Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091120 | XP_024628210.2 | 84.479 | 509 | 25 | 4 | 1 | 509 | 14 | 468 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091120 | sp|Q8GWA9|PP157_ARATH | 49.887 | 443 | 206 | 6 | 66 | 505 | 76 | 505 | 2.46e-144 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091120 | A0A396K3J9 | 84.479 | 509 | 25 | 4 | 1 | 509 | 14 | 468 | 0.0 | 833 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047400 | Msa0091120 | 0.804783 | 1.830294e-49 | -8.615850e-47 |
| Msa0076100 | Msa0091120 | 0.800049 | 1.729661e-48 | -8.615850e-47 |
| Msa0091120 | Msa0133390 | 0.805939 | 1.047692e-49 | -8.615850e-47 |
| Msa0091120 | Msa0168960 | 0.812448 | 4.218303e-51 | -8.615850e-47 |
| Msa0091120 | Msa0181380 | 0.808995 | 2.355116e-50 | -8.615850e-47 |
| Msa0091120 | Msa0207150 | 0.803716 | 3.052699e-49 | -8.615850e-47 |
| Msa0091120 | Msa0258380 | 0.809074 | 2.264766e-50 | -8.615850e-47 |
| Msa0091120 | Msa0258410 | 0.829705 | 4.432694e-55 | -8.615850e-47 |
| Msa0091120 | Msa0266010 | 0.808134 | 3.594886e-50 | -8.615850e-47 |
| Msa0091120 | Msa0288300 | 0.805291 | 1.432892e-49 | -8.615850e-47 |
| Msa0091120 | Msa0303950 | 0.813515 | 2.462055e-51 | -8.615850e-47 |
| Msa0091120 | Msa0323790 | 0.801060 | 1.075801e-48 | -8.615850e-47 |
| Msa0091120 | Msa0335740 | 0.824613 | 7.340856e-54 | -8.615850e-47 |
| Msa0091120 | Msa0340440 | 0.824138 | 9.495071e-54 | -8.615850e-47 |
| Msa0091120 | Msa0383110 | 0.834409 | 3.047683e-56 | -8.615850e-47 |
| Msa0091120 | Msa0415860 | 0.811583 | 6.511092e-51 | -8.615850e-47 |
| Msa0091120 | Msa0427750 | 0.809496 | 1.838872e-50 | -8.615850e-47 |
| Msa0091120 | Msa0459970 | 0.825794 | 3.858791e-54 | -8.615850e-47 |
| Msa0091120 | Msa0472260 | 0.801889 | 7.277465e-49 | -8.615850e-47 |
| Msa0091120 | Msa0510540 | 0.803808 | 2.921435e-49 | -8.615850e-47 |
| Msa0091120 | Msa0518580 | 0.809021 | 2.324611e-50 | -8.615850e-47 |
| Msa0091120 | Msa0521190 | 0.816952 | 4.241664e-52 | -8.615850e-47 |
| Msa0091120 | Msa0524570 | 0.839473 | 1.551343e-57 | -8.615850e-47 |
| Msa0091120 | Msa0528830 | 0.823846 | 1.111632e-53 | -8.615850e-47 |
| Msa0091120 | Msa0531270 | 0.802192 | 6.303469e-49 | -8.615850e-47 |
| Msa0091120 | Msa0569540 | 0.814681 | 1.361201e-51 | -8.615850e-47 |
| Msa0091120 | Msa0589680 | 0.809078 | 2.260550e-50 | -8.615850e-47 |
| Msa0091120 | Msa0610300 | 0.825140 | 5.514981e-54 | -8.615850e-47 |
| Msa0091120 | Msa0628440 | 0.814497 | 1.494936e-51 | -8.615850e-47 |
| Msa0091120 | Msa0663580 | 0.800714 | 1.266303e-48 | -8.615850e-47 |
| Msa0091120 | Msa0692710 | 0.806459 | 8.141383e-50 | -8.615850e-47 |
| Msa0091120 | Msa0879820 | 0.830626 | 2.641993e-55 | -8.615850e-47 |
| Msa0091120 | Msa0934800 | 0.800782 | 1.226474e-48 | -8.615850e-47 |
| Msa0091120 | Msa1040070 | 0.805525 | 1.280129e-49 | -8.615850e-47 |
| Msa0091120 | Msa1092430 | 0.804119 | 2.517278e-49 | -8.615850e-47 |
| Msa0091120 | Msa1198870 | 0.820875 | 5.443357e-53 | -8.615850e-47 |
| Msa0091120 | Msa1254990 | 0.815966 | 7.051929e-52 | -8.615850e-47 |
| Msa0091120 | Msa1267390 | 0.809890 | 1.512923e-50 | -8.615850e-47 |
| Msa0091120 | Msa1293060 | 0.825469 | 4.607677e-54 | -8.615850e-47 |
| Msa0091120 | Msa1326800 | 0.812544 | 4.018878e-51 | -8.615850e-47 |
| Msa0091120 | Msa1411820 | 0.800229 | 1.589770e-48 | -8.615850e-47 |
| Msa0091120 | Msa1422900 | 0.819623 | 1.053787e-52 | -8.615850e-47 |
| Msa0091120 | Msa1428050 | 0.808541 | 2.944013e-50 | -8.615850e-47 |
| Msa0091120 | Msa1456170 | 0.819350 | 1.216430e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091120 | MtrunA17_Chr1g0211501 | 84.479 | 509 | 25 | 4 | 1 | 509 | 14 | 468 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091120 | AT2G17033.4 | 49.887 | 443 | 206 | 6 | 66 | 505 | 41 | 470 | 1.13e-145 | 426 |
| Msa0091120 | AT2G17033.1 | 49.887 | 443 | 206 | 6 | 66 | 505 | 75 | 504 | 2.03e-145 | 427 |
| Msa0091120 | AT2G17033.2 | 49.887 | 443 | 206 | 6 | 66 | 505 | 76 | 505 | 2.50e-145 | 427 |
| Msa0091120 | AT2G17033.3 | 49.887 | 443 | 206 | 6 | 66 | 505 | 72 | 501 | 2.82e-145 | 426 |
Find 140 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCTGGGTTCAGCTTATT+TGG | 0.208986 | 1_2:+73259524 | Msa0091120:CDS |
| AATATGATTCTTTCAAGTTT+TGG | 0.242120 | 1_2:+73259216 | Msa0091120:CDS |
| GGATTCTAAAGAGGTGAAAT+TGG | 0.277238 | 1_2:+73259488 | Msa0091120:CDS |
| AACCCAGCTTCGGAGCTGTT+TGG | 0.290271 | 1_2:+73258253 | Msa0091120:CDS |
| GAGGTGGTGGTGAGCGGTGG+TGG | 0.291634 | 1_2:-73258579 | None:intergenic |
| AGTGGAGAGTAGTACGGATT+TGG | 0.307534 | 1_2:-73258537 | None:intergenic |
| TGAAGTAGCTTCGGAAATTA+AGG | 0.315472 | 1_2:-73258806 | None:intergenic |
| ACCCAGCTTCGGAGCTGTTT+GGG | 0.327268 | 1_2:+73258254 | Msa0091120:CDS |
| CTTACAAGGATGAGGAATTC+TGG | 0.337094 | 1_2:+73259273 | Msa0091120:CDS |
| TGTTGTGGATTTGAATGATT+TGG | 0.343073 | 1_2:+73259359 | Msa0091120:CDS |
| AAGGTAAGGCTGTCAAAATT+TGG | 0.346114 | 1_2:+73259757 | Msa0091120:CDS |
| GTTGATGAAATGGAGAATAA+TGG | 0.350749 | 1_2:+73259168 | Msa0091120:CDS |
| TGCCGTGACTTTCTTGAAGC+TGG | 0.351306 | 1_2:-73258325 | None:intergenic |
| GCCGGTTTGAGAAGCGCGTT+TGG | 0.359029 | 1_2:-73258890 | None:intergenic |
| CTTATTTGGTTATGTTGCTT+TGG | 0.360164 | 1_2:+73259538 | Msa0091120:CDS |
| AGTATGTGGAAATGGTTTCT+TGG | 0.378531 | 1_2:+73259250 | Msa0091120:CDS |
| AACAGCTCCGAAGCTGGGTT+TGG | 0.380481 | 1_2:-73258250 | None:intergenic |
| GGAAATTAAGGTCTGGGATT+CGG | 0.380524 | 1_2:-73258794 | None:intergenic |
| GAGATATTCGGTATTGGTAT+TGG | 0.381717 | 1_2:-73258489 | None:intergenic |
| TTTGTATGGATATGGAAGAT+TGG | 0.382413 | 1_2:+73259119 | Msa0091120:CDS |
| GCCTCGTGAGGCTGAGAATC+TGG | 0.382565 | 1_2:+73259023 | Msa0091120:CDS |
| CGGTGTAGCGTTTGTGTTTG+TGG | 0.383943 | 1_2:-73258774 | None:intergenic |
| GGCCCAAACAGCTCCGAAGC+TGG | 0.389642 | 1_2:-73258256 | None:intergenic |
| TTGATGAAATGGAGAATAAT+GGG | 0.391709 | 1_2:+73259169 | Msa0091120:CDS |
| TGATTTCATTGTATTATGAA+TGG | 0.392007 | 1_2:+73259801 | Msa0091120:exon |
| TTCGGAGCTGTTTGGGCCCA+CGG | 0.392287 | 1_2:+73258261 | Msa0091120:CDS |
| GTGGAGAGTAGTACGGATTT+GGG | 0.400880 | 1_2:-73258536 | None:intergenic |
| ATGGGAAGCTACGGTGGTTA+AGG | 0.401506 | 1_2:+73259422 | Msa0091120:CDS |
| TTGTATGGATATGGAAGATT+GGG | 0.404726 | 1_2:+73259120 | Msa0091120:CDS |
| AGAGAGGAGGTGAGTGAGAG+TGG | 0.405631 | 1_2:-73258555 | None:intergenic |
| GAACAGAGTTGTTGATGAAA+TGG | 0.410686 | 1_2:+73259158 | Msa0091120:CDS |
| TTTGGTTATGTTGCTTTGGT+TGG | 0.411930 | 1_2:+73259542 | Msa0091120:CDS |
| TGAGGCTGAGAATCTGGTTC+GGG | 0.416550 | 1_2:+73259029 | Msa0091120:CDS |
| GCCGTGACTTTCTTGAAGCT+GGG | 0.416687 | 1_2:-73258324 | None:intergenic |
| GGTGAGCGGTGGTGGGAGAG+AGG | 0.418500 | 1_2:-73258571 | None:intergenic |
| AGCGTTTGTGTTTGTGGAGT+AGG | 0.421612 | 1_2:-73258768 | None:intergenic |
| TCACGAGGAGTATGTGGAAA+TGG | 0.423732 | 1_2:+73259242 | Msa0091120:CDS |
| AAGCTGGGAATTGTGGAGTT+GGG | 0.424149 | 1_2:-73258309 | None:intergenic |
| AGCTTCGGAAATTAAGGTCT+GGG | 0.429865 | 1_2:-73258800 | None:intergenic |
| ACGAATGAGATATTCGGTAT+TGG | 0.429996 | 1_2:-73258495 | None:intergenic |
| TTTAAGACGAAGTACCTGTT+TGG | 0.434507 | 1_2:-73258390 | None:intergenic |
| CTCAACTCCAAACCCAGCTT+CGG | 0.440584 | 1_2:+73258243 | Msa0091120:CDS |
| GCGTTTGTGTTTGTGGAGTA+GGG | 0.442569 | 1_2:-73258767 | None:intergenic |
| GAATTTACGAATGAGATATT+CGG | 0.445371 | 1_2:-73258501 | None:intergenic |
| TCTCTTCTATGCAAAACTCT+TGG | 0.446048 | 1_2:+73258858 | Msa0091120:CDS |
| AGGTGGTGGTGAGCGGTGGT+GGG | 0.448227 | 1_2:-73258578 | None:intergenic |
| GTGAGGCTGAGAATCTGGTT+CGG | 0.450440 | 1_2:+73259028 | Msa0091120:CDS |
| GGTTATGTTGCTTTGGTTGG+AGG | 0.453621 | 1_2:+73259545 | Msa0091120:CDS |
| TAGCTTCGGAAATTAAGGTC+TGG | 0.456742 | 1_2:-73258801 | None:intergenic |
| CTGCTTTGTTGCCAAAGGTA+AGG | 0.456812 | 1_2:+73259743 | Msa0091120:CDS |
| TGGGTTTGGAGTTGAGGAGG+AGG | 0.457009 | 1_2:-73258236 | None:intergenic |
| CTGAAATCACTGTGGTCTGT+GGG | 0.457071 | 1_2:+73259613 | Msa0091120:CDS |
| TCCAAACGCGCTTCTCAAAC+CGG | 0.458542 | 1_2:+73258889 | Msa0091120:CDS |
| CGAAGCTGGGTTTGGAGTTG+AGG | 0.458757 | 1_2:-73258242 | None:intergenic |
| GTCACGGCAAATTATGCATT+GGG | 0.460223 | 1_2:+73258339 | Msa0091120:CDS |
| CAACATTCCTCATTATCGTT+GGG | 0.462227 | 1_2:-73259341 | None:intergenic |
| GTGGAGTAGGGTGATTAAAT+CGG | 0.462337 | 1_2:-73258755 | None:intergenic |
| AAAGTCCACTCAGGATTGAT+AGG | 0.466016 | 1_2:+73259709 | Msa0091120:CDS |
| GGTATTGGTATTGGTGTTTG+TGG | 0.466026 | 1_2:-73258480 | None:intergenic |
| TTAAATCGGCGATGATGGTT+GGG | 0.470625 | 1_2:-73258741 | None:intergenic |
| ATCACTGTGGTCTGTGGGGT+TGG | 0.474623 | 1_2:+73259618 | Msa0091120:CDS |
| GGTGATTAAATCGGCGATGA+TGG | 0.475107 | 1_2:-73258746 | None:intergenic |
| GAGTAGTACGGATTTGGGTG+AGG | 0.475242 | 1_2:-73258531 | None:intergenic |
| TCTTTAAGCAATACTTTGAC+CGG | 0.476216 | 1_2:-73259669 | None:intergenic |
| GCTTATGAATCCATGGTTAG+TGG | 0.476513 | 1_2:+73258982 | Msa0091120:CDS |
| TTTCTTGAAGCTGGGAATTG+TGG | 0.478358 | 1_2:-73258316 | None:intergenic |
| GGGCGAGAGAAGAGAGGTGG+TGG | 0.481844 | 1_2:-73258592 | None:intergenic |
| AGTGAGAGTGGAGAGTAGTA+CGG | 0.485591 | 1_2:-73258543 | None:intergenic |
| ATTAAATCGGCGATGATGGT+TGG | 0.492033 | 1_2:-73258742 | None:intergenic |
| AAATGGTTTCTTGGCTTACA+AGG | 0.492833 | 1_2:+73259259 | Msa0091120:CDS |
| AGAGTTGTTGAATGTGTGTA+TGG | 0.492964 | 1_2:+73259395 | Msa0091120:CDS |
| TTGAAGAGGAAGTGTGAAGA+AGG | 0.494562 | 1_2:-73258942 | None:intergenic |
| GAAGCTGGGAATTGTGGAGT+TGG | 0.496289 | 1_2:-73258310 | None:intergenic |
| CGTTGGGCAAGAATTTGAAA+CGG | 0.501944 | 1_2:-73259325 | None:intergenic |
| TTATAAGTTCTAACAGAAAA+CGG | 0.505009 | 1_2:-73259300 | None:intergenic |
| AAATTTGGTTATGTGAATTG+AGG | 0.506066 | 1_2:+73259772 | Msa0091120:CDS |
| GAGCTGTTTGGGCCCACGGT+GGG | 0.507584 | 1_2:+73258265 | Msa0091120:CDS |
| ACAACATTCCTCATTATCGT+TGG | 0.508259 | 1_2:-73259342 | None:intergenic |
| GGATTTGCATGGATTTCACC+TGG | 0.508564 | 1_2:+73259509 | Msa0091120:CDS |
| GCCCAAACAGCTCCGAAGCT+GGG | 0.509459 | 1_2:-73258255 | None:intergenic |
| GAGCGGTGGTGGGAGAGAGG+AGG | 0.511598 | 1_2:-73258568 | None:intergenic |
| TGGAATTCACGAGGAGTATG+TGG | 0.512841 | 1_2:+73259236 | Msa0091120:CDS |
| TTTCTTGGCTTACAAGGATG+AGG | 0.513035 | 1_2:+73259265 | Msa0091120:CDS |
| ACTCCACCGCTATTCCAAAC+AGG | 0.514918 | 1_2:+73258376 | Msa0091120:CDS |
| TGAATGTGTGTATGGAAGGA+TGG | 0.520905 | 1_2:+73259403 | Msa0091120:CDS |
| CGTTGCACTCTAACGAAACA+AGG | 0.530147 | 1_2:+73258431 | Msa0091120:CDS |
| AGTCACGGCAAATTATGCAT+TGG | 0.534142 | 1_2:+73258338 | Msa0091120:CDS |
| AGAGAGGTGGTGGTGAGCGG+TGG | 0.535945 | 1_2:-73258582 | None:intergenic |
| TTTAAACAAACAGATGGTGG+TGG | 0.536003 | 1_2:+73259054 | Msa0091120:CDS |
| TTGTGGAGTTGGGGAAAACG+TGG | 0.536060 | 1_2:-73258299 | None:intergenic |
| GCTGAAATCACTGTGGTCTG+TGG | 0.537614 | 1_2:+73259612 | Msa0091120:CDS |
| TTTCGATGAGGTGATGGTGT+GGG | 0.539150 | 1_2:+73259467 | Msa0091120:CDS |
| ATTCTTGCCCAACGATAATG+AGG | 0.542535 | 1_2:+73259334 | Msa0091120:CDS |
| AGCTGGGAATTGTGGAGTTG+GGG | 0.546834 | 1_2:-73258308 | None:intergenic |
| GAGGTGAAATTGGATTTGCA+TGG | 0.550734 | 1_2:+73259498 | Msa0091120:CDS |
| CGGGAATTTAAACAAACAGA+TGG | 0.561502 | 1_2:+73259048 | Msa0091120:CDS |
| GCGTTTGACGTAAATTGAAG+AGG | 0.567328 | 1_2:-73258956 | None:intergenic |
| TTGTTGAATGTGTGTATGGA+AGG | 0.568777 | 1_2:+73259399 | Msa0091120:CDS |
| GATTTGCATGGATTTCACCT+GGG | 0.577909 | 1_2:+73259510 | Msa0091120:CDS |
| AGCTGGGTTTGGAGTTGAGG+AGG | 0.578160 | 1_2:-73258239 | None:intergenic |
| CGGGGAGGGCGAGAGAAGAG+AGG | 0.578723 | 1_2:-73258598 | None:intergenic |
| ACGCAGAGCTTATGAATCCA+TGG | 0.582181 | 1_2:+73258975 | Msa0091120:CDS |
| CAGACCACAGTGATTTCAGC+AGG | 0.584643 | 1_2:-73259609 | None:intergenic |
| AGAAGAGAGGTGGTGGTGAG+CGG | 0.585119 | 1_2:-73258585 | None:intergenic |
| AACGATAATGAGGAATGTTG+TGG | 0.586263 | 1_2:+73259344 | Msa0091120:CDS |
| GGTTGGAGGAGATGCAGAAG+AGG | 0.586274 | 1_2:+73259559 | Msa0091120:CDS |
| ATATAGCAGCAAAATTGCAT+TGG | 0.592055 | 1_2:-73259829 | None:intergenic |
| TGCACACAATCCACTAACCA+TGG | 0.593701 | 1_2:-73258992 | None:intergenic |
| ACTGGCTGCTTTGTTGCCAA+AGG | 0.597676 | 1_2:+73259738 | Msa0091120:CDS |
| TTAAACAAACAGATGGTGGT+GGG | 0.600043 | 1_2:+73259055 | Msa0091120:CDS |
| GACTTGAATTCAAAAGCAGA+AGG | 0.600743 | 1_2:-73259093 | None:intergenic |
| AGAATAAGCGAAATCAAAGC+CGG | 0.605755 | 1_2:-73258908 | None:intergenic |
| AAGTGTGAAGAAGGTTGTTG+AGG | 0.610689 | 1_2:-73258933 | None:intergenic |
| GAATGTGTGTATGGAAGGAT+GGG | 0.610715 | 1_2:+73259404 | Msa0091120:CDS |
| GCGAATCACAATGGTACACA+TGG | 0.610730 | 1_2:+73258716 | Msa0091120:CDS |
| CAATGTGAGAGGAGAATCGC+CGG | 0.620006 | 1_2:+73259650 | Msa0091120:CDS |
| GAATTTAAACAAACAGATGG+TGG | 0.622742 | 1_2:+73259051 | Msa0091120:CDS |
| TTTCGTTAGAGTGCAACGAA+TGG | 0.625820 | 1_2:-73258426 | None:intergenic |
| GGAGCTGTTTGGGCCCACGG+TGG | 0.626272 | 1_2:+73258264 | Msa0091120:CDS |
| TGAAGATGAAAAGTCCACTC+AGG | 0.630228 | 1_2:+73259700 | Msa0091120:CDS |
| TGTTTGGAATAGCGGTGGAG+TGG | 0.630550 | 1_2:-73258374 | None:intergenic |
| AAAGAGTTAACTTACGGGGA+GGG | 0.633431 | 1_2:-73258612 | None:intergenic |
| ACCAGATTCTCAGCCTCACG+AGG | 0.633510 | 1_2:-73259024 | None:intergenic |
| GAAGTACCTGTTTGGAATAG+CGG | 0.633632 | 1_2:-73258382 | None:intergenic |
| TCCCAGCTTCAAGAAAGTCA+CGG | 0.637179 | 1_2:+73258323 | Msa0091120:CDS |
| GTACCTGTTTGGAATAGCGG+TGG | 0.638632 | 1_2:-73258379 | None:intergenic |
| TATGGAAGGATGGGAAGCTA+CGG | 0.639377 | 1_2:+73259413 | Msa0091120:CDS |
| GGAGGGCGAGAGAAGAGAGG+TGG | 0.639648 | 1_2:-73258595 | None:intergenic |
| GATGGTGTGGGATTCTAAAG+AGG | 0.643782 | 1_2:+73259479 | Msa0091120:CDS |
| GGTTAGTGGATTGTGTGCAA+TGG | 0.645853 | 1_2:+73258996 | Msa0091120:CDS |
| TGAAATCACTGTGGTCTGTG+GGG | 0.648087 | 1_2:+73259614 | Msa0091120:CDS |
| GGAAGGATGGGAAGCTACGG+TGG | 0.648287 | 1_2:+73259416 | Msa0091120:CDS |
| TAAGAATAAGCGAATCACAA+TGG | 0.660243 | 1_2:+73258707 | Msa0091120:CDS |
| TTCTTCCTATCAATCCTGAG+TGG | 0.663898 | 1_2:-73259714 | None:intergenic |
| GGAAAGCATAGCAATGTGAG+AGG | 0.667903 | 1_2:+73259639 | Msa0091120:CDS |
| AGGATTGATAGGAAGAACAC+TGG | 0.687654 | 1_2:+73259720 | Msa0091120:CDS |
| TGCAATGGATAAGCCTCGTG+AGG | 0.694549 | 1_2:+73259011 | Msa0091120:CDS |
| TAACCAAATAAGCTGAACCC+AGG | 0.706791 | 1_2:-73259527 | None:intergenic |
| GTTGCACTCTAACGAAACAA+GGG | 0.711347 | 1_2:+73258432 | Msa0091120:CDS |
| GATTCCTGCTGAAATCACTG+TGG | 0.811897 | 1_2:+73259605 | Msa0091120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATGATTCTTTCAAGTTT+TGG | + | chr1_2:73259216-73259235 | Msa0091120:CDS | 20.0% |
| !!! | TTATAAGTTCTAACAGAAAA+CGG | - | chr1_2:73259303-73259322 | None:intergenic | 20.0% |
| !! | TGATTTCATTGTATTATGAA+TGG | + | chr1_2:73259801-73259820 | Msa0091120:exon | 20.0% |
| !!! | AATATGATTCTTTCAAGTTT+TGG | + | chr1_2:73259216-73259235 | Msa0091120:CDS | 20.0% |
| !!! | TTATAAGTTCTAACAGAAAA+CGG | - | chr1_2:73259303-73259322 | None:intergenic | 20.0% |
| !! | TGATTTCATTGTATTATGAA+TGG | + | chr1_2:73259801-73259820 | Msa0091120:exon | 20.0% |
| ! | GAATTTACGAATGAGATATT+CGG | - | chr1_2:73258504-73258523 | None:intergenic | 25.0% |
| !! | GAATTCAAGTCTATTTTGTA+TGG | + | chr1_2:73259105-73259124 | Msa0091120:CDS | 25.0% |
| !! | AAGTCTATTTTGTATGGATA+TGG | + | chr1_2:73259111-73259130 | Msa0091120:CDS | 25.0% |
| ! | TTGATGAAATGGAGAATAAT+GGG | + | chr1_2:73259169-73259188 | Msa0091120:CDS | 25.0% |
| ! | AAATTTGGTTATGTGAATTG+AGG | + | chr1_2:73259772-73259791 | Msa0091120:CDS | 25.0% |
| ! | GAATTTACGAATGAGATATT+CGG | - | chr1_2:73258504-73258523 | None:intergenic | 25.0% |
| !! | GAATTCAAGTCTATTTTGTA+TGG | + | chr1_2:73259105-73259124 | Msa0091120:CDS | 25.0% |
| !! | AAGTCTATTTTGTATGGATA+TGG | + | chr1_2:73259111-73259130 | Msa0091120:CDS | 25.0% |
| ! | TTGATGAAATGGAGAATAAT+GGG | + | chr1_2:73259169-73259188 | Msa0091120:CDS | 25.0% |
| ! | AAATTTGGTTATGTGAATTG+AGG | + | chr1_2:73259772-73259791 | Msa0091120:CDS | 25.0% |
| AAATGAGATGAGGGTAATTT+GGG | - | chr1_2:73258642-73258661 | None:intergenic | 30.0% | |
| GAGATTATGAAATGAGATGA+GGG | - | chr1_2:73258651-73258670 | None:intergenic | 30.0% | |
| TAAGAATAAGCGAATCACAA+TGG | + | chr1_2:73258707-73258726 | Msa0091120:CDS | 30.0% | |
| GAATTTAAACAAACAGATGG+TGG | + | chr1_2:73259051-73259070 | Msa0091120:CDS | 30.0% | |
| TTTGTATGGATATGGAAGAT+TGG | + | chr1_2:73259119-73259138 | Msa0091120:CDS | 30.0% | |
| TTGTATGGATATGGAAGATT+GGG | + | chr1_2:73259120-73259139 | Msa0091120:CDS | 30.0% | |
| ! | GTTGATGAAATGGAGAATAA+TGG | + | chr1_2:73259168-73259187 | Msa0091120:CDS | 30.0% |
| TGTTGTGGATTTGAATGATT+TGG | + | chr1_2:73259359-73259378 | Msa0091120:CDS | 30.0% | |
| ! | CTTATTTGGTTATGTTGCTT+TGG | + | chr1_2:73259538-73259557 | Msa0091120:CDS | 30.0% |
| TCTTTAAGCAATACTTTGAC+CGG | - | chr1_2:73259672-73259691 | None:intergenic | 30.0% | |
| ATATAGCAGCAAAATTGCAT+TGG | - | chr1_2:73259832-73259851 | None:intergenic | 30.0% | |
| AAATGAGATGAGGGTAATTT+GGG | - | chr1_2:73258642-73258661 | None:intergenic | 30.0% | |
| GAGATTATGAAATGAGATGA+GGG | - | chr1_2:73258651-73258670 | None:intergenic | 30.0% | |
| TAAGAATAAGCGAATCACAA+TGG | + | chr1_2:73258707-73258726 | Msa0091120:CDS | 30.0% | |
| GAATTTAAACAAACAGATGG+TGG | + | chr1_2:73259051-73259070 | Msa0091120:CDS | 30.0% | |
| TTTGTATGGATATGGAAGAT+TGG | + | chr1_2:73259119-73259138 | Msa0091120:CDS | 30.0% | |
| TTGTATGGATATGGAAGATT+GGG | + | chr1_2:73259120-73259139 | Msa0091120:CDS | 30.0% | |
| ! | GTTGATGAAATGGAGAATAA+TGG | + | chr1_2:73259168-73259187 | Msa0091120:CDS | 30.0% |
| TGTTGTGGATTTGAATGATT+TGG | + | chr1_2:73259359-73259378 | Msa0091120:CDS | 30.0% | |
| ! | CTTATTTGGTTATGTTGCTT+TGG | + | chr1_2:73259538-73259557 | Msa0091120:CDS | 30.0% |
| TCTTTAAGCAATACTTTGAC+CGG | - | chr1_2:73259672-73259691 | None:intergenic | 30.0% | |
| ATATAGCAGCAAAATTGCAT+TGG | - | chr1_2:73259832-73259851 | None:intergenic | 30.0% | |
| ! | TTTAAGACGAAGTACCTGTT+TGG | - | chr1_2:73258393-73258412 | None:intergenic | 35.0% |
| !! | GAGATATTCGGTATTGGTAT+TGG | - | chr1_2:73258492-73258511 | None:intergenic | 35.0% |
| ACGAATGAGATATTCGGTAT+TGG | - | chr1_2:73258498-73258517 | None:intergenic | 35.0% | |
| GAGAAAAGAGTTAACTTACG+GGG | - | chr1_2:73258619-73258638 | None:intergenic | 35.0% | |
| GGAGAAAAGAGTTAACTTAC+GGG | - | chr1_2:73258620-73258639 | None:intergenic | 35.0% | |
| GGGAGAAAAGAGTTAACTTA+CGG | - | chr1_2:73258621-73258640 | None:intergenic | 35.0% | |
| AATGAGATGAGGGTAATTTG+GGG | - | chr1_2:73258641-73258660 | None:intergenic | 35.0% | |
| GAAATGAGATGAGGGTAATT+TGG | - | chr1_2:73258643-73258662 | None:intergenic | 35.0% | |
| GGAGATTATGAAATGAGATG+AGG | - | chr1_2:73258652-73258671 | None:intergenic | 35.0% | |
| !! | AAGAAATGGAAGGGTTAGTT+TGG | - | chr1_2:73258673-73258692 | None:intergenic | 35.0% |
| TGAAGTAGCTTCGGAAATTA+AGG | - | chr1_2:73258809-73258828 | None:intergenic | 35.0% | |
| !!! | GTTGAGTTTTGAAGTAGCTT+CGG | - | chr1_2:73258818-73258837 | None:intergenic | 35.0% |
| TCTCTTCTATGCAAAACTCT+TGG | + | chr1_2:73258858-73258877 | Msa0091120:CDS | 35.0% | |
| AGAATAAGCGAAATCAAAGC+CGG | - | chr1_2:73258911-73258930 | None:intergenic | 35.0% | |
| CGGGAATTTAAACAAACAGA+TGG | + | chr1_2:73259048-73259067 | Msa0091120:CDS | 35.0% | |
| ! | TTTAAACAAACAGATGGTGG+TGG | + | chr1_2:73259054-73259073 | Msa0091120:CDS | 35.0% |
| ! | TTAAACAAACAGATGGTGGT+GGG | + | chr1_2:73259055-73259074 | Msa0091120:CDS | 35.0% |
| GACTTGAATTCAAAAGCAGA+AGG | - | chr1_2:73259096-73259115 | None:intergenic | 35.0% | |
| ! | GAACAGAGTTGTTGATGAAA+TGG | + | chr1_2:73259158-73259177 | Msa0091120:CDS | 35.0% |
| !!! | TTCAAGTTTTGGAATTCACG+AGG | + | chr1_2:73259227-73259246 | Msa0091120:CDS | 35.0% |
| AGTATGTGGAAATGGTTTCT+TGG | + | chr1_2:73259250-73259269 | Msa0091120:CDS | 35.0% | |
| AAATGGTTTCTTGGCTTACA+AGG | + | chr1_2:73259259-73259278 | Msa0091120:CDS | 35.0% | |
| CAACATTCCTCATTATCGTT+GGG | - | chr1_2:73259344-73259363 | None:intergenic | 35.0% | |
| ACAACATTCCTCATTATCGT+TGG | - | chr1_2:73259345-73259364 | None:intergenic | 35.0% | |
| AACGATAATGAGGAATGTTG+TGG | + | chr1_2:73259344-73259363 | Msa0091120:CDS | 35.0% | |
| AGAGTTGTTGAATGTGTGTA+TGG | + | chr1_2:73259395-73259414 | Msa0091120:CDS | 35.0% | |
| TTGTTGAATGTGTGTATGGA+AGG | + | chr1_2:73259399-73259418 | Msa0091120:CDS | 35.0% | |
| ! | GTGTAATGTGATTTTCGATG+AGG | + | chr1_2:73259455-73259474 | Msa0091120:CDS | 35.0% |
| ! | GGATTCTAAAGAGGTGAAAT+TGG | + | chr1_2:73259488-73259507 | Msa0091120:CDS | 35.0% |
| !! | TTTGGTTATGTTGCTTTGGT+TGG | + | chr1_2:73259542-73259561 | Msa0091120:CDS | 35.0% |
| !! | AATTTTGACAGCCTTACCTT+TGG | - | chr1_2:73259757-73259776 | None:intergenic | 35.0% |
| AAGGTAAGGCTGTCAAAATT+TGG | + | chr1_2:73259757-73259776 | Msa0091120:CDS | 35.0% | |
| ! | TTTAAGACGAAGTACCTGTT+TGG | - | chr1_2:73258393-73258412 | None:intergenic | 35.0% |
| !! | GAGATATTCGGTATTGGTAT+TGG | - | chr1_2:73258492-73258511 | None:intergenic | 35.0% |
| ACGAATGAGATATTCGGTAT+TGG | - | chr1_2:73258498-73258517 | None:intergenic | 35.0% | |
| GAGAAAAGAGTTAACTTACG+GGG | - | chr1_2:73258619-73258638 | None:intergenic | 35.0% | |
| GGAGAAAAGAGTTAACTTAC+GGG | - | chr1_2:73258620-73258639 | None:intergenic | 35.0% | |
| GGGAGAAAAGAGTTAACTTA+CGG | - | chr1_2:73258621-73258640 | None:intergenic | 35.0% | |
| AATGAGATGAGGGTAATTTG+GGG | - | chr1_2:73258641-73258660 | None:intergenic | 35.0% | |
| GAAATGAGATGAGGGTAATT+TGG | - | chr1_2:73258643-73258662 | None:intergenic | 35.0% | |
| GGAGATTATGAAATGAGATG+AGG | - | chr1_2:73258652-73258671 | None:intergenic | 35.0% | |
| !! | AAGAAATGGAAGGGTTAGTT+TGG | - | chr1_2:73258673-73258692 | None:intergenic | 35.0% |
| TGAAGTAGCTTCGGAAATTA+AGG | - | chr1_2:73258809-73258828 | None:intergenic | 35.0% | |
| !!! | GTTGAGTTTTGAAGTAGCTT+CGG | - | chr1_2:73258818-73258837 | None:intergenic | 35.0% |
| TCTCTTCTATGCAAAACTCT+TGG | + | chr1_2:73258858-73258877 | Msa0091120:CDS | 35.0% | |
| AGAATAAGCGAAATCAAAGC+CGG | - | chr1_2:73258911-73258930 | None:intergenic | 35.0% | |
| CGGGAATTTAAACAAACAGA+TGG | + | chr1_2:73259048-73259067 | Msa0091120:CDS | 35.0% | |
| ! | TTTAAACAAACAGATGGTGG+TGG | + | chr1_2:73259054-73259073 | Msa0091120:CDS | 35.0% |
| ! | TTAAACAAACAGATGGTGGT+GGG | + | chr1_2:73259055-73259074 | Msa0091120:CDS | 35.0% |
| GACTTGAATTCAAAAGCAGA+AGG | - | chr1_2:73259096-73259115 | None:intergenic | 35.0% | |
| ! | GAACAGAGTTGTTGATGAAA+TGG | + | chr1_2:73259158-73259177 | Msa0091120:CDS | 35.0% |
| !!! | TTCAAGTTTTGGAATTCACG+AGG | + | chr1_2:73259227-73259246 | Msa0091120:CDS | 35.0% |
| AGTATGTGGAAATGGTTTCT+TGG | + | chr1_2:73259250-73259269 | Msa0091120:CDS | 35.0% | |
| AAATGGTTTCTTGGCTTACA+AGG | + | chr1_2:73259259-73259278 | Msa0091120:CDS | 35.0% | |
| CAACATTCCTCATTATCGTT+GGG | - | chr1_2:73259344-73259363 | None:intergenic | 35.0% | |
| ACAACATTCCTCATTATCGT+TGG | - | chr1_2:73259345-73259364 | None:intergenic | 35.0% | |
| AACGATAATGAGGAATGTTG+TGG | + | chr1_2:73259344-73259363 | Msa0091120:CDS | 35.0% | |
| AGAGTTGTTGAATGTGTGTA+TGG | + | chr1_2:73259395-73259414 | Msa0091120:CDS | 35.0% | |
| TTGTTGAATGTGTGTATGGA+AGG | + | chr1_2:73259399-73259418 | Msa0091120:CDS | 35.0% | |
| ! | GTGTAATGTGATTTTCGATG+AGG | + | chr1_2:73259455-73259474 | Msa0091120:CDS | 35.0% |
| ! | GGATTCTAAAGAGGTGAAAT+TGG | + | chr1_2:73259488-73259507 | Msa0091120:CDS | 35.0% |
| !! | TTTGGTTATGTTGCTTTGGT+TGG | + | chr1_2:73259542-73259561 | Msa0091120:CDS | 35.0% |
| !! | AATTTTGACAGCCTTACCTT+TGG | - | chr1_2:73259757-73259776 | None:intergenic | 35.0% |
| AAGGTAAGGCTGTCAAAATT+TGG | + | chr1_2:73259757-73259776 | Msa0091120:CDS | 35.0% | |
| TTTCTTGAAGCTGGGAATTG+TGG | - | chr1_2:73258319-73258338 | None:intergenic | 40.0% | |
| AGTCACGGCAAATTATGCAT+TGG | + | chr1_2:73258338-73258357 | Msa0091120:CDS | 40.0% | |
| GTCACGGCAAATTATGCATT+GGG | + | chr1_2:73258339-73258358 | Msa0091120:CDS | 40.0% | |
| ! | GAAGTACCTGTTTGGAATAG+CGG | - | chr1_2:73258385-73258404 | None:intergenic | 40.0% |
| TTTCGTTAGAGTGCAACGAA+TGG | - | chr1_2:73258429-73258448 | None:intergenic | 40.0% | |
| GTTGCACTCTAACGAAACAA+GGG | + | chr1_2:73258432-73258451 | Msa0091120:CDS | 40.0% | |
| !! | TTGTGGTTGAGAGTTTTGTG+AGG | - | chr1_2:73258466-73258485 | None:intergenic | 40.0% |
| !! | GGTATTGGTATTGGTGTTTG+TGG | - | chr1_2:73258483-73258502 | None:intergenic | 40.0% |
| AAAGAGTTAACTTACGGGGA+GGG | - | chr1_2:73258615-73258634 | None:intergenic | 40.0% | |
| AAAAGAGTTAACTTACGGGG+AGG | - | chr1_2:73258616-73258635 | None:intergenic | 40.0% | |
| AGCTGCAACAAGAAATGGAA+GGG | - | chr1_2:73258682-73258701 | None:intergenic | 40.0% | |
| TGTAGAGCTGCAACAAGAAA+TGG | - | chr1_2:73258687-73258706 | None:intergenic | 40.0% | |
| ! | TTAAATCGGCGATGATGGTT+GGG | - | chr1_2:73258744-73258763 | None:intergenic | 40.0% |
| ! | ATTAAATCGGCGATGATGGT+TGG | - | chr1_2:73258745-73258764 | None:intergenic | 40.0% |
| GTGGAGTAGGGTGATTAAAT+CGG | - | chr1_2:73258758-73258777 | None:intergenic | 40.0% | |
| ! | GGAAATTAAGGTCTGGGATT+CGG | - | chr1_2:73258797-73258816 | None:intergenic | 40.0% |
| AGCTTCGGAAATTAAGGTCT+GGG | - | chr1_2:73258803-73258822 | None:intergenic | 40.0% | |
| TAGCTTCGGAAATTAAGGTC+TGG | - | chr1_2:73258804-73258823 | None:intergenic | 40.0% | |
| AAGTGTGAAGAAGGTTGTTG+AGG | - | chr1_2:73258936-73258955 | None:intergenic | 40.0% | |
| ! | TTGAAGAGGAAGTGTGAAGA+AGG | - | chr1_2:73258945-73258964 | None:intergenic | 40.0% |
| GCGTTTGACGTAAATTGAAG+AGG | - | chr1_2:73258959-73258978 | None:intergenic | 40.0% | |
| GCTTATGAATCCATGGTTAG+TGG | + | chr1_2:73258982-73259001 | Msa0091120:CDS | 40.0% | |
| TTTCTTGGCTTACAAGGATG+AGG | + | chr1_2:73259265-73259284 | Msa0091120:CDS | 40.0% | |
| CTTACAAGGATGAGGAATTC+TGG | + | chr1_2:73259273-73259292 | Msa0091120:CDS | 40.0% | |
| CGTTGGGCAAGAATTTGAAA+CGG | - | chr1_2:73259328-73259347 | None:intergenic | 40.0% | |
| ATTCTTGCCCAACGATAATG+AGG | + | chr1_2:73259334-73259353 | Msa0091120:CDS | 40.0% | |
| TGAATGTGTGTATGGAAGGA+TGG | + | chr1_2:73259403-73259422 | Msa0091120:CDS | 40.0% | |
| GAATGTGTGTATGGAAGGAT+GGG | + | chr1_2:73259404-73259423 | Msa0091120:CDS | 40.0% | |
| ! | TGTGATTTTCGATGAGGTGA+TGG | + | chr1_2:73259461-73259480 | Msa0091120:CDS | 40.0% |
| GAGGTGAAATTGGATTTGCA+TGG | + | chr1_2:73259498-73259517 | Msa0091120:CDS | 40.0% | |
| GATTTGCATGGATTTCACCT+GGG | + | chr1_2:73259510-73259529 | Msa0091120:CDS | 40.0% | |
| TAACCAAATAAGCTGAACCC+AGG | - | chr1_2:73259530-73259549 | None:intergenic | 40.0% | |
| TGAAGATGAAAAGTCCACTC+AGG | + | chr1_2:73259700-73259719 | Msa0091120:CDS | 40.0% | |
| AAAGTCCACTCAGGATTGAT+AGG | + | chr1_2:73259709-73259728 | Msa0091120:CDS | 40.0% | |
| TTCTTCCTATCAATCCTGAG+TGG | - | chr1_2:73259717-73259736 | None:intergenic | 40.0% | |
| AGGATTGATAGGAAGAACAC+TGG | + | chr1_2:73259720-73259739 | Msa0091120:CDS | 40.0% | |
| TTTCTTGAAGCTGGGAATTG+TGG | - | chr1_2:73258319-73258338 | None:intergenic | 40.0% | |
| AGTCACGGCAAATTATGCAT+TGG | + | chr1_2:73258338-73258357 | Msa0091120:CDS | 40.0% | |
| GTCACGGCAAATTATGCATT+GGG | + | chr1_2:73258339-73258358 | Msa0091120:CDS | 40.0% | |
| ! | GAAGTACCTGTTTGGAATAG+CGG | - | chr1_2:73258385-73258404 | None:intergenic | 40.0% |
| TTTCGTTAGAGTGCAACGAA+TGG | - | chr1_2:73258429-73258448 | None:intergenic | 40.0% | |
| GTTGCACTCTAACGAAACAA+GGG | + | chr1_2:73258432-73258451 | Msa0091120:CDS | 40.0% | |
| !! | TTGTGGTTGAGAGTTTTGTG+AGG | - | chr1_2:73258466-73258485 | None:intergenic | 40.0% |
| !! | GGTATTGGTATTGGTGTTTG+TGG | - | chr1_2:73258483-73258502 | None:intergenic | 40.0% |
| AAAGAGTTAACTTACGGGGA+GGG | - | chr1_2:73258615-73258634 | None:intergenic | 40.0% | |
| AAAAGAGTTAACTTACGGGG+AGG | - | chr1_2:73258616-73258635 | None:intergenic | 40.0% | |
| AGCTGCAACAAGAAATGGAA+GGG | - | chr1_2:73258682-73258701 | None:intergenic | 40.0% | |
| TGTAGAGCTGCAACAAGAAA+TGG | - | chr1_2:73258687-73258706 | None:intergenic | 40.0% | |
| ! | TTAAATCGGCGATGATGGTT+GGG | - | chr1_2:73258744-73258763 | None:intergenic | 40.0% |
| ! | ATTAAATCGGCGATGATGGT+TGG | - | chr1_2:73258745-73258764 | None:intergenic | 40.0% |
| GTGGAGTAGGGTGATTAAAT+CGG | - | chr1_2:73258758-73258777 | None:intergenic | 40.0% | |
| ! | GGAAATTAAGGTCTGGGATT+CGG | - | chr1_2:73258797-73258816 | None:intergenic | 40.0% |
| AGCTTCGGAAATTAAGGTCT+GGG | - | chr1_2:73258803-73258822 | None:intergenic | 40.0% | |
| TAGCTTCGGAAATTAAGGTC+TGG | - | chr1_2:73258804-73258823 | None:intergenic | 40.0% | |
| AAGTGTGAAGAAGGTTGTTG+AGG | - | chr1_2:73258936-73258955 | None:intergenic | 40.0% | |
| ! | TTGAAGAGGAAGTGTGAAGA+AGG | - | chr1_2:73258945-73258964 | None:intergenic | 40.0% |
| GCGTTTGACGTAAATTGAAG+AGG | - | chr1_2:73258959-73258978 | None:intergenic | 40.0% | |
| GCTTATGAATCCATGGTTAG+TGG | + | chr1_2:73258982-73259001 | Msa0091120:CDS | 40.0% | |
| TTTCTTGGCTTACAAGGATG+AGG | + | chr1_2:73259265-73259284 | Msa0091120:CDS | 40.0% | |
| CTTACAAGGATGAGGAATTC+TGG | + | chr1_2:73259273-73259292 | Msa0091120:CDS | 40.0% | |
| CGTTGGGCAAGAATTTGAAA+CGG | - | chr1_2:73259328-73259347 | None:intergenic | 40.0% | |
| ATTCTTGCCCAACGATAATG+AGG | + | chr1_2:73259334-73259353 | Msa0091120:CDS | 40.0% | |
| TGAATGTGTGTATGGAAGGA+TGG | + | chr1_2:73259403-73259422 | Msa0091120:CDS | 40.0% | |
| GAATGTGTGTATGGAAGGAT+GGG | + | chr1_2:73259404-73259423 | Msa0091120:CDS | 40.0% | |
| ! | TGTGATTTTCGATGAGGTGA+TGG | + | chr1_2:73259461-73259480 | Msa0091120:CDS | 40.0% |
| GAGGTGAAATTGGATTTGCA+TGG | + | chr1_2:73259498-73259517 | Msa0091120:CDS | 40.0% | |
| GATTTGCATGGATTTCACCT+GGG | + | chr1_2:73259510-73259529 | Msa0091120:CDS | 40.0% | |
| TAACCAAATAAGCTGAACCC+AGG | - | chr1_2:73259530-73259549 | None:intergenic | 40.0% | |
| TGAAGATGAAAAGTCCACTC+AGG | + | chr1_2:73259700-73259719 | Msa0091120:CDS | 40.0% | |
| AAAGTCCACTCAGGATTGAT+AGG | + | chr1_2:73259709-73259728 | Msa0091120:CDS | 40.0% | |
| TTCTTCCTATCAATCCTGAG+TGG | - | chr1_2:73259717-73259736 | None:intergenic | 40.0% | |
| AGGATTGATAGGAAGAACAC+TGG | + | chr1_2:73259720-73259739 | Msa0091120:CDS | 40.0% | |
| AAGCTGGGAATTGTGGAGTT+GGG | - | chr1_2:73258312-73258331 | None:intergenic | 45.0% | |
| TCCCAGCTTCAAGAAAGTCA+CGG | + | chr1_2:73258323-73258342 | Msa0091120:CDS | 45.0% | |
| CGTTGCACTCTAACGAAACA+AGG | + | chr1_2:73258431-73258450 | Msa0091120:CDS | 45.0% | |
| GTGGAGAGTAGTACGGATTT+GGG | - | chr1_2:73258539-73258558 | None:intergenic | 45.0% | |
| AGTGGAGAGTAGTACGGATT+TGG | - | chr1_2:73258540-73258559 | None:intergenic | 45.0% | |
| AGTGAGAGTGGAGAGTAGTA+CGG | - | chr1_2:73258546-73258565 | None:intergenic | 45.0% | |
| GAGCTGCAACAAGAAATGGA+AGG | - | chr1_2:73258683-73258702 | None:intergenic | 45.0% | |
| GCGAATCACAATGGTACACA+TGG | + | chr1_2:73258716-73258735 | Msa0091120:CDS | 45.0% | |
| GGTGATTAAATCGGCGATGA+TGG | - | chr1_2:73258749-73258768 | None:intergenic | 45.0% | |
| GCGTTTGTGTTTGTGGAGTA+GGG | - | chr1_2:73258770-73258789 | None:intergenic | 45.0% | |
| AGCGTTTGTGTTTGTGGAGT+AGG | - | chr1_2:73258771-73258790 | None:intergenic | 45.0% | |
| ACGCAGAGCTTATGAATCCA+TGG | + | chr1_2:73258975-73258994 | Msa0091120:CDS | 45.0% | |
| TGCACACAATCCACTAACCA+TGG | - | chr1_2:73258995-73259014 | None:intergenic | 45.0% | |
| !! | GGTTAGTGGATTGTGTGCAA+TGG | + | chr1_2:73258996-73259015 | Msa0091120:CDS | 45.0% |
| ! | TGGAATTCACGAGGAGTATG+TGG | + | chr1_2:73259236-73259255 | Msa0091120:CDS | 45.0% |
| ! | TCACGAGGAGTATGTGGAAA+TGG | + | chr1_2:73259242-73259261 | Msa0091120:CDS | 45.0% |
| TATGGAAGGATGGGAAGCTA+CGG | + | chr1_2:73259413-73259432 | Msa0091120:CDS | 45.0% | |
| !! | TTTTCGATGAGGTGATGGTG+TGG | + | chr1_2:73259466-73259485 | Msa0091120:CDS | 45.0% |
| ! | TTTCGATGAGGTGATGGTGT+GGG | + | chr1_2:73259467-73259486 | Msa0091120:CDS | 45.0% |
| ! | GATGGTGTGGGATTCTAAAG+AGG | + | chr1_2:73259479-73259498 | Msa0091120:CDS | 45.0% |
| GGATTTGCATGGATTTCACC+TGG | + | chr1_2:73259509-73259528 | Msa0091120:CDS | 45.0% | |
| TCACCTGGGTTCAGCTTATT+TGG | + | chr1_2:73259524-73259543 | Msa0091120:CDS | 45.0% | |
| !! | GGTTATGTTGCTTTGGTTGG+AGG | + | chr1_2:73259545-73259564 | Msa0091120:CDS | 45.0% |
| GATTCCTGCTGAAATCACTG+TGG | + | chr1_2:73259605-73259624 | Msa0091120:CDS | 45.0% | |
| CTGAAATCACTGTGGTCTGT+GGG | + | chr1_2:73259613-73259632 | Msa0091120:CDS | 45.0% | |
| TGAAATCACTGTGGTCTGTG+GGG | + | chr1_2:73259614-73259633 | Msa0091120:CDS | 45.0% | |
| ! | GGAAAGCATAGCAATGTGAG+AGG | + | chr1_2:73259639-73259658 | Msa0091120:CDS | 45.0% |
| ! | CTGCTTTGTTGCCAAAGGTA+AGG | + | chr1_2:73259743-73259762 | Msa0091120:CDS | 45.0% |
| AAGCTGGGAATTGTGGAGTT+GGG | - | chr1_2:73258312-73258331 | None:intergenic | 45.0% | |
| TCCCAGCTTCAAGAAAGTCA+CGG | + | chr1_2:73258323-73258342 | Msa0091120:CDS | 45.0% | |
| CGTTGCACTCTAACGAAACA+AGG | + | chr1_2:73258431-73258450 | Msa0091120:CDS | 45.0% | |
| GTGGAGAGTAGTACGGATTT+GGG | - | chr1_2:73258539-73258558 | None:intergenic | 45.0% | |
| AGTGGAGAGTAGTACGGATT+TGG | - | chr1_2:73258540-73258559 | None:intergenic | 45.0% | |
| AGTGAGAGTGGAGAGTAGTA+CGG | - | chr1_2:73258546-73258565 | None:intergenic | 45.0% | |
| GAGCTGCAACAAGAAATGGA+AGG | - | chr1_2:73258683-73258702 | None:intergenic | 45.0% | |
| GCGAATCACAATGGTACACA+TGG | + | chr1_2:73258716-73258735 | Msa0091120:CDS | 45.0% | |
| GGTGATTAAATCGGCGATGA+TGG | - | chr1_2:73258749-73258768 | None:intergenic | 45.0% | |
| GCGTTTGTGTTTGTGGAGTA+GGG | - | chr1_2:73258770-73258789 | None:intergenic | 45.0% | |
| AGCGTTTGTGTTTGTGGAGT+AGG | - | chr1_2:73258771-73258790 | None:intergenic | 45.0% | |
| ACGCAGAGCTTATGAATCCA+TGG | + | chr1_2:73258975-73258994 | Msa0091120:CDS | 45.0% | |
| TGCACACAATCCACTAACCA+TGG | - | chr1_2:73258995-73259014 | None:intergenic | 45.0% | |
| !! | GGTTAGTGGATTGTGTGCAA+TGG | + | chr1_2:73258996-73259015 | Msa0091120:CDS | 45.0% |
| ! | TGGAATTCACGAGGAGTATG+TGG | + | chr1_2:73259236-73259255 | Msa0091120:CDS | 45.0% |
| ! | TCACGAGGAGTATGTGGAAA+TGG | + | chr1_2:73259242-73259261 | Msa0091120:CDS | 45.0% |
| TATGGAAGGATGGGAAGCTA+CGG | + | chr1_2:73259413-73259432 | Msa0091120:CDS | 45.0% | |
| !! | TTTTCGATGAGGTGATGGTG+TGG | + | chr1_2:73259466-73259485 | Msa0091120:CDS | 45.0% |
| ! | TTTCGATGAGGTGATGGTGT+GGG | + | chr1_2:73259467-73259486 | Msa0091120:CDS | 45.0% |
| ! | GATGGTGTGGGATTCTAAAG+AGG | + | chr1_2:73259479-73259498 | Msa0091120:CDS | 45.0% |
| GGATTTGCATGGATTTCACC+TGG | + | chr1_2:73259509-73259528 | Msa0091120:CDS | 45.0% | |
| TCACCTGGGTTCAGCTTATT+TGG | + | chr1_2:73259524-73259543 | Msa0091120:CDS | 45.0% | |
| !! | GGTTATGTTGCTTTGGTTGG+AGG | + | chr1_2:73259545-73259564 | Msa0091120:CDS | 45.0% |
| GATTCCTGCTGAAATCACTG+TGG | + | chr1_2:73259605-73259624 | Msa0091120:CDS | 45.0% | |
| CTGAAATCACTGTGGTCTGT+GGG | + | chr1_2:73259613-73259632 | Msa0091120:CDS | 45.0% | |
| TGAAATCACTGTGGTCTGTG+GGG | + | chr1_2:73259614-73259633 | Msa0091120:CDS | 45.0% | |
| ! | GGAAAGCATAGCAATGTGAG+AGG | + | chr1_2:73259639-73259658 | Msa0091120:CDS | 45.0% |
| ! | CTGCTTTGTTGCCAAAGGTA+AGG | + | chr1_2:73259743-73259762 | Msa0091120:CDS | 45.0% |
| CTCAACTCCAAACCCAGCTT+CGG | + | chr1_2:73258243-73258262 | Msa0091120:CDS | 50.0% | |
| TTGTGGAGTTGGGGAAAACG+TGG | - | chr1_2:73258302-73258321 | None:intergenic | 50.0% | |
| AGCTGGGAATTGTGGAGTTG+GGG | - | chr1_2:73258311-73258330 | None:intergenic | 50.0% | |
| GAAGCTGGGAATTGTGGAGT+TGG | - | chr1_2:73258313-73258332 | None:intergenic | 50.0% | |
| GCCGTGACTTTCTTGAAGCT+GGG | - | chr1_2:73258327-73258346 | None:intergenic | 50.0% | |
| TGCCGTGACTTTCTTGAAGC+TGG | - | chr1_2:73258328-73258347 | None:intergenic | 50.0% | |
| ! | TGTTTGGAATAGCGGTGGAG+TGG | - | chr1_2:73258377-73258396 | None:intergenic | 50.0% |
| ACTCCACCGCTATTCCAAAC+AGG | + | chr1_2:73258376-73258395 | Msa0091120:CDS | 50.0% | |
| ! | GTACCTGTTTGGAATAGCGG+TGG | - | chr1_2:73258382-73258401 | None:intergenic | 50.0% |
| GAGTAGTACGGATTTGGGTG+AGG | - | chr1_2:73258534-73258553 | None:intergenic | 50.0% | |
| CGGTGTAGCGTTTGTGTTTG+TGG | - | chr1_2:73258777-73258796 | None:intergenic | 50.0% | |
| TCCAAACGCGCTTCTCAAAC+CGG | + | chr1_2:73258889-73258908 | Msa0091120:CDS | 50.0% | |
| TGCAATGGATAAGCCTCGTG+AGG | + | chr1_2:73259011-73259030 | Msa0091120:CDS | 50.0% | |
| GTGAGGCTGAGAATCTGGTT+CGG | + | chr1_2:73259028-73259047 | Msa0091120:CDS | 50.0% | |
| ! | TGAGGCTGAGAATCTGGTTC+GGG | + | chr1_2:73259029-73259048 | Msa0091120:CDS | 50.0% |
| ATGGGAAGCTACGGTGGTTA+AGG | + | chr1_2:73259422-73259441 | Msa0091120:CDS | 50.0% | |
| CAGACCACAGTGATTTCAGC+AGG | - | chr1_2:73259612-73259631 | None:intergenic | 50.0% | |
| GCTGAAATCACTGTGGTCTG+TGG | + | chr1_2:73259612-73259631 | Msa0091120:CDS | 50.0% | |
| CAATGTGAGAGGAGAATCGC+CGG | + | chr1_2:73259650-73259669 | Msa0091120:CDS | 50.0% | |
| ! | ACTGGCTGCTTTGTTGCCAA+AGG | + | chr1_2:73259738-73259757 | Msa0091120:CDS | 50.0% |
| CTCAACTCCAAACCCAGCTT+CGG | + | chr1_2:73258243-73258262 | Msa0091120:CDS | 50.0% | |
| TTGTGGAGTTGGGGAAAACG+TGG | - | chr1_2:73258302-73258321 | None:intergenic | 50.0% | |
| AGCTGGGAATTGTGGAGTTG+GGG | - | chr1_2:73258311-73258330 | None:intergenic | 50.0% | |
| GAAGCTGGGAATTGTGGAGT+TGG | - | chr1_2:73258313-73258332 | None:intergenic | 50.0% | |
| GCCGTGACTTTCTTGAAGCT+GGG | - | chr1_2:73258327-73258346 | None:intergenic | 50.0% | |
| TGCCGTGACTTTCTTGAAGC+TGG | - | chr1_2:73258328-73258347 | None:intergenic | 50.0% | |
| ! | TGTTTGGAATAGCGGTGGAG+TGG | - | chr1_2:73258377-73258396 | None:intergenic | 50.0% |
| ACTCCACCGCTATTCCAAAC+AGG | + | chr1_2:73258376-73258395 | Msa0091120:CDS | 50.0% | |
| ! | GTACCTGTTTGGAATAGCGG+TGG | - | chr1_2:73258382-73258401 | None:intergenic | 50.0% |
| GAGTAGTACGGATTTGGGTG+AGG | - | chr1_2:73258534-73258553 | None:intergenic | 50.0% | |
| CGGTGTAGCGTTTGTGTTTG+TGG | - | chr1_2:73258777-73258796 | None:intergenic | 50.0% | |
| TCCAAACGCGCTTCTCAAAC+CGG | + | chr1_2:73258889-73258908 | Msa0091120:CDS | 50.0% | |
| TGCAATGGATAAGCCTCGTG+AGG | + | chr1_2:73259011-73259030 | Msa0091120:CDS | 50.0% | |
| GTGAGGCTGAGAATCTGGTT+CGG | + | chr1_2:73259028-73259047 | Msa0091120:CDS | 50.0% | |
| ! | TGAGGCTGAGAATCTGGTTC+GGG | + | chr1_2:73259029-73259048 | Msa0091120:CDS | 50.0% |
| ATGGGAAGCTACGGTGGTTA+AGG | + | chr1_2:73259422-73259441 | Msa0091120:CDS | 50.0% | |
| CAGACCACAGTGATTTCAGC+AGG | - | chr1_2:73259612-73259631 | None:intergenic | 50.0% | |
| GCTGAAATCACTGTGGTCTG+TGG | + | chr1_2:73259612-73259631 | Msa0091120:CDS | 50.0% | |
| CAATGTGAGAGGAGAATCGC+CGG | + | chr1_2:73259650-73259669 | Msa0091120:CDS | 50.0% | |
| ! | ACTGGCTGCTTTGTTGCCAA+AGG | + | chr1_2:73259738-73259757 | Msa0091120:CDS | 50.0% |
| ! | TGGGTTTGGAGTTGAGGAGG+AGG | - | chr1_2:73258239-73258258 | None:intergenic | 55.0% |
| ! | AGCTGGGTTTGGAGTTGAGG+AGG | - | chr1_2:73258242-73258261 | None:intergenic | 55.0% |
| ! | CGAAGCTGGGTTTGGAGTTG+AGG | - | chr1_2:73258245-73258264 | None:intergenic | 55.0% |
| AACAGCTCCGAAGCTGGGTT+TGG | - | chr1_2:73258253-73258272 | None:intergenic | 55.0% | |
| AACCCAGCTTCGGAGCTGTT+TGG | + | chr1_2:73258253-73258272 | Msa0091120:CDS | 55.0% | |
| ACCCAGCTTCGGAGCTGTTT+GGG | + | chr1_2:73258254-73258273 | Msa0091120:CDS | 55.0% | |
| ! | GTTTTGCTCTCTCCCACCGT+GGG | - | chr1_2:73258280-73258299 | None:intergenic | 55.0% |
| AGAGAGGAGGTGAGTGAGAG+TGG | - | chr1_2:73258558-73258577 | None:intergenic | 55.0% | |
| ! | AGAAGAGAGGTGGTGGTGAG+CGG | - | chr1_2:73258588-73258607 | None:intergenic | 55.0% |
| ACCAGATTCTCAGCCTCACG+AGG | - | chr1_2:73259027-73259046 | None:intergenic | 55.0% | |
| GGTTGGAGGAGATGCAGAAG+AGG | + | chr1_2:73259559-73259578 | Msa0091120:CDS | 55.0% | |
| ATCACTGTGGTCTGTGGGGT+TGG | + | chr1_2:73259618-73259637 | Msa0091120:CDS | 55.0% | |
| ! | TGGGTTTGGAGTTGAGGAGG+AGG | - | chr1_2:73258239-73258258 | None:intergenic | 55.0% |
| ! | AGCTGGGTTTGGAGTTGAGG+AGG | - | chr1_2:73258242-73258261 | None:intergenic | 55.0% |
| ! | CGAAGCTGGGTTTGGAGTTG+AGG | - | chr1_2:73258245-73258264 | None:intergenic | 55.0% |
| AACAGCTCCGAAGCTGGGTT+TGG | - | chr1_2:73258253-73258272 | None:intergenic | 55.0% | |
| AACCCAGCTTCGGAGCTGTT+TGG | + | chr1_2:73258253-73258272 | Msa0091120:CDS | 55.0% | |
| ACCCAGCTTCGGAGCTGTTT+GGG | + | chr1_2:73258254-73258273 | Msa0091120:CDS | 55.0% | |
| ! | GTTTTGCTCTCTCCCACCGT+GGG | - | chr1_2:73258280-73258299 | None:intergenic | 55.0% |
| AGAGAGGAGGTGAGTGAGAG+TGG | - | chr1_2:73258558-73258577 | None:intergenic | 55.0% | |
| ! | AGAAGAGAGGTGGTGGTGAG+CGG | - | chr1_2:73258588-73258607 | None:intergenic | 55.0% |
| ACCAGATTCTCAGCCTCACG+AGG | - | chr1_2:73259027-73259046 | None:intergenic | 55.0% | |
| GGTTGGAGGAGATGCAGAAG+AGG | + | chr1_2:73259559-73259578 | Msa0091120:CDS | 55.0% | |
| ATCACTGTGGTCTGTGGGGT+TGG | + | chr1_2:73259618-73259637 | Msa0091120:CDS | 55.0% | |
| GCCCAAACAGCTCCGAAGCT+GGG | - | chr1_2:73258258-73258277 | None:intergenic | 60.0% | |
| TTCGGAGCTGTTTGGGCCCA+CGG | + | chr1_2:73258261-73258280 | Msa0091120:CDS | 60.0% | |
| ! | GGTTTTGCTCTCTCCCACCG+TGG | - | chr1_2:73258281-73258300 | None:intergenic | 60.0% |
| !! | GCCGGTTTGAGAAGCGCGTT+TGG | - | chr1_2:73258893-73258912 | None:intergenic | 60.0% |
| GCCTCGTGAGGCTGAGAATC+TGG | + | chr1_2:73259023-73259042 | Msa0091120:CDS | 60.0% | |
| GGAAGGATGGGAAGCTACGG+TGG | + | chr1_2:73259416-73259435 | Msa0091120:CDS | 60.0% | |
| GCCCAAACAGCTCCGAAGCT+GGG | - | chr1_2:73258258-73258277 | None:intergenic | 60.0% | |
| TTCGGAGCTGTTTGGGCCCA+CGG | + | chr1_2:73258261-73258280 | Msa0091120:CDS | 60.0% | |
| ! | GGTTTTGCTCTCTCCCACCG+TGG | - | chr1_2:73258281-73258300 | None:intergenic | 60.0% |
| !! | GCCGGTTTGAGAAGCGCGTT+TGG | - | chr1_2:73258893-73258912 | None:intergenic | 60.0% |
| GCCTCGTGAGGCTGAGAATC+TGG | + | chr1_2:73259023-73259042 | Msa0091120:CDS | 60.0% | |
| GGAAGGATGGGAAGCTACGG+TGG | + | chr1_2:73259416-73259435 | Msa0091120:CDS | 60.0% | |
| GGCCCAAACAGCTCCGAAGC+TGG | - | chr1_2:73258259-73258278 | None:intergenic | 65.0% | |
| GAGCTGTTTGGGCCCACGGT+GGG | + | chr1_2:73258265-73258284 | Msa0091120:CDS | 65.0% | |
| ! | AGGTGGTGGTGAGCGGTGGT+GGG | - | chr1_2:73258581-73258600 | None:intergenic | 65.0% |
| ! | AGAGAGGTGGTGGTGAGCGG+TGG | - | chr1_2:73258585-73258604 | None:intergenic | 65.0% |
| GGGCGAGAGAAGAGAGGTGG+TGG | - | chr1_2:73258595-73258614 | None:intergenic | 65.0% | |
| GGAGGGCGAGAGAAGAGAGG+TGG | - | chr1_2:73258598-73258617 | None:intergenic | 65.0% | |
| GGCCCAAACAGCTCCGAAGC+TGG | - | chr1_2:73258259-73258278 | None:intergenic | 65.0% | |
| GAGCTGTTTGGGCCCACGGT+GGG | + | chr1_2:73258265-73258284 | Msa0091120:CDS | 65.0% | |
| ! | AGGTGGTGGTGAGCGGTGGT+GGG | - | chr1_2:73258581-73258600 | None:intergenic | 65.0% |
| ! | AGAGAGGTGGTGGTGAGCGG+TGG | - | chr1_2:73258585-73258604 | None:intergenic | 65.0% |
| GGGCGAGAGAAGAGAGGTGG+TGG | - | chr1_2:73258595-73258614 | None:intergenic | 65.0% | |
| GGAGGGCGAGAGAAGAGAGG+TGG | - | chr1_2:73258598-73258617 | None:intergenic | 65.0% | |
| GGAGCTGTTTGGGCCCACGG+TGG | + | chr1_2:73258264-73258283 | Msa0091120:CDS | 70.0% | |
| !! | GAGCGGTGGTGGGAGAGAGG+AGG | - | chr1_2:73258571-73258590 | None:intergenic | 70.0% |
| !! | GGTGAGCGGTGGTGGGAGAG+AGG | - | chr1_2:73258574-73258593 | None:intergenic | 70.0% |
| ! | GAGGTGGTGGTGAGCGGTGG+TGG | - | chr1_2:73258582-73258601 | None:intergenic | 70.0% |
| CGGGGAGGGCGAGAGAAGAG+AGG | - | chr1_2:73258601-73258620 | None:intergenic | 70.0% | |
| GGAGCTGTTTGGGCCCACGG+TGG | + | chr1_2:73258264-73258283 | Msa0091120:CDS | 70.0% | |
| !! | GAGCGGTGGTGGGAGAGAGG+AGG | - | chr1_2:73258571-73258590 | None:intergenic | 70.0% |
| !! | GGTGAGCGGTGGTGGGAGAG+AGG | - | chr1_2:73258574-73258593 | None:intergenic | 70.0% |
| ! | GAGGTGGTGGTGAGCGGTGG+TGG | - | chr1_2:73258582-73258601 | None:intergenic | 70.0% |
| CGGGGAGGGCGAGAGAAGAG+AGG | - | chr1_2:73258601-73258620 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 73258194 | 73259855 | 73258194 | ID=Msa0091120;Name=Msa0091120 |
| chr1_2 | mRNA | 73258194 | 73259855 | 73258194 | ID=Msa0091120-mRNA-1;Parent=Msa0091120;Name=Msa0091120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|1|1|1|1|2|52|509 |
| chr1_2 | exon | 73258194 | 73258619 | 73258194 | ID=Msa0091120-mRNA-1:exon:25541;Parent=Msa0091120-mRNA-1 |
| chr1_2 | exon | 73258700 | 73259855 | 73258700 | ID=Msa0091120-mRNA-1:exon:25542;Parent=Msa0091120-mRNA-1 |
| chr1_2 | CDS | 73258194 | 73258619 | 73258194 | ID=Msa0091120-mRNA-1:cds;Parent=Msa0091120-mRNA-1 |
| chr1_2 | CDS | 73258700 | 73259803 | 73258700 | ID=Msa0091120-mRNA-1:cds;Parent=Msa0091120-mRNA-1 |
| chr1_2 | three_prime_UTR | 73259804 | 73259855 | 73259804 | ID=Msa0091120-mRNA-1:three_prime_utr;Parent=Msa0091120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
