AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0934800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934800 MtrunA17_Chr6g0450891 99.130 230 2 0 1 230 54 283 2.56e-168 474
Msa0934800 MtrunA17_Chr6g0450881 99.095 221 2 0 235 455 1 221 1.93e-160 452
Msa0934800 MtrunA17_Chr8g0359811 27.373 453 248 17 45 449 2 421 3.48e-32 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934800 AT3G01480.1 75.112 446 100 5 11 455 2 437 0.0 682
Msa0934800 AT3G01480.2 70.893 347 90 5 11 356 2 338 1.49e-176 498
Msa0934800 AT3G15520.3 29.083 447 262 18 33 449 35 456 3.14e-34 134
Msa0934800 AT3G15520.1 29.083 447 262 18 33 449 35 456 3.14e-34 134
Msa0934800 AT3G15520.2 29.042 334 199 9 136 449 1 316 1.62e-31 123
Msa0934800 AT3G15520.4 28.571 343 202 14 33 351 35 358 8.56e-22 97.1

Find 140 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGATAGTCTCAAGATTTC+TGG 0.168643 6_3:+4832873 Msa0934800:CDS
GAATCCATTCAAGTTGTTTC+TGG 0.214909 6_3:+4835466 Msa0934800:CDS
AAGACTCTTAGAGTGATTAT+TGG 0.226418 6_3:-4831662 None:intergenic
CTGGCTCTAGCCAAGTATTT+TGG 0.227149 6_3:+4835320 Msa0934800:CDS
TGTTTCTGGTTTGGATAATT+TGG 0.233188 6_3:+4835480 Msa0934800:CDS
AACAGAAAATGAAGATTTCT+TGG 0.254187 6_3:+4835417 Msa0934800:CDS
GACTATACCTTTAGAAATTA+TGG 0.255407 6_3:+4834820 Msa0934800:CDS
ACGAAATTGCCGGCAGTTAC+AGG 0.259328 6_3:-4834154 None:intergenic
ATTATTGGAGTGAAACAAAA+TGG 0.265742 6_3:-4831647 None:intergenic
AAACCCTCGGCAGGACCTTC+AGG 0.267172 6_3:-4834770 None:intergenic
AAGCTTCCGTTTAATGCATT+TGG 0.279608 6_3:+4835146 Msa0934800:CDS
GGTAAGACATTAATTATATC+AGG 0.285722 6_3:+4833218 Msa0934800:CDS
AATGCCCCAGGGTCCTTAAT+TGG 0.285824 6_3:-4832783 None:intergenic
GATATCTGGACCGCCAATTA+AGG 0.287928 6_3:+4832770 Msa0934800:CDS
AACACACATTCCTCTAAGTT+TGG 0.307872 6_3:-4834103 None:intergenic
CTCTTTCTCTCTACCTTCAA+TGG 0.317604 6_3:+4831576 Msa0934800:exon
CATTCAAGTTGTTTCTGGTT+TGG 0.322297 6_3:+4835471 Msa0934800:CDS
GTTCAACCTTCAATGGTTAC+TGG 0.323361 6_3:+4835589 Msa0934800:three_prime_UTR
TGAAGAAGTTCCTTCTGTTT+TGG 0.325346 6_3:-4833350 None:intergenic
GATCTGTCTGTATTGATATC+TGG 0.326137 6_3:+4832756 Msa0934800:CDS
TCTAGAGTTTCGCCATAAAA+AGG 0.332882 6_3:-4834860 None:intergenic
CTTTCAATAAAGGCAAATTT+CGG 0.340786 6_3:-4834039 None:intergenic
TCCAAGCAATGCCAACATAT+TGG 0.345818 6_3:+4835366 Msa0934800:CDS
TGGTCTTCCTATTGACAATA+AGG 0.348536 6_3:+4832815 Msa0934800:CDS
CTTTCAATAGCCAAAATACT+TGG 0.354242 6_3:-4835330 None:intergenic
ACAGACAGATCAGGTAAAAC+AGG 0.356384 6_3:-4832744 None:intergenic
AGATTTCTTGGCAGACCTTA+AGG 0.363446 6_3:+4835429 Msa0934800:CDS
TCCAATATGTTGGCATTGCT+TGG 0.366720 6_3:-4835367 None:intergenic
AATGATGGGTTGGTGGAGTT+TGG 0.372692 6_3:-4831750 None:intergenic
GACCTTCAGGGTCACCGGTT+TGG 0.377802 6_3:-4834757 None:intergenic
GCTGCTCTCCCTTTCAATAA+AGG 0.380271 6_3:-4834049 None:intergenic
CCTGGGGCATTGTTGAGATA+TGG 0.383495 6_3:+4832795 Msa0934800:CDS
AGCTACAAGATTGCTGGTTA+AGG 0.387705 6_3:+4835511 Msa0934800:CDS
TATTCCTCAGGCACTTCATA+TGG 0.401247 6_3:-4834016 None:intergenic
ATAGATAGATAGATAAGGTT+TGG 0.403559 6_3:-4831527 None:intergenic
GTGTTCCACATAGTTCTTGA+TGG 0.404241 6_3:+4834121 Msa0934800:CDS
CTTGCGGTCGGGTTAATAAC+AGG 0.406077 6_3:+4832678 Msa0934800:CDS
GTCTTGTTTGGACAGGAGCT+TGG 0.412150 6_3:+4835104 Msa0934800:intron
TAATGTCTTACCTTGCTTGA+GGG 0.412765 6_3:-4833207 None:intergenic
CGAAATTTGCCTTTATTGAA+AGG 0.414245 6_3:+4834040 Msa0934800:CDS
ATTGTTCCAAATGCATTAAA+CGG 0.417987 6_3:-4835152 None:intergenic
ACTTCTCCAGTAACCATTGA+AGG 0.419964 6_3:-4835595 None:intergenic
TACCAAGTCAACGAAATTGC+CGG 0.421378 6_3:-4834164 None:intergenic
CTATGACATCACCAACCTTA+AGG 0.424481 6_3:-4835444 None:intergenic
CTTAACTGAATGCTAGATTC+TGG 0.425387 6_3:-4835630 None:intergenic
CTAATCGCCTTATTGTCAAT+AGG 0.425706 6_3:-4832822 None:intergenic
CCCTCTACCATAATTTCTAA+AGG 0.426856 6_3:-4834827 None:intergenic
AGAGAAAGAGACAGTGGAAG+GGG 0.429284 6_3:-4831563 None:intergenic
GTTGAAGAAGACATGGTTGA+TGG 0.437254 6_3:+4833989 Msa0934800:CDS
AACCCCAGCTACAAGATTGC+TGG 0.439725 6_3:+4835505 Msa0934800:CDS
TTATTGGAGTGAAACAAAAT+GGG 0.440181 6_3:-4831646 None:intergenic
TTGAACTGATACTACAAGAT+AGG 0.441548 6_3:+4833309 Msa0934800:CDS
TAAAGACAATCCAAACTTAG+AGG 0.442062 6_3:+4834093 Msa0934800:CDS
AATTGAACTGCTTGATAAGC+TGG 0.446258 6_3:+4833268 Msa0934800:CDS
ATAACAGGAGTTCCTACGTT+GGG 0.448584 6_3:+4832693 Msa0934800:CDS
GAAATTTGCCTTTATTGAAA+GGG 0.449247 6_3:+4834041 Msa0934800:CDS
TATCTTTAGCACTTGCGGTC+GGG 0.451823 6_3:+4832667 Msa0934800:CDS
CAAACCAGAAACAACTTGAA+TGG 0.457875 6_3:-4835470 None:intergenic
TTAACCAGCAATCTTGTAGC+TGG 0.458375 6_3:-4835509 None:intergenic
ACGTGTAGTTCAACCTTCAA+TGG 0.461335 6_3:+4835582 Msa0934800:three_prime_UTR
TATGATCAAATTGAGAATGA+TGG 0.461499 6_3:-4831765 None:intergenic
AAGGAACTTCTTCAATATGT+TGG 0.462165 6_3:+4833359 Msa0934800:CDS
GGCAAATTTCGGTATTCCTC+AGG 0.467429 6_3:-4834028 None:intergenic
TATGTTTGAGTAGGAATTTG+AGG 0.468536 6_3:+4835291 Msa0934800:intron
ATATCTTTAGCACTTGCGGT+CGG 0.471409 6_3:+4832666 Msa0934800:CDS
GGCAGGACCTTCAGGGTCAC+CGG 0.474696 6_3:-4834762 None:intergenic
GACCGCCAATTAAGGACCCT+GGG 0.483051 6_3:+4832778 Msa0934800:CDS
GAGAGCAGCTGTAGATATGA+AGG 0.486022 6_3:+4834063 Msa0934800:CDS
ACCTTTAGAAATTATGGTAG+AGG 0.487023 6_3:+4834826 Msa0934800:CDS
CGAAATTGCCGGCAGTTACA+GGG 0.488614 6_3:-4834153 None:intergenic
AATCTAGCATTCAGTTAAGC+AGG 0.489975 6_3:+4835634 Msa0934800:three_prime_UTR
AGATCGGATCTATACCTCTC+TGG 0.494419 6_3:-4834216 None:intergenic
AACCCTCGGCAGGACCTTCA+GGG 0.495495 6_3:-4834769 None:intergenic
AATTATGGTAGAGGGAGAAA+AGG 0.496573 6_3:+4834835 Msa0934800:CDS
GACGGGTTTGTTGTCCAAAC+CGG 0.496648 6_3:+4834743 Msa0934800:CDS
TAACCAGCAATCTTGTAGCT+GGG 0.498970 6_3:-4835508 None:intergenic
TGCCGGCAATTTCGTTGACT+TGG 0.499568 6_3:+4834162 Msa0934800:CDS
AGAACATAGATAGATAGATA+AGG 0.507630 6_3:-4831532 None:intergenic
GAACTTCTTCAATATGTTGG+AGG 0.513243 6_3:+4833362 Msa0934800:CDS
AGAGAGAAAGAGACAGTGGA+AGG 0.514309 6_3:-4831565 None:intergenic
AGGTAGAGAGAAAGAGACAG+TGG 0.516982 6_3:-4831569 None:intergenic
GAGAGAAAGAGACAGTGGAA+GGG 0.517856 6_3:-4831564 None:intergenic
ATGATCAAATTGAGAATGAT+GGG 0.518395 6_3:-4831764 None:intergenic
GATATCAATACAGACAGATC+AGG 0.523570 6_3:-4832753 None:intergenic
TTCTTGGCAGACCTTAAGGT+TGG 0.524531 6_3:+4835433 Msa0934800:CDS
TTAATGTCTTACCTTGCTTG+AGG 0.526720 6_3:-4833208 None:intergenic
TCTACTAAATCCTCCAACAT+TGG 0.531126 6_3:-4831704 None:intergenic
GACCCTGAAGGTCCTGCCGA+GGG 0.531280 6_3:+4834767 Msa0934800:CDS
CCATATCTCAACAATGCCCC+AGG 0.533159 6_3:-4832795 None:intergenic
TGACCCTGAAGGTCCTGCCG+AGG 0.533538 6_3:+4834766 Msa0934800:CDS
GTGAGGAAATTGTTGTATGT+AGG 0.536542 6_3:+4835731 Msa0934800:three_prime_UTR
TGCGATATCTTTAGCACTTG+CGG 0.541234 6_3:+4832662 Msa0934800:CDS
GTTTAATGCATTTGGAACAA+TGG 0.545136 6_3:+4835154 Msa0934800:CDS
ACAATAGTGACGAGGAATGA+TGG 0.547534 6_3:-4831605 None:intergenic
CTGCAGTGTTGAAGAAGACA+TGG 0.547863 6_3:+4833982 Msa0934800:intron
ATGTAACAAACAACATTGGT+GGG 0.549748 6_3:-4831459 None:intergenic
CCTTTAGAAATTATGGTAGA+GGG 0.553718 6_3:+4834827 Msa0934800:CDS
AACTTCTTCAATATGTTGGA+GGG 0.560615 6_3:+4833363 Msa0934800:CDS
CGTGCGCAATATTTAATAGC+CGG 0.561542 6_3:-4835547 None:intergenic
GGACCGCCAATTAAGGACCC+TGG 0.563001 6_3:+4832777 Msa0934800:CDS
ATATCTACCATCCAATATGT+TGG 0.565448 6_3:-4835377 None:intergenic
AACCAGCAATCTTGTAGCTG+GGG 0.567223 6_3:-4835507 None:intergenic
TGGGTTGTAGAATGTGAGAC+AGG 0.567671 6_3:+4833175 Msa0934800:intron
TAGGAATTTGAGGACAACTC+TGG 0.570773 6_3:+4835301 Msa0934800:intron
GCCCCAGGGTCCTTAATTGG+CGG 0.573398 6_3:-4832780 None:intergenic
TCTCAAGATTTCTGGAGTCA+AGG 0.574299 6_3:+4832881 Msa0934800:CDS
TGCATTTGGAACAATGGCGA+TGG 0.578659 6_3:+4835160 Msa0934800:CDS
GATGTAACAAACAACATTGG+TGG 0.582228 6_3:-4831460 None:intergenic
CTGCTTGATAAGCTGGAAGC+TGG 0.592541 6_3:+4833275 Msa0934800:CDS
TATAATGCCCCTGTAACTGC+CGG 0.593137 6_3:+4834145 Msa0934800:CDS
TATTGGAGTGAAACAAAATG+GGG 0.593667 6_3:-4831645 None:intergenic
AATTGAGAATGATGGGTTGG+TGG 0.595058 6_3:-4831757 None:intergenic
GGATCAATAAAACCCTCGGC+AGG 0.596143 6_3:-4834779 None:intergenic
TAACAGGAGTTCCTACGTTG+GGG 0.601545 6_3:+4832694 Msa0934800:CDS
TGCCGTGGCACCAAAACAGA+AGG 0.603159 6_3:+4833340 Msa0934800:CDS
ATGATGGATGATGCCATTGA+AGG 0.605330 6_3:-4831589 None:intergenic
AGCAATGCCAACATATTGGA+TGG 0.605476 6_3:+4835370 Msa0934800:CDS
TTAGCTGCATGTGCATCGTT+AGG 0.611517 6_3:-4832720 None:intergenic
GTCCAAACCGGTGACCCTGA+AGG 0.613081 6_3:+4834755 Msa0934800:CDS
TCAAATTGAGAATGATGGGT+TGG 0.617762 6_3:-4831760 None:intergenic
GAGGATGTAACAAACAACAT+TGG 0.618775 6_3:-4831463 None:intergenic
CTATCAGTAATATCTTCAAG+TGG 0.619643 6_3:-4832858 None:intergenic
GCTGAATCAAAGAAAGAACA+TGG 0.621255 6_3:+4833245 Msa0934800:CDS
ACAGGAGCTTGGTCTATACA+AGG 0.622115 6_3:+4835115 Msa0934800:intron
TATAACCATCAAGAACTATG+TGG 0.626770 6_3:-4834126 None:intergenic
GCATCGCGAGCCCTCAAGCA+AGG 0.627145 6_3:+4833197 Msa0934800:CDS
ACTTGGATCAATAAAACCCT+CGG 0.629696 6_3:-4834783 None:intergenic
ATCCAAGTACAGAGAAAACA+AGG 0.632911 6_3:+4834798 Msa0934800:CDS
GAAATTGCCGGCAGTTACAG+GGG 0.636838 6_3:-4834152 None:intergenic
AGATAGGAATCGAGTTGCCG+TGG 0.646382 6_3:+4833325 Msa0934800:CDS
CAGACAGATCAGGTAAAACA+GGG 0.656873 6_3:-4832743 None:intergenic
TCGTTAGGCAACCCCAACGT+AGG 0.670788 6_3:-4832705 None:intergenic
ATTGGAGTGAAACAAAATGG+GGG 0.691057 6_3:-4831644 None:intergenic
AATAACAGGAGTTCCTACGT+TGG 0.693696 6_3:+4832692 Msa0934800:CDS
CATATCTCAACAATGCCCCA+GGG 0.697189 6_3:-4832794 None:intergenic
ATTTCCATATGAAGTGCCTG+AGG 0.702011 6_3:+4834012 Msa0934800:CDS
GATGGCATGGAGATCCAGAG+AGG 0.724095 6_3:+4834202 Msa0934800:CDS
AAGTTGGAACAATAGTGACG+AGG 0.736463 6_3:-4831613 None:intergenic
ACCGCCAATTAAGGACCCTG+GGG 0.741296 6_3:+4832779 Msa0934800:CDS
TTGAAGGTTGAACTACACGT+CGG 0.764042 6_3:-4835579 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATACTTAACTTTT+TGG - chr6_3:4835849-4835868 None:intergenic 10.0%
!!! ATTTGTTCTTTTTTAATGTA+TGG + chr6_3:4831808-4831827 Msa0934800:intron 15.0%
!!! ACTATCTTTTAGAATATATT+TGG + chr6_3:4834315-4834334 Msa0934800:intron 15.0%
!!! CTATCTTTTAGAATATATTT+GGG + chr6_3:4834316-4834335 Msa0934800:intron 15.0%
!! TTATTAAAGAAATAGCTTAT+AGG - chr6_3:4834390-4834409 None:intergenic 15.0%
!! TAAATTACATATTTCAGTAA+TGG - chr6_3:4834630-4834649 None:intergenic 15.0%
!! GAAATATGTAATTTAGTATA+TGG + chr6_3:4834635-4834654 Msa0934800:intron 15.0%
!!! AGATATATTATGTTTTTTCA+AGG + chr6_3:4835660-4835679 Msa0934800:three_prime_UTR 15.0%
!!! TATGTTTTGTTTTGTAAAAG+AGG - chr6_3:4831485-4831504 None:intergenic 20.0%
!! TGATTAAGATATGCTAAATA+AGG + chr6_3:4832198-4832217 Msa0934800:intron 20.0%
!! GATTAAGATATGCTAAATAA+GGG + chr6_3:4832199-4832218 Msa0934800:intron 20.0%
!! AGTAAAATTCATTAAATTCG+CGG - chr6_3:4832468-4832487 None:intergenic 20.0%
!!! AAGCTTATTGTGTTAAATTT+TGG + chr6_3:4832605-4832624 Msa0934800:intron 20.0%
!! AAACAAAGAAAAAAGAAACA+CGG - chr6_3:4833125-4833144 None:intergenic 20.0%
!!! CTTTATTTTTCTGAAGAAAT+AGG + chr6_3:4833470-4833489 Msa0934800:intron 20.0%
!!! TTCTAAAAGATAGTTGTAAA+AGG - chr6_3:4834309-4834328 None:intergenic 20.0%
!!! GTATATGGAATATCTAAAAT+AGG + chr6_3:4834650-4834669 Msa0934800:intron 20.0%
!! TTTCTTCTGATAATACAAAA+AGG - chr6_3:4835000-4835019 None:intergenic 20.0%
!! TATAAAAGGGAGTAAATTAA+GGG - chr6_3:4835273-4835292 None:intergenic 20.0%
!! ATATAAAAGGGAGTAAATTA+AGG - chr6_3:4835274-4835293 None:intergenic 20.0%
!! GTAAAAAAAAATTACACTGA+TGG - chr6_3:4835802-4835821 None:intergenic 20.0%
!! TAAGAAAAACTACATTGATA+GGG - chr6_3:4835878-4835897 None:intergenic 20.0%
!!! TAAGGTTTGGTTTTTTAACA+AGG - chr6_3:4831517-4831536 None:intergenic 25.0%
! ATAGATAGATAGATAAGGTT+TGG - chr6_3:4831530-4831549 None:intergenic 25.0%
! AGAACATAGATAGATAGATA+AGG - chr6_3:4831535-4831554 None:intergenic 25.0%
! TTATTGGAGTGAAACAAAAT+GGG - chr6_3:4831649-4831668 None:intergenic 25.0%
! ATTATTGGAGTGAAACAAAA+TGG - chr6_3:4831650-4831669 None:intergenic 25.0%
! ATGATCAAATTGAGAATGAT+GGG - chr6_3:4831767-4831786 None:intergenic 25.0%
! TATGATCAAATTGAGAATGA+TGG - chr6_3:4831768-4831787 None:intergenic 25.0%
!!! AATGTATGGTGTTGTTTTTT+TGG + chr6_3:4831822-4831841 Msa0934800:intron 25.0%
! TTACAATGCTTTCAAATCTA+GGG - chr6_3:4832014-4832033 None:intergenic 25.0%
! TACATGGGAAATGTTTATTA+CGG - chr6_3:4833086-4833105 None:intergenic 25.0%
! AGATTATATGCAATGTACAT+GGG - chr6_3:4833101-4833120 None:intergenic 25.0%
! AAGATTATATGCAATGTACA+TGG - chr6_3:4833102-4833121 None:intergenic 25.0%
! GGTAAGACATTAATTATATC+AGG + chr6_3:4833218-4833237 Msa0934800:CDS 25.0%
! ATTGATTAAACGTGATTACT+AGG - chr6_3:4833758-4833777 None:intergenic 25.0%
!! TCAAAATGAGTGTTTTTCAT+CGG - chr6_3:4833784-4833803 None:intergenic 25.0%
!!! TTTGATACATGATTTGTTTG+TGG + chr6_3:4833799-4833818 Msa0934800:intron 25.0%
! CTTTCAATAAAGGCAAATTT+CGG - chr6_3:4834042-4834061 None:intergenic 25.0%
! GAAATTTGCCTTTATTGAAA+GGG + chr6_3:4834041-4834060 Msa0934800:CDS 25.0%
! AATAAATGTCCACTAAAGAT+CGG - chr6_3:4834235-4834254 None:intergenic 25.0%
!!! ATGTCATAAGTTGTTTCTAT+AGG + chr6_3:4834510-4834529 Msa0934800:intron 25.0%
!!! AAATGAAGTATTGATGATCT+AGG - chr6_3:4834578-4834597 None:intergenic 25.0%
! AAAACAAAACATGACTATCT+TGG - chr6_3:4834698-4834717 None:intergenic 25.0%
!! GACTATACCTTTAGAAATTA+TGG + chr6_3:4834820-4834839 Msa0934800:CDS 25.0%
! ATATAAGTCTACAAGTCATA+GGG - chr6_3:4834918-4834937 None:intergenic 25.0%
! ATTGTTCCAAATGCATTAAA+CGG - chr6_3:4835155-4835174 None:intergenic 25.0%
! TCCTACTCAAACATATAAAA+GGG - chr6_3:4835286-4835305 None:intergenic 25.0%
! TTCCTACTCAAACATATAAA+AGG - chr6_3:4835287-4835306 None:intergenic 25.0%
! AACAGAAAATGAAGATTTCT+TGG + chr6_3:4835417-4835436 Msa0934800:CDS 25.0%
!! TTAAGGATCTTTATGTTTTC+CGG + chr6_3:4835528-4835547 Msa0934800:exon 25.0%
! GTAAGAAAAACTACATTGAT+AGG - chr6_3:4835879-4835898 None:intergenic 25.0%
!!! TGGTTTTTTAACAAGGTTTG+AGG - chr6_3:4831510-4831529 None:intergenic 30.0%
TATTGGAGTGAAACAAAATG+GGG - chr6_3:4831648-4831667 None:intergenic 30.0%
AAGACTCTTAGAGTGATTAT+TGG - chr6_3:4831665-4831684 None:intergenic 30.0%
CCAACATTGGTATTCAAAAA+TGG - chr6_3:4831694-4831713 None:intergenic 30.0%
!! CCATTTTTGAATACCAATGT+TGG + chr6_3:4831691-4831710 Msa0934800:CDS 30.0%
! TTTTTGAATACCAATGTTGG+AGG + chr6_3:4831694-4831713 Msa0934800:CDS 30.0%
CTTACAATGCTTTCAAATCT+AGG - chr6_3:4832015-4832034 None:intergenic 30.0%
ACTTGTATTGAGATTTGAGA+CGG - chr6_3:4832056-4832075 None:intergenic 30.0%
! CACCTATTAATTCTAGTTAG+TGG + chr6_3:4832164-4832183 Msa0934800:intron 30.0%
CACCACTAACTAGAATTAAT+AGG - chr6_3:4832169-4832188 None:intergenic 30.0%
!! TAAGTTGTTTGTTGTCCATA+AGG + chr6_3:4832351-4832370 Msa0934800:intron 30.0%
! GACTTTGTAACTTTAAGAGA+CGG + chr6_3:4832402-4832421 Msa0934800:intron 30.0%
AGACGGAGTTAAAATATACT+CGG + chr6_3:4832419-4832438 Msa0934800:intron 30.0%
ACTCGGAAATAGTTGTAAAA+TGG + chr6_3:4832436-4832455 Msa0934800:intron 30.0%
GTGACTTGAATCATACATAA+AGG - chr6_3:4832584-4832603 None:intergenic 30.0%
!! TGTTAAATTTTGGTGCAGAA+AGG + chr6_3:4832615-4832634 Msa0934800:intron 30.0%
CTATCAGTAATATCTTCAAG+TGG - chr6_3:4832861-4832880 None:intergenic 30.0%
AGTTTGACCTATTAATCTCA+AGG + chr6_3:4833011-4833030 Msa0934800:intron 30.0%
GTTTGACCTATTAATCTCAA+GGG + chr6_3:4833012-4833031 Msa0934800:intron 30.0%
! AGAAACTGAGTATTTTACGT+TGG + chr6_3:4833155-4833174 Msa0934800:intron 30.0%
! GAAACTGAGTATTTTACGTT+GGG + chr6_3:4833156-4833175 Msa0934800:intron 30.0%
TTGAACTGATACTACAAGAT+AGG + chr6_3:4833309-4833328 Msa0934800:CDS 30.0%
AAGGAACTTCTTCAATATGT+TGG + chr6_3:4833359-4833378 Msa0934800:CDS 30.0%
AACTTCTTCAATATGTTGGA+GGG + chr6_3:4833363-4833382 Msa0934800:CDS 30.0%
!! TTTTCTGAAGAAATAGGAGA+CGG + chr6_3:4833476-4833495 Msa0934800:intron 30.0%
AGATGTTTAGTCAAGGTTTA+AGG - chr6_3:4833590-4833609 None:intergenic 30.0%
! AAGTCTGACATTGAGATTTT+AGG - chr6_3:4833727-4833746 None:intergenic 30.0%
CGAAATTTGCCTTTATTGAA+AGG + chr6_3:4834040-4834059 Msa0934800:CDS 30.0%
TAAAGACAATCCAAACTTAG+AGG + chr6_3:4834093-4834112 Msa0934800:CDS 30.0%
TATAACCATCAAGAACTATG+TGG - chr6_3:4834129-4834148 None:intergenic 30.0%
! GTAGAAAGACACTTTTATGA+TGG + chr6_3:4834184-4834203 Msa0934800:CDS 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr6_3:4834485-4834504 Msa0934800:intron 30.0%
TCATTTGTATGTGATTGAAG+CGG + chr6_3:4834592-4834611 Msa0934800:intron 30.0%
!!! TTCATCTTTTTTTTGTGCAG+CGG + chr6_3:4834721-4834740 Msa0934800:intron 30.0%
! ACCTTTAGAAATTATGGTAG+AGG + chr6_3:4834826-4834845 Msa0934800:CDS 30.0%
! CCTTTAGAAATTATGGTAGA+GGG + chr6_3:4834827-4834846 Msa0934800:CDS 30.0%
GAGGTAATACATATATACCA+TGG + chr6_3:4834881-4834900 Msa0934800:intron 30.0%
GATATAAGTCTACAAGTCAT+AGG - chr6_3:4834919-4834938 None:intergenic 30.0%
TCTGATAATACAAAAAGGTG+CGG - chr6_3:4834995-4835014 None:intergenic 30.0%
! GTTTAATGCATTTGGAACAA+TGG + chr6_3:4835154-4835173 Msa0934800:CDS 30.0%
TAAGAGTCTATTCTTTGACA+TGG + chr6_3:4835192-4835211 Msa0934800:intron 30.0%
! TCCCTTTTATATGTTTGAGT+AGG + chr6_3:4835282-4835301 Msa0934800:intron 30.0%
TATGTTTGAGTAGGAATTTG+AGG + chr6_3:4835291-4835310 Msa0934800:intron 30.0%
CTTTCAATAGCCAAAATACT+TGG - chr6_3:4835333-4835352 None:intergenic 30.0%
ATATCTACCATCCAATATGT+TGG - chr6_3:4835380-4835399 None:intergenic 30.0%
!! TGTTTCTGGTTTGGATAATT+TGG + chr6_3:4835480-4835499 Msa0934800:CDS 30.0%
GAGGATGTAACAAACAACAT+TGG - chr6_3:4831466-4831485 None:intergenic 35.0%
ATTGGAGTGAAACAAAATGG+GGG - chr6_3:4831647-4831666 None:intergenic 35.0%
TCTACTAAATCCTCCAACAT+TGG - chr6_3:4831707-4831726 None:intergenic 35.0%
!! TCAAATTGAGAATGATGGGT+TGG - chr6_3:4831763-4831782 None:intergenic 35.0%
GCTTTCAAATCTAGGGATAA+AGG - chr6_3:4832007-4832026 None:intergenic 35.0%
!! TTCTAGTTAGTGGTGTTGTT+AGG + chr6_3:4832174-4832193 Msa0934800:intron 35.0%
! GCTAAATAAGGGTGTATTAG+CGG + chr6_3:4832210-4832229 Msa0934800:intron 35.0%
! CTAAATAAGGGTGTATTAGC+GGG + chr6_3:4832211-4832230 Msa0934800:intron 35.0%
TGAGTTAAGCTAACACCTTA+TGG - chr6_3:4832369-4832388 None:intergenic 35.0%
! AAGGTGTTAGCTTAACTCAT+AGG + chr6_3:4832370-4832389 Msa0934800:intron 35.0%
GATATCAATACAGACAGATC+AGG - chr6_3:4832756-4832775 None:intergenic 35.0%
! GATCTGTCTGTATTGATATC+TGG + chr6_3:4832756-4832775 Msa0934800:CDS 35.0%
TGGTCTTCCTATTGACAATA+AGG + chr6_3:4832815-4832834 Msa0934800:CDS 35.0%
! CTAATCGCCTTATTGTCAAT+AGG - chr6_3:4832825-4832844 None:intergenic 35.0%
ACTGATAGTCTCAAGATTTC+TGG + chr6_3:4832873-4832892 Msa0934800:CDS 35.0%
ACTTGTCCCTTGAGATTAAT+AGG - chr6_3:4833021-4833040 None:intergenic 35.0%
! GTTTTACAACTGTCTCTGAA+GGG - chr6_3:4833050-4833069 None:intergenic 35.0%
TAATGTCTTACCTTGCTTGA+GGG - chr6_3:4833210-4833229 None:intergenic 35.0%
TTAATGTCTTACCTTGCTTG+AGG - chr6_3:4833211-4833230 None:intergenic 35.0%
GCTGAATCAAAGAAAGAACA+TGG + chr6_3:4833245-4833264 Msa0934800:CDS 35.0%
AATTGAACTGCTTGATAAGC+TGG + chr6_3:4833268-4833287 Msa0934800:CDS 35.0%
! TGAAGAAGTTCCTTCTGTTT+TGG - chr6_3:4833353-4833372 None:intergenic 35.0%
GAACTTCTTCAATATGTTGG+AGG + chr6_3:4833362-4833381 Msa0934800:CDS 35.0%
GGTATTTATGCGATTTATGC+AGG - chr6_3:4833412-4833431 None:intergenic 35.0%
TGTTCTCAGTGAGAATAAGA+AGG + chr6_3:4833447-4833466 Msa0934800:intron 35.0%
! TTTCTGAAGAAATAGGAGAC+GGG + chr6_3:4833477-4833496 Msa0934800:intron 35.0%
AGCATTAGTGCAAACCTATT+AGG + chr6_3:4833558-4833577 Msa0934800:intron 35.0%
TTAGTCAAGGTTTAAGGACT+TGG - chr6_3:4833584-4833603 None:intergenic 35.0%
ACTAGGTAGATGTTTAGTCA+AGG - chr6_3:4833597-4833616 None:intergenic 35.0%
TAAACATCTACCTAGTCAAC+AGG + chr6_3:4833601-4833620 Msa0934800:intron 35.0%
!! ATTGAGATTTTAGGTGCAGT+TGG - chr6_3:4833718-4833737 None:intergenic 35.0%
!! CATGATTTGTTTGTGGTATC+TGG + chr6_3:4833806-4833825 Msa0934800:intron 35.0%
AATCTTCCATTGTTAGAAGG+AGG - chr6_3:4833866-4833885 None:intergenic 35.0%
CTCAATCTTCCATTGTTAGA+AGG - chr6_3:4833869-4833888 None:intergenic 35.0%
CTTCTAACAATGGAAGATTG+AGG + chr6_3:4833867-4833886 Msa0934800:intron 35.0%
AACACACATTCCTCTAAGTT+TGG - chr6_3:4834106-4834125 None:intergenic 35.0%
! AAGACACTTTTATGATGGCA+TGG + chr6_3:4834189-4834208 Msa0934800:CDS 35.0%
!!! CTTTTGATTTCCCTTGTAGT+TGG + chr6_3:4834262-4834281 Msa0934800:intron 35.0%
AGCGCTAGTTAAGCTATTTA+TGG - chr6_3:4834350-4834369 None:intergenic 35.0%
! GCTGATTTCGTTATCTATCT+TGG + chr6_3:4834450-4834469 Msa0934800:intron 35.0%
TATCTATCTTGGAGAGCTTA+TGG + chr6_3:4834461-4834480 Msa0934800:intron 35.0%
! TTGATGATCTAGGATCTGTT+TGG - chr6_3:4834568-4834587 None:intergenic 35.0%
ACTTGGATCAATAAAACCCT+CGG - chr6_3:4834786-4834805 None:intergenic 35.0%
ATCCAAGTACAGAGAAAACA+AGG + chr6_3:4834798-4834817 Msa0934800:CDS 35.0%
CCCTCTACCATAATTTCTAA+AGG - chr6_3:4834830-4834849 None:intergenic 35.0%
AATTATGGTAGAGGGAGAAA+AGG + chr6_3:4834835-4834854 Msa0934800:CDS 35.0%
! TCTAGAGTTTCGCCATAAAA+AGG - chr6_3:4834863-4834882 None:intergenic 35.0%
! TTTTTATGGCGAAACTCTAG+AGG + chr6_3:4834862-4834881 Msa0934800:CDS 35.0%
AAGCTTCCGTTTAATGCATT+TGG + chr6_3:4835146-4835165 Msa0934800:CDS 35.0%
! GATGGTAGATATGCAGTTTT+TGG + chr6_3:4835388-4835407 Msa0934800:CDS 35.0%
!! GAATCCATTCAAGTTGTTTC+TGG + chr6_3:4835466-4835485 Msa0934800:CDS 35.0%
CAAACCAGAAACAACTTGAA+TGG - chr6_3:4835473-4835492 None:intergenic 35.0%
!! CATTCAAGTTGTTTCTGGTT+TGG + chr6_3:4835471-4835490 Msa0934800:CDS 35.0%
CTTAACTGAATGCTAGATTC+TGG - chr6_3:4835633-4835652 None:intergenic 35.0%
AATCTAGCATTCAGTTAAGC+AGG + chr6_3:4835634-4835653 Msa0934800:three_prime_UTR 35.0%
! GAAATTGTGACTGTTTTGTG+AGG + chr6_3:4835714-4835733 Msa0934800:three_prime_UTR 35.0%
GTGAGGAAATTGTTGTATGT+AGG + chr6_3:4835731-4835750 Msa0934800:three_prime_UTR 35.0%
CTCTTTCTCTCTACCTTCAA+TGG + chr6_3:4831576-4831595 Msa0934800:exon 40.0%
!! ATGATGGATGATGCCATTGA+AGG - chr6_3:4831592-4831611 None:intergenic 40.0%
ACAATAGTGACGAGGAATGA+TGG - chr6_3:4831608-4831627 None:intergenic 40.0%
AAGTTGGAACAATAGTGACG+AGG - chr6_3:4831616-4831635 None:intergenic 40.0%
!! AATTGAGAATGATGGGTTGG+TGG - chr6_3:4831760-4831779 None:intergenic 40.0%
TGCGATATCTTTAGCACTTG+CGG + chr6_3:4832662-4832681 Msa0934800:CDS 40.0%
ATATCTTTAGCACTTGCGGT+CGG + chr6_3:4832666-4832685 Msa0934800:CDS 40.0%
AATAACAGGAGTTCCTACGT+TGG + chr6_3:4832692-4832711 Msa0934800:CDS 40.0%
ATAACAGGAGTTCCTACGTT+GGG + chr6_3:4832693-4832712 Msa0934800:CDS 40.0%
CAGACAGATCAGGTAAAACA+GGG - chr6_3:4832746-4832765 None:intergenic 40.0%
ACAGACAGATCAGGTAAAAC+AGG - chr6_3:4832747-4832766 None:intergenic 40.0%
!! TCTCAAGATTTCTGGAGTCA+AGG + chr6_3:4832881-4832900 Msa0934800:CDS 40.0%
! CGTTTTACAACTGTCTCTGA+AGG - chr6_3:4833051-4833070 None:intergenic 40.0%
AGAACATCGATGGAAGGATA+GGG - chr6_3:4833433-4833452 None:intergenic 40.0%
ATTCTCACTGAGAACATCGA+TGG - chr6_3:4833443-4833462 None:intergenic 40.0%
GTTTAAGGACTTGGCCTAAT+AGG - chr6_3:4833575-4833594 None:intergenic 40.0%
CAACTAGTGATCCAGTGATT+CGG - chr6_3:4833676-4833695 None:intergenic 40.0%
!!! AGGAGGATCGTTGTTTTTGT+CGG - chr6_3:4833849-4833868 None:intergenic 40.0%
AACGATCCTCCTTCTAACAA+TGG + chr6_3:4833857-4833876 Msa0934800:intron 40.0%
CTAACAATGGAAGATTGAGG+AGG + chr6_3:4833870-4833889 Msa0934800:intron 40.0%
GTTGAAGAAGACATGGTTGA+TGG + chr6_3:4833989-4834008 Msa0934800:CDS 40.0%
! ATTTCCATATGAAGTGCCTG+AGG + chr6_3:4834012-4834031 Msa0934800:CDS 40.0%
TATTCCTCAGGCACTTCATA+TGG - chr6_3:4834019-4834038 None:intergenic 40.0%
GTGTTCCACATAGTTCTTGA+TGG + chr6_3:4834121-4834140 Msa0934800:CDS 40.0%
TACCAAGTCAACGAAATTGC+CGG - chr6_3:4834167-4834186 None:intergenic 40.0%
GGTATAGATCCGATCTTTAG+TGG + chr6_3:4834223-4834242 Msa0934800:intron 40.0%
GATTTCCCTTGTAGTTGGTT+TGG + chr6_3:4834267-4834286 Msa0934800:intron 40.0%
CTTCACCAAACCAACTACAA+GGG - chr6_3:4834275-4834294 None:intergenic 40.0%
TCTTCACCAAACCAACTACA+AGG - chr6_3:4834276-4834295 None:intergenic 40.0%
ACTTCTGTGAGCTTATCTAC+TGG - chr6_3:4834541-4834560 None:intergenic 40.0%
!!! TCTTTTTTTTGTGCAGCGGA+CGG + chr6_3:4834725-4834744 Msa0934800:intron 40.0%
!!! GTCCTTGTTTTCTCTGTACT+TGG - chr6_3:4834803-4834822 None:intergenic 40.0%
!!! GGAGAAAAGGCACCTTTTTA+TGG + chr6_3:4834848-4834867 Msa0934800:CDS 40.0%
ATAGGGTTATGTGATCTCCA+TGG - chr6_3:4834901-4834920 None:intergenic 40.0%
! CAAAAAGGTGCGGAAAAGAT+TGG - chr6_3:4834985-4835004 None:intergenic 40.0%
! TTTGAACCCTCTGTCTTGTT+TGG + chr6_3:4835092-4835111 Msa0934800:intron 40.0%
TAGGAATTTGAGGACAACTC+TGG + chr6_3:4835301-4835320 Msa0934800:intron 40.0%
TCCAAGCAATGCCAACATAT+TGG + chr6_3:4835366-4835385 Msa0934800:CDS 40.0%
TCCAATATGTTGGCATTGCT+TGG - chr6_3:4835370-4835389 None:intergenic 40.0%
AGCAATGCCAACATATTGGA+TGG + chr6_3:4835370-4835389 Msa0934800:CDS 40.0%
AGATTTCTTGGCAGACCTTA+AGG + chr6_3:4835429-4835448 Msa0934800:CDS 40.0%
CTATGACATCACCAACCTTA+AGG - chr6_3:4835447-4835466 None:intergenic 40.0%
TAACCAGCAATCTTGTAGCT+GGG - chr6_3:4835511-4835530 None:intergenic 40.0%
TTAACCAGCAATCTTGTAGC+TGG - chr6_3:4835512-4835531 None:intergenic 40.0%
! AGCTACAAGATTGCTGGTTA+AGG + chr6_3:4835511-4835530 Msa0934800:CDS 40.0%
CGTGCGCAATATTTAATAGC+CGG - chr6_3:4835550-4835569 None:intergenic 40.0%
TTGAAGGTTGAACTACACGT+CGG - chr6_3:4835582-4835601 None:intergenic 40.0%
ACGTGTAGTTCAACCTTCAA+TGG + chr6_3:4835582-4835601 Msa0934800:three_prime_UTR 40.0%
GTTCAACCTTCAATGGTTAC+TGG + chr6_3:4835589-4835608 Msa0934800:three_prime_UTR 40.0%
ACTTCTCCAGTAACCATTGA+AGG - chr6_3:4835598-4835617 None:intergenic 40.0%
AGAGAAAGAGACAGTGGAAG+GGG - chr6_3:4831566-4831585 None:intergenic 45.0%
GAGAGAAAGAGACAGTGGAA+GGG - chr6_3:4831567-4831586 None:intergenic 45.0%
AGAGAGAAAGAGACAGTGGA+AGG - chr6_3:4831568-4831587 None:intergenic 45.0%
AGGTAGAGAGAAAGAGACAG+TGG - chr6_3:4831572-4831591 None:intergenic 45.0%
AATGGGGGTAGTTGCAAAGT+TGG - chr6_3:4831632-4831651 None:intergenic 45.0%
!! AATGATGGGTTGGTGGAGTT+TGG - chr6_3:4831753-4831772 None:intergenic 45.0%
TATCTTTAGCACTTGCGGTC+GGG + chr6_3:4832667-4832686 Msa0934800:CDS 45.0%
TAACAGGAGTTCCTACGTTG+GGG + chr6_3:4832694-4832713 Msa0934800:CDS 45.0%
TTAGCTGCATGTGCATCGTT+AGG - chr6_3:4832723-4832742 None:intergenic 45.0%
GATATCTGGACCGCCAATTA+AGG + chr6_3:4832770-4832789 Msa0934800:CDS 45.0%
CATATCTCAACAATGCCCCA+GGG - chr6_3:4832797-4832816 None:intergenic 45.0%
TGGGTTGTAGAATGTGAGAC+AGG + chr6_3:4833175-4833194 Msa0934800:intron 45.0%
!!! TTCCTTCTGTTTTGGTGCCA+CGG - chr6_3:4833345-4833364 None:intergenic 45.0%
GAGAACATCGATGGAAGGAT+AGG - chr6_3:4833434-4833453 None:intergenic 45.0%
TCACTGAGAACATCGATGGA+AGG - chr6_3:4833439-4833458 None:intergenic 45.0%
ATCTACCTAGTCAACAGGCT+AGG + chr6_3:4833606-4833625 Msa0934800:intron 45.0%
CGTTGAGTGATCCAGTGATT+CGG - chr6_3:4833639-4833658 None:intergenic 45.0%
CGAATCACTGGATCACTCAA+CGG + chr6_3:4833637-4833656 Msa0934800:intron 45.0%
GAATCACTGGATCACTCAAC+GGG + chr6_3:4833638-4833657 Msa0934800:intron 45.0%
TATGCTATTGGCCGAATCAC+TGG + chr6_3:4833662-4833681 Msa0934800:intron 45.0%
ATGGAAGATTGAGGAGGACT+TGG + chr6_3:4833876-4833895 Msa0934800:intron 45.0%
TCTCAGCTGCAGTCAATGAA+AGG - chr6_3:4833941-4833960 None:intergenic 45.0%
! CTGCAGTGTTGAAGAAGACA+TGG + chr6_3:4833982-4834001 Msa0934800:intron 45.0%
GGCAAATTTCGGTATTCCTC+AGG - chr6_3:4834031-4834050 None:intergenic 45.0%
GCTGCTCTCCCTTTCAATAA+AGG - chr6_3:4834052-4834071 None:intergenic 45.0%
GAGAGCAGCTGTAGATATGA+AGG + chr6_3:4834063-4834082 Msa0934800:CDS 45.0%
TATAATGCCCCTGTAACTGC+CGG + chr6_3:4834145-4834164 Msa0934800:CDS 45.0%
AGATCGGATCTATACCTCTC+TGG - chr6_3:4834219-4834238 None:intergenic 45.0%
!!! CTTTTTTTTGTGCAGCGGAC+GGG + chr6_3:4834726-4834745 Msa0934800:intron 45.0%
TCCTGTCCAAACAAGACAGA+GGG - chr6_3:4835101-4835120 None:intergenic 45.0%
ACAGGAGCTTGGTCTATACA+AGG + chr6_3:4835115-4835134 Msa0934800:intron 45.0%
! TGCATTTGGAACAATGGCGA+TGG + chr6_3:4835160-4835179 Msa0934800:CDS 45.0%
!!! CTGGCTCTAGCCAAGTATTT+TGG + chr6_3:4835320-4835339 Msa0934800:CDS 45.0%
TTCTTGGCAGACCTTAAGGT+TGG + chr6_3:4835433-4835452 Msa0934800:CDS 45.0%
AACCAGCAATCTTGTAGCTG+GGG - chr6_3:4835510-4835529 None:intergenic 45.0%
CTTGCGGTCGGGTTAATAAC+AGG + chr6_3:4832678-4832697 Msa0934800:CDS 50.0%
AATGCCCCAGGGTCCTTAAT+TGG - chr6_3:4832786-4832805 None:intergenic 50.0%
CCATATCTCAACAATGCCCC+AGG - chr6_3:4832798-4832817 None:intergenic 50.0%
!! CCTGGGGCATTGTTGAGATA+TGG + chr6_3:4832795-4832814 Msa0934800:CDS 50.0%
ACGCACTACGCAGTAAGCAT+AGG - chr6_3:4832965-4832984 None:intergenic 50.0%
CTGCTTGATAAGCTGGAAGC+TGG + chr6_3:4833275-4833294 Msa0934800:CDS 50.0%
! AGATAGGAATCGAGTTGCCG+TGG + chr6_3:4833325-4833344 Msa0934800:CDS 50.0%
! AGTAGCCTAGCCTGTTGACT+AGG - chr6_3:4833614-4833633 None:intergenic 50.0%
TAGTCAACAGGCTAGGCTAC+TGG + chr6_3:4833613-4833632 Msa0934800:intron 50.0%
!! CACTCAACGGGCTATGCTAT+TGG + chr6_3:4833650-4833669 Msa0934800:intron 50.0%
ACTGCAGCTGAGATGTTCCT+GGG + chr6_3:4833948-4833967 Msa0934800:intron 50.0%
GAAATTGCCGGCAGTTACAG+GGG - chr6_3:4834155-4834174 None:intergenic 50.0%
CGAAATTGCCGGCAGTTACA+GGG - chr6_3:4834156-4834175 None:intergenic 50.0%
ACGAAATTGCCGGCAGTTAC+AGG - chr6_3:4834157-4834176 None:intergenic 50.0%
! TGCCGGCAATTTCGTTGACT+TGG + chr6_3:4834162-4834181 Msa0934800:CDS 50.0%
!! GACGGGTTTGTTGTCCAAAC+CGG + chr6_3:4834743-4834762 Msa0934800:CDS 50.0%
GGATCAATAAAACCCTCGGC+AGG - chr6_3:4834782-4834801 None:intergenic 50.0%
!! ACCCTCTGTCTTGTTTGGAC+AGG + chr6_3:4835097-4835116 Msa0934800:intron 50.0%
CTCCTGTCCAAACAAGACAG+AGG - chr6_3:4835102-4835121 None:intergenic 50.0%
!! GTCTTGTTTGGACAGGAGCT+TGG + chr6_3:4835104-4835123 Msa0934800:intron 50.0%
AACCCCAGCTACAAGATTGC+TGG + chr6_3:4835505-4835524 Msa0934800:CDS 50.0%
TCGTTAGGCAACCCCAACGT+AGG - chr6_3:4832708-4832727 None:intergenic 55.0%
GACCGCCAATTAAGGACCCT+GGG + chr6_3:4832778-4832797 Msa0934800:CDS 55.0%
ACCGCCAATTAAGGACCCTG+GGG + chr6_3:4832779-4832798 Msa0934800:CDS 55.0%
TGCCGTGGCACCAAAACAGA+AGG + chr6_3:4833340-4833359 Msa0934800:CDS 55.0%
TAGGCTACTGGCCGAATCAC+TGG + chr6_3:4833625-4833644 Msa0934800:intron 55.0%
GACTGCAGCTGAGATGTTCC+TGG + chr6_3:4833947-4833966 Msa0934800:intron 55.0%
CTGCAGCTGAGATGTTCCTG+GGG + chr6_3:4833949-4833968 Msa0934800:intron 55.0%
CTGCAGAAATGCAATGCCCC+AGG - chr6_3:4833968-4833987 None:intergenic 55.0%
GATGGCATGGAGATCCAGAG+AGG + chr6_3:4834202-4834221 Msa0934800:CDS 55.0%
GGACCGCCAATTAAGGACCC+TGG + chr6_3:4832777-4832796 Msa0934800:CDS 60.0%
GCCCCAGGGTCCTTAATTGG+CGG - chr6_3:4832783-4832802 None:intergenic 60.0%
GTCCAAACCGGTGACCCTGA+AGG + chr6_3:4834755-4834774 Msa0934800:CDS 60.0%
! GACCTTCAGGGTCACCGGTT+TGG - chr6_3:4834760-4834779 None:intergenic 60.0%
AACCCTCGGCAGGACCTTCA+GGG - chr6_3:4834772-4834791 None:intergenic 60.0%
AAACCCTCGGCAGGACCTTC+AGG - chr6_3:4834773-4834792 None:intergenic 60.0%
GCATCGCGAGCCCTCAAGCA+AGG + chr6_3:4833197-4833216 Msa0934800:CDS 65.0%
GGCAGGACCTTCAGGGTCAC+CGG - chr6_3:4834765-4834784 None:intergenic 65.0%
TGACCCTGAAGGTCCTGCCG+AGG + chr6_3:4834766-4834785 Msa0934800:CDS 65.0%
GACCCTGAAGGTCCTGCCGA+GGG + chr6_3:4834767-4834786 Msa0934800:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 4831461 4835922 4831461 ID=Msa0934800;Name=Msa0934800
chr6_3 mRNA 4831461 4835922 4831461 ID=Msa0934800-mRNA-1;Parent=Msa0934800;Name=Msa0934800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=134|1|1|1|1|1|7|391|455
chr6_3 exon 4831461 4831792 4831461 ID=Msa0934800-mRNA-1:exon:1474;Parent=Msa0934800-mRNA-1
chr6_3 exon 4832633 4832923 4832633 ID=Msa0934800-mRNA-1:exon:1475;Parent=Msa0934800-mRNA-1
chr6_3 exon 4833185 4833384 4833185 ID=Msa0934800-mRNA-1:exon:1476;Parent=Msa0934800-mRNA-1
chr6_3 exon 4833988 4834223 4833988 ID=Msa0934800-mRNA-1:exon:1477;Parent=Msa0934800-mRNA-1
chr6_3 exon 4834741 4834883 4834741 ID=Msa0934800-mRNA-1:exon:1478;Parent=Msa0934800-mRNA-1
chr6_3 exon 4835119 4835190 4835119 ID=Msa0934800-mRNA-1:exon:1479;Parent=Msa0934800-mRNA-1
chr6_3 exon 4835304 4835922 4835304 ID=Msa0934800-mRNA-1:exon:1480;Parent=Msa0934800-mRNA-1
chr6_3 five_prime_UTR 4831461 4831594 4831461 ID=Msa0934800-mRNA-1:five_prime_utr;Parent=Msa0934800-mRNA-1
chr6_3 CDS 4831595 4831792 4831595 ID=Msa0934800-mRNA-1:cds;Parent=Msa0934800-mRNA-1
chr6_3 CDS 4832633 4832923 4832633 ID=Msa0934800-mRNA-1:cds;Parent=Msa0934800-mRNA-1
chr6_3 CDS 4833185 4833384 4833185 ID=Msa0934800-mRNA-1:cds;Parent=Msa0934800-mRNA-1
chr6_3 CDS 4833988 4834223 4833988 ID=Msa0934800-mRNA-1:cds;Parent=Msa0934800-mRNA-1
chr6_3 CDS 4834741 4834883 4834741 ID=Msa0934800-mRNA-1:cds;Parent=Msa0934800-mRNA-1
chr6_3 CDS 4835119 4835190 4835119 ID=Msa0934800-mRNA-1:cds;Parent=Msa0934800-mRNA-1
chr6_3 CDS 4835304 4835531 4835304 ID=Msa0934800-mRNA-1:cds;Parent=Msa0934800-mRNA-1
chr6_3 three_prime_UTR 4835532 4835922 4835532 ID=Msa0934800-mRNA-1:three_prime_utr;Parent=Msa0934800-mRNA-1
Gene Sequence

>Msa0934800

ATGGCATCATCCATCATTCCTCGTCACTATTGTTCCAACTTTGCAACTACCCCCATTTTGTTTCACTCCAATAATCACTCTAAGAGTCTTAATTATCCATTTTTGAATACCAATGTTGGAGGATTTAGTAGAAGTTTCACTACTCGTTGCTCTTACCAAACTCCACCAACCCATCATTCTCAATTTGATCATAAACATAAAGGAAAATCATTTTGCTTAAAGCAATGTGCGATATCTTTAGCACTTGCGGTCGGGTTAATAACAGGAGTTCCTACGTTGGGGTTGCCTAACGATGCACATGCAGCTAACCCTGTTTTACCTGATCTGTCTGTATTGATATCTGGACCGCCAATTAAGGACCCTGGGGCATTGTTGAGATATGGTCTTCCTATTGACAATAAGGCGATTAGAGAAGTTCAAAAACCACTTGAAGATATTACTGATAGTCTCAAGATTTCTGGAGTCAAGGCACTCGACTCTGTCGAAAGAAATGTGAGACAGGCATCGCGAGCCCTCAAGCAAGGTAAGACATTAATTATATCAGGTTTAGCTGAATCAAAGAAAGAACATGGAATTGAACTGCTTGATAAGCTGGAAGCTGGTATCGATGAGTTTGAACTGATACTACAAGATAGGAATCGAGTTGCCGTGGCACCAAAACAGAAGGAACTTCTTCAATATGTTGGAGGTGTTGAAGAAGACATGGTTGATGGATTTCCATATGAAGTGCCTGAGGAATACCGAAATTTGCCTTTATTGAAAGGGAGAGCAGCTGTAGATATGAAGGTCAAGATTAAAGACAATCCAAACTTAGAGGAATGTGTGTTCCACATAGTTCTTGATGGTTATAATGCCCCTGTAACTGCCGGCAATTTCGTTGACTTGGTAGAAAGACACTTTTATGATGGCATGGAGATCCAGAGAGCGGACGGGTTTGTTGTCCAAACCGGTGACCCTGAAGGTCCTGCCGAGGGTTTTATTGATCCAAGTACAGAGAAAACAAGGACTATACCTTTAGAAATTATGGTAGAGGGAGAAAAGGCACCTTTTTATGGCGAAACTCTAGAGGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCATTTGGAACAATGGCGATGGCAAGAGATGAATTTGAGGACAACTCTGGCTCTAGCCAAGTATTTTGGCTATTGAAAGAAAGTGAGCTAACTCCAAGCAATGCCAACATATTGGATGGTAGATATGCAGTTTTTGGCTATGTAACAGAAAATGAAGATTTCTTGGCAGACCTTAAGGTTGGTGATGTCATAGAATCCATTCAAGTTGTTTCTGGTTTGGATAATTTGGTGAACCCCAGCTACAAGATTGCTGGTTAA

Protein sequence

>Msa0934800

MASSIIPRHYCSNFATTPILFHSNNHSKSLNYPFLNTNVGGFSRSFTTRCSYQTPPTHHSQFDHKHKGKSFCLKQCAISLALAVGLITGVPTLGLPNDAHAANPVLPDLSVLISGPPIKDPGALLRYGLPIDNKAIREVQKPLEDITDSLKISGVKALDSVERNVRQASRALKQGKTLIISGLAESKKEHGIELLDKLEAGIDEFELILQDRNRVAVAPKQKELLQYVGGVEEDMVDGFPYEVPEEYRNLPLLKGRAAVDMKVKIKDNPNLEECVFHIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKAPFYGETLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEDFLADLKVGDVIESIQVVSGLDNLVNPSYKIAG*