AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047400 MtrunA17_Chr6g0450891 99.130 230 2 0 1 230 54 283 2.56e-168 474
Msa0047400 MtrunA17_Chr6g0450881 99.095 221 2 0 235 455 1 221 1.93e-160 452
Msa0047400 MtrunA17_Chr8g0359811 27.373 453 248 17 45 449 2 421 3.48e-32 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047400 AT3G01480.1 75.112 446 100 5 11 455 2 437 0.0 682
Msa0047400 AT3G01480.2 70.893 347 90 5 11 356 2 338 1.49e-176 498
Msa0047400 AT3G15520.3 29.083 447 262 18 33 449 35 456 3.14e-34 134
Msa0047400 AT3G15520.1 29.083 447 262 18 33 449 35 456 3.14e-34 134
Msa0047400 AT3G15520.2 29.042 334 199 9 136 449 1 316 1.62e-31 123
Msa0047400 AT3G15520.4 28.571 343 202 14 33 351 35 358 8.56e-22 97.1

Find 140 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGATAGTCTCAAGATTTC+TGG 0.168643 1_1:+80192607 Msa0047400:CDS
GAATCCATTCAAGTTGTTTC+TGG 0.214909 1_1:+80195200 Msa0047400:CDS
AAGACTCTTAGAGTGATTAT+TGG 0.226418 1_1:-80191396 None:intergenic
CTGGCTCTAGCCAAGTATTT+TGG 0.227149 1_1:+80195054 Msa0047400:CDS
TGTTTCTGGTTTGGATAATT+TGG 0.233188 1_1:+80195214 Msa0047400:CDS
AACAGAAAATGAAGATTTCT+TGG 0.254187 1_1:+80195151 Msa0047400:CDS
GACTATACCTTTAGAAATTA+TGG 0.255407 1_1:+80194554 Msa0047400:CDS
ACGAAATTGCCGGCAGTTAC+AGG 0.259328 1_1:-80193888 None:intergenic
ATTATTGGAGTGAAACAAAA+TGG 0.265742 1_1:-80191381 None:intergenic
AAACCCTCGGCAGGACCTTC+AGG 0.267172 1_1:-80194504 None:intergenic
AAGCTTCCGTTTAATGCATT+TGG 0.279608 1_1:+80194880 Msa0047400:CDS
GGTAAGACATTAATTATATC+AGG 0.285722 1_1:+80192952 Msa0047400:CDS
AATGCCCCAGGGTCCTTAAT+TGG 0.285824 1_1:-80192517 None:intergenic
GATATCTGGACCGCCAATTA+AGG 0.287928 1_1:+80192504 Msa0047400:CDS
AACACACATTCCTCTAAGTT+TGG 0.307872 1_1:-80193837 None:intergenic
CTCTTTCTCTCTACCTTCAA+TGG 0.317604 1_1:+80191310 Msa0047400:exon
CATTCAAGTTGTTTCTGGTT+TGG 0.322297 1_1:+80195205 Msa0047400:CDS
GTTCAACCTTCAATGGTTAC+TGG 0.323361 1_1:+80195323 Msa0047400:three_prime_UTR
TGAAGAAGTTCCTTCTGTTT+TGG 0.325346 1_1:-80193084 None:intergenic
GATCTGTCTGTATTGATATC+TGG 0.326137 1_1:+80192490 Msa0047400:CDS
TCTAGAGTTTCGCCATAAAA+AGG 0.332882 1_1:-80194594 None:intergenic
CTTTCAATAAAGGCAAATTT+CGG 0.340786 1_1:-80193773 None:intergenic
TCCAAGCAATGCCAACATAT+TGG 0.345818 1_1:+80195100 Msa0047400:CDS
TGGTCTTCCTATTGACAATA+AGG 0.348536 1_1:+80192549 Msa0047400:CDS
CTTTCAATAGCCAAAATACT+TGG 0.354242 1_1:-80195064 None:intergenic
ACAGACAGATCAGGTAAAAC+AGG 0.356384 1_1:-80192478 None:intergenic
AGATTTCTTGGCAGACCTTA+AGG 0.363446 1_1:+80195163 Msa0047400:CDS
TCCAATATGTTGGCATTGCT+TGG 0.366720 1_1:-80195101 None:intergenic
AATGATGGGTTGGTGGAGTT+TGG 0.372692 1_1:-80191484 None:intergenic
GACCTTCAGGGTCACCGGTT+TGG 0.377802 1_1:-80194491 None:intergenic
GCTGCTCTCCCTTTCAATAA+AGG 0.380271 1_1:-80193783 None:intergenic
CCTGGGGCATTGTTGAGATA+TGG 0.383495 1_1:+80192529 Msa0047400:CDS
AGCTACAAGATTGCTGGTTA+AGG 0.387705 1_1:+80195245 Msa0047400:CDS
TATTCCTCAGGCACTTCATA+TGG 0.401247 1_1:-80193750 None:intergenic
ATAGATAGATAGATAAGGTT+TGG 0.403559 1_1:-80191261 None:intergenic
GTGTTCCACATAGTTCTTGA+TGG 0.404241 1_1:+80193855 Msa0047400:CDS
CTTGCGGTCGGGTTAATAAC+AGG 0.406077 1_1:+80192412 Msa0047400:CDS
GTCTTGTTTGGACAGGAGCT+TGG 0.412150 1_1:+80194838 Msa0047400:intron
TAATGTCTTACCTTGCTTGA+GGG 0.412765 1_1:-80192941 None:intergenic
CGAAATTTGCCTTTATTGAA+AGG 0.414245 1_1:+80193774 Msa0047400:CDS
ATTGTTCCAAATGCATTAAA+CGG 0.417987 1_1:-80194886 None:intergenic
ACTTCTCCAGTAACCATTGA+AGG 0.419964 1_1:-80195329 None:intergenic
TACCAAGTCAACGAAATTGC+CGG 0.421378 1_1:-80193898 None:intergenic
CTATGACATCACCAACCTTA+AGG 0.424481 1_1:-80195178 None:intergenic
CTTAACTGAATGCTAGATTC+TGG 0.425387 1_1:-80195364 None:intergenic
CTAATCGCCTTATTGTCAAT+AGG 0.425706 1_1:-80192556 None:intergenic
CCCTCTACCATAATTTCTAA+AGG 0.426856 1_1:-80194561 None:intergenic
AGAGAAAGAGACAGTGGAAG+GGG 0.429284 1_1:-80191297 None:intergenic
GTTGAAGAAGACATGGTTGA+TGG 0.437254 1_1:+80193723 Msa0047400:CDS
AACCCCAGCTACAAGATTGC+TGG 0.439725 1_1:+80195239 Msa0047400:CDS
TTATTGGAGTGAAACAAAAT+GGG 0.440181 1_1:-80191380 None:intergenic
TTGAACTGATACTACAAGAT+AGG 0.441548 1_1:+80193043 Msa0047400:CDS
TAAAGACAATCCAAACTTAG+AGG 0.442062 1_1:+80193827 Msa0047400:CDS
AATTGAACTGCTTGATAAGC+TGG 0.446258 1_1:+80193002 Msa0047400:CDS
ATAACAGGAGTTCCTACGTT+GGG 0.448584 1_1:+80192427 Msa0047400:CDS
GAAATTTGCCTTTATTGAAA+GGG 0.449247 1_1:+80193775 Msa0047400:CDS
TATCTTTAGCACTTGCGGTC+GGG 0.451823 1_1:+80192401 Msa0047400:CDS
CAAACCAGAAACAACTTGAA+TGG 0.457875 1_1:-80195204 None:intergenic
TTAACCAGCAATCTTGTAGC+TGG 0.458375 1_1:-80195243 None:intergenic
ACGTGTAGTTCAACCTTCAA+TGG 0.461335 1_1:+80195316 Msa0047400:three_prime_UTR
TATGATCAAATTGAGAATGA+TGG 0.461499 1_1:-80191499 None:intergenic
AAGGAACTTCTTCAATATGT+TGG 0.462165 1_1:+80193093 Msa0047400:CDS
GGCAAATTTCGGTATTCCTC+AGG 0.467429 1_1:-80193762 None:intergenic
TATGTTTGAGTAGGAATTTG+AGG 0.468536 1_1:+80195025 Msa0047400:intron
ATATCTTTAGCACTTGCGGT+CGG 0.471409 1_1:+80192400 Msa0047400:CDS
GGCAGGACCTTCAGGGTCAC+CGG 0.474696 1_1:-80194496 None:intergenic
GACCGCCAATTAAGGACCCT+GGG 0.483051 1_1:+80192512 Msa0047400:CDS
GAGAGCAGCTGTAGATATGA+AGG 0.486022 1_1:+80193797 Msa0047400:CDS
ACCTTTAGAAATTATGGTAG+AGG 0.487023 1_1:+80194560 Msa0047400:CDS
CGAAATTGCCGGCAGTTACA+GGG 0.488614 1_1:-80193887 None:intergenic
AATCTAGCATTCAGTTAAGC+AGG 0.489975 1_1:+80195368 Msa0047400:three_prime_UTR
AGATCGGATCTATACCTCTC+TGG 0.494419 1_1:-80193950 None:intergenic
AACCCTCGGCAGGACCTTCA+GGG 0.495495 1_1:-80194503 None:intergenic
AATTATGGTAGAGGGAGAAA+AGG 0.496573 1_1:+80194569 Msa0047400:CDS
GACGGGTTTGTTGTCCAAAC+CGG 0.496648 1_1:+80194477 Msa0047400:CDS
TAACCAGCAATCTTGTAGCT+GGG 0.498970 1_1:-80195242 None:intergenic
TGCCGGCAATTTCGTTGACT+TGG 0.499568 1_1:+80193896 Msa0047400:CDS
AGAACATAGATAGATAGATA+AGG 0.507630 1_1:-80191266 None:intergenic
GAACTTCTTCAATATGTTGG+AGG 0.513243 1_1:+80193096 Msa0047400:CDS
AGAGAGAAAGAGACAGTGGA+AGG 0.514309 1_1:-80191299 None:intergenic
AGGTAGAGAGAAAGAGACAG+TGG 0.516982 1_1:-80191303 None:intergenic
GAGAGAAAGAGACAGTGGAA+GGG 0.517856 1_1:-80191298 None:intergenic
ATGATCAAATTGAGAATGAT+GGG 0.518395 1_1:-80191498 None:intergenic
GATATCAATACAGACAGATC+AGG 0.523570 1_1:-80192487 None:intergenic
TTCTTGGCAGACCTTAAGGT+TGG 0.524531 1_1:+80195167 Msa0047400:CDS
TTAATGTCTTACCTTGCTTG+AGG 0.526720 1_1:-80192942 None:intergenic
TCTACTAAATCCTCCAACAT+TGG 0.531126 1_1:-80191438 None:intergenic
GACCCTGAAGGTCCTGCCGA+GGG 0.531280 1_1:+80194501 Msa0047400:CDS
CCATATCTCAACAATGCCCC+AGG 0.533159 1_1:-80192529 None:intergenic
TGACCCTGAAGGTCCTGCCG+AGG 0.533538 1_1:+80194500 Msa0047400:CDS
GTGAGGAAATTGTTGTATGT+AGG 0.536542 1_1:+80195465 Msa0047400:three_prime_UTR
TGCGATATCTTTAGCACTTG+CGG 0.541234 1_1:+80192396 Msa0047400:CDS
GTTTAATGCATTTGGAACAA+TGG 0.545136 1_1:+80194888 Msa0047400:CDS
ACAATAGTGACGAGGAATGA+TGG 0.547534 1_1:-80191339 None:intergenic
CTGCAGTGTTGAAGAAGACA+TGG 0.547863 1_1:+80193716 Msa0047400:intron
ATGTAACAAACAACATTGGT+GGG 0.549748 1_1:-80191193 None:intergenic
CCTTTAGAAATTATGGTAGA+GGG 0.553718 1_1:+80194561 Msa0047400:CDS
AACTTCTTCAATATGTTGGA+GGG 0.560615 1_1:+80193097 Msa0047400:CDS
CGTGCGCAATATTTAATAGC+CGG 0.561542 1_1:-80195281 None:intergenic
GGACCGCCAATTAAGGACCC+TGG 0.563001 1_1:+80192511 Msa0047400:CDS
ATATCTACCATCCAATATGT+TGG 0.565448 1_1:-80195111 None:intergenic
AACCAGCAATCTTGTAGCTG+GGG 0.567223 1_1:-80195241 None:intergenic
TGGGTTGTAGAATGTGAGAC+AGG 0.567671 1_1:+80192909 Msa0047400:intron
TAGGAATTTGAGGACAACTC+TGG 0.570773 1_1:+80195035 Msa0047400:intron
GCCCCAGGGTCCTTAATTGG+CGG 0.573398 1_1:-80192514 None:intergenic
TCTCAAGATTTCTGGAGTCA+AGG 0.574299 1_1:+80192615 Msa0047400:CDS
TGCATTTGGAACAATGGCGA+TGG 0.578659 1_1:+80194894 Msa0047400:CDS
GATGTAACAAACAACATTGG+TGG 0.582228 1_1:-80191194 None:intergenic
CTGCTTGATAAGCTGGAAGC+TGG 0.592541 1_1:+80193009 Msa0047400:CDS
TATAATGCCCCTGTAACTGC+CGG 0.593137 1_1:+80193879 Msa0047400:CDS
TATTGGAGTGAAACAAAATG+GGG 0.593667 1_1:-80191379 None:intergenic
AATTGAGAATGATGGGTTGG+TGG 0.595058 1_1:-80191491 None:intergenic
GGATCAATAAAACCCTCGGC+AGG 0.596143 1_1:-80194513 None:intergenic
TAACAGGAGTTCCTACGTTG+GGG 0.601545 1_1:+80192428 Msa0047400:CDS
TGCCGTGGCACCAAAACAGA+AGG 0.603159 1_1:+80193074 Msa0047400:CDS
ATGATGGATGATGCCATTGA+AGG 0.605330 1_1:-80191323 None:intergenic
AGCAATGCCAACATATTGGA+TGG 0.605476 1_1:+80195104 Msa0047400:CDS
TTAGCTGCATGTGCATCGTT+AGG 0.611517 1_1:-80192454 None:intergenic
GTCCAAACCGGTGACCCTGA+AGG 0.613081 1_1:+80194489 Msa0047400:CDS
TCAAATTGAGAATGATGGGT+TGG 0.617762 1_1:-80191494 None:intergenic
GAGGATGTAACAAACAACAT+TGG 0.618775 1_1:-80191197 None:intergenic
CTATCAGTAATATCTTCAAG+TGG 0.619643 1_1:-80192592 None:intergenic
GCTGAATCAAAGAAAGAACA+TGG 0.621255 1_1:+80192979 Msa0047400:CDS
ACAGGAGCTTGGTCTATACA+AGG 0.622115 1_1:+80194849 Msa0047400:intron
TATAACCATCAAGAACTATG+TGG 0.626770 1_1:-80193860 None:intergenic
GCATCGCGAGCCCTCAAGCA+AGG 0.627145 1_1:+80192931 Msa0047400:CDS
ACTTGGATCAATAAAACCCT+CGG 0.629696 1_1:-80194517 None:intergenic
ATCCAAGTACAGAGAAAACA+AGG 0.632911 1_1:+80194532 Msa0047400:CDS
GAAATTGCCGGCAGTTACAG+GGG 0.636838 1_1:-80193886 None:intergenic
AGATAGGAATCGAGTTGCCG+TGG 0.646382 1_1:+80193059 Msa0047400:CDS
CAGACAGATCAGGTAAAACA+GGG 0.656873 1_1:-80192477 None:intergenic
TCGTTAGGCAACCCCAACGT+AGG 0.670788 1_1:-80192439 None:intergenic
ATTGGAGTGAAACAAAATGG+GGG 0.691057 1_1:-80191378 None:intergenic
AATAACAGGAGTTCCTACGT+TGG 0.693696 1_1:+80192426 Msa0047400:CDS
CATATCTCAACAATGCCCCA+GGG 0.697189 1_1:-80192528 None:intergenic
ATTTCCATATGAAGTGCCTG+AGG 0.702011 1_1:+80193746 Msa0047400:CDS
GATGGCATGGAGATCCAGAG+AGG 0.724095 1_1:+80193936 Msa0047400:CDS
AAGTTGGAACAATAGTGACG+AGG 0.736463 1_1:-80191347 None:intergenic
ACCGCCAATTAAGGACCCTG+GGG 0.741296 1_1:+80192513 Msa0047400:CDS
TTGAAGGTTGAACTACACGT+CGG 0.764042 1_1:-80195313 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATACTTAACTTTT+TGG - chr1_1:80195583-80195602 None:intergenic 10.0%
!!! ATTTGTTCTTTTTTAATGTA+TGG + chr1_1:80191542-80191561 Msa0047400:intron 15.0%
!!! ACTATCTTTTAGAATATATT+TGG + chr1_1:80194049-80194068 Msa0047400:intron 15.0%
!!! CTATCTTTTAGAATATATTT+GGG + chr1_1:80194050-80194069 Msa0047400:intron 15.0%
!! TTATTAAAGAAATAGCTTAT+AGG - chr1_1:80194124-80194143 None:intergenic 15.0%
!! TAAATTACATATTTCAGTAA+TGG - chr1_1:80194364-80194383 None:intergenic 15.0%
!! GAAATATGTAATTTAGTATA+TGG + chr1_1:80194369-80194388 Msa0047400:intron 15.0%
!!! AGATATATTATGTTTTTTCA+AGG + chr1_1:80195394-80195413 Msa0047400:three_prime_UTR 15.0%
!!! TATGTTTTGTTTTGTAAAAG+AGG - chr1_1:80191219-80191238 None:intergenic 20.0%
!! TGATTAAGATATGCTAAATA+AGG + chr1_1:80191932-80191951 Msa0047400:intron 20.0%
!! GATTAAGATATGCTAAATAA+GGG + chr1_1:80191933-80191952 Msa0047400:intron 20.0%
!! AGTAAAATTCATTAAATTCG+CGG - chr1_1:80192202-80192221 None:intergenic 20.0%
!!! AAGCTTATTGTGTTAAATTT+TGG + chr1_1:80192339-80192358 Msa0047400:intron 20.0%
!! AAACAAAGAAAAAAGAAACA+CGG - chr1_1:80192859-80192878 None:intergenic 20.0%
!!! CTTTATTTTTCTGAAGAAAT+AGG + chr1_1:80193204-80193223 Msa0047400:intron 20.0%
!!! TTCTAAAAGATAGTTGTAAA+AGG - chr1_1:80194043-80194062 None:intergenic 20.0%
!!! GTATATGGAATATCTAAAAT+AGG + chr1_1:80194384-80194403 Msa0047400:intron 20.0%
!! TTTCTTCTGATAATACAAAA+AGG - chr1_1:80194734-80194753 None:intergenic 20.0%
!! TATAAAAGGGAGTAAATTAA+GGG - chr1_1:80195007-80195026 None:intergenic 20.0%
!! ATATAAAAGGGAGTAAATTA+AGG - chr1_1:80195008-80195027 None:intergenic 20.0%
!! GTAAAAAAAAATTACACTGA+TGG - chr1_1:80195536-80195555 None:intergenic 20.0%
!! TAAGAAAAACTACATTGATA+GGG - chr1_1:80195612-80195631 None:intergenic 20.0%
!!! TAAGGTTTGGTTTTTTAACA+AGG - chr1_1:80191251-80191270 None:intergenic 25.0%
! ATAGATAGATAGATAAGGTT+TGG - chr1_1:80191264-80191283 None:intergenic 25.0%
! AGAACATAGATAGATAGATA+AGG - chr1_1:80191269-80191288 None:intergenic 25.0%
! TTATTGGAGTGAAACAAAAT+GGG - chr1_1:80191383-80191402 None:intergenic 25.0%
! ATTATTGGAGTGAAACAAAA+TGG - chr1_1:80191384-80191403 None:intergenic 25.0%
! ATGATCAAATTGAGAATGAT+GGG - chr1_1:80191501-80191520 None:intergenic 25.0%
! TATGATCAAATTGAGAATGA+TGG - chr1_1:80191502-80191521 None:intergenic 25.0%
!!! AATGTATGGTGTTGTTTTTT+TGG + chr1_1:80191556-80191575 Msa0047400:intron 25.0%
! TTACAATGCTTTCAAATCTA+GGG - chr1_1:80191748-80191767 None:intergenic 25.0%
! TACATGGGAAATGTTTATTA+CGG - chr1_1:80192820-80192839 None:intergenic 25.0%
! AGATTATATGCAATGTACAT+GGG - chr1_1:80192835-80192854 None:intergenic 25.0%
! AAGATTATATGCAATGTACA+TGG - chr1_1:80192836-80192855 None:intergenic 25.0%
! GGTAAGACATTAATTATATC+AGG + chr1_1:80192952-80192971 Msa0047400:CDS 25.0%
! ATTGATTAAACGTGATTACT+AGG - chr1_1:80193492-80193511 None:intergenic 25.0%
!! TCAAAATGAGTGTTTTTCAT+CGG - chr1_1:80193518-80193537 None:intergenic 25.0%
!!! TTTGATACATGATTTGTTTG+TGG + chr1_1:80193533-80193552 Msa0047400:intron 25.0%
! CTTTCAATAAAGGCAAATTT+CGG - chr1_1:80193776-80193795 None:intergenic 25.0%
! GAAATTTGCCTTTATTGAAA+GGG + chr1_1:80193775-80193794 Msa0047400:CDS 25.0%
! AATAAATGTCCACTAAAGAT+CGG - chr1_1:80193969-80193988 None:intergenic 25.0%
!!! ATGTCATAAGTTGTTTCTAT+AGG + chr1_1:80194244-80194263 Msa0047400:intron 25.0%
!!! AAATGAAGTATTGATGATCT+AGG - chr1_1:80194312-80194331 None:intergenic 25.0%
! AAAACAAAACATGACTATCT+TGG - chr1_1:80194432-80194451 None:intergenic 25.0%
!! GACTATACCTTTAGAAATTA+TGG + chr1_1:80194554-80194573 Msa0047400:CDS 25.0%
! ATATAAGTCTACAAGTCATA+GGG - chr1_1:80194652-80194671 None:intergenic 25.0%
! ATTGTTCCAAATGCATTAAA+CGG - chr1_1:80194889-80194908 None:intergenic 25.0%
! TCCTACTCAAACATATAAAA+GGG - chr1_1:80195020-80195039 None:intergenic 25.0%
! TTCCTACTCAAACATATAAA+AGG - chr1_1:80195021-80195040 None:intergenic 25.0%
! AACAGAAAATGAAGATTTCT+TGG + chr1_1:80195151-80195170 Msa0047400:CDS 25.0%
!! TTAAGGATCTTTATGTTTTC+CGG + chr1_1:80195262-80195281 Msa0047400:exon 25.0%
! GTAAGAAAAACTACATTGAT+AGG - chr1_1:80195613-80195632 None:intergenic 25.0%
!!! TGGTTTTTTAACAAGGTTTG+AGG - chr1_1:80191244-80191263 None:intergenic 30.0%
TATTGGAGTGAAACAAAATG+GGG - chr1_1:80191382-80191401 None:intergenic 30.0%
AAGACTCTTAGAGTGATTAT+TGG - chr1_1:80191399-80191418 None:intergenic 30.0%
CCAACATTGGTATTCAAAAA+TGG - chr1_1:80191428-80191447 None:intergenic 30.0%
!! CCATTTTTGAATACCAATGT+TGG + chr1_1:80191425-80191444 Msa0047400:CDS 30.0%
! TTTTTGAATACCAATGTTGG+AGG + chr1_1:80191428-80191447 Msa0047400:CDS 30.0%
CTTACAATGCTTTCAAATCT+AGG - chr1_1:80191749-80191768 None:intergenic 30.0%
ACTTGTATTGAGATTTGAGA+CGG - chr1_1:80191790-80191809 None:intergenic 30.0%
! CACCTATTAATTCTAGTTAG+TGG + chr1_1:80191898-80191917 Msa0047400:intron 30.0%
CACCACTAACTAGAATTAAT+AGG - chr1_1:80191903-80191922 None:intergenic 30.0%
!! TAAGTTGTTTGTTGTCCATA+AGG + chr1_1:80192085-80192104 Msa0047400:intron 30.0%
! GACTTTGTAACTTTAAGAGA+CGG + chr1_1:80192136-80192155 Msa0047400:intron 30.0%
AGACGGAGTTAAAATATACT+CGG + chr1_1:80192153-80192172 Msa0047400:intron 30.0%
ACTCGGAAATAGTTGTAAAA+TGG + chr1_1:80192170-80192189 Msa0047400:intron 30.0%
GTGACTTGAATCATACATAA+AGG - chr1_1:80192318-80192337 None:intergenic 30.0%
!! TGTTAAATTTTGGTGCAGAA+AGG + chr1_1:80192349-80192368 Msa0047400:intron 30.0%
CTATCAGTAATATCTTCAAG+TGG - chr1_1:80192595-80192614 None:intergenic 30.0%
AGTTTGACCTATTAATCTCA+AGG + chr1_1:80192745-80192764 Msa0047400:intron 30.0%
GTTTGACCTATTAATCTCAA+GGG + chr1_1:80192746-80192765 Msa0047400:intron 30.0%
! AGAAACTGAGTATTTTACGT+TGG + chr1_1:80192889-80192908 Msa0047400:intron 30.0%
! GAAACTGAGTATTTTACGTT+GGG + chr1_1:80192890-80192909 Msa0047400:intron 30.0%
TTGAACTGATACTACAAGAT+AGG + chr1_1:80193043-80193062 Msa0047400:CDS 30.0%
AAGGAACTTCTTCAATATGT+TGG + chr1_1:80193093-80193112 Msa0047400:CDS 30.0%
AACTTCTTCAATATGTTGGA+GGG + chr1_1:80193097-80193116 Msa0047400:CDS 30.0%
!! TTTTCTGAAGAAATAGGAGA+CGG + chr1_1:80193210-80193229 Msa0047400:intron 30.0%
AGATGTTTAGTCAAGGTTTA+AGG - chr1_1:80193324-80193343 None:intergenic 30.0%
! AAGTCTGACATTGAGATTTT+AGG - chr1_1:80193461-80193480 None:intergenic 30.0%
CGAAATTTGCCTTTATTGAA+AGG + chr1_1:80193774-80193793 Msa0047400:CDS 30.0%
TAAAGACAATCCAAACTTAG+AGG + chr1_1:80193827-80193846 Msa0047400:CDS 30.0%
TATAACCATCAAGAACTATG+TGG - chr1_1:80193863-80193882 None:intergenic 30.0%
! GTAGAAAGACACTTTTATGA+TGG + chr1_1:80193918-80193937 Msa0047400:CDS 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr1_1:80194219-80194238 Msa0047400:intron 30.0%
TCATTTGTATGTGATTGAAG+CGG + chr1_1:80194326-80194345 Msa0047400:intron 30.0%
!!! TTCATCTTTTTTTTGTGCAG+CGG + chr1_1:80194455-80194474 Msa0047400:intron 30.0%
! ACCTTTAGAAATTATGGTAG+AGG + chr1_1:80194560-80194579 Msa0047400:CDS 30.0%
! CCTTTAGAAATTATGGTAGA+GGG + chr1_1:80194561-80194580 Msa0047400:CDS 30.0%
GAGGTAATACATATATACCA+TGG + chr1_1:80194615-80194634 Msa0047400:intron 30.0%
GATATAAGTCTACAAGTCAT+AGG - chr1_1:80194653-80194672 None:intergenic 30.0%
TCTGATAATACAAAAAGGTG+CGG - chr1_1:80194729-80194748 None:intergenic 30.0%
! GTTTAATGCATTTGGAACAA+TGG + chr1_1:80194888-80194907 Msa0047400:CDS 30.0%
TAAGAGTCTATTCTTTGACA+TGG + chr1_1:80194926-80194945 Msa0047400:intron 30.0%
! TCCCTTTTATATGTTTGAGT+AGG + chr1_1:80195016-80195035 Msa0047400:intron 30.0%
TATGTTTGAGTAGGAATTTG+AGG + chr1_1:80195025-80195044 Msa0047400:intron 30.0%
CTTTCAATAGCCAAAATACT+TGG - chr1_1:80195067-80195086 None:intergenic 30.0%
ATATCTACCATCCAATATGT+TGG - chr1_1:80195114-80195133 None:intergenic 30.0%
!! TGTTTCTGGTTTGGATAATT+TGG + chr1_1:80195214-80195233 Msa0047400:CDS 30.0%
GAGGATGTAACAAACAACAT+TGG - chr1_1:80191200-80191219 None:intergenic 35.0%
ATTGGAGTGAAACAAAATGG+GGG - chr1_1:80191381-80191400 None:intergenic 35.0%
TCTACTAAATCCTCCAACAT+TGG - chr1_1:80191441-80191460 None:intergenic 35.0%
!! TCAAATTGAGAATGATGGGT+TGG - chr1_1:80191497-80191516 None:intergenic 35.0%
GCTTTCAAATCTAGGGATAA+AGG - chr1_1:80191741-80191760 None:intergenic 35.0%
!! TTCTAGTTAGTGGTGTTGTT+AGG + chr1_1:80191908-80191927 Msa0047400:intron 35.0%
! GCTAAATAAGGGTGTATTAG+CGG + chr1_1:80191944-80191963 Msa0047400:intron 35.0%
! CTAAATAAGGGTGTATTAGC+GGG + chr1_1:80191945-80191964 Msa0047400:intron 35.0%
TGAGTTAAGCTAACACCTTA+TGG - chr1_1:80192103-80192122 None:intergenic 35.0%
! AAGGTGTTAGCTTAACTCAT+AGG + chr1_1:80192104-80192123 Msa0047400:intron 35.0%
GATATCAATACAGACAGATC+AGG - chr1_1:80192490-80192509 None:intergenic 35.0%
! GATCTGTCTGTATTGATATC+TGG + chr1_1:80192490-80192509 Msa0047400:CDS 35.0%
TGGTCTTCCTATTGACAATA+AGG + chr1_1:80192549-80192568 Msa0047400:CDS 35.0%
! CTAATCGCCTTATTGTCAAT+AGG - chr1_1:80192559-80192578 None:intergenic 35.0%
ACTGATAGTCTCAAGATTTC+TGG + chr1_1:80192607-80192626 Msa0047400:CDS 35.0%
ACTTGTCCCTTGAGATTAAT+AGG - chr1_1:80192755-80192774 None:intergenic 35.0%
! GTTTTACAACTGTCTCTGAA+GGG - chr1_1:80192784-80192803 None:intergenic 35.0%
TAATGTCTTACCTTGCTTGA+GGG - chr1_1:80192944-80192963 None:intergenic 35.0%
TTAATGTCTTACCTTGCTTG+AGG - chr1_1:80192945-80192964 None:intergenic 35.0%
GCTGAATCAAAGAAAGAACA+TGG + chr1_1:80192979-80192998 Msa0047400:CDS 35.0%
AATTGAACTGCTTGATAAGC+TGG + chr1_1:80193002-80193021 Msa0047400:CDS 35.0%
! TGAAGAAGTTCCTTCTGTTT+TGG - chr1_1:80193087-80193106 None:intergenic 35.0%
GAACTTCTTCAATATGTTGG+AGG + chr1_1:80193096-80193115 Msa0047400:CDS 35.0%
GGTATTTATGCGATTTATGC+AGG - chr1_1:80193146-80193165 None:intergenic 35.0%
TGTTCTCAGTGAGAATAAGA+AGG + chr1_1:80193181-80193200 Msa0047400:intron 35.0%
! TTTCTGAAGAAATAGGAGAC+GGG + chr1_1:80193211-80193230 Msa0047400:intron 35.0%
AGCATTAGTGCAAACCTATT+AGG + chr1_1:80193292-80193311 Msa0047400:intron 35.0%
TTAGTCAAGGTTTAAGGACT+TGG - chr1_1:80193318-80193337 None:intergenic 35.0%
ACTAGGTAGATGTTTAGTCA+AGG - chr1_1:80193331-80193350 None:intergenic 35.0%
TAAACATCTACCTAGTCAAC+AGG + chr1_1:80193335-80193354 Msa0047400:intron 35.0%
!! ATTGAGATTTTAGGTGCAGT+TGG - chr1_1:80193452-80193471 None:intergenic 35.0%
!! CATGATTTGTTTGTGGTATC+TGG + chr1_1:80193540-80193559 Msa0047400:intron 35.0%
AATCTTCCATTGTTAGAAGG+AGG - chr1_1:80193600-80193619 None:intergenic 35.0%
CTCAATCTTCCATTGTTAGA+AGG - chr1_1:80193603-80193622 None:intergenic 35.0%
CTTCTAACAATGGAAGATTG+AGG + chr1_1:80193601-80193620 Msa0047400:intron 35.0%
AACACACATTCCTCTAAGTT+TGG - chr1_1:80193840-80193859 None:intergenic 35.0%
! AAGACACTTTTATGATGGCA+TGG + chr1_1:80193923-80193942 Msa0047400:CDS 35.0%
!!! CTTTTGATTTCCCTTGTAGT+TGG + chr1_1:80193996-80194015 Msa0047400:intron 35.0%
AGCGCTAGTTAAGCTATTTA+TGG - chr1_1:80194084-80194103 None:intergenic 35.0%
! GCTGATTTCGTTATCTATCT+TGG + chr1_1:80194184-80194203 Msa0047400:intron 35.0%
TATCTATCTTGGAGAGCTTA+TGG + chr1_1:80194195-80194214 Msa0047400:intron 35.0%
! TTGATGATCTAGGATCTGTT+TGG - chr1_1:80194302-80194321 None:intergenic 35.0%
ACTTGGATCAATAAAACCCT+CGG - chr1_1:80194520-80194539 None:intergenic 35.0%
ATCCAAGTACAGAGAAAACA+AGG + chr1_1:80194532-80194551 Msa0047400:CDS 35.0%
CCCTCTACCATAATTTCTAA+AGG - chr1_1:80194564-80194583 None:intergenic 35.0%
AATTATGGTAGAGGGAGAAA+AGG + chr1_1:80194569-80194588 Msa0047400:CDS 35.0%
! TCTAGAGTTTCGCCATAAAA+AGG - chr1_1:80194597-80194616 None:intergenic 35.0%
! TTTTTATGGCGAAACTCTAG+AGG + chr1_1:80194596-80194615 Msa0047400:CDS 35.0%
AAGCTTCCGTTTAATGCATT+TGG + chr1_1:80194880-80194899 Msa0047400:CDS 35.0%
! GATGGTAGATATGCAGTTTT+TGG + chr1_1:80195122-80195141 Msa0047400:CDS 35.0%
!! GAATCCATTCAAGTTGTTTC+TGG + chr1_1:80195200-80195219 Msa0047400:CDS 35.0%
CAAACCAGAAACAACTTGAA+TGG - chr1_1:80195207-80195226 None:intergenic 35.0%
!! CATTCAAGTTGTTTCTGGTT+TGG + chr1_1:80195205-80195224 Msa0047400:CDS 35.0%
CTTAACTGAATGCTAGATTC+TGG - chr1_1:80195367-80195386 None:intergenic 35.0%
AATCTAGCATTCAGTTAAGC+AGG + chr1_1:80195368-80195387 Msa0047400:three_prime_UTR 35.0%
! GAAATTGTGACTGTTTTGTG+AGG + chr1_1:80195448-80195467 Msa0047400:three_prime_UTR 35.0%
GTGAGGAAATTGTTGTATGT+AGG + chr1_1:80195465-80195484 Msa0047400:three_prime_UTR 35.0%
CTCTTTCTCTCTACCTTCAA+TGG + chr1_1:80191310-80191329 Msa0047400:exon 40.0%
!! ATGATGGATGATGCCATTGA+AGG - chr1_1:80191326-80191345 None:intergenic 40.0%
ACAATAGTGACGAGGAATGA+TGG - chr1_1:80191342-80191361 None:intergenic 40.0%
AAGTTGGAACAATAGTGACG+AGG - chr1_1:80191350-80191369 None:intergenic 40.0%
!! AATTGAGAATGATGGGTTGG+TGG - chr1_1:80191494-80191513 None:intergenic 40.0%
TGCGATATCTTTAGCACTTG+CGG + chr1_1:80192396-80192415 Msa0047400:CDS 40.0%
ATATCTTTAGCACTTGCGGT+CGG + chr1_1:80192400-80192419 Msa0047400:CDS 40.0%
AATAACAGGAGTTCCTACGT+TGG + chr1_1:80192426-80192445 Msa0047400:CDS 40.0%
ATAACAGGAGTTCCTACGTT+GGG + chr1_1:80192427-80192446 Msa0047400:CDS 40.0%
CAGACAGATCAGGTAAAACA+GGG - chr1_1:80192480-80192499 None:intergenic 40.0%
ACAGACAGATCAGGTAAAAC+AGG - chr1_1:80192481-80192500 None:intergenic 40.0%
!! TCTCAAGATTTCTGGAGTCA+AGG + chr1_1:80192615-80192634 Msa0047400:CDS 40.0%
! CGTTTTACAACTGTCTCTGA+AGG - chr1_1:80192785-80192804 None:intergenic 40.0%
AGAACATCGATGGAAGGATA+GGG - chr1_1:80193167-80193186 None:intergenic 40.0%
ATTCTCACTGAGAACATCGA+TGG - chr1_1:80193177-80193196 None:intergenic 40.0%
GTTTAAGGACTTGGCCTAAT+AGG - chr1_1:80193309-80193328 None:intergenic 40.0%
CAACTAGTGATCCAGTGATT+CGG - chr1_1:80193410-80193429 None:intergenic 40.0%
!!! AGGAGGATCGTTGTTTTTGT+CGG - chr1_1:80193583-80193602 None:intergenic 40.0%
AACGATCCTCCTTCTAACAA+TGG + chr1_1:80193591-80193610 Msa0047400:intron 40.0%
CTAACAATGGAAGATTGAGG+AGG + chr1_1:80193604-80193623 Msa0047400:intron 40.0%
GTTGAAGAAGACATGGTTGA+TGG + chr1_1:80193723-80193742 Msa0047400:CDS 40.0%
! ATTTCCATATGAAGTGCCTG+AGG + chr1_1:80193746-80193765 Msa0047400:CDS 40.0%
TATTCCTCAGGCACTTCATA+TGG - chr1_1:80193753-80193772 None:intergenic 40.0%
GTGTTCCACATAGTTCTTGA+TGG + chr1_1:80193855-80193874 Msa0047400:CDS 40.0%
TACCAAGTCAACGAAATTGC+CGG - chr1_1:80193901-80193920 None:intergenic 40.0%
GGTATAGATCCGATCTTTAG+TGG + chr1_1:80193957-80193976 Msa0047400:intron 40.0%
GATTTCCCTTGTAGTTGGTT+TGG + chr1_1:80194001-80194020 Msa0047400:intron 40.0%
CTTCACCAAACCAACTACAA+GGG - chr1_1:80194009-80194028 None:intergenic 40.0%
TCTTCACCAAACCAACTACA+AGG - chr1_1:80194010-80194029 None:intergenic 40.0%
ACTTCTGTGAGCTTATCTAC+TGG - chr1_1:80194275-80194294 None:intergenic 40.0%
!!! TCTTTTTTTTGTGCAGCGGA+CGG + chr1_1:80194459-80194478 Msa0047400:intron 40.0%
!!! GTCCTTGTTTTCTCTGTACT+TGG - chr1_1:80194537-80194556 None:intergenic 40.0%
!!! GGAGAAAAGGCACCTTTTTA+TGG + chr1_1:80194582-80194601 Msa0047400:CDS 40.0%
ATAGGGTTATGTGATCTCCA+TGG - chr1_1:80194635-80194654 None:intergenic 40.0%
! CAAAAAGGTGCGGAAAAGAT+TGG - chr1_1:80194719-80194738 None:intergenic 40.0%
! TTTGAACCCTCTGTCTTGTT+TGG + chr1_1:80194826-80194845 Msa0047400:intron 40.0%
TAGGAATTTGAGGACAACTC+TGG + chr1_1:80195035-80195054 Msa0047400:intron 40.0%
TCCAAGCAATGCCAACATAT+TGG + chr1_1:80195100-80195119 Msa0047400:CDS 40.0%
TCCAATATGTTGGCATTGCT+TGG - chr1_1:80195104-80195123 None:intergenic 40.0%
AGCAATGCCAACATATTGGA+TGG + chr1_1:80195104-80195123 Msa0047400:CDS 40.0%
AGATTTCTTGGCAGACCTTA+AGG + chr1_1:80195163-80195182 Msa0047400:CDS 40.0%
CTATGACATCACCAACCTTA+AGG - chr1_1:80195181-80195200 None:intergenic 40.0%
TAACCAGCAATCTTGTAGCT+GGG - chr1_1:80195245-80195264 None:intergenic 40.0%
TTAACCAGCAATCTTGTAGC+TGG - chr1_1:80195246-80195265 None:intergenic 40.0%
! AGCTACAAGATTGCTGGTTA+AGG + chr1_1:80195245-80195264 Msa0047400:CDS 40.0%
CGTGCGCAATATTTAATAGC+CGG - chr1_1:80195284-80195303 None:intergenic 40.0%
TTGAAGGTTGAACTACACGT+CGG - chr1_1:80195316-80195335 None:intergenic 40.0%
ACGTGTAGTTCAACCTTCAA+TGG + chr1_1:80195316-80195335 Msa0047400:three_prime_UTR 40.0%
GTTCAACCTTCAATGGTTAC+TGG + chr1_1:80195323-80195342 Msa0047400:three_prime_UTR 40.0%
ACTTCTCCAGTAACCATTGA+AGG - chr1_1:80195332-80195351 None:intergenic 40.0%
AGAGAAAGAGACAGTGGAAG+GGG - chr1_1:80191300-80191319 None:intergenic 45.0%
GAGAGAAAGAGACAGTGGAA+GGG - chr1_1:80191301-80191320 None:intergenic 45.0%
AGAGAGAAAGAGACAGTGGA+AGG - chr1_1:80191302-80191321 None:intergenic 45.0%
AGGTAGAGAGAAAGAGACAG+TGG - chr1_1:80191306-80191325 None:intergenic 45.0%
AATGGGGGTAGTTGCAAAGT+TGG - chr1_1:80191366-80191385 None:intergenic 45.0%
!! AATGATGGGTTGGTGGAGTT+TGG - chr1_1:80191487-80191506 None:intergenic 45.0%
TATCTTTAGCACTTGCGGTC+GGG + chr1_1:80192401-80192420 Msa0047400:CDS 45.0%
TAACAGGAGTTCCTACGTTG+GGG + chr1_1:80192428-80192447 Msa0047400:CDS 45.0%
TTAGCTGCATGTGCATCGTT+AGG - chr1_1:80192457-80192476 None:intergenic 45.0%
GATATCTGGACCGCCAATTA+AGG + chr1_1:80192504-80192523 Msa0047400:CDS 45.0%
CATATCTCAACAATGCCCCA+GGG - chr1_1:80192531-80192550 None:intergenic 45.0%
TGGGTTGTAGAATGTGAGAC+AGG + chr1_1:80192909-80192928 Msa0047400:intron 45.0%
!!! TTCCTTCTGTTTTGGTGCCA+CGG - chr1_1:80193079-80193098 None:intergenic 45.0%
GAGAACATCGATGGAAGGAT+AGG - chr1_1:80193168-80193187 None:intergenic 45.0%
TCACTGAGAACATCGATGGA+AGG - chr1_1:80193173-80193192 None:intergenic 45.0%
ATCTACCTAGTCAACAGGCT+AGG + chr1_1:80193340-80193359 Msa0047400:intron 45.0%
CGTTGAGTGATCCAGTGATT+CGG - chr1_1:80193373-80193392 None:intergenic 45.0%
CGAATCACTGGATCACTCAA+CGG + chr1_1:80193371-80193390 Msa0047400:intron 45.0%
GAATCACTGGATCACTCAAC+GGG + chr1_1:80193372-80193391 Msa0047400:intron 45.0%
TATGCTATTGGCCGAATCAC+TGG + chr1_1:80193396-80193415 Msa0047400:intron 45.0%
ATGGAAGATTGAGGAGGACT+TGG + chr1_1:80193610-80193629 Msa0047400:intron 45.0%
TCTCAGCTGCAGTCAATGAA+AGG - chr1_1:80193675-80193694 None:intergenic 45.0%
! CTGCAGTGTTGAAGAAGACA+TGG + chr1_1:80193716-80193735 Msa0047400:intron 45.0%
GGCAAATTTCGGTATTCCTC+AGG - chr1_1:80193765-80193784 None:intergenic 45.0%
GCTGCTCTCCCTTTCAATAA+AGG - chr1_1:80193786-80193805 None:intergenic 45.0%
GAGAGCAGCTGTAGATATGA+AGG + chr1_1:80193797-80193816 Msa0047400:CDS 45.0%
TATAATGCCCCTGTAACTGC+CGG + chr1_1:80193879-80193898 Msa0047400:CDS 45.0%
AGATCGGATCTATACCTCTC+TGG - chr1_1:80193953-80193972 None:intergenic 45.0%
!!! CTTTTTTTTGTGCAGCGGAC+GGG + chr1_1:80194460-80194479 Msa0047400:intron 45.0%
TCCTGTCCAAACAAGACAGA+GGG - chr1_1:80194835-80194854 None:intergenic 45.0%
ACAGGAGCTTGGTCTATACA+AGG + chr1_1:80194849-80194868 Msa0047400:intron 45.0%
! TGCATTTGGAACAATGGCGA+TGG + chr1_1:80194894-80194913 Msa0047400:CDS 45.0%
!!! CTGGCTCTAGCCAAGTATTT+TGG + chr1_1:80195054-80195073 Msa0047400:CDS 45.0%
TTCTTGGCAGACCTTAAGGT+TGG + chr1_1:80195167-80195186 Msa0047400:CDS 45.0%
AACCAGCAATCTTGTAGCTG+GGG - chr1_1:80195244-80195263 None:intergenic 45.0%
CTTGCGGTCGGGTTAATAAC+AGG + chr1_1:80192412-80192431 Msa0047400:CDS 50.0%
AATGCCCCAGGGTCCTTAAT+TGG - chr1_1:80192520-80192539 None:intergenic 50.0%
CCATATCTCAACAATGCCCC+AGG - chr1_1:80192532-80192551 None:intergenic 50.0%
!! CCTGGGGCATTGTTGAGATA+TGG + chr1_1:80192529-80192548 Msa0047400:CDS 50.0%
ACGCACTACGCAGTAAGCAT+AGG - chr1_1:80192699-80192718 None:intergenic 50.0%
CTGCTTGATAAGCTGGAAGC+TGG + chr1_1:80193009-80193028 Msa0047400:CDS 50.0%
! AGATAGGAATCGAGTTGCCG+TGG + chr1_1:80193059-80193078 Msa0047400:CDS 50.0%
! AGTAGCCTAGCCTGTTGACT+AGG - chr1_1:80193348-80193367 None:intergenic 50.0%
TAGTCAACAGGCTAGGCTAC+TGG + chr1_1:80193347-80193366 Msa0047400:intron 50.0%
!! CACTCAACGGGCTATGCTAT+TGG + chr1_1:80193384-80193403 Msa0047400:intron 50.0%
ACTGCAGCTGAGATGTTCCT+GGG + chr1_1:80193682-80193701 Msa0047400:intron 50.0%
GAAATTGCCGGCAGTTACAG+GGG - chr1_1:80193889-80193908 None:intergenic 50.0%
CGAAATTGCCGGCAGTTACA+GGG - chr1_1:80193890-80193909 None:intergenic 50.0%
ACGAAATTGCCGGCAGTTAC+AGG - chr1_1:80193891-80193910 None:intergenic 50.0%
! TGCCGGCAATTTCGTTGACT+TGG + chr1_1:80193896-80193915 Msa0047400:CDS 50.0%
!! GACGGGTTTGTTGTCCAAAC+CGG + chr1_1:80194477-80194496 Msa0047400:CDS 50.0%
GGATCAATAAAACCCTCGGC+AGG - chr1_1:80194516-80194535 None:intergenic 50.0%
!! ACCCTCTGTCTTGTTTGGAC+AGG + chr1_1:80194831-80194850 Msa0047400:intron 50.0%
CTCCTGTCCAAACAAGACAG+AGG - chr1_1:80194836-80194855 None:intergenic 50.0%
!! GTCTTGTTTGGACAGGAGCT+TGG + chr1_1:80194838-80194857 Msa0047400:intron 50.0%
AACCCCAGCTACAAGATTGC+TGG + chr1_1:80195239-80195258 Msa0047400:CDS 50.0%
TCGTTAGGCAACCCCAACGT+AGG - chr1_1:80192442-80192461 None:intergenic 55.0%
GACCGCCAATTAAGGACCCT+GGG + chr1_1:80192512-80192531 Msa0047400:CDS 55.0%
ACCGCCAATTAAGGACCCTG+GGG + chr1_1:80192513-80192532 Msa0047400:CDS 55.0%
TGCCGTGGCACCAAAACAGA+AGG + chr1_1:80193074-80193093 Msa0047400:CDS 55.0%
TAGGCTACTGGCCGAATCAC+TGG + chr1_1:80193359-80193378 Msa0047400:intron 55.0%
GACTGCAGCTGAGATGTTCC+TGG + chr1_1:80193681-80193700 Msa0047400:intron 55.0%
CTGCAGCTGAGATGTTCCTG+GGG + chr1_1:80193683-80193702 Msa0047400:intron 55.0%
CTGCAGAAATGCAATGCCCC+AGG - chr1_1:80193702-80193721 None:intergenic 55.0%
GATGGCATGGAGATCCAGAG+AGG + chr1_1:80193936-80193955 Msa0047400:CDS 55.0%
GGACCGCCAATTAAGGACCC+TGG + chr1_1:80192511-80192530 Msa0047400:CDS 60.0%
GCCCCAGGGTCCTTAATTGG+CGG - chr1_1:80192517-80192536 None:intergenic 60.0%
GTCCAAACCGGTGACCCTGA+AGG + chr1_1:80194489-80194508 Msa0047400:CDS 60.0%
! GACCTTCAGGGTCACCGGTT+TGG - chr1_1:80194494-80194513 None:intergenic 60.0%
AACCCTCGGCAGGACCTTCA+GGG - chr1_1:80194506-80194525 None:intergenic 60.0%
AAACCCTCGGCAGGACCTTC+AGG - chr1_1:80194507-80194526 None:intergenic 60.0%
GCATCGCGAGCCCTCAAGCA+AGG + chr1_1:80192931-80192950 Msa0047400:CDS 65.0%
GGCAGGACCTTCAGGGTCAC+CGG - chr1_1:80194499-80194518 None:intergenic 65.0%
TGACCCTGAAGGTCCTGCCG+AGG + chr1_1:80194500-80194519 Msa0047400:CDS 65.0%
GACCCTGAAGGTCCTGCCGA+GGG + chr1_1:80194501-80194520 Msa0047400:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 80191195 80195656 80191195 ID=Msa0047400;Name=Msa0047400
chr1_1 mRNA 80191195 80195656 80191195 ID=Msa0047400-mRNA-1;Parent=Msa0047400;Name=Msa0047400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=134|1|1|1|1|1|7|391|455
chr1_1 exon 80191195 80191526 80191195 ID=Msa0047400-mRNA-1:exon:27717;Parent=Msa0047400-mRNA-1
chr1_1 exon 80192367 80192657 80192367 ID=Msa0047400-mRNA-1:exon:27718;Parent=Msa0047400-mRNA-1
chr1_1 exon 80192919 80193118 80192919 ID=Msa0047400-mRNA-1:exon:27719;Parent=Msa0047400-mRNA-1
chr1_1 exon 80193722 80193957 80193722 ID=Msa0047400-mRNA-1:exon:27720;Parent=Msa0047400-mRNA-1
chr1_1 exon 80194475 80194617 80194475 ID=Msa0047400-mRNA-1:exon:27721;Parent=Msa0047400-mRNA-1
chr1_1 exon 80194853 80194924 80194853 ID=Msa0047400-mRNA-1:exon:27722;Parent=Msa0047400-mRNA-1
chr1_1 exon 80195038 80195656 80195038 ID=Msa0047400-mRNA-1:exon:27723;Parent=Msa0047400-mRNA-1
chr1_1 five_prime_UTR 80191195 80191328 80191195 ID=Msa0047400-mRNA-1:five_prime_utr;Parent=Msa0047400-mRNA-1
chr1_1 CDS 80191329 80191526 80191329 ID=Msa0047400-mRNA-1:cds;Parent=Msa0047400-mRNA-1
chr1_1 CDS 80192367 80192657 80192367 ID=Msa0047400-mRNA-1:cds;Parent=Msa0047400-mRNA-1
chr1_1 CDS 80192919 80193118 80192919 ID=Msa0047400-mRNA-1:cds;Parent=Msa0047400-mRNA-1
chr1_1 CDS 80193722 80193957 80193722 ID=Msa0047400-mRNA-1:cds;Parent=Msa0047400-mRNA-1
chr1_1 CDS 80194475 80194617 80194475 ID=Msa0047400-mRNA-1:cds;Parent=Msa0047400-mRNA-1
chr1_1 CDS 80194853 80194924 80194853 ID=Msa0047400-mRNA-1:cds;Parent=Msa0047400-mRNA-1
chr1_1 CDS 80195038 80195265 80195038 ID=Msa0047400-mRNA-1:cds;Parent=Msa0047400-mRNA-1
chr1_1 three_prime_UTR 80195266 80195656 80195266 ID=Msa0047400-mRNA-1:three_prime_utr;Parent=Msa0047400-mRNA-1
Gene Sequence

>Msa0047400

ATGGCATCATCCATCATTCCTCGTCACTATTGTTCCAACTTTGCAACTACCCCCATTTTGTTTCACTCCAATAATCACTCTAAGAGTCTTAATTATCCATTTTTGAATACCAATGTTGGAGGATTTAGTAGAAGTTTCACTACTCGTTGCTCTTACCAAACTCCACCAACCCATCATTCTCAATTTGATCATAAACATAAAGGAAAATCATTTTGCTTAAAGCAATGTGCGATATCTTTAGCACTTGCGGTCGGGTTAATAACAGGAGTTCCTACGTTGGGGTTGCCTAACGATGCACATGCAGCTAACCCTGTTTTACCTGATCTGTCTGTATTGATATCTGGACCGCCAATTAAGGACCCTGGGGCATTGTTGAGATATGGTCTTCCTATTGACAATAAGGCGATTAGAGAAGTTCAAAAACCACTTGAAGATATTACTGATAGTCTCAAGATTTCTGGAGTCAAGGCACTCGACTCTGTCGAAAGAAATGTGAGACAGGCATCGCGAGCCCTCAAGCAAGGTAAGACATTAATTATATCAGGTTTAGCTGAATCAAAGAAAGAACATGGAATTGAACTGCTTGATAAGCTGGAAGCTGGTATCGATGAGTTTGAACTGATACTACAAGATAGGAATCGAGTTGCCGTGGCACCAAAACAGAAGGAACTTCTTCAATATGTTGGAGGTGTTGAAGAAGACATGGTTGATGGATTTCCATATGAAGTGCCTGAGGAATACCGAAATTTGCCTTTATTGAAAGGGAGAGCAGCTGTAGATATGAAGGTCAAGATTAAAGACAATCCAAACTTAGAGGAATGTGTGTTCCACATAGTTCTTGATGGTTATAATGCCCCTGTAACTGCCGGCAATTTCGTTGACTTGGTAGAAAGACACTTTTATGATGGCATGGAGATCCAGAGAGCGGACGGGTTTGTTGTCCAAACCGGTGACCCTGAAGGTCCTGCCGAGGGTTTTATTGATCCAAGTACAGAGAAAACAAGGACTATACCTTTAGAAATTATGGTAGAGGGAGAAAAGGCACCTTTTTATGGCGAAACTCTAGAGGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCATTTGGAACAATGGCGATGGCAAGAGATGAATTTGAGGACAACTCTGGCTCTAGCCAAGTATTTTGGCTATTGAAAGAAAGTGAGCTAACTCCAAGCAATGCCAACATATTGGATGGTAGATATGCAGTTTTTGGCTATGTAACAGAAAATGAAGATTTCTTGGCAGACCTTAAGGTTGGTGATGTCATAGAATCCATTCAAGTTGTTTCTGGTTTGGATAATTTGGTGAACCCCAGCTACAAGATTGCTGGTTAA

Protein sequence

>Msa0047400

MASSIIPRHYCSNFATTPILFHSNNHSKSLNYPFLNTNVGGFSRSFTTRCSYQTPPTHHSQFDHKHKGKSFCLKQCAISLALAVGLITGVPTLGLPNDAHAANPVLPDLSVLISGPPIKDPGALLRYGLPIDNKAIREVQKPLEDITDSLKISGVKALDSVERNVRQASRALKQGKTLIISGLAESKKEHGIELLDKLEAGIDEFELILQDRNRVAVAPKQKELLQYVGGVEEDMVDGFPYEVPEEYRNLPLLKGRAAVDMKVKIKDNPNLEECVFHIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKAPFYGETLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEDFLADLKVGDVIESIQVVSGLDNLVNPSYKIAG*