_2:+50613912 | Msa0409690:intron |
| ACTCAATAGTCGTTCTCATT+CGG | 0.472462 | 3_2:+50612591 | Msa0409690:five_prime_UTR |
| GTAAACTGAATGGGAAAGTA+AGG | 0.472587 | 3_2:-50615302 | None:intergenic |
| ACGACTATTGAGTGAGTGCT+TGG | 0.478812 | 3_2:-50612581 | None:intergenic |
| AAACTATACATAGCTTGGTT+GGG | 0.482444 | 3_2:+50613590 | Msa0409690:CDS |
| GAGGAAAAGTGATGTGGGTA+TGG | 0.486473 | 3_2:+50613979 | Msa0409690:CDS |
| GTATCTGTTGATACTTATTG+TGG | 0.496796 | 3_2:+50613745 | Msa0409690:CDS |
| CACCAAAACGCCATGAGAAG+TGG | 0.513550 | 3_2:+50617042 | Msa0409690:CDS |
| ATGTAAACTATCTATGGGAA+AGG | 0.513798 | 3_2:+50617143 | Msa0409690:three_prime_UTR |
| AGGTGCACTTGTGCGTTGCT+TGG | 0.514283 | 3_2:+50613946 | Msa0409690:CDS |
| CTTACATGTGTAAACTGAAT+GGG | 0.518044 | 3_2:-50615311 | None:intergenic |
| TGCAAAGAGATGACCTATCA+AGG | 0.519237 | 3_2:+50615617 | Msa0409690:CDS |
| GCAAATAGTCCAGATGGATC+AGG | 0.521258 | 3_2:-50615245 | None:intergenic |
| ACGGTAAAAGTCTATGTGAA+AGG | 0.532282 | 3_2:+50617076 | Msa0409690:exon |
| CCGGTCTTATCCACTTCTCA+TGG | 0.536195 | 3_2:-50617052 | None:intergenic |
| AATCGATGTAAACTATCTAT+GGG | 0.537716 | 3_2:+50617138 | Msa0409690:three_prime_UTR |
| GGGATTGATGATCTATAAGC+AGG | 0.539351 | 3_2:+50613799 | Msa0409690:CDS |
| TGTAAACTATCTATGGGAAA+GGG | 0.544565 | 3_2:+50617144 | Msa0409690:three_prime_UTR |
| AATCAGCATGATGTTCTAGC+AGG | 0.546652 | 3_2:-50614375 | None:intergenic |
| GCTTACATGTGTAAACTGAA+TGG | 0.546716 | 3_2:-50615312 | None:intergenic |
| CAGTAAAACTATACATAGCT+TGG | 0.548555 | 3_2:+50613585 | Msa0409690:CDS |
| GTACCATCAGAGTCCTTGAT+AGG | 0.548690 | 3_2:-50615630 | None:intergenic |
| TTGCACATGAGCATCCCCAC+TGG | 0.557692 | 3_2:-50615599 | None:intergenic |
| AAGCTTGCAAATAGTCCAGA+TGG | 0.562500 | 3_2:-50615251 | None:intergenic |
| GAGATTGCAATATGTGAAAG+TGG | 0.568200 | 3_2:+50617212 | Msa0409690:three_prime_UTR |
| CGGTAAAAGTCTATGTGAAA+GGG | 0.574273 | 3_2:+50617077 | Msa0409690:exon |
| ATAAGGAGGAAAAGTGATGT+GGG | 0.575456 | 3_2:+50613974 | Msa0409690:CDS |
| TATAAGGAGGAAAAGTGATG+TGG | 0.578294 | 3_2:+50613973 | Msa0409690:CDS |
| TTTCTTTAGCAGACAACCAG+TGG | 0.581788 | 3_2:+50615583 | Msa0409690:intron |
| GACTATTGAGTGAGTGCTTG+GGG | 0.587194 | 3_2:-50612579 | None:intergenic |
| ATCATAGAGACAATGATGAT+CGG | 0.605716 | 3_2:-50612673 | None:intergenic |
| CCATGAGAAGTGGATAAGAC+CGG | 0.609049 | 3_2:+50617052 | Msa0409690:CDS |
| TGACCTATCAAGGACTCTGA+TGG | 0.620654 | 3_2:+50615627 | Msa0409690:CDS |
| TTCTTTAGCAGACAACCAGT+GGG | 0.624563 | 3_2:+50615584 | Msa0409690:intron |
| CGAAGCAAGGACTACCAATG+AGG | 0.668037 | 3_2:-50614404 | None:intergenic |
| AGAAGTGGATAAGACCGGCA+CGG | 0.690775 | 3_2:+50617057 | Msa0409690:CDS |
| GTTGCTTGGAACTTATAAGG+AGG | 0.695022 | 3_2:+50613960 | Msa0409690:CDS |
| GCAGATTGGGAAGCAGTACG+AGG | 0.715218 | 3_2:+50613926 | Msa0409690:CDS |
| TCTTTAGCAGACAACCAGTG+GGG | 0.721112 | 3_2:+50615585 | Msa0409690:intron |
| AATACCTGAGAGTAACACAG+AGG | 0.742310 | 3_2:-50612714 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATTAGAAATATCAT+CGG | - | chr3_2:50613897-50613916 | None:intergenic | 10.0% |
| !! | TTCTAATATTATTTATAATC+AGG | + | chr3_2:50613904-50613923 | Msa0409690:intron | 10.0% |
| !!! | TTTTTAAAATATATTGCTTT+GGG | - | chr3_2:50614839-50614858 | None:intergenic | 10.0% |
| !!! | ATTTTTAAAATATATTGCTT+TGG | - | chr3_2:50614840-50614859 | None:intergenic | 10.0% |
| !! | TTCTATACATATTATTATTA+AGG | + | chr3_2:50614865-50614884 | Msa0409690:intron | 10.0% |
| !! | TATTTAAATTAAACAATAAG+TGG | - | chr3_2:50616231-50616250 | None:intergenic | 10.0% |
| !!! | TTTTTTTAATTAAGAATCTA+CGG | - | chr3_2:50616749-50616768 | None:intergenic | 10.0% |
| !! | AATTTATGTTAGTATGAAAT+TGG | + | chr3_2:50613177-50613196 | Msa0409690:intron | 15.0% |
| !! | ATATTTATTACAAAACTTAC+AGG | + | chr3_2:50614025-50614044 | Msa0409690:intron | 15.0% |
| !!! | CATAAAATTTTATTGCTTTT+TGG | - | chr3_2:50614097-50614116 | None:intergenic | 15.0% |
| !! | AATAAAAATATTTGAATGAG+AGG | - | chr3_2:50614172-50614191 | None:intergenic | 15.0% |
| !! | TCTTGAATATACTATTATTA+TGG | + | chr3_2:50614471-50614490 | Msa0409690:intron | 15.0% |
| !!! | TTTTAAAATATATTGCTTTG+GGG | - | chr3_2:50614838-50614857 | None:intergenic | 15.0% |
| !! | ATAATAATATGTATAGAACT+CGG | - | chr3_2:50614863-50614882 | None:intergenic | 15.0% |
| !!! | GGATCATAATTTTTTTTTTT+TGG | + | chr3_2:50615103-50615122 | Msa0409690:intron | 15.0% |
| !! | ATGTATAGTTATAACTTATA+AGG | + | chr3_2:50615822-50615841 | Msa0409690:intron | 15.0% |
| !! | AAATAGTTGAAAATATATTG+TGG | + | chr3_2:50615891-50615910 | Msa0409690:intron | 15.0% |
| !! | TCATTATTATTATATTCTTC+AGG | + | chr3_2:50616062-50616081 | Msa0409690:intron | 15.0% |
| !!! | AAAAACTGGTTTTTTTAAAT+TGG | - | chr3_2:50616266-50616285 | None:intergenic | 15.0% |
| !!! | ATTTAAAAAAACCAGTTTTT+TGG | + | chr3_2:50616266-50616285 | Msa0409690:intron | 15.0% |
| !!! | ATAATTTTGAAATAATGAAG+CGG | - | chr3_2:50616424-50616443 | None:intergenic | 15.0% |
| !!! | AGATGATTTCATTTTTTATA+CGG | - | chr3_2:50616827-50616846 | None:intergenic | 15.0% |
| !!! | TTGAATACTTACAATTTTAT+CGG | - | chr3_2:50617120-50617139 | None:intergenic | 15.0% |
| !! | ATAGAATTAAGAAATAGTTG+AGG | - | chr3_2:50612881-50612900 | None:intergenic | 20.0% |
| !!! | TCAACTATTTCTTAATTCTA+TGG | + | chr3_2:50612880-50612899 | Msa0409690:intron | 20.0% |
| !!! | TACAAAATTGTGATTTGTTT+AGG | + | chr3_2:50613130-50613149 | Msa0409690:intron | 20.0% |
| !! | TTTCATACTAACATAAATTG+TGG | - | chr3_2:50613176-50613195 | None:intergenic | 20.0% |
| !! | TTGTAATAAATATTGAGCAA+TGG | - | chr3_2:50614018-50614037 | None:intergenic | 20.0% |
| !! | TATTCAAACAGAGAAATTAA+GGG | - | chr3_2:50614326-50614345 | None:intergenic | 20.0% |
| !! | AAATTGTATATATAGAGAAG+TGG | - | chr3_2:50614555-50614574 | None:intergenic | 20.0% |
| !! | ATATATACAATTTCTCAGTA+TGG | + | chr3_2:50614562-50614581 | Msa0409690:intron | 20.0% |
| !!! | TTCAACTATTTATTTAGAGT+TGG | - | chr3_2:50615882-50615901 | None:intergenic | 20.0% |
| !! | ACACTACAAAAATTTATCAA+AGG | - | chr3_2:50616452-50616471 | None:intergenic | 20.0% |
| !!! | TGTGAAAATTGATTATTTTG+AGG | + | chr3_2:50616568-50616587 | Msa0409690:intron | 20.0% |
| !!! | GAGAAATATTTTTTTCACAT+TGG | + | chr3_2:50616630-50616649 | Msa0409690:intron | 20.0% |
| !! | TTTCATATGAACATATCAAA+AGG | - | chr3_2:50616693-50616712 | None:intergenic | 20.0% |
| !!! | ATTTTCTAAAATAACTGATG+TGG | + | chr3_2:50616852-50616871 | Msa0409690:intron | 20.0% |
| !!! | TTTTCTAAAATAACTGATGT+GGG | + | chr3_2:50616853-50616872 | Msa0409690:intron | 20.0% |
| !! | AAGAACAGATTTAAAGTTAC+AGG | - | chr3_2:50612751-50612770 | None:intergenic | 25.0% |
| !!! | CTTCAATTGTATTGATTTCT+AGG | + | chr3_2:50612768-50612787 | Msa0409690:intron | 25.0% |
| ! | TATTTCTTAATTCTATGGCT+GGG | + | chr3_2:50612885-50612904 | Msa0409690:intron | 25.0% |
| !! | TCAAACTCAATTTGAAATGT+TGG | - | chr3_2:50613227-50613246 | None:intergenic | 25.0% |
| ! | CAAACTAGTTACAATTAAAG+GGG | - | chr3_2:50613266-50613285 | None:intergenic | 25.0% |
| ! | CCAAACTAGTTACAATTAAA+GGG | - | chr3_2:50613267-50613286 | None:intergenic | 25.0% |
| ! | TCCAAACTAGTTACAATTAA+AGG | - | chr3_2:50613268-50613287 | None:intergenic | 25.0% |
| ! | TTCTAACCACATTATTTGAA+GGG | - | chr3_2:50613314-50613333 | None:intergenic | 25.0% |
| ! | AACTCTACTTAGAACTTATA+AGG | + | chr3_2:50613370-50613389 | Msa0409690:intron | 25.0% |
| ! | TACTTATTTATTCTGCTACA+TGG | + | chr3_2:50613642-50613661 | Msa0409690:intron | 25.0% |
| ! | TCTTGTATCGAGAATTTATA+AGG | + | chr3_2:50613680-50613699 | Msa0409690:intron | 25.0% |
| ! | TTATTTATAATCAGGCAGAT+TGG | + | chr3_2:50613912-50613931 | Msa0409690:intron | 25.0% |
| ! | TATTTATAATCAGGCAGATT+GGG | + | chr3_2:50613913-50613932 | Msa0409690:intron | 25.0% |
| ! | TCAAATTTGAAAAGACATGA+AGG | + | chr3_2:50614140-50614159 | Msa0409690:intron | 25.0% |
| !! | TAAGTTGTTATTCTTGTTAG+TGG | + | chr3_2:50614231-50614250 | Msa0409690:intron | 25.0% |
| !! | TGTTTGGTGAATATAGTTTA+GGG | - | chr3_2:50614298-50614317 | None:intergenic | 25.0% |
| !! | ATGTTTGGTGAATATAGTTT+AGG | - | chr3_2:50614299-50614318 | None:intergenic | 25.0% |
| ! | GTATTCAAACAGAGAAATTA+AGG | - | chr3_2:50614327-50614346 | None:intergenic | 25.0% |
| !!! | TTTTCGTTTGCTTTATTCAT+TGG | - | chr3_2:50614445-50614464 | None:intergenic | 25.0% |
| ! | ATTATGAAGCAAATATAAGC+TGG | + | chr3_2:50614611-50614630 | Msa0409690:intron | 25.0% |
| ! | GTTATAAACAACCAAGAAAA+GGG | - | chr3_2:50614763-50614782 | None:intergenic | 25.0% |
| ! | TGTTATAAACAACCAAGAAA+AGG | - | chr3_2:50614764-50614783 | None:intergenic | 25.0% |
| ! | AAAATAGATTGAGTAAATCC+CGG | - | chr3_2:50614948-50614967 | None:intergenic | 25.0% |
| ! | CTATGAATATGACATAGTAA+TGG | + | chr3_2:50614990-50615009 | Msa0409690:intron | 25.0% |
| ! | ATTCATACAATTCAGATTGT+TGG | - | chr3_2:50615434-50615453 | None:intergenic | 25.0% |
| ! | TATATATTGAATACTGATGC+TGG | + | chr3_2:50615490-50615509 | Msa0409690:intron | 25.0% |
| ! | AATAAATAACAGAGTGAAGA+TGG | - | chr3_2:50615552-50615571 | None:intergenic | 25.0% |
| ! | AAATATCCTAATAGATGGAT+GGG | - | chr3_2:50615859-50615878 | None:intergenic | 25.0% |
| ! | AATATATTGTGGCTAAGTTA+TGG | + | chr3_2:50615902-50615921 | Msa0409690:intron | 25.0% |
| !! | TCTAAGAATGTAGTTTTTGA+AGG | + | chr3_2:50615970-50615989 | Msa0409690:intron | 25.0% |
| !! | ATTCAGAATGTAGTTTTTGA+AGG | + | chr3_2:50616112-50616131 | Msa0409690:intron | 25.0% |
| ! | TAGATTAGAAACCAAAAAAC+TGG | - | chr3_2:50616280-50616299 | None:intergenic | 25.0% |
| !! | TTCTTCTTCTTCTGAATTTT+TGG | + | chr3_2:50616307-50616326 | Msa0409690:intron | 25.0% |
| !! | ATTTTTGTAGTGTAGTTGTT+TGG | + | chr3_2:50616459-50616478 | Msa0409690:intron | 25.0% |
| ! | AGACTTATATGTATGATGTA+TGG | + | chr3_2:50616500-50616519 | Msa0409690:intron | 25.0% |
| ! | TTTCACATTTCAGTAGTAAT+TGG | - | chr3_2:50616555-50616574 | None:intergenic | 25.0% |
| ! | TTTGAGGACGAATTAAAAAA+TGG | + | chr3_2:50616584-50616603 | Msa0409690:intron | 25.0% |
| !!! | ATGATTAGCAAGTTCTAAAA+AGG | - | chr3_2:50616986-50617005 | None:intergenic | 25.0% |
| !! | TTTGTTGGCTGAAAAAAAAA+AGG | - | chr3_2:50617011-50617030 | None:intergenic | 25.0% |
| ! | AATCGATGTAAACTATCTAT+GGG | + | chr3_2:50617138-50617157 | Msa0409690:three_prime_UTR | 25.0% |
| AACGATGTAGATCTGAAAAA+GGG | - | chr3_2:50612647-50612666 | None:intergenic | 30.0% | |
| AAACGATGTAGATCTGAAAA+AGG | - | chr3_2:50612648-50612667 | None:intergenic | 30.0% | |
| ATCATAGAGACAATGATGAT+CGG | - | chr3_2:50612676-50612695 | None:intergenic | 30.0% | |
| TGTGATTGCATCTGAATTAT+AGG | + | chr3_2:50612833-50612852 | Msa0409690:intron | 30.0% | |
| ! | CTATTTCTTAATTCTATGGC+TGG | + | chr3_2:50612884-50612903 | Msa0409690:intron | 30.0% |
| !! | ATAATGGTGAGTTGATTCTT+TGG | + | chr3_2:50612963-50612982 | Msa0409690:intron | 30.0% |
| CCCTTTAATTGTAACTAGTT+TGG | + | chr3_2:50613264-50613283 | Msa0409690:intron | 30.0% | |
| GTTCTAACCACATTATTTGA+AGG | - | chr3_2:50613315-50613334 | None:intergenic | 30.0% | |
| TAGAGTTATAACCACATCTT+AGG | - | chr3_2:50613357-50613376 | None:intergenic | 30.0% | |
| ! | TGTATGGATGTATTTTGCTT+TGG | + | chr3_2:50613465-50613484 | Msa0409690:intron | 30.0% |
| TCTTATTACTGAATGTCTAC+TGG | + | chr3_2:50613495-50613514 | Msa0409690:intron | 30.0% | |
| CAGTAAAACTATACATAGCT+TGG | + | chr3_2:50613585-50613604 | Msa0409690:CDS | 30.0% | |
| AAAACTATACATAGCTTGGT+TGG | + | chr3_2:50613589-50613608 | Msa0409690:CDS | 30.0% | |
| AAACTATACATAGCTTGGTT+GGG | + | chr3_2:50613590-50613609 | Msa0409690:CDS | 30.0% | |
| TATCTGTTTATGACGTTCTA+AGG | + | chr3_2:50613717-50613736 | Msa0409690:intron | 30.0% | |
| GTATCTGTTGATACTTATTG+TGG | + | chr3_2:50613745-50613764 | Msa0409690:CDS | 30.0% | |
| GTAAATTGGATTGCCTTTAA+TGG | + | chr3_2:50613860-50613879 | Msa0409690:intron | 30.0% | |
| GGAAACTTATATGCCATTAA+AGG | - | chr3_2:50613876-50613895 | None:intergenic | 30.0% | |
| TAAATATTGAGCAATGGCTT+TGG | - | chr3_2:50614012-50614031 | None:intergenic | 30.0% | |
| AACTTACAGGTTCAATCTTT+AGG | + | chr3_2:50614038-50614057 | Msa0409690:intron | 30.0% | |
| ! | AATCTTTAGGAATGTATGAC+AGG | + | chr3_2:50614051-50614070 | Msa0409690:intron | 30.0% |
| ! | TTGTTATTCTTGTTAGTGGA+GGG | + | chr3_2:50614235-50614254 | Msa0409690:intron | 30.0% |
| ACTACATCATAACTGGATTA+CGG | - | chr3_2:50614269-50614288 | None:intergenic | 30.0% | |
| ! | AAAGGGAAGTATAATTGAAG+AGG | - | chr3_2:50614746-50614765 | None:intergenic | 30.0% |
| ! | CAATTATACTTCCCTTTTCT+TGG | + | chr3_2:50614749-50614768 | Msa0409690:intron | 30.0% |
| ! | TTCATACATTGACTACAAAC+AGG | - | chr3_2:50615064-50615083 | None:intergenic | 30.0% |
| CTGCACAAATTCCAAAAATA+AGG | - | chr3_2:50615174-50615193 | None:intergenic | 30.0% | |
| CTTACATGTGTAAACTGAAT+GGG | - | chr3_2:50615314-50615333 | None:intergenic | 30.0% | |
| CATAAATGGATGATGTTCAA+TGG | - | chr3_2:50615360-50615379 | None:intergenic | 30.0% | |
| TAGCAATCAGAATGCATAAA+TGG | - | chr3_2:50615374-50615393 | None:intergenic | 30.0% | |
| TGTGGATCATATATGATCAT+TGG | - | chr3_2:50615409-50615428 | None:intergenic | 30.0% | |
| !! | CGTAATTTGTTCTTTGTAAC+TGG | - | chr3_2:50615784-50615803 | None:intergenic | 30.0% |
| GAAATATCCTAATAGATGGA+TGG | - | chr3_2:50615860-50615879 | None:intergenic | 30.0% | |
| GTTGGAAATATCCTAATAGA+TGG | - | chr3_2:50615864-50615883 | None:intergenic | 30.0% | |
| AAACTACATTCTGAATGAAC+AGG | - | chr3_2:50616108-50616127 | None:intergenic | 30.0% | |
| TGAAGAATATATGATACCCA+GGG | - | chr3_2:50616146-50616165 | None:intergenic | 30.0% | |
| !!! | AGTGGACTAAAAGTACATTT+TGG | - | chr3_2:50616213-50616232 | None:intergenic | 30.0% |
| ATTCAGAAGAAGAAGAAAAG+AGG | - | chr3_2:50616304-50616323 | None:intergenic | 30.0% | |
| TCTCAAACAAAAACTTCATG+AGG | - | chr3_2:50616614-50616633 | None:intergenic | 30.0% | |
| !!! | ATTTTTTATACGGTTGACGT+GGG | - | chr3_2:50616817-50616836 | None:intergenic | 30.0% |
| !! | ATTAGCAAGTTCTAAAAAGG+CGG | - | chr3_2:50616983-50617002 | None:intergenic | 30.0% |
| CAATCGATGTAAACTATCTA+TGG | + | chr3_2:50617137-50617156 | Msa0409690:three_prime_UTR | 30.0% | |
| ATGTAAACTATCTATGGGAA+AGG | + | chr3_2:50617143-50617162 | Msa0409690:three_prime_UTR | 30.0% | |
| TGTAAACTATCTATGGGAAA+GGG | + | chr3_2:50617144-50617163 | Msa0409690:three_prime_UTR | 30.0% | |
| ACTCAATAGTCGTTCTCATT+CGG | + | chr3_2:50612591-50612610 | Msa0409690:five_prime_UTR | 35.0% | |
| ACGATGTAGATCTGAAAAAG+GGG | - | chr3_2:50612646-50612665 | None:intergenic | 35.0% | |
| ACAGTAAAGGGGAATTCAAA+CGG | - | chr3_2:50612816-50612835 | None:intergenic | 35.0% | |
| TCAGATGCAATCACAGTAAA+GGG | - | chr3_2:50612828-50612847 | None:intergenic | 35.0% | |
| TTCAGATGCAATCACAGTAA+AGG | - | chr3_2:50612829-50612848 | None:intergenic | 35.0% | |
| AGTCTGTTGCTGAAACATAA+TGG | + | chr3_2:50612947-50612966 | Msa0409690:intron | 35.0% | |
| CTCTAACCCTTCAAATAATG+TGG | + | chr3_2:50613305-50613324 | Msa0409690:intron | 35.0% | |
| ATGTGCATACAGATAGCATA+TGG | + | chr3_2:50613420-50613439 | Msa0409690:intron | 35.0% | |
| TCTACTGGATAAACTTCTTC+AGG | + | chr3_2:50613510-50613529 | Msa0409690:intron | 35.0% | |
| TTCTTCAGGAATTCTTCTTC+TGG | + | chr3_2:50613524-50613543 | Msa0409690:intron | 35.0% | |
| ! | ATTTTGTGTTCACGAAGTGT+TGG | + | chr3_2:50613778-50613797 | Msa0409690:CDS | 35.0% |
| !! | TTTTGTGTTCACGAAGTGTT+GGG | + | chr3_2:50613779-50613798 | Msa0409690:CDS | 35.0% |
| TGTGTTCACGAACTGTAAAT+TGG | + | chr3_2:50613846-50613865 | Msa0409690:intron | 35.0% | |
| TATAAGGAGGAAAAGTGATG+TGG | + | chr3_2:50613973-50613992 | Msa0409690:CDS | 35.0% | |
| ATAAGGAGGAAAAGTGATGT+GGG | + | chr3_2:50613974-50613993 | Msa0409690:CDS | 35.0% | |
| TTTAGGAATGTATGACAGGA+AGG | + | chr3_2:50614055-50614074 | Msa0409690:intron | 35.0% | |
| ! | GTTGTTATTCTTGTTAGTGG+AGG | + | chr3_2:50614234-50614253 | Msa0409690:intron | 35.0% |
| CTACATCATAACTGGATTAC+GGG | - | chr3_2:50614268-50614287 | None:intergenic | 35.0% | |
| GAGGATAACTACATCATAAC+TGG | - | chr3_2:50614276-50614295 | None:intergenic | 35.0% | |
| TTGGTGAATATAGTTTAGGG+AGG | - | chr3_2:50614295-50614314 | None:intergenic | 35.0% | |
| GAAATTAAGGGTGAGATGTT+TGG | - | chr3_2:50614314-50614333 | None:intergenic | 35.0% | |
| AATAGAAGTTTAGCGAAGCA+AGG | - | chr3_2:50614420-50614439 | None:intergenic | 35.0% | |
| GCTTCATAAAACACACCTTT+GGG | - | chr3_2:50615042-50615061 | None:intergenic | 35.0% | |
| AAAATTATGATCCCACCAGT+GGG | - | chr3_2:50615096-50615115 | None:intergenic | 35.0% | |
| AAAAATTATGATCCCACCAG+TGG | - | chr3_2:50615097-50615116 | None:intergenic | 35.0% | |
| GTAAACTGAATGGGAAAGTA+AGG | - | chr3_2:50615305-50615324 | None:intergenic | 35.0% | |
| GCTTACATGTGTAAACTGAA+TGG | - | chr3_2:50615315-50615334 | None:intergenic | 35.0% | |
| ! | ATATGATCATTGGCTAAGTG+AGG | - | chr3_2:50615399-50615418 | None:intergenic | 35.0% |
| TGCTGGAAGACTATGAAATA+TGG | + | chr3_2:50615507-50615526 | Msa0409690:intron | 35.0% | |
| AGTCATTGATGAGAACCTAT+AGG | + | chr3_2:50615693-50615712 | Msa0409690:intron | 35.0% | |
| GGAGATTGAAAATCACCTAT+AGG | - | chr3_2:50615711-50615730 | None:intergenic | 35.0% | |
| !!! | GGTTCAGGGCTTTTAAAATT+TGG | - | chr3_2:50615942-50615961 | None:intergenic | 35.0% |
| CTACATTCTTAGAGTCTGTT+TGG | - | chr3_2:50615963-50615982 | None:intergenic | 35.0% | |
| CTGAAGAATATATGATACCC+AGG | - | chr3_2:50616147-50616166 | None:intergenic | 35.0% | |
| CTGGGTATCATATATTCTTC+AGG | + | chr3_2:50616145-50616164 | Msa0409690:intron | 35.0% | |
| TACATTGTGGCTAATAAGCA+CGG | - | chr3_2:50616396-50616415 | None:intergenic | 35.0% | |
| TATTCAACCGTAGATTGTCA+TGG | + | chr3_2:50616772-50616791 | Msa0409690:intron | 35.0% | |
| !!! | CATTTTTTATACGGTTGACG+TGG | - | chr3_2:50616818-50616837 | None:intergenic | 35.0% |
| !! | GGTGCTGATTCTAAATTTGT+TGG | - | chr3_2:50617026-50617045 | None:intergenic | 35.0% |
| ACGGTAAAAGTCTATGTGAA+AGG | + | chr3_2:50617076-50617095 | Msa0409690:exon | 35.0% | |
| CGGTAAAAGTCTATGTGAAA+GGG | + | chr3_2:50617077-50617096 | Msa0409690:exon | 35.0% | |
| ! | AATAGAGCTCTGATAGATTC+TGG | + | chr3_2:50617176-50617195 | Msa0409690:three_prime_UTR | 35.0% |
| GAGATTGCAATATGTGAAAG+TGG | + | chr3_2:50617212-50617231 | Msa0409690:three_prime_UTR | 35.0% | |
| CGATGTAGATCTGAAAAAGG+GGG | - | chr3_2:50612645-50612664 | None:intergenic | 40.0% | |
| AATACCTGAGAGTAACACAG+AGG | - | chr3_2:50612717-50612736 | None:intergenic | 40.0% | |
| CAGATGCAATCACAGTAAAG+GGG | - | chr3_2:50612827-50612846 | None:intergenic | 40.0% | |
| TGAAAGCAGTTACCTGTGAA+CGG | - | chr3_2:50613053-50613072 | None:intergenic | 40.0% | |
| AGAGTCATATGCCTAAGATG+TGG | + | chr3_2:50613343-50613362 | Msa0409690:intron | 40.0% | |
| TACACAAATAGCCACGTGAA+TGG | - | chr3_2:50613449-50613468 | None:intergenic | 40.0% | |
| TTCACGTGGCTATTTGTGTA+TGG | + | chr3_2:50613449-50613468 | Msa0409690:intron | 40.0% | |
| ! | GGGATTGATGATCTATAAGC+AGG | + | chr3_2:50613799-50613818 | Msa0409690:CDS | 40.0% |
| ATCTATAAGCAGGCAGAGTT+TGG | + | chr3_2:50613809-50613828 | Msa0409690:CDS | 40.0% | |
| TGCGTTGCTTGGAACTTATA+AGG | + | chr3_2:50613957-50613976 | Msa0409690:CDS | 40.0% | |
| GTTGCTTGGAACTTATAAGG+AGG | + | chr3_2:50613960-50613979 | Msa0409690:CDS | 40.0% | |
| AATCAGCATGATGTTCTAGC+AGG | - | chr3_2:50614378-50614397 | None:intergenic | 40.0% | |
| ATGTCTGAGGAAAAAGGGAA+TGG | - | chr3_2:50614532-50614551 | None:intergenic | 40.0% | |
| AGTGGATGTCTGAGGAAAAA+GGG | - | chr3_2:50614537-50614556 | None:intergenic | 40.0% | |
| AAGTGGATGTCTGAGGAAAA+AGG | - | chr3_2:50614538-50614557 | None:intergenic | 40.0% | |
| TATAGAGAAGTGGATGTCTG+AGG | - | chr3_2:50614545-50614564 | None:intergenic | 40.0% | |
| ! | TAGTACAGCCTGTTGATTAG+TGG | + | chr3_2:50614637-50614656 | Msa0409690:intron | 40.0% |
| CTTACAACCTGTAATCCCAA+AGG | + | chr3_2:50615024-50615043 | Msa0409690:intron | 40.0% | |
| !! | AAACACACCTTTGGGATTAC+AGG | - | chr3_2:50615034-50615053 | None:intergenic | 40.0% |
| GGCTTCATAAAACACACCTT+TGG | - | chr3_2:50615043-50615062 | None:intergenic | 40.0% | |
| TATGAAACCTGTAATCCCAC+TGG | + | chr3_2:50615078-50615097 | Msa0409690:intron | 40.0% | |
| TCTGTTCTTGACTCTCTTGT+AGG | + | chr3_2:50615141-50615160 | Msa0409690:intron | 40.0% | |
| !!! | TAGGAGGAGGACCTTATTTT+TGG | + | chr3_2:50615160-50615179 | Msa0409690:intron | 40.0% |
| TGCAGCTATAGATGCAGAAA+GGG | + | chr3_2:50615189-50615208 | Msa0409690:intron | 40.0% | |
| GATCCAGAATGTTGAGTCTT+TGG | + | chr3_2:50615211-50615230 | Msa0409690:CDS | 40.0% | |
| CGATTATATCCTGATCCATC+TGG | + | chr3_2:50615236-50615255 | Msa0409690:CDS | 40.0% | |
| AAGCTTGCAAATAGTCCAGA+TGG | - | chr3_2:50615254-50615273 | None:intergenic | 40.0% | |
| CAATTCAGATTGTTGGTGTG+TGG | - | chr3_2:50615427-50615446 | None:intergenic | 40.0% | |
| AGCCACATACGTGAAAAACA+GGG | - | chr3_2:50615463-50615482 | None:intergenic | 40.0% | |
| TAGCCACATACGTGAAAAAC+AGG | - | chr3_2:50615464-50615483 | None:intergenic | 40.0% | |
| TTTCTTTAGCAGACAACCAG+TGG | + | chr3_2:50615583-50615602 | Msa0409690:intron | 40.0% | |
| TTCTTTAGCAGACAACCAGT+GGG | + | chr3_2:50615584-50615603 | Msa0409690:intron | 40.0% | |
| TGCAAAGAGATGACCTATCA+AGG | + | chr3_2:50615617-50615636 | Msa0409690:CDS | 40.0% | |
| CATAACAGCAGCAGAACAAA+TGG | - | chr3_2:50615732-50615751 | None:intergenic | 40.0% | |
| TAGCAACCCATCCATCTATT+AGG | + | chr3_2:50615850-50615869 | Msa0409690:intron | 40.0% | |
| ! | CTTAGAGTCTGTTTGGTTCA+GGG | - | chr3_2:50615956-50615975 | None:intergenic | 40.0% |
| ! | TCTTAGAGTCTGTTTGGTTC+AGG | - | chr3_2:50615957-50615976 | None:intergenic | 40.0% |
| !! | TGTAGTTTTTGAAGGCAAGC+TGG | + | chr3_2:50615978-50615997 | Msa0409690:intron | 40.0% |
| TGAAGCGGTGATTTACATTG+TGG | - | chr3_2:50616409-50616428 | None:intergenic | 40.0% | |
| ACGACTATTGAGTGAGTGCT+TGG | - | chr3_2:50612584-50612603 | None:intergenic | 45.0% | |
| GTAGATCTGAAAAAGGGGGA+CGG | - | chr3_2:50612641-50612660 | None:intergenic | 45.0% | |
| ! | ATCTCCTCTGTGTTACTCTC+AGG | + | chr3_2:50612710-50612729 | Msa0409690:CDS | 45.0% |
| AGGAATTCTTCTTCTGGCAG+AGG | + | chr3_2:50613530-50613549 | Msa0409690:intron | 45.0% | |
| ATAGCTTGGTTGGGTTCTTC+TGG | + | chr3_2:50613599-50613618 | Msa0409690:CDS | 45.0% | |
| TAGCTTGGTTGGGTTCTTCT+GGG | + | chr3_2:50613600-50613619 | Msa0409690:CDS | 45.0% | |
| GAGGAAAAGTGATGTGGGTA+TGG | + | chr3_2:50613979-50613998 | Msa0409690:CDS | 45.0% | |
| !! | TGCTGATTCAGTTGCCTCAT+TGG | + | chr3_2:50614390-50614409 | Msa0409690:CDS | 45.0% |
| ATTCCACGCCACTAATCAAC+AGG | - | chr3_2:50614648-50614667 | None:intergenic | 45.0% | |
| CCACTTTCGCATAGAGATAC+CGG | + | chr3_2:50614926-50614945 | Msa0409690:intron | 45.0% | |
| CACTTTCGCATAGAGATACC+GGG | + | chr3_2:50614927-50614946 | Msa0409690:intron | 45.0% | |
| AAACCTGTAATCCCACTGGT+GGG | + | chr3_2:50615082-50615101 | Msa0409690:intron | 45.0% | |
| GTTCTTGACTCTCTTGTAGG+AGG | + | chr3_2:50615144-50615163 | Msa0409690:intron | 45.0% | |
| GTGCAGCTATAGATGCAGAA+AGG | + | chr3_2:50615188-50615207 | Msa0409690:intron | 45.0% | |
| GTGCCAAAGACTCAACATTC+TGG | - | chr3_2:50615217-50615236 | None:intergenic | 45.0% | |
| GCAAATAGTCCAGATGGATC+AGG | - | chr3_2:50615248-50615267 | None:intergenic | 45.0% | |
| !! | CTCCCTGTTTTTCACGTATG+TGG | + | chr3_2:50615458-50615477 | Msa0409690:intron | 45.0% |
| TCTTTAGCAGACAACCAGTG+GGG | + | chr3_2:50615585-50615604 | Msa0409690:intron | 45.0% | |
| TGACCTATCAAGGACTCTGA+TGG | + | chr3_2:50615627-50615646 | Msa0409690:CDS | 45.0% | |
| GTACCATCAGAGTCCTTGAT+AGG | - | chr3_2:50615633-50615652 | None:intergenic | 45.0% | |
| GGACTTCTATCGAGACTTTG+TGG | + | chr3_2:50615656-50615675 | Msa0409690:intron | 45.0% | |
| CTGGCGTGTTTCATTCATTC+AGG | + | chr3_2:50615997-50616016 | Msa0409690:intron | 45.0% | |
| !! | TTTTGAAGGCAAACAGACCC+TGG | + | chr3_2:50616126-50616145 | Msa0409690:intron | 45.0% |
| TTTGAAGGCAAACAGACCCT+GGG | + | chr3_2:50616127-50616146 | Msa0409690:intron | 45.0% | |
| TCTACGGTCGAATGCATATG+TGG | - | chr3_2:50616733-50616752 | None:intergenic | 45.0% | |
| CTACGAGCCATGACAATCTA+CGG | - | chr3_2:50616782-50616801 | None:intergenic | 45.0% | |
| GTCATGGCTCGTAGATTCTT+AGG | + | chr3_2:50616788-50616807 | Msa0409690:intron | 45.0% | |
| ! | ATCCACTTCTCATGGCGTTT+TGG | - | chr3_2:50617047-50617066 | None:intergenic | 45.0% |
| CCATGAGAAGTGGATAAGAC+CGG | + | chr3_2:50617052-50617071 | Msa0409690:CDS | 45.0% | |
| ! | CACATAGACTTTTACCGTGC+CGG | - | chr3_2:50617074-50617093 | None:intergenic | 45.0% |
| AAGCAGTTACCTGTGAACGG+CGG | - | chr3_2:50613050-50613069 | None:intergenic | 50.0% | |
| GCATATGGATGCCATTCACG+TGG | + | chr3_2:50613435-50613454 | Msa0409690:intron | 50.0% | |
| ! | TGGGTTCTTCTGGGAAAGAC+TGG | + | chr3_2:50613609-50613628 | Msa0409690:CDS | 50.0% |
| CGAAGCAAGGACTACCAATG+AGG | - | chr3_2:50614407-50614426 | None:intergenic | 50.0% | |
| CCGGTATCTCTATGCGAAAG+TGG | - | chr3_2:50614929-50614948 | None:intergenic | 50.0% | |
| GAAACCTGTAATCCCACTGG+TGG | + | chr3_2:50615081-50615100 | Msa0409690:intron | 50.0% | |
| CTTGACTCTCTTGTAGGAGG+AGG | + | chr3_2:50615147-50615166 | Msa0409690:intron | 50.0% | |
| TCAAGGACTCTGATGGTACG+TGG | + | chr3_2:50615634-50615653 | Msa0409690:intron | 50.0% | |
| CAAGGACTCTGATGGTACGT+GGG | + | chr3_2:50615635-50615654 | Msa0409690:intron | 50.0% | |
| CACCAAAACGCCATGAGAAG+TGG | + | chr3_2:50617042-50617061 | Msa0409690:CDS | 50.0% | |
| ! | CCGGTCTTATCCACTTCTCA+TGG | - | chr3_2:50617055-50617074 | None:intergenic | 50.0% |
| AGAAGTGGATAAGACCGGCA+CGG | + | chr3_2:50617057-50617076 | Msa0409690:CDS | 50.0% | |
| TTGTTCTTGCCGCCGTTCAC+AGG | + | chr3_2:50613038-50613057 | Msa0409690:intron | 55.0% | |
| GCAGATTGGGAAGCAGTACG+AGG | + | chr3_2:50613926-50613945 | Msa0409690:CDS | 55.0% | |
| AGGTGCACTTGTGCGTTGCT+TGG | + | chr3_2:50613946-50613965 | Msa0409690:CDS | 55.0% | |
| ! | CAGCCTGTTGATTAGTGGCG+TGG | + | chr3_2:50614642-50614661 | Msa0409690:intron | 55.0% |
| GATCCCACCAGTGGGATTAC+AGG | - | chr3_2:50615088-50615107 | None:intergenic | 55.0% | |
| TTGCACATGAGCATCCCCAC+TGG | - | chr3_2:50615602-50615621 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 50612581 | 50617261 | 50612581 | ID=Msa0409690;Name=Msa0409690 |
| chr3_2 | mRNA | 50612581 | 50617261 | 50612581 | ID=Msa0409690-mRNA-1;Parent=Msa0409690;Name=Msa0409690-mRNA-1;_AED=0.23;_eAED=0.23;_QI=110|0.28|0.37|0.87|1|1|8|179|210 |
| chr3_2 | exon | 50612581 | 50612731 | 50612581 | ID=Msa0409690-mRNA-1:exon:9979;Parent=Msa0409690-mRNA-1 |
| chr3_2 | exon | 50613532 | 50613630 | 50613532 | ID=Msa0409690-mRNA-1:exon:9980;Parent=Msa0409690-mRNA-1 |
| chr3_2 | exon | 50613739 | 50613859 | 50613739 | ID=Msa0409690-mRNA-1:exon:9981;Parent=Msa0409690-mRNA-1 |
| chr3_2 | exon | 50613926 | 50614000 | 50613926 | ID=Msa0409690-mRNA-1:exon:9982;Parent=Msa0409690-mRNA-1 |
| chr3_2 | exon | 50614352 | 50614411 | 50614352 | ID=Msa0409690-mRNA-1:exon:9983;Parent=Msa0409690-mRNA-1 |
| chr3_2 | exon | 50615206 | 50615328 | 50615206 | ID=Msa0409690-mRNA-1:exon:9984;Parent=Msa0409690-mRNA-1 |
| chr3_2 | exon | 50615595 | 50615648 | 50615595 | ID=Msa0409690-mRNA-1:exon:9985;Parent=Msa0409690-mRNA-1 |
| chr3_2 | exon | 50617023 | 50617261 | 50617023 | ID=Msa0409690-mRNA-1:exon:9986;Parent=Msa0409690-mRNA-1 |
| chr3_2 | five_prime_UTR | 50612581 | 50612690 | 50612581 | ID=Msa0409690-mRNA-1:five_prime_utr;Parent=Msa0409690-mRNA-1 |
| chr3_2 | CDS | 50612691 | 50612731 | 50612691 | ID=Msa0409690-mRNA-1:cds;Parent=Msa0409690-mRNA-1 |
| chr3_2 | CDS | 50613532 | 50613630 | 50613532 | ID=Msa0409690-mRNA-1:cds;Parent=Msa0409690-mRNA-1 |
| chr3_2 | CDS | 50613739 | 50613859 | 50613739 | ID=Msa0409690-mRNA-1:cds;Parent=Msa0409690-mRNA-1 |
| chr3_2 | CDS | 50613926 | 50614000 | 50613926 | ID=Msa0409690-mRNA-1:cds;Parent=Msa0409690-mRNA-1 |
| chr3_2 | CDS | 50614352 | 50614411 | 50614352 | ID=Msa0409690-mRNA-1:cds;Parent=Msa0409690-mRNA-1 |
| chr3_2 | CDS | 50615206 | 50615328 | 50615206 | ID=Msa0409690-mRNA-1:cds;Parent=Msa0409690-mRNA-1 |
| chr3_2 | CDS | 50615595 | 50615648 | 50615595 | ID=Msa0409690-mRNA-1:cds;Parent=Msa0409690-mRNA-1 |
| chr3_2 | CDS | 50617023 | 50617082 | 50617023 | ID=Msa0409690-mRNA-1:cds;Parent=Msa0409690-mRNA-1 |
| chr3_2 | three_prime_UTR | 50617083 | 50617261 | 50617083 | ID=Msa0409690-mRNA-1:three_prime_utr;Parent=Msa0409690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
