AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0531270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531270 MtrunA17_Chr4g0004251 95.686 255 11 0 1 255 1 255 4.02e-178 489
Msa0531270 MtrunA17_Chr2g0323811 32.547 212 134 3 43 251 55 260 2.66e-37 132
Msa0531270 MtrunA17_Chr5g0407481 34.351 131 83 1 124 251 2 132 1.52e-22 90.1
Msa0531270 MtrunA17_Chr2g0323801 31.538 130 82 2 124 251 2 126 1.14e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531270 AT1G04940.1 63.750 240 80 2 22 255 36 274 1.78e-105 307
Msa0531270 AT1G04945.3 60.633 221 80 2 22 236 36 255 6.78e-86 268
Msa0531270 AT4G03320.1 35.000 220 130 5 38 251 59 271 3.67e-40 140

Find 80 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAATTGGAATGCATTTC+TGG 0.102228 4_1:-5470203 Msa0531270:CDS
TTCACCCTTCATATGGTATT+TGG 0.132090 4_1:+5470076 None:intergenic
TCTCAAGTTTCCGAAGTTTA+TGG 0.173905 4_1:-5472644 Msa0531270:CDS
GATGCCACTGGGGTTCTATT+GGG 0.221927 4_1:-5470226 Msa0531270:CDS
GGATGCCACTGGGGTTCTAT+TGG 0.233429 4_1:-5470227 Msa0531270:CDS
TCAAATTTGTGTCATTATTC+AGG 0.234665 4_1:-5472871 Msa0531270:intron
GGGTTCTATTGGGGTAAAAT+TGG 0.263490 4_1:-5470216 Msa0531270:CDS
GAGATAGCCTTGCAAGTTAC+AGG 0.289946 4_1:-5470264 Msa0531270:CDS
CTTCGCTGCGCAAGTCTTGT+AGG 0.317793 4_1:-5470611 Msa0531270:CDS
CAAACTGATTAGCCATTCTA+TGG 0.327158 4_1:+5469983 None:intergenic
CTCAAGTTTCCGAAGTTTAT+GGG 0.327570 4_1:-5472643 Msa0531270:CDS
TGCGTTAGGTGTGCCCTTAC+TGG 0.339865 4_1:-5470141 Msa0531270:CDS
ACTAGTGATTCAAGCATGAT+TGG 0.342277 4_1:-5472735 Msa0531270:intron
ATCAAATTTATCTGTATTCT+CGG 0.358270 4_1:-5469894 Msa0531270:three_prime_UTR
GGCACACCTAACGCACTCTA+TGG 0.372183 4_1:+5470149 None:intergenic
CTATGGAAGTAAAGAGATAA+AGG 0.374679 4_1:+5470166 None:intergenic
AACTCGAATGCCTCAATAAA+CGG 0.375295 4_1:+5470432 None:intergenic
TACATATTTCACCCTTCATA+TGG 0.376846 4_1:+5470069 None:intergenic
TGTGAGCCGTTGGATGCCAC+TGG 0.406570 4_1:-5470238 Msa0531270:CDS
AGTGTTCTCCACCACCATCT+TGG 0.422947 4_1:+5470525 None:intergenic
TTACTTCCATAGAGTGCGTT+AGG 0.425451 4_1:-5470155 Msa0531270:CDS
TTATCTCTTGCCTATCCATC+AGG 0.444896 4_1:-5470490 Msa0531270:CDS
GATGGATAGGCAAGAGATAA+GGG 0.454516 4_1:+5470493 None:intergenic
CGCTTGTCAAATGCCTGCTA+AGG 0.455039 4_1:-5472673 Msa0531270:CDS
ATGCCACTGGGGTTCTATTG+GGG 0.470377 4_1:-5470225 Msa0531270:CDS
GTGAGCCGTTGGATGCCACT+GGG 0.473897 4_1:-5470237 Msa0531270:CDS
CAATCTTCACCCGTTTATTG+AGG 0.476868 4_1:-5470442 Msa0531270:CDS
ACTCGAATGCCTCAATAAAC+GGG 0.477425 4_1:+5470433 None:intergenic
TCAAATTTATCTGTATTCTC+GGG 0.482206 4_1:-5469893 Msa0531270:three_prime_UTR
TATGCTGCATCACAGACAAA+AGG 0.482262 4_1:+5470102 None:intergenic
TGATGGATAGGCAAGAGATA+AGG 0.482592 4_1:+5470492 None:intergenic
TTCGCTGCGCAAGTCTTGTA+GGG 0.489910 4_1:-5470610 Msa0531270:CDS
TATGAAGGGTGAAATATGTA+AGG 0.493929 4_1:-5470066 Msa0531270:exon
TATATCCAAATACCATATGA+AGG 0.493979 4_1:-5470081 Msa0531270:CDS
ATGAAGGAAGGCTCATCTGC+TGG 0.500226 4_1:-5470576 Msa0531270:CDS
TTCAGATTTCACGTTGCCGT+CGG 0.502375 4_1:-5470297 Msa0531270:CDS
ATATAACTAAAATGTACTCA+AGG 0.510206 4_1:+5469921 None:intergenic
TAGGGCCCCTCGAGCAATGA+AGG 0.513500 4_1:-5470592 Msa0531270:CDS
TGTTAAGCAGAACCATAGAA+TGG 0.514387 4_1:-5469995 Msa0531270:three_prime_UTR
CAATTGGCAGTCTACCTAGA+TGG 0.514868 4_1:-5470386 Msa0531270:CDS
GAGCCTTCCTTCATTGCTCG+AGG 0.525595 4_1:+5470585 None:intergenic
TCAAGCATGATTGGAAATGT+TGG 0.526715 4_1:-5472726 Msa0531270:exon
TATCCGCATACATACCAGTA+AGG 0.527566 4_1:+5470127 None:intergenic
AAGGGTGAAATATGTAAGGA+AGG 0.534388 4_1:-5470062 Msa0531270:exon
GTAACACAAAACAGAACCTT+GGG 0.535984 4_1:+5472695 None:intergenic
AGCCTTCCTTCATTGCTCGA+GGG 0.536520 4_1:+5470586 None:intergenic
ATGCTGCATCACAGACAAAA+GGG 0.543856 4_1:+5470103 None:intergenic
CTACAAGACTTGCGCAGCGA+AGG 0.549633 4_1:+5470612 None:intergenic
TTACAGGGCTTGTGAGCCGT+TGG 0.554372 4_1:-5470248 Msa0531270:CDS
TAGCATACATCCACACCTGA+TGG 0.557726 4_1:+5470475 None:intergenic
CGTAACACAAAACAGAACCT+TGG 0.561329 4_1:+5472694 None:intergenic
CTTGAGACAGAAACCTTAGC+AGG 0.566926 4_1:+5472660 None:intergenic
AGATAGCCTTGCAAGTTACA+GGG 0.572582 4_1:-5470263 Msa0531270:CDS
AAGTATGTCCCCATAAACTT+CGG 0.579692 4_1:+5472634 None:intergenic
TACATCCACACCTGATGGAT+AGG 0.579710 4_1:+5470480 None:intergenic
CCAGAAAACCAAGATGGTGG+TGG 0.582114 4_1:-5470533 Msa0531270:CDS
TATGCTATGAGAGACCATCT+AGG 0.591244 4_1:+5470372 None:intergenic
CACAAGCCCTGTAACTTGCA+AGG 0.594415 4_1:+5470257 None:intergenic
TCAAGTTTCCGAAGTTTATG+GGG 0.594717 4_1:-5472642 Msa0531270:CDS
ACGTGAAATCTGAAGAAATG+AGG 0.595610 4_1:+5470306 None:intergenic
TTGCGCAGCGAAGGTAACAC+AGG 0.597116 4_1:+5470621 None:intergenic
TTGCGTATCTTACCATTGTG+AGG 0.599587 4_1:-5470341 Msa0531270:CDS
GCCTTCCTTCATTGCTCGAG+GGG 0.601540 4_1:+5470587 None:intergenic
TCTTGCCTATCCATCAGGTG+TGG 0.604602 4_1:-5470485 Msa0531270:CDS
TATAACTAAAATGTACTCAA+GGG 0.614178 4_1:+5469922 None:intergenic
GCCCCTCGAGCAATGAAGGA+AGG 0.617175 4_1:-5470588 Msa0531270:CDS
AATGTTGGCACTATATCCCA+AGG 0.625899 4_1:-5472711 Msa0531270:CDS
ATATCCAAATACCATATGAA+GGG 0.626189 4_1:-5470080 Msa0531270:CDS
CGATGACCAGAAAACCAAGA+TGG 0.627736 4_1:-5470539 Msa0531270:CDS
CTCAAGGGAAAATATCAAAG+AGG 0.636624 4_1:+5469937 None:intergenic
AGAACCCCAGTGGCATCCAA+CGG 0.641127 4_1:+5470232 None:intergenic
CCATTGTGAGGAGAAAAGAA+TGG 0.645047 4_1:-5470329 Msa0531270:CDS
TGCCCTTACTGGTATGTATG+CGG 0.645316 4_1:-5470130 Msa0531270:CDS
ATCCGCATACATACCAGTAA+GGG 0.651307 4_1:+5470128 None:intergenic
TGACCAGAAAACCAAGATGG+TGG 0.673799 4_1:-5470536 Msa0531270:CDS
ACTTTAGAGATTAAACCAAG+AGG 0.685569 4_1:-5472615 Msa0531270:intron
TGCGCAGCGAAGGTAACACA+GGG 0.711989 4_1:+5470622 None:intergenic
TATCTCGATTAACATTCCGA+CGG 0.723472 4_1:+5470281 None:intergenic
TGAGCCGTTGGATGCCACTG+GGG 0.729430 4_1:-5470236 Msa0531270:CDS
TTACCCCAATAGAACCCCAG+TGG 0.740833 4_1:+5470222 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGAATAATAAAAAAAC+TGG - chr4_1:5470057-5470076 Msa0531270:three_prime_UTR 10.0%
!!! TTTTGAATAATAAAAAAACT+GGG - chr4_1:5470058-5470077 Msa0531270:exon 10.0%
!!! TTTTTTTTTCATATGTTTTA+TGG - chr4_1:5471380-5471399 Msa0531270:intron 10.0%
!!! TTTTTTTTCATATGTTTTAT+GGG - chr4_1:5471381-5471400 Msa0531270:intron 10.0%
!! AATACAATTCATAGAAAAAT+GGG + chr4_1:5470004-5470023 None:intergenic 15.0%
!! AAATACAATTCATAGAAAAA+TGG + chr4_1:5470005-5470024 None:intergenic 15.0%
!! TCAATTTCTCAAATTAATAT+CGG - chr4_1:5470483-5470502 Msa0531270:CDS 15.0%
!! CATAGATATATTAATTAACT+AGG + chr4_1:5471119-5471138 None:intergenic 15.0%
!! TTTACTAAATATGATACATA+AGG - chr4_1:5471543-5471562 Msa0531270:intron 15.0%
!! TTACTAAATATGATACATAA+GGG - chr4_1:5471544-5471563 Msa0531270:intron 15.0%
!! ATAAGTTGTTTATCCAAATA+GGG - chr4_1:5470811-5470830 Msa0531270:intron 20.0%
!!! CCATTTTCTCAAATTATTAT+CGG - chr4_1:5471049-5471068 Msa0531270:intron 20.0%
!! ACATACTTTATGTACTAATT+AGG + chr4_1:5471208-5471227 None:intergenic 20.0%
!! TATTTAGTAAAATTACACCA+AGG + chr4_1:5471534-5471553 None:intergenic 20.0%
!! TACTAAATATGATACATAAG+GGG - chr4_1:5471545-5471564 Msa0531270:intron 20.0%
!! CAAAGATAGTAATATTACAT+AGG + chr4_1:5471648-5471667 None:intergenic 20.0%
!! TATAACTAAAATGTACTCAA+GGG + chr4_1:5472907-5472926 None:intergenic 20.0%
!! ATATAACTAAAATGTACTCA+AGG + chr4_1:5472908-5472927 None:intergenic 20.0%
!! ATCAAATTTATCTGTATTCT+CGG - chr4_1:5472932-5472951 Msa0531270:five_prime_UTR 20.0%
!! TCAAATTTGTGTCATTATTC+AGG - chr4_1:5469955-5469974 Msa0531270:three_prime_UTR 25.0%
!! GGATTTTGTAAAAACAATCA+TGG + chr4_1:5469983-5470002 None:intergenic 25.0%
! GATAAGTTGTTTATCCAAAT+AGG - chr4_1:5470810-5470829 Msa0531270:intron 25.0%
! CGAAAAATTGTCATATACTT+CGG + chr4_1:5470907-5470926 None:intergenic 25.0%
! CCGATAATAATTTGAGAAAA+TGG + chr4_1:5471052-5471071 None:intergenic 25.0%
! ATACTTGAGATTTACTTGAA+TGG + chr4_1:5471175-5471194 None:intergenic 25.0%
!! AGACGAATTTTCATATACTT+CGG + chr4_1:5471283-5471302 None:intergenic 25.0%
!!! GTTAGTTCTTAGGATTTTAA+CGG - chr4_1:5471304-5471323 Msa0531270:intron 25.0%
! AGTAATATTACATAGGAACT+TGG + chr4_1:5471641-5471660 None:intergenic 25.0%
!! CAATTTTCTCAATCTATTAG+TGG + chr4_1:5471823-5471842 None:intergenic 25.0%
!! CATCCTTGAAAAATTTGTTT+CGG - chr4_1:5472072-5472091 Msa0531270:intron 25.0%
! ATTATCAATCTTTCTGTGAT+AGG - chr4_1:5472106-5472125 Msa0531270:intron 25.0%
!!! TACCCTTTTTTTATGTCAAT+TGG - chr4_1:5472424-5472443 Msa0531270:intron 25.0%
! TGCCAATTGACATAAAAAAA+GGG + chr4_1:5472429-5472448 None:intergenic 25.0%
! TATATCCAAATACCATATGA+AGG - chr4_1:5472745-5472764 Msa0531270:intron 25.0%
! ATATCCAAATACCATATGAA+GGG - chr4_1:5472746-5472765 Msa0531270:intron 25.0%
! ACTTTAGAGATTAAACCAAG+AGG - chr4_1:5470211-5470230 Msa0531270:CDS 30.0%
GTATCTTAACATGTAACTAG+TGG - chr4_1:5470937-5470956 Msa0531270:intron 30.0%
GTATGGTGTTTGGTAAAAAA+TGG - chr4_1:5471508-5471527 Msa0531270:intron 30.0%
!!! TGTCACTTTTTAGACTTTTG+AGG - chr4_1:5471598-5471617 Msa0531270:intron 30.0%
!!! CGAAACAAATTTTTCAAGGA+TGG + chr4_1:5472074-5472093 None:intergenic 30.0%
! AAGCCGAAACAAATTTTTCA+AGG + chr4_1:5472078-5472097 None:intergenic 30.0%
CTGCCAATTGACATAAAAAA+AGG + chr4_1:5472430-5472449 None:intergenic 30.0%
GTAAAATTGGAATGCATTTC+TGG - chr4_1:5472623-5472642 Msa0531270:CDS 30.0%
CTATGGAAGTAAAGAGATAA+AGG + chr4_1:5472663-5472682 None:intergenic 30.0%
TACATATTTCACCCTTCATA+TGG + chr4_1:5472760-5472779 None:intergenic 30.0%
TATGAAGGGTGAAATATGTA+AGG - chr4_1:5472760-5472779 Msa0531270:intron 30.0%
CACGAGTAGCAAAAATATAA+AGG + chr4_1:5472795-5472814 None:intergenic 30.0%
! ATTGTTCTGTGAGTTTTCAG+AGG + chr4_1:5469936-5469955 None:intergenic 35.0%
ACTAGTGATTCAAGCATGAT+TGG - chr4_1:5470091-5470110 Msa0531270:CDS 35.0%
TCAAGCATGATTGGAAATGT+TGG - chr4_1:5470100-5470119 Msa0531270:CDS 35.0%
GTAACACAAAACAGAACCTT+GGG + chr4_1:5470134-5470153 None:intergenic 35.0%
TCTCAAGTTTCCGAAGTTTA+TGG - chr4_1:5470182-5470201 Msa0531270:CDS 35.0%
CTCAAGTTTCCGAAGTTTAT+GGG - chr4_1:5470183-5470202 Msa0531270:CDS 35.0%
TCAAGTTTCCGAAGTTTATG+GGG - chr4_1:5470184-5470203 Msa0531270:CDS 35.0%
AAGTATGTCCCCATAAACTT+CGG + chr4_1:5470195-5470214 None:intergenic 35.0%
! ACTTCTTCGATTTGAAGCAT+TGG + chr4_1:5470401-5470420 None:intergenic 35.0%
ATACTTGAGATTTACTCGCA+CGG + chr4_1:5470587-5470606 None:intergenic 35.0%
! TTGTGTGAGCTTCTTTTGAA+GGG - chr4_1:5470670-5470689 Msa0531270:CDS 35.0%
TTAGAGACTAAGTCCCTATT+TGG + chr4_1:5470827-5470846 None:intergenic 35.0%
! AATTCGTCTCGTTAGTTCTT+AGG - chr4_1:5471294-5471313 Msa0531270:intron 35.0%
!! GTTCTTAGGATTTTAACGGT+AGG - chr4_1:5471308-5471327 Msa0531270:intron 35.0%
TAGGCTAGGGATTAATATGA+TGG - chr4_1:5471327-5471346 Msa0531270:intron 35.0%
!! TTTTATGGGCTAAGTAAGTG+AGG - chr4_1:5471395-5471414 Msa0531270:intron 35.0%
ATATTCGAGGAACTAAATCG+AGG - chr4_1:5471423-5471442 Msa0531270:intron 35.0%
TATTCGAGGAACTAAATCGA+GGG - chr4_1:5471424-5471443 Msa0531270:intron 35.0%
! TTTTACCAAACACCATACAC+AGG + chr4_1:5471506-5471525 None:intergenic 35.0%
TGTTTGGTAAAAAATGGCCT+TGG - chr4_1:5471514-5471533 Msa0531270:intron 35.0%
AAGTCAAGCTCTCCTTAAAT+GGG - chr4_1:5471719-5471738 Msa0531270:intron 35.0%
CTGAAATCCATTCCCATTTA+AGG + chr4_1:5471734-5471753 None:intergenic 35.0%
AATCACTACCTATGAAGCAT+TGG - chr4_1:5471763-5471782 Msa0531270:intron 35.0%
ACTATGACAGATCAGATACT+GGG + chr4_1:5471954-5471973 None:intergenic 35.0%
CAATCTTTCTGTGATAGGAA+TGG - chr4_1:5472111-5472130 Msa0531270:intron 35.0%
!! CATCAAGCCTACTTTTAAGT+GGG - chr4_1:5472155-5472174 Msa0531270:intron 35.0%
!! ATCAAGCCTACTTTTAAGTG+GGG - chr4_1:5472156-5472175 Msa0531270:intron 35.0%
AACTCGAATGCCTCAATAAA+CGG + chr4_1:5472397-5472416 None:intergenic 35.0%
ACGTGAAATCTGAAGAAATG+AGG + chr4_1:5472523-5472542 None:intergenic 35.0%
TATCTCGATTAACATTCCGA+CGG + chr4_1:5472548-5472567 None:intergenic 35.0%
TTCACCCTTCATATGGTATT+TGG + chr4_1:5472753-5472772 None:intergenic 35.0%
AAGGGTGAAATATGTAAGGA+AGG - chr4_1:5472764-5472783 Msa0531270:intron 35.0%
TGTTAAGCAGAACCATAGAA+TGG - chr4_1:5472831-5472850 Msa0531270:intron 35.0%
! CAAACTGATTAGCCATTCTA+TGG + chr4_1:5472846-5472865 None:intergenic 35.0%
CTCAAGGGAAAATATCAAAG+AGG + chr4_1:5472892-5472911 None:intergenic 35.0%
AATGTTGGCACTATATCCCA+AGG - chr4_1:5470115-5470134 Msa0531270:CDS 40.0%
CGTAACACAAAACAGAACCT+TGG + chr4_1:5470135-5470154 None:intergenic 40.0%
! AAACCAAGAGGTATGTTGCT+TGG - chr4_1:5470223-5470242 Msa0531270:CDS 40.0%
! ACACCTTCGATCTGAAATGT+CGG + chr4_1:5470301-5470320 None:intergenic 40.0%
TTAACTACATGTGCCAGTGT+CGG + chr4_1:5470447-5470466 None:intergenic 40.0%
TATCACTCAGTCTCCTACTT+AGG - chr4_1:5470604-5470623 Msa0531270:CDS 40.0%
ATCACTCAGTCTCCTACTTA+GGG - chr4_1:5470605-5470624 Msa0531270:CDS 40.0%
ACTACAAAGAGACCCTAAGT+AGG + chr4_1:5470620-5470639 None:intergenic 40.0%
! GTTGTGTGAGCTTCTTTTGA+AGG - chr4_1:5470669-5470688 Msa0531270:CDS 40.0%
GTGGACTTCAGATAGATAGA+AGG - chr4_1:5470956-5470975 Msa0531270:intron 40.0%
!! TAGGATTTTAACGGTAGGCT+AGG - chr4_1:5471313-5471332 Msa0531270:intron 40.0%
!! AGGATTTTAACGGTAGGCTA+GGG - chr4_1:5471314-5471333 Msa0531270:intron 40.0%
CTAAATGTCATTGCAGAGCA+TGG + chr4_1:5471461-5471480 None:intergenic 40.0%
GACCATTGTTTACCTGTGTA+TGG - chr4_1:5471491-5471510 Msa0531270:intron 40.0%
CACCATACACAGGTAAACAA+TGG + chr4_1:5471496-5471515 None:intergenic 40.0%
GTTTACCTGTGTATGGTGTT+TGG - chr4_1:5471498-5471517 Msa0531270:intron 40.0%
! ATATGATACATAAGGGGCAC+TGG - chr4_1:5471551-5471570 Msa0531270:intron 40.0%
ATTATATATCCGTGCCTCTG+GGG + chr4_1:5471686-5471705 None:intergenic 40.0%
CATTATATATCCGTGCCTCT+GGG + chr4_1:5471687-5471706 None:intergenic 40.0%
ACATTATATATCCGTGCCTC+TGG + chr4_1:5471688-5471707 None:intergenic 40.0%
GAAGTCAAGCTCTCCTTAAA+TGG - chr4_1:5471718-5471737 Msa0531270:intron 40.0%
AAGCTCTCCTTAAATGGGAA+TGG - chr4_1:5471724-5471743 Msa0531270:intron 40.0%
TCTCTATGCCAATGCTTCAT+AGG + chr4_1:5471774-5471793 None:intergenic 40.0%
CTATAGCGAACTACATGCAT+CGG - chr4_1:5471853-5471872 Msa0531270:intron 40.0%
GACTATGACAGATCAGATAC+TGG + chr4_1:5471955-5471974 None:intergenic 40.0%
! ACTGTAGGAATTGTTGACTG+CGG - chr4_1:5472029-5472048 Msa0531270:intron 40.0%
TTGACTGCGGTGCTTATATT+TGG - chr4_1:5472042-5472061 Msa0531270:intron 40.0%
!! GCATCAAGCCTACTTTTAAG+TGG - chr4_1:5472154-5472173 Msa0531270:intron 40.0%
!! TCAAGCCTACTTTTAAGTGG+GGG - chr4_1:5472157-5472176 Msa0531270:intron 40.0%
TTTGACCCCCACTTAAAAGT+AGG + chr4_1:5472165-5472184 None:intergenic 40.0%
!! CATCTTGGTTTTCTGGTCAT+CGG + chr4_1:5472289-5472308 None:intergenic 40.0%
GATGGATAGGCAAGAGATAA+GGG + chr4_1:5472336-5472355 None:intergenic 40.0%
! TGATGGATAGGCAAGAGATA+AGG + chr4_1:5472337-5472356 None:intergenic 40.0%
TTATCTCTTGCCTATCCATC+AGG - chr4_1:5472336-5472355 Msa0531270:intron 40.0%
CAATCTTCACCCGTTTATTG+AGG - chr4_1:5472384-5472403 Msa0531270:intron 40.0%
ACTCGAATGCCTCAATAAAC+GGG + chr4_1:5472396-5472415 None:intergenic 40.0%
TATGCTATGAGAGACCATCT+AGG + chr4_1:5472457-5472476 None:intergenic 40.0%
TTGCGTATCTTACCATTGTG+AGG - chr4_1:5472485-5472504 Msa0531270:intron 40.0%
! CCATTCTTTTCTCCTCACAA+TGG + chr4_1:5472500-5472519 None:intergenic 40.0%
CCATTGTGAGGAGAAAAGAA+TGG - chr4_1:5472497-5472516 Msa0531270:intron 40.0%
! AGATAGCCTTGCAAGTTACA+GGG - chr4_1:5472563-5472582 Msa0531270:intron 40.0%
GGGTTCTATTGGGGTAAAAT+TGG - chr4_1:5472610-5472629 Msa0531270:intron 40.0%
TTACTTCCATAGAGTGCGTT+AGG - chr4_1:5472671-5472690 Msa0531270:CDS 40.0%
ATCCGCATACATACCAGTAA+GGG + chr4_1:5472701-5472720 None:intergenic 40.0%
TATCCGCATACATACCAGTA+AGG + chr4_1:5472702-5472721 None:intergenic 40.0%
ATGCTGCATCACAGACAAAA+GGG + chr4_1:5472726-5472745 None:intergenic 40.0%
TATGCTGCATCACAGACAAA+AGG + chr4_1:5472727-5472746 None:intergenic 40.0%
CTTGAGACAGAAACCTTAGC+AGG + chr4_1:5470169-5470188 None:intergenic 45.0%
CAACCAAGCAACATACCTCT+TGG + chr4_1:5470229-5470248 None:intergenic 45.0%
AGTGTCTGATGTCTGAGTGT+CGG - chr4_1:5470418-5470437 Msa0531270:CDS 45.0%
! ATCGGTGTTCATGTGAGTGT+TGG - chr4_1:5470501-5470520 Msa0531270:CDS 45.0%
CTCGCACGGTAAATCTAGTA+TGG + chr4_1:5470573-5470592 None:intergenic 45.0%
! AGATAGATAGAAGGCGTGTC+CGG - chr4_1:5470965-5470984 Msa0531270:intron 45.0%
!! GTCAGTGTAGTGTTGATGTC+CGG + chr4_1:5471001-5471020 None:intergenic 45.0%
! CGAAGTGTGAGTGTTGTGTT+TGG - chr4_1:5471076-5471095 Msa0531270:intron 45.0%
AAGTGAGGAAGCGATATTCG+AGG - chr4_1:5471410-5471429 Msa0531270:intron 45.0%
!! ATCGGTGTCTTCTGAAGTGT+CGG - chr4_1:5471871-5471890 Msa0531270:intron 45.0%
AGTCAGCTGATCAAAGTCGT+TGG + chr4_1:5472003-5472022 None:intergenic 45.0%
CGATGACCAGAAAACCAAGA+TGG - chr4_1:5472287-5472306 Msa0531270:intron 45.0%
TGACCAGAAAACCAAGATGG+TGG - chr4_1:5472290-5472309 Msa0531270:intron 45.0%
! TACATCCACACCTGATGGAT+AGG + chr4_1:5472349-5472368 None:intergenic 45.0%
TAGCATACATCCACACCTGA+TGG + chr4_1:5472354-5472373 None:intergenic 45.0%
CAATTGGCAGTCTACCTAGA+TGG - chr4_1:5472440-5472459 Msa0531270:intron 45.0%
TTCAGATTTCACGTTGCCGT+CGG - chr4_1:5472529-5472548 Msa0531270:intron 45.0%
! GAGATAGCCTTGCAAGTTAC+AGG - chr4_1:5472562-5472581 Msa0531270:intron 45.0%
TGCCCTTACTGGTATGTATG+CGG - chr4_1:5472696-5472715 Msa0531270:CDS 45.0%
CGCTTGTCAAATGCCTGCTA+AGG - chr4_1:5470153-5470172 Msa0531270:CDS 50.0%
! GCACCGACATTTCAGATCGA+AGG - chr4_1:5470295-5470314 Msa0531270:CDS 50.0%
TTCCTTAACCAATGCCCCAG+AGG - chr4_1:5471669-5471688 Msa0531270:intron 50.0%
CAGCTGACTGTAGTGACTGT+AGG - chr4_1:5472014-5472033 Msa0531270:intron 50.0%
! TTCGCTGCGCAAGTCTTGTA+GGG - chr4_1:5472216-5472235 Msa0531270:intron 50.0%
AGCCTTCCTTCATTGCTCGA+GGG + chr4_1:5472243-5472262 None:intergenic 50.0%
ATGAAGGAAGGCTCATCTGC+TGG - chr4_1:5472250-5472269 Msa0531270:intron 50.0%
!! CTTGGTTTTCTGGTCATCGG+AGG + chr4_1:5472286-5472305 None:intergenic 50.0%
!! CCACCACCATCTTGGTTTTC+TGG + chr4_1:5472296-5472315 None:intergenic 50.0%
! CCAGAAAACCAAGATGGTGG+TGG - chr4_1:5472293-5472312 Msa0531270:intron 50.0%
AGTGTTCTCCACCACCATCT+TGG + chr4_1:5472304-5472323 None:intergenic 50.0%
TCTTGCCTATCCATCAGGTG+TGG - chr4_1:5472341-5472360 Msa0531270:intron 50.0%
! CACAAGCCCTGTAACTTGCA+AGG + chr4_1:5472572-5472591 None:intergenic 50.0%
GATGCCACTGGGGTTCTATT+GGG - chr4_1:5472600-5472619 Msa0531270:intron 50.0%
ATGCCACTGGGGTTCTATTG+GGG - chr4_1:5472601-5472620 Msa0531270:intron 50.0%
TTACCCCAATAGAACCCCAG+TGG + chr4_1:5472607-5472626 None:intergenic 50.0%
!! TGCCTCTGGGGCATTGGTTA+AGG + chr4_1:5471674-5471693 None:intergenic 55.0%
TAACCAATGCCCCAGAGGCA+CGG - chr4_1:5471674-5471693 Msa0531270:intron 55.0%
TGCGCAGCGAAGGTAACACA+GGG + chr4_1:5472207-5472226 None:intergenic 55.0%
TTGCGCAGCGAAGGTAACAC+AGG + chr4_1:5472208-5472227 None:intergenic 55.0%
CTACAAGACTTGCGCAGCGA+AGG + chr4_1:5472217-5472236 None:intergenic 55.0%
! CTTCGCTGCGCAAGTCTTGT+AGG - chr4_1:5472215-5472234 Msa0531270:intron 55.0%
GCCTTCCTTCATTGCTCGAG+GGG + chr4_1:5472242-5472261 None:intergenic 55.0%
GAGCCTTCCTTCATTGCTCG+AGG + chr4_1:5472244-5472263 None:intergenic 55.0%
TTACAGGGCTTGTGAGCCGT+TGG - chr4_1:5472578-5472597 Msa0531270:intron 55.0%
AGAACCCCAGTGGCATCCAA+CGG + chr4_1:5472597-5472616 None:intergenic 55.0%
GGATGCCACTGGGGTTCTAT+TGG - chr4_1:5472599-5472618 Msa0531270:intron 55.0%
GGCACACCTAACGCACTCTA+TGG + chr4_1:5472680-5472699 None:intergenic 55.0%
TGCGTTAGGTGTGCCCTTAC+TGG - chr4_1:5472685-5472704 Msa0531270:CDS 55.0%
!! TGAGTGTCGGACACCGACAC+TGG - chr4_1:5470431-5470450 Msa0531270:CDS 60.0%
GATGTCCGGCACTCAGACAC+CGG + chr4_1:5470987-5471006 None:intergenic 60.0%
!! TATCCGTGCCTCTGGGGCAT+TGG + chr4_1:5471680-5471699 None:intergenic 60.0%
TAGGGCCCCTCGAGCAATGA+AGG - chr4_1:5472234-5472253 Msa0531270:intron 60.0%
GCCCCTCGAGCAATGAAGGA+AGG - chr4_1:5472238-5472257 Msa0531270:intron 60.0%
TGTGAGCCGTTGGATGCCAC+TGG - chr4_1:5472588-5472607 Msa0531270:intron 60.0%
GTGAGCCGTTGGATGCCACT+GGG - chr4_1:5472589-5472608 Msa0531270:intron 60.0%
TGAGCCGTTGGATGCCACTG+GGG - chr4_1:5472590-5472609 Msa0531270:intron 60.0%
CGTGTCCGGTGTCTGAGTGC+CGG - chr4_1:5470979-5470998 Msa0531270:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 5469893 5472955 5469893 ID=Msa0531270;Name=Msa0531270
chr4_1 mRNA 5469893 5472955 5469893 ID=Msa0531270-mRNA-1;Parent=Msa0531270;Name=Msa0531270-mRNA-1;_AED=0.35;_eAED=0.35;_QI=94|1|1|1|0.5|0.66|3|184|256
chr4_1 exon 5469893 5470720 5469893 ID=Msa0531270-mRNA-1:exon:1757;Parent=Msa0531270-mRNA-1
chr4_1 exon 5472616 5472752 5472616 ID=Msa0531270-mRNA-1:exon:1756;Parent=Msa0531270-mRNA-1
chr4_1 exon 5472872 5472955 5472872 ID=Msa0531270-mRNA-1:exon:1755;Parent=Msa0531270-mRNA-1
chr4_1 five_prime_UTR 5472872 5472955 5472872 ID=Msa0531270-mRNA-1:five_prime_utr;Parent=Msa0531270-mRNA-1
chr4_1 five_prime_UTR 5472743 5472752 5472743 ID=Msa0531270-mRNA-1:five_prime_utr;Parent=Msa0531270-mRNA-1
chr4_1 CDS 5472616 5472742 5472616 ID=Msa0531270-mRNA-1:cds;Parent=Msa0531270-mRNA-1
chr4_1 CDS 5470077 5470720 5470077 ID=Msa0531270-mRNA-1:cds;Parent=Msa0531270-mRNA-1
chr4_1 three_prime_UTR 5469893 5470076 5469893 ID=Msa0531270-mRNA-1:three_prime_utr;Parent=Msa0531270-mRNA-1
Gene Sequence

>Msa0531270

ATGATTGGAAATGTTGGCACTATATCCCAAGGTTCTGTTTTGTGTTACGCTTGTCAAATGCCTGCTAAGGTTTCTGTCTCAAGTTTCCGAAGTTTATGGGGACATACTTTAGAGATTAAACCAAGAGGAATGGCATACACAGACATGTCTTCTGCATCAAGCCTACTTTTAAGTGGGGGTCAAAATCTTCTATCTCGTACTATCCCTGTGTTACCTTCGCTGCGCAAGTCTTGTAGGGCCCCTCGAGCAATGAAGGAAGGCTCATCTGCTGGCTTTAAGTTTCCTCCGATGACCAGAAAACCAAGATGGTGGTGGAGAACACTAGCATGCATCCCTTATCTCTTGCCTATCCATCAGGTGTGGATGTATGCTAAGACAGCATACAATCTTCACCCGTTTATTGAGGCATTCGAGTTCTTAACGTACCCTTTTTTTATGTCAATTGGCAGTCTACCTAGATGGTCTCTCATAGCATACTTCTTGATTGCGTATCTTACCATTGTGAGGAGAAAAGAATGGCCTCATTTCTTCAGATTTCACGTTGCCGTCGGAATGTTAATCGAGATAGCCTTGCAAGTTACAGGGCTTGTGAGCCGTTGGATGCCACTGGGGTTCTATTGGGGTAAAATTGGAATGCATTTCTGGACTACTGCATTTTTCCTTTATCTCTTTACTTCCATAGAGTGCGTTAGGTGTGCCCTTACTGGTATGTATGCGGATATCCCTTTTGTCTGTGATGCAGCATATATCCAAATACCATATGAAGGGTGA

Protein sequence

>Msa0531270

MIGNVGTISQGSVLCYACQMPAKVSVSSFRSLWGHTLEIKPRGMAYTDMSSASSLLLSGGQNLLSRTIPVLPSLRKSCRAPRAMKEGSSAGFKFPPMTRKPRWWWRTLACIPYLLPIHQVWMYAKTAYNLHPFIEAFEFLTYPFFMSIGSLPRWSLIAYFLIAYLTIVRRKEWPHFFRFHVAVGMLIEIALQVTGLVSRWMPLGFYWGKIGMHFWTTAFFLYLFTSIECVRCALTGMYADIPFVCDAAYIQIPYEG*