AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589680 MtrunA17_Chr4g0006981 96.970 297 9 0 1 297 17 313 0.0 595
Msa0589680 MtrunA17_Chr4g0047431 47.368 114 53 2 183 296 147 253 8.59e-26 106
Msa0589680 MtrunA17_Chr4g0047431 35.758 165 87 7 133 291 334 485 9.32e-22 94.7
Msa0589680 MtrunA17_Chr4g0047431 40.385 104 59 1 188 291 277 377 1.50e-19 88.6
Msa0589680 MtrunA17_Chr2g0332591 35.417 96 59 1 196 291 55 147 1.71e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589680 AT2G38270.1 65.328 274 87 2 24 295 25 292 2.49e-132 377
Msa0589680 AT3G54900.1 44.828 116 57 2 180 291 51 163 1.55e-27 105
Msa0589680 AT4G04950.1 41.935 124 56 2 173 296 143 250 8.91e-23 98.2
Msa0589680 AT4G04950.1 41.667 96 53 1 196 291 390 482 2.67e-20 90.9
Msa0589680 AT4G04950.1 40.000 100 57 1 192 291 279 375 4.96e-17 81.6
Msa0589680 AT3G15660.2 37.500 104 62 1 193 296 62 162 1.57e-19 84.3
Msa0589680 AT3G15660.1 37.500 104 62 1 193 296 62 162 1.57e-19 84.3

Find 108 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAGGGTAGGGGTATTT+TGG 0.140233 4_2:+12872020 None:intergenic
TGGTAGGGTTTGAGGGAAAT+TGG 0.201721 4_2:+12871962 None:intergenic
GAGCCATGACTGTGGCTTTC+GGG 0.212321 4_2:+12871937 None:intergenic
CGTAGGTTTGTGGAGGAGTT+GGG 0.231517 4_2:+12871986 None:intergenic
TCCACATAACGGCGCACTTC+TGG 0.276069 4_2:+12866388 None:intergenic
TTGGATGAAGATTATAACTA+TGG 0.276665 4_2:-12866302 Msa0589680:CDS
TCTTACCCAAGTGGCGTTTC+CGG 0.280532 4_2:+12866538 None:intergenic
GTAGAATGTGTGGAACATTA+AGG 0.286516 4_2:-12866079 Msa0589680:three_prime_UTR
TTCGGGGATGGTAGGGTTTG+AGG 0.288346 4_2:+12871954 None:intergenic
GCGTTTCCGGATTCATTTCC+AGG 0.302092 4_2:+12866551 None:intergenic
CAAGTTGGTAAAAGAGAATA+AGG 0.302408 4_2:-12866432 Msa0589680:CDS
CGAGCCATGACTGTGGCTTT+CGG 0.305942 4_2:+12871936 None:intergenic
AAAGCTCCGGCACCGATTTC+CGG 0.327461 4_2:+12871735 None:intergenic
CGAAGATCAGCCTTCTTCTT+AGG 0.340552 4_2:+12866509 None:intergenic
GGATTCTCTCAGAGGGTAAT+AGG 0.345382 4_2:-12866368 Msa0589680:CDS
GGTAGGGTTTGAGGGAAATT+GGG 0.361426 4_2:+12871963 None:intergenic
GCGTAGGTTTGTGGAGGAGT+TGG 0.369921 4_2:+12871985 None:intergenic
GGAAATTGGGCGTAGGTTTG+TGG 0.385996 4_2:+12871976 None:intergenic
GTAGGTTTGTGGAGGAGTTG+GGG 0.395804 4_2:+12871987 None:intergenic
CTGTGGCTTTCGGGGATGGT+AGG 0.408187 4_2:+12871946 None:intergenic
CCATCCAAGACTTCCATGCT+TGG 0.410922 4_2:+12866606 None:intergenic
TGTCTCGGCGCACCGGAAAT+CGG 0.419054 4_2:-12871747 Msa0589680:CDS
TGGGTCAAAGATTCTCTGTC+AGG 0.419390 4_2:+12866626 None:intergenic
GGAGCTTTGTGGCTCTGTTA+AGG 0.426111 4_2:-12871720 Msa0589680:intron
TACTATATAGGTTGGGGTAG+TGG 0.427837 4_2:-12866654 Msa0589680:intron
AAATCGGTGCCGGAGCTTTG+TGG 0.430690 4_2:-12871731 Msa0589680:CDS
TGTTAAAACAAGACATTAGT+AGG 0.431989 4_2:+12865951 None:intergenic
CATCCAAGACTTCCATGCTT+GGG 0.448569 4_2:+12866607 None:intergenic
TGACCCAAGCATGGAAGTCT+TGG 0.456099 4_2:-12866610 Msa0589680:CDS
TGTGGCTTTCGGGGATGGTA+GGG 0.460276 4_2:+12871947 None:intergenic
CTCACCGTTCTTATCATAAA+CGG 0.466803 4_2:+12871808 None:intergenic
GGTAATAGGCATTCTTGAAA+AGG 0.467989 4_2:-12866354 Msa0589680:CDS
TAGAATGTGTGGAACATTAA+GGG 0.473402 4_2:-12866078 Msa0589680:three_prime_UTR
AGAGGAGTTGTGTAGAAGAG+AGG 0.474399 4_2:+12872071 None:intergenic
GAAGAACTTCCGTCGGGTGC+CGG 0.476879 4_2:-12871839 Msa0589680:CDS
TCGGGGATGGTAGGGTTTGA+GGG 0.479500 4_2:+12871955 None:intergenic
TCAGCCTTCTTCTTAGGCTG+TGG 0.482968 4_2:+12866515 None:intergenic
TTGACCTCCATGTTTGAGAA+AGG 0.485069 4_2:-12866191 Msa0589680:CDS
AAGATTATAACTATGGATTG+AGG 0.490227 4_2:-12866295 Msa0589680:CDS
TTATGAGAGTGTAGATGTAT+TGG 0.491403 4_2:-12866321 Msa0589680:CDS
GTTCCACCTGGAAATGAATC+CGG 0.492241 4_2:-12866557 Msa0589680:CDS
CACTTCACCTTTCTCAAACA+TGG 0.492756 4_2:+12866184 None:intergenic
CTGCTACTGTCTCGGCGCAC+CGG 0.499962 4_2:-12871754 Msa0589680:CDS
AACGGTGAGCTTCAGTTCAT+CGG 0.500069 4_2:-12871794 Msa0589680:CDS
TCCAGAAGTGCGCCGTTATG+TGG 0.500421 4_2:-12866389 Msa0589680:CDS
ATCATAAACGGCGTAAACTC+CGG 0.503980 4_2:+12871820 None:intergenic
AGATTATAACTATGGATTGA+GGG 0.506926 4_2:-12866294 Msa0589680:CDS
GGCGCACCGGAAATCGGTGC+CGG 0.507304 4_2:-12871741 Msa0589680:CDS
ATGACTGTGGCTTTCGGGGA+TGG 0.508270 4_2:+12871942 None:intergenic
CACCGTCACCGGTGAAGTAT+CGG 0.509355 4_2:+12871889 None:intergenic
TTGAATGGTGAACTTGTTGG+TGG 0.513486 4_2:-12866224 Msa0589680:CDS
TTCACCGGTGACGGTGTCAC+CGG 0.514381 4_2:-12871882 Msa0589680:CDS
CTCAACTGACCATTCATCAA+TGG 0.519014 4_2:-12872107 Msa0589680:exon
CGCCGATACTTCACCGGTGA+CGG 0.522467 4_2:-12871891 Msa0589680:CDS
TGGGGTGGAAATTGAATGAA+AGG 0.522766 4_2:+12872005 None:intergenic
ATGAATCCGGAAACGCCACT+TGG 0.525120 4_2:-12866544 Msa0589680:CDS
TAATATTGCTGCTACTGTCT+CGG 0.529918 4_2:-12871762 Msa0589680:CDS
AGTTACCAAAATAATTCCAC+TGG 0.541893 4_2:-12872161 None:intergenic
ACCCGACGGAAGTTCTTCTC+CGG 0.545914 4_2:+12871844 None:intergenic
GGAAATTGAATGAAAGGGTA+GGG 0.551379 4_2:+12872011 None:intergenic
TGAAGAGCTCGTGGACAAGT+TGG 0.551751 4_2:-12866447 Msa0589680:CDS
TAAGGTAGTTGCATTCATCA+AGG 0.556799 4_2:-12866414 Msa0589680:CDS
TTAACAGAGCCACAAAGCTC+CGG 0.559023 4_2:+12871722 None:intergenic
TGATGTTAGCCATTGATGAA+TGG 0.566582 4_2:+12872098 None:intergenic
GTTTGAGGGAAATTGGGCGT+AGG 0.569238 4_2:+12871969 None:intergenic
TTTGAGAAAGGTGAAGTGGC+TGG 0.570458 4_2:-12866179 Msa0589680:CDS
ACAGTCATGGCTCGTCGCCA+TGG 0.572974 4_2:-12871927 Msa0589680:CDS
CCAAGCATGGAAGTCTTGGA+TGG 0.573626 4_2:-12866606 Msa0589680:CDS
GTTAGTTGCACGTGACGACC+AGG 0.575913 4_2:+12866479 None:intergenic
AAGACCACAGCCTAAGAAGA+AGG 0.577244 4_2:-12866519 Msa0589680:CDS
ACCGGAGAAGAACTTCCGTC+GGG 0.581537 4_2:-12871845 Msa0589680:CDS
ATGGGAAATGATGATAAGAG+AGG 0.584304 4_2:+12872053 None:intergenic
TTTGAAATGAGGGACTAGCT+AGG 0.584313 4_2:-12866103 Msa0589680:three_prime_UTR
GAGAATCTTTGACCCAAGCA+TGG 0.586957 4_2:-12866619 Msa0589680:CDS
CGTCCCTCTTGAAGAGCTCG+TGG 0.588084 4_2:-12866456 Msa0589680:CDS
CACGAGCTCTTCAAGAGGGA+CGG 0.589016 4_2:+12866457 None:intergenic
AAGAACACATAAAGATCAGT+GGG 0.590962 4_2:-12866583 Msa0589680:CDS
TGGAAATTGAATGAAAGGGT+AGG 0.592963 4_2:+12872010 None:intergenic
AAACCTCGCCGATACTTCAC+CGG 0.596159 4_2:-12871897 Msa0589680:CDS
GGTTTGTGGAGGAGTTGGGG+TGG 0.598414 4_2:+12871990 None:intergenic
ATCAGTGGGAAAGTTCCACC+TGG 0.600855 4_2:-12866569 Msa0589680:CDS
CGTTATGTGGATTCTCTCAG+AGG 0.601281 4_2:-12866376 Msa0589680:CDS
GAAGAACACATAAAGATCAG+TGG 0.602390 4_2:-12866584 Msa0589680:CDS
AGCCATGACTGTGGCTTTCG+GGG 0.608890 4_2:+12871938 None:intergenic
ATAGGCATTCTTGAAAAGGA+AGG 0.610176 4_2:-12866350 Msa0589680:CDS
CTCTGAGAGAATCCACATAA+CGG 0.611300 4_2:+12866377 None:intergenic
TTGTCCACGAGCTCTTCAAG+AGG 0.611733 4_2:+12866452 None:intergenic
AATTGGGCGTAGGTTTGTGG+AGG 0.611873 4_2:+12871979 None:intergenic
TGAATCCGGAAACGCCACTT+GGG 0.613599 4_2:-12866543 Msa0589680:CDS
AAGGTAGTTGCATTCATCAA+GGG 0.614128 4_2:-12866413 Msa0589680:CDS
CCGGAAAACGATGAAGTCAC+CGG 0.615159 4_2:-12871863 Msa0589680:CDS
CACCGGAGAAGAACTTCCGT+CGG 0.622393 4_2:-12871846 Msa0589680:CDS
ATCCCCGAAAGCCACAGTCA+TGG 0.627032 4_2:-12871940 Msa0589680:CDS
GAAATTGAATGAAAGGGTAG+GGG 0.632064 4_2:+12872012 None:intergenic
GCGTAAACTCCGGCACCCGA+CGG 0.641123 4_2:+12871830 None:intergenic
GGGGTGGAAATTGAATGAAA+GGG 0.644100 4_2:+12872006 None:intergenic
CTAGCTAGGAGTAGAATGTG+TGG 0.647614 4_2:-12866089 Msa0589680:three_prime_UTR
GCTGATCTTCGATTAACACC+TGG 0.649446 4_2:-12866497 Msa0589680:CDS
TGTCCACGAGCTCTTCAAGA+GGG 0.653430 4_2:+12866453 None:intergenic
TACGCCGTTTATGATAAGAA+CGG 0.658415 4_2:-12871812 Msa0589680:CDS
CATGTTTGAGAAAGGTGAAG+TGG 0.660920 4_2:-12866183 Msa0589680:CDS
GTTATGTGGATTCTCTCAGA+GGG 0.661671 4_2:-12866375 Msa0589680:CDS
TTTCCGGATTCATTTCCAGG+TGG 0.667945 4_2:+12866554 None:intergenic
AGGCTGTGGTCTTACCCAAG+TGG 0.670747 4_2:+12866529 None:intergenic
GAGAAGCAACATAAGTCCAG+TGG 0.695061 4_2:+12872145 None:intergenic
ATGGCGACGAGCCATGACTG+TGG 0.695521 4_2:+12871929 None:intergenic
TTCACCTTTCTCAAACATGG+AGG 0.696862 4_2:+12866187 None:intergenic
TCACCGGTGAAGTATCGGCG+AGG 0.736402 4_2:+12871894 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATATTTTTTTT+TGG - chr4_2:12868104-12868123 Msa0589680:intron 0.0%
!!! TTTATTTTATATTTTTTTTT+GGG - chr4_2:12868105-12868124 Msa0589680:intron 0.0%
!! TAAAAATAAAAAATAAAATA+TGG + chr4_2:12869047-12869066 None:intergenic 0.0%
!!! AAAAATTTAAAAAATATTTT+TGG - chr4_2:12869187-12869206 Msa0589680:intron 0.0%
!!! TTTTTTTTTTAAAAAAATAT+TGG + chr4_2:12869682-12869701 None:intergenic 0.0%
!! AAAAAAAAAAAAAAATTTAA+CGG + chr4_2:12871253-12871272 None:intergenic 0.0%
!!! ATTTTTGTTTAAATCTTATA+AGG + chr4_2:12866515-12866534 None:intergenic 10.0%
!! ATCTAAAAAAAATAATTACA+GGG + chr4_2:12867963-12867982 None:intergenic 10.0%
!! AATCTAAAAAAAATAATTAC+AGG + chr4_2:12867964-12867983 None:intergenic 10.0%
!! AAAACAAAAAAAATTTATGA+GGG + chr4_2:12867990-12868009 None:intergenic 10.0%
!!! TTATTTCCAAATTTTTTTTT+TGG - chr4_2:12868691-12868710 Msa0589680:intron 10.0%
!!! TATTTCCAAATTTTTTTTTT+GGG - chr4_2:12868692-12868711 Msa0589680:intron 10.0%
!!! AAGAAATTCATATTTTTTTT+CGG + chr4_2:12868933-12868952 None:intergenic 10.0%
!! TTAAAAAAATGAAAAAATTC+TGG + chr4_2:12869019-12869038 None:intergenic 10.0%
!!! TCTAAAAAATTTTTTTTACA+TGG - chr4_2:12869898-12869917 Msa0589680:intron 10.0%
!!! CTAAAAAATTTTTTTTACAT+GGG - chr4_2:12869899-12869918 Msa0589680:intron 10.0%
!!! AATCTTTTAAATTAAATTCA+AGG - chr4_2:12872000-12872019 Msa0589680:CDS 10.0%
!!! ATCTTTTAAATTAAATTCAA+GGG - chr4_2:12872001-12872020 Msa0589680:CDS 10.0%
!!! ATATTGAGTTAATTTTGAAT+TGG - chr4_2:12866586-12866605 Msa0589680:CDS 15.0%
!!! AATAACATTTTTAAGATTTC+CGG + chr4_2:12867583-12867602 None:intergenic 15.0%
!!! TTAAAAATGTTATTTCAAAC+AGG - chr4_2:12867589-12867608 Msa0589680:intron 15.0%
!! TGTTTGATTGTTTATAAAAT+AGG - chr4_2:12867669-12867688 Msa0589680:intron 15.0%
!! GTTTGATTGTTTATAAAATA+GGG - chr4_2:12867670-12867689 Msa0589680:intron 15.0%
!!! GTGATACTTTATTTAATATA+GGG - chr4_2:12867889-12867908 Msa0589680:intron 15.0%
!! TCTAAAAAAAATAATTACAG+GGG + chr4_2:12867962-12867981 None:intergenic 15.0%
!! CAAAACAAAAAAAATTTATG+AGG + chr4_2:12867991-12868010 None:intergenic 15.0%
!!! CTCATAAATTTTTTTTGTTT+TGG - chr4_2:12867989-12868008 Msa0589680:intron 15.0%
!!! AATTTTTTTTGTTTTGGTTT+TGG - chr4_2:12867995-12868014 Msa0589680:intron 15.0%
!! CTGAAAATATTAAAAAATTC+TGG - chr4_2:12868227-12868246 Msa0589680:intron 15.0%
!! TCTGAAAAAAATTAAAATTC+TGG - chr4_2:12868432-12868451 Msa0589680:intron 15.0%
!!! CGAAATTTTAATTAAAATTC+TGG - chr4_2:12868469-12868488 Msa0589680:intron 15.0%
!! TAAAAATTGTGAAAAAATTC+TGG - chr4_2:12868522-12868541 Msa0589680:intron 15.0%
!! AAATTCCCAAAAAAAAAATT+TGG + chr4_2:12868700-12868719 None:intergenic 15.0%
!! TAAAAATGAAAACAAAAATC+TGG + chr4_2:12869077-12869096 None:intergenic 15.0%
!! GAAATCAAAAAATAAGTTAA+GGG - chr4_2:12869487-12869506 Msa0589680:intron 15.0%
!! GAAACAAAAAAATAAGTTAA+GGG - chr4_2:12869518-12869537 Msa0589680:intron 15.0%
!! AAGTCTCTTAATATATTAAA+GGG + chr4_2:12869972-12869991 None:intergenic 15.0%
!!! TAATTGTTTAGAACAATTTG+TGG - chr4_2:12866412-12866431 Msa0589680:CDS 20.0%
!!! TTTGTAAATTTTATTGCAGT+AGG - chr4_2:12866655-12866674 Msa0589680:intron 20.0%
!! TAAAATCACATCCTTAATTT+CGG - chr4_2:12866753-12866772 Msa0589680:intron 20.0%
!!! GTCATTTTTCGAATTATAAT+CGG + chr4_2:12867104-12867123 None:intergenic 20.0%
!! AATTCAATGTAATAATGTGT+CGG - chr4_2:12867126-12867145 Msa0589680:intron 20.0%
!! TCTGCTTATTATAAGAAAAT+GGG - chr4_2:12867249-12867268 Msa0589680:intron 20.0%
!!! TTCTTTTATAGTCTTTCATA+AGG - chr4_2:12867459-12867478 Msa0589680:intron 20.0%
!!! GGTGATACTTTATTTAATAT+AGG - chr4_2:12867888-12867907 Msa0589680:intron 20.0%
!! TATTTATAAACCGAGAATAA+GGG - chr4_2:12868725-12868744 Msa0589680:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+AGG - chr4_2:12868810-12868829 Msa0589680:intron 20.0%
!!! ATGAATTTTTTTCCGTTATA+CGG - chr4_2:12868889-12868908 Msa0589680:intron 20.0%
!!! TTCCAAATTTTTTTCAATAC+CGG + chr4_2:12868965-12868984 None:intergenic 20.0%
!!! TTTTGGCTTAATTAATGATT+TGG - chr4_2:12869204-12869223 Msa0589680:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG + chr4_2:12869607-12869626 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG + chr4_2:12869606-12869625 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr4_2:12869264-12869283 Msa0589680:intron 20.0%
!!! ACGAAACTTTTAATAGTTAA+GGG + chr4_2:12869547-12869566 None:intergenic 20.0%
!!! AACGAAACTTTTAATAGTTA+AGG + chr4_2:12869546-12869565 None:intergenic 20.0%
!!! AACTATTAAAAGTTTCGTTT+TGG - chr4_2:12869324-12869343 Msa0589680:intron 20.0%
!! GAAACCAAAAATTAAGTTAA+GGG + chr4_2:12869351-12869370 None:intergenic 20.0%
!! GAAACCTAAAAATAAGTTAA+GGG - chr4_2:12869456-12869475 Msa0589680:intron 20.0%
!!! CTTATTTTTTGATTTCGTTT+TGG + chr4_2:12869483-12869502 None:intergenic 20.0%
!! CGAAATCAAAAAATAAGTTA+AGG - chr4_2:12869486-12869505 Msa0589680:intron 20.0%
!!! CTTATTTTTTTGTTTCGTTT+TGG + chr4_2:12869514-12869533 None:intergenic 20.0%
!! CGAAACAAAAAAATAAGTTA+AGG - chr4_2:12869517-12869536 Msa0589680:intron 20.0%
!!! AACTATTAAAAGTTTCGTTT+TGG + chr4_2:12869324-12869343 None:intergenic 20.0%
!!! AACGAAACTTTTAATAGTTA+AGG - chr4_2:12869546-12869565 Msa0589680:intron 20.0%
!!! ACGAAACTTTTAATAGTTAA+GGG - chr4_2:12869547-12869566 Msa0589680:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr4_2:12869264-12869283 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr4_2:12869606-12869625 Msa0589680:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr4_2:12869607-12869626 Msa0589680:intron 20.0%
!! GAAGTCTCTTAATATATTAA+AGG + chr4_2:12869973-12869992 None:intergenic 20.0%
!!! AAATACCTTTGAAAAGATAA+AGG + chr4_2:12870201-12870220 None:intergenic 20.0%
!! TGTAATATACAAACAGTATT+TGG - chr4_2:12871215-12871234 Msa0589680:intron 20.0%
!!! GGTATAAGTAATACTTTTAA+TGG - chr4_2:12872120-12872139 Msa0589680:five_prime_UTR 20.0%
!!! ATACTTTTAATGGTATACTA+AGG - chr4_2:12872130-12872149 Msa0589680:five_prime_UTR 20.0%
!!! AGTTTTGAATTGAAGTGTTA+TGG - chr4_2:12866337-12866356 Msa0589680:CDS 25.0%
! ACTTGTGTATTTCAAAATTG+AGG + chr4_2:12866636-12866655 None:intergenic 25.0%
!! GTATAATAGTCTTAAAGAGT+TGG - chr4_2:12866683-12866702 Msa0589680:intron 25.0%
! TTGGTTACTCAATTGTAAAT+TGG - chr4_2:12866702-12866721 Msa0589680:intron 25.0%
! AATTTGATCCAATTTCATTG+TGG - chr4_2:12866803-12866822 Msa0589680:intron 25.0%
! ATTTGATCCAATTTCATTGT+GGG - chr4_2:12866804-12866823 Msa0589680:intron 25.0%
! GTAACTAAGTTTGTAGAAAT+GGG + chr4_2:12866872-12866891 None:intergenic 25.0%
! AGTAACTAAGTTTGTAGAAA+TGG + chr4_2:12866873-12866892 None:intergenic 25.0%
! AAAGCTTCAAAACAATTCTA+GGG + chr4_2:12866929-12866948 None:intergenic 25.0%
!!! TAGAATTGTTTTGAAGCTTT+GGG - chr4_2:12866929-12866948 Msa0589680:intron 25.0%
!! TTTGAAGCATATATATTCCT+CGG + chr4_2:12867203-12867222 None:intergenic 25.0%
! GAATATATATGCTTCAAAGA+TGG - chr4_2:12867205-12867224 Msa0589680:intron 25.0%
!! CATTTTCTTATAATAAGCAG+AGG + chr4_2:12867250-12867269 None:intergenic 25.0%
! CTCTGCTTATTATAAGAAAA+TGG - chr4_2:12867248-12867267 Msa0589680:intron 25.0%
! CTGCTTATTATAAGAAAATG+GGG - chr4_2:12867250-12867269 Msa0589680:intron 25.0%
!!! AAGTTCATTTTTTACGATGA+AGG - chr4_2:12867281-12867300 Msa0589680:intron 25.0%
! TAATGGAAAGGATACTTATT+AGG - chr4_2:12867430-12867449 Msa0589680:intron 25.0%
! TTATAGTCTTTCATAAGGAA+AGG - chr4_2:12867464-12867483 Msa0589680:intron 25.0%
! TCATAAGGAAAGGAAATAAT+TGG - chr4_2:12867474-12867493 Msa0589680:intron 25.0%
! TGTTACAATGTTATTCTTGA+TGG - chr4_2:12867551-12867570 Msa0589680:intron 25.0%
!! AAAAGACAAATGCCAAATTT+TGG - chr4_2:12867695-12867714 Msa0589680:intron 25.0%
! TATGAGTTAGAACCAAAATT+TGG + chr4_2:12867710-12867729 None:intergenic 25.0%
!! ATATGATGATAGTTTGAAGT+TGG - chr4_2:12867731-12867750 Msa0589680:intron 25.0%
! ACAAAAAAAATTTATGAGGG+TGG + chr4_2:12867987-12868006 None:intergenic 25.0%
! TATATATATATGTCGAGCTT+AGG - chr4_2:12868654-12868673 Msa0589680:intron 25.0%
! GTATTTATAAACCGAGAATA+AGG - chr4_2:12868724-12868743 Msa0589680:intron 25.0%
!!! CATATTTTTTCCCTTATTCT+CGG + chr4_2:12868738-12868757 None:intergenic 25.0%
!!! TGAATTTCTTTCATTTTTCC+CGG - chr4_2:12868943-12868962 Msa0589680:intron 25.0%
!!! TCCAAATTTTTTTCAATACC+GGG + chr4_2:12868964-12868983 None:intergenic 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr4_2:12869638-12869657 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr4_2:12869637-12869656 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr4_2:12869235-12869254 Msa0589680:intron 25.0%
! GAAACCAAAAAGTAACTTAA+GGG + chr4_2:12869578-12869597 None:intergenic 25.0%
! CGAAACCAAAAATTAAGTTA+AGG + chr4_2:12869352-12869371 None:intergenic 25.0%
!!! CTTAATTTTTGGTTTCGTTT+TGG - chr4_2:12869355-12869374 Msa0589680:intron 25.0%
!!! CTTATTTTTAGGTTTCGTTT+TGG + chr4_2:12869452-12869471 None:intergenic 25.0%
! CGAAACCTAAAAATAAGTTA+AGG - chr4_2:12869455-12869474 Msa0589680:intron 25.0%
! GAAACCAAAAAGTAACTTAA+GGG - chr4_2:12869578-12869597 Msa0589680:intron 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG + chr4_2:12869235-12869254 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr4_2:12869637-12869656 Msa0589680:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr4_2:12869638-12869657 Msa0589680:intron 25.0%
!!! TATTGGCTTAATTACTCTTT+TGG + chr4_2:12869665-12869684 None:intergenic 25.0%
!! ACAAAATAATTTTATGAGGG+TGG - chr4_2:12869873-12869892 Msa0589680:intron 25.0%
!!! TTTTTAGCCCATGTAATATA+GGG + chr4_2:12869940-12869959 None:intergenic 25.0%
! TTCATGATTAACATTGGATA+GGG - chr4_2:12869990-12870009 Msa0589680:intron 25.0%
!! GTGAAAAGTTTGCTTTAATT+TGG - chr4_2:12870242-12870261 Msa0589680:intron 25.0%
! ACTTCTTAAACACAATAAGT+GGG - chr4_2:12870863-12870882 Msa0589680:intron 25.0%
! AAATCTCCAAAAGAAATTGT+GGG + chr4_2:12870947-12870966 None:intergenic 25.0%
! AAAATCTCCAAAAGAAATTG+TGG + chr4_2:12870948-12870967 None:intergenic 25.0%
! AATTGAAAAGTCTCAAATCA+TGG + chr4_2:12871106-12871125 None:intergenic 25.0%
! AAATGCAGAAAAAGACATAT+GGG + chr4_2:12871170-12871189 None:intergenic 25.0%
! AAAATGCAGAAAAAGACATA+TGG + chr4_2:12871171-12871190 None:intergenic 25.0%
! TGTTTGTATATTACATCTGT+AGG + chr4_2:12871210-12871229 None:intergenic 25.0%
! ATCATCAGGAAAGTAATATT+TGG + chr4_2:12871327-12871346 None:intergenic 25.0%
! ACAATGAAAAATTCATCATC+AGG + chr4_2:12871341-12871360 None:intergenic 25.0%
! TGTGAAATTGTCTACTATAT+AGG - chr4_2:12871358-12871377 Msa0589680:intron 25.0%
! AAATTGTCTACTATATAGGT+TGG - chr4_2:12871362-12871381 Msa0589680:intron 25.0%
! AATTGTCTACTATATAGGTT+GGG - chr4_2:12871363-12871382 Msa0589680:intron 25.0%
! TTGGATGAAGATTATAACTA+TGG - chr4_2:12871722-12871741 Msa0589680:CDS 25.0%
!! AAGATTATAACTATGGATTG+AGG - chr4_2:12871729-12871748 Msa0589680:CDS 25.0%
!! AGATTATAACTATGGATTGA+GGG - chr4_2:12871730-12871749 Msa0589680:CDS 25.0%
!! CACTTAAAAAGTATAGCAAT+TGG - chr4_2:12871756-12871775 Msa0589680:CDS 25.0%
! CAAAAAGTAATTATTTGTGC+CGG - chr4_2:12871874-12871893 Msa0589680:CDS 25.0%
! TGTTAAAACAAGACATTAGT+AGG + chr4_2:12872076-12872095 None:intergenic 25.0%
!! CTACTCAGTAATACTTTTAA+TGG - chr4_2:12872099-12872118 Msa0589680:exon 25.0%
!! TATTTTGGGGAGAAAAAGAT+GGG + chr4_2:12865992-12866011 None:intergenic 30.0%
ATGACAAAACTCCGAAATTA+AGG + chr4_2:12866767-12866786 None:intergenic 30.0%
AAGCTTCAAAACAATTCTAG+GGG + chr4_2:12866928-12866947 None:intergenic 30.0%
CAAAGCTTCAAAACAATTCT+AGG + chr4_2:12866930-12866949 None:intergenic 30.0%
!!! CTAGAATTGTTTTGAAGCTT+TGG - chr4_2:12866928-12866947 Msa0589680:intron 30.0%
!! AAGCTTTGGGATATAATTGA+GGG - chr4_2:12866942-12866961 Msa0589680:intron 30.0%
CCATCAACATTTATTCTAAG+AGG + chr4_2:12867029-12867048 None:intergenic 30.0%
CCTCTTAGAATAAATGTTGA+TGG - chr4_2:12867026-12867045 Msa0589680:intron 30.0%
ACACAATACATATTCAACAC+CGG - chr4_2:12867166-12867185 Msa0589680:intron 30.0%
! ATATATATTCCTCGGATTAG+GGG + chr4_2:12867195-12867214 None:intergenic 30.0%
CATATATATTCCTCGGATTA+GGG + chr4_2:12867196-12867215 None:intergenic 30.0%
ATATATGCTTCAAAGATGGA+AGG - chr4_2:12867209-12867228 Msa0589680:intron 30.0%
GATGGAAGGAAAAGAAAAAA+TGG - chr4_2:12867223-12867242 Msa0589680:intron 30.0%
TTATGATTCCCAGTGTAATT+AGG - chr4_2:12867316-12867335 Msa0589680:intron 30.0%
TTTCTTAGCCTAATTACACT+GGG + chr4_2:12867327-12867346 None:intergenic 30.0%
!! AGGCTAAGAAAGAGTATTTA+AGG - chr4_2:12867336-12867355 Msa0589680:intron 30.0%
! TTATTCTTGATGGATGAAAC+CGG - chr4_2:12867561-12867580 Msa0589680:intron 30.0%
CAGGAATAGTAATTGAAACA+TGG - chr4_2:12867608-12867627 Msa0589680:intron 30.0%
!! TTGAAGTTGGTAAGAAACAT+TGG - chr4_2:12867744-12867763 Msa0589680:intron 30.0%
!! TAAGAAACATTGGTTCAGTT+TGG - chr4_2:12867754-12867773 Msa0589680:intron 30.0%
AAGGTCTATATCATCATTAC+CGG - chr4_2:12867788-12867807 Msa0589680:intron 30.0%
GTTCGAGAGAAATTTAAGAA+AGG - chr4_2:12867815-12867834 Msa0589680:intron 30.0%
TTAAGAAAGGTCATAAGAGA+TGG - chr4_2:12867828-12867847 Msa0589680:intron 30.0%
! ATGGAAGAGATTCTAACTTT+TGG - chr4_2:12867847-12867866 Msa0589680:intron 30.0%
! AAGAGATTCTAACTTTTGGA+CGG - chr4_2:12867851-12867870 Msa0589680:intron 30.0%
TGTATTTATAAACCGAGCTT+AGG - chr4_2:12868758-12868777 Msa0589680:intron 30.0%
ATACACAAAAAACCTAAGCT+CGG + chr4_2:12868773-12868792 None:intergenic 30.0%
! TCCCGGTATTGAAAAAAATT+TGG - chr4_2:12868960-12868979 Msa0589680:intron 30.0%
CGAAACCAAAAAGTAACTTA+AGG + chr4_2:12869577-12869596 None:intergenic 30.0%
!!! GTTACTTTTTGGTTTCGTTT+TGG - chr4_2:12869295-12869314 Msa0589680:intron 30.0%
! TGGTCCCTTAACTTAATTTT+TGG - chr4_2:12869344-12869363 Msa0589680:intron 30.0%
GATGAATGTATTAGCGTTAA+GGG - chr4_2:12869425-12869444 Msa0589680:intron 30.0%
!! TGGTCCCTTAACTTATTTTT+AGG + chr4_2:12869463-12869482 None:intergenic 30.0%
!!! GTTACTTTTTGGTTTCGTTT+TGG + chr4_2:12869295-12869314 None:intergenic 30.0%
CGAAACCAAAAAGTAACTTA+AGG - chr4_2:12869577-12869596 Msa0589680:intron 30.0%
!! ATGTAATATAGGGCACTTTT+GGG + chr4_2:12869930-12869949 None:intergenic 30.0%
!! AAAAGTGCCCTATATTACAT+GGG - chr4_2:12869930-12869949 Msa0589680:intron 30.0%
!!! GTTTTTAGCCCATGTAATAT+AGG + chr4_2:12869941-12869960 None:intergenic 30.0%
AGAGACTTCATGATTAACAT+TGG - chr4_2:12869984-12870003 Msa0589680:intron 30.0%
CTTCATGATTAACATTGGAT+AGG - chr4_2:12869989-12870008 Msa0589680:intron 30.0%
TCATGATTAACATTGGATAG+GGG - chr4_2:12869991-12870010 Msa0589680:intron 30.0%
!!! CTTTTCAAAGGTATTTTGAG+TGG - chr4_2:12870205-12870224 Msa0589680:intron 30.0%
!! TTTAGGCATGAAGGTTTTAA+TGG - chr4_2:12870310-12870329 Msa0589680:intron 30.0%
!! TTAGGCATGAAGGTTTTAAT+GGG - chr4_2:12870311-12870330 Msa0589680:intron 30.0%
TGTGTTTAAGAAGTCTCATA+TGG + chr4_2:12870857-12870876 None:intergenic 30.0%
GACTTCTTAAACACAATAAG+TGG - chr4_2:12870862-12870881 Msa0589680:intron 30.0%
! ATATTTGGAGATTTAGAGCA+TGG + chr4_2:12871312-12871331 None:intergenic 30.0%
ATTGTCTACTATATAGGTTG+GGG - chr4_2:12871364-12871383 Msa0589680:intron 30.0%
AAGAACACATAAAGATCAGT+GGG - chr4_2:12871441-12871460 Msa0589680:intron 30.0%
!! CAAGTTGGTAAAAGAGAATA+AGG - chr4_2:12871592-12871611 Msa0589680:intron 30.0%
! TTATGAGAGTGTAGATGTAT+TGG - chr4_2:12871703-12871722 Msa0589680:intron 30.0%
AAAAATATCTGAGGGAATGT+AGG + chr4_2:12871782-12871801 None:intergenic 30.0%
!! TTCCCTCAGATATTTTTGAA+TGG - chr4_2:12871785-12871804 Msa0589680:CDS 30.0%
CACCATTCAAAAATATCTGA+GGG + chr4_2:12871790-12871809 None:intergenic 30.0%
TCACCATTCAAAAATATCTG+AGG + chr4_2:12871791-12871810 None:intergenic 30.0%
! TTTTTGAATGGTGAACTTGT+TGG - chr4_2:12871797-12871816 Msa0589680:CDS 30.0%
AAAACAATGCCTAAAAATGC+AGG + chr4_2:12871904-12871923 None:intergenic 30.0%
!!! TTAGGCATTGTTTTGAAATG+AGG - chr4_2:12871910-12871929 Msa0589680:CDS 30.0%
!!! TAGGCATTGTTTTGAAATGA+GGG - chr4_2:12871911-12871930 Msa0589680:CDS 30.0%
TAGAATGTGTGGAACATTAA+GGG - chr4_2:12871946-12871965 Msa0589680:CDS 30.0%
TGATGTTAGCCATTGATGAA+TGG + chr4_2:12865929-12865948 None:intergenic 35.0%
ATGGGAAATGATGATAAGAG+AGG + chr4_2:12865974-12865993 None:intergenic 35.0%
!! GTATTTTGGGGAGAAAAAGA+TGG + chr4_2:12865993-12866012 None:intergenic 35.0%
GAAATTGAATGAAAGGGTAG+GGG + chr4_2:12866015-12866034 None:intergenic 35.0%
GGAAATTGAATGAAAGGGTA+GGG + chr4_2:12866016-12866035 None:intergenic 35.0%
TGGAAATTGAATGAAAGGGT+AGG + chr4_2:12866017-12866036 None:intergenic 35.0%
TACGCCGTTTATGATAAGAA+CGG - chr4_2:12866212-12866231 Msa0589680:CDS 35.0%
CTCACCGTTCTTATCATAAA+CGG + chr4_2:12866219-12866238 None:intergenic 35.0%
TAATATTGCTGCTACTGTCT+CGG - chr4_2:12866262-12866281 Msa0589680:CDS 35.0%
!! ATTTCGGAGTTTTGTCATGA+TGG - chr4_2:12866769-12866788 Msa0589680:intron 35.0%
!! GAAGCTTTGGGATATAATTG+AGG - chr4_2:12866941-12866960 Msa0589680:intron 35.0%
!! AGCTTTGGGATATAATTGAG+GGG - chr4_2:12866943-12866962 Msa0589680:intron 35.0%
ACTCTCTCAAGGTTAAAGAA+AGG - chr4_2:12866970-12866989 Msa0589680:intron 35.0%
CTCTCTCAAGGTTAAAGAAA+GGG - chr4_2:12866971-12866990 Msa0589680:intron 35.0%
TATGAAGCACAAACTCAGAT+AGG - chr4_2:12867055-12867074 Msa0589680:intron 35.0%
GCATATATATTCCTCGGATT+AGG + chr4_2:12867197-12867216 None:intergenic 35.0%
CTTTCTTAGCCTAATTACAC+TGG + chr4_2:12867328-12867347 None:intergenic 35.0%
!! GAGTATTTAAGGCGCTTTTT+AGG - chr4_2:12867347-12867366 Msa0589680:intron 35.0%
!! TAAGGCGCTTTTTAGGAATA+AGG - chr4_2:12867354-12867373 Msa0589680:intron 35.0%
!! AAGGCGCTTTTTAGGAATAA+GGG - chr4_2:12867355-12867374 Msa0589680:intron 35.0%
TCTTCCTTTACTTCTCTACA+AGG - chr4_2:12867406-12867425 Msa0589680:intron 35.0%
CTTCCTTTACTTCTCTACAA+GGG - chr4_2:12867407-12867426 Msa0589680:intron 35.0%
TTACCCTTGTAGAGAAGTAA+AGG + chr4_2:12867413-12867432 None:intergenic 35.0%
TTACTTCTCTACAAGGGTAA+TGG - chr4_2:12867413-12867432 Msa0589680:intron 35.0%
AAGGAAAGGAAATAATTGGC+AGG - chr4_2:12867478-12867497 Msa0589680:intron 35.0%
! AATAATTGGCAGGTGGTTTT+AGG - chr4_2:12867488-12867507 Msa0589680:intron 35.0%
! GAAACATGGTTTCAAGTACT+AGG - chr4_2:12867622-12867641 Msa0589680:intron 35.0%
TTCAAGTACTAGGAAACAGA+AGG - chr4_2:12867632-12867651 Msa0589680:intron 35.0%
AGGTCTATATCATCATTACC+GGG - chr4_2:12867789-12867808 Msa0589680:intron 35.0%
AAAAGTGGCCTATATTACAG+GGG + chr4_2:12867931-12867950 None:intergenic 35.0%
CAAAAGTGGCCTATATTACA+GGG + chr4_2:12867932-12867951 None:intergenic 35.0%
!!! CTGTAATATAGGCCACTTTT+GGG - chr4_2:12867931-12867950 Msa0589680:intron 35.0%
!!! ATTTTTTTTTGGGGTACACG+TGG - chr4_2:12868115-12868134 Msa0589680:intron 35.0%
TCGGAATACACAAAAATTCC+TGG + chr4_2:12868831-12868850 None:intergenic 35.0%
! TTTTTGTGTATTCCGAGCTT+AGG - chr4_2:12868835-12868854 Msa0589680:intron 35.0%
CTTGTCATTCAACCGTATAA+CGG + chr4_2:12868904-12868923 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr4_2:12869224-12869243 Msa0589680:intron 35.0%
!!! TGGTCCCTTAAGTTACTTTT+TGG - chr4_2:12869284-12869303 Msa0589680:intron 35.0%
ACATTCATCCTATCGTAAAG+AGG + chr4_2:12869414-12869433 None:intergenic 35.0%
GGATGAATGTATTAGCGTTA+AGG - chr4_2:12869424-12869443 Msa0589680:intron 35.0%
!!! TGGTCCCTTAAGTTACTTTT+TGG + chr4_2:12869284-12869303 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr4_2:12869224-12869243 None:intergenic 35.0%
AAAAAATCAGAAATGCCACG+TGG - chr4_2:12869737-12869756 Msa0589680:intron 35.0%
ATAGATTCTGTTGAGTCACA+GGG - chr4_2:12869831-12869850 Msa0589680:intron 35.0%
!! CATGTAATATAGGGCACTTT+TGG + chr4_2:12869931-12869950 None:intergenic 35.0%
!! CAAAAGTGCCCTATATTACA+TGG - chr4_2:12869929-12869948 Msa0589680:intron 35.0%
CATGATTAACATTGGATAGG+GGG - chr4_2:12869992-12870011 Msa0589680:intron 35.0%
ATGATTAACATTGGATAGGG+GGG - chr4_2:12869993-12870012 Msa0589680:intron 35.0%
!! AGAATGGAATGGATTAAGAG+TGG - chr4_2:12870044-12870063 Msa0589680:intron 35.0%
! ATGGATTAAGAGTGGTGAAT+TGG - chr4_2:12870052-12870071 Msa0589680:intron 35.0%
TAAGAGTGGTGAATTGGAAT+TGG - chr4_2:12870058-12870077 Msa0589680:intron 35.0%
ATTTCATTGGGAAGAAGAGT+TGG - chr4_2:12870095-12870114 Msa0589680:intron 35.0%
! GAGCACCTTTATCTTTTCAA+AGG - chr4_2:12870193-12870212 Msa0589680:intron 35.0%
!!! TTCAAAGGTATTTTGAGTGG+AGG - chr4_2:12870208-12870227 Msa0589680:intron 35.0%
TTTCCAATGTCACGACTATT+TGG - chr4_2:12870266-12870285 Msa0589680:intron 35.0%
ATTCCAAATAGTCGTGACAT+TGG + chr4_2:12870272-12870291 None:intergenic 35.0%
! TCACGACTATTTGGAATACT+AGG - chr4_2:12870275-12870294 Msa0589680:intron 35.0%
!! TAGGCATGAAGGTTTTAATG+GGG - chr4_2:12870312-12870331 Msa0589680:intron 35.0%
ATTCTCAAGAGCAAGCTTAA+AGG - chr4_2:12870361-12870380 Msa0589680:intron 35.0%
TTAAACTCTGTGGCTTGATT+TGG - chr4_2:12870412-12870431 Msa0589680:intron 35.0%
! TTAATTCTTGCTGCCTTGTT+TGG - chr4_2:12870563-12870582 Msa0589680:intron 35.0%
GACTGAAAAACAACCAAACA+AGG + chr4_2:12870579-12870598 None:intergenic 35.0%
!! TGCTGTGATTGATTTTTCTG+TGG - chr4_2:12870802-12870821 Msa0589680:intron 35.0%
!! TGATTGATTTTTCTGTGGAG+TGG - chr4_2:12870807-12870826 Msa0589680:intron 35.0%
TCTTTCAACACTATTTCGCT+GGG + chr4_2:12870910-12870929 None:intergenic 35.0%
! AGCGAAATAGTGTTGAAAGA+GGG - chr4_2:12870910-12870929 Msa0589680:intron 35.0%
! CTGTAACCCACAATTTCTTT+TGG - chr4_2:12870938-12870957 Msa0589680:intron 35.0%
TATCCAAGAGTTACCATGTT+TGG - chr4_2:12871018-12871037 Msa0589680:intron 35.0%
TTTAGCCCAAACCATTGTTT+GGG + chr4_2:12871056-12871075 None:intergenic 35.0%
GAAGAACACATAAAGATCAG+TGG - chr4_2:12871440-12871459 Msa0589680:intron 35.0%
TAAGGTAGTTGCATTCATCA+AGG - chr4_2:12871610-12871629 Msa0589680:intron 35.0%
AAGGTAGTTGCATTCATCAA+GGG - chr4_2:12871611-12871630 Msa0589680:intron 35.0%
GGTAATAGGCATTCTTGAAA+AGG - chr4_2:12871670-12871689 Msa0589680:intron 35.0%
ATAGGCATTCTTGAAAAGGA+AGG - chr4_2:12871674-12871693 Msa0589680:intron 35.0%
GTAGAATGTGTGGAACATTA+AGG - chr4_2:12871945-12871964 Msa0589680:CDS 35.0%
CTCAACTGACCATTCATCAA+TGG - chr4_2:12865917-12865936 Msa0589680:three_prime_UTR 40.0%
!!! TGAAAGGGTAGGGGTATTTT+GGG + chr4_2:12866006-12866025 None:intergenic 40.0%
!!! ATGAAAGGGTAGGGGTATTT+TGG + chr4_2:12866007-12866026 None:intergenic 40.0%
GGGGTGGAAATTGAATGAAA+GGG + chr4_2:12866021-12866040 None:intergenic 40.0%
TGGGGTGGAAATTGAATGAA+AGG + chr4_2:12866022-12866041 None:intergenic 40.0%
ATCATAAACGGCGTAAACTC+CGG + chr4_2:12866207-12866226 None:intergenic 40.0%
TGTGGCATTAATGTAGCTTG+AGG - chr4_2:12866430-12866449 Msa0589680:CDS 40.0%
AGTTGCTCCCACAATGAAAT+TGG + chr4_2:12866814-12866833 None:intergenic 40.0%
AGAAAGGGTGATTCTTGCAT+AGG - chr4_2:12866986-12867005 Msa0589680:intron 40.0%
!! TCTCTACAAGGGTAATGGAA+AGG - chr4_2:12867418-12867437 Msa0589680:intron 40.0%
GAAAGGAAATAATTGGCAGG+TGG - chr4_2:12867481-12867500 Msa0589680:intron 40.0%
!! GAAACATTGGTTCAGTTTGG+TGG - chr4_2:12867757-12867776 Msa0589680:intron 40.0%
GGTCTATATCATCATTACCG+GGG - chr4_2:12867790-12867809 Msa0589680:intron 40.0%
! TAACTTTTGGACGGATCTGT+TGG - chr4_2:12867860-12867879 Msa0589680:intron 40.0%
! GCTTTTAGCCCCTGTAATAT+AGG - chr4_2:12867920-12867939 Msa0589680:intron 40.0%
CCAAAAGTGGCCTATATTAC+AGG + chr4_2:12867933-12867952 None:intergenic 40.0%
!! CCTGTAATATAGGCCACTTT+TGG - chr4_2:12867930-12867949 Msa0589680:intron 40.0%
!! AAAGATTCTGCTGACTCAAG+GGG + chr4_2:12868029-12868048 None:intergenic 40.0%
!! CAAAGATTCTGCTGACTCAA+GGG + chr4_2:12868030-12868049 None:intergenic 40.0%
!! TCAAAGATTCTGCTGACTCA+AGG + chr4_2:12868031-12868050 None:intergenic 40.0%
CTTGTCATTCAACCTAAGCT+CGG + chr4_2:12868850-12868869 None:intergenic 40.0%
TATCGTAAAGAGGACCAAAG+TGG + chr4_2:12869404-12869423 None:intergenic 40.0%
ACTTTGGTCCTCTTTACGAT+AGG - chr4_2:12869403-12869422 Msa0589680:intron 40.0%
TGTGTAAATGAATGTCCACG+TGG + chr4_2:12869755-12869774 None:intergenic 40.0%
TGGACATTCATTTACACACG+TGG - chr4_2:12869757-12869776 Msa0589680:intron 40.0%
ACTCAACAGAATCTATGAGG+TGG + chr4_2:12869827-12869846 None:intergenic 40.0%
GTGACTCAACAGAATCTATG+AGG + chr4_2:12869830-12869849 None:intergenic 40.0%
CATAGATTCTGTTGAGTCAC+AGG - chr4_2:12869830-12869849 Msa0589680:intron 40.0%
TAGATTCTGTTGAGTCACAG+GGG - chr4_2:12869832-12869851 Msa0589680:intron 40.0%
!! AGTTGGTGGAGGTATTTCAA+GGG - chr4_2:12870112-12870131 Msa0589680:intron 40.0%
!! TATTTCAAGGGCTAGCTGTA+GGG - chr4_2:12870124-12870143 Msa0589680:intron 40.0%
! CAAACTTTTCACGAACCTTC+CGG + chr4_2:12870234-12870253 None:intergenic 40.0%
TTGGAATACTAGGAATGCCA+CGG - chr4_2:12870285-12870304 Msa0589680:intron 40.0%
!! TGAAGGTTTTAATGGGGAGA+AGG - chr4_2:12870318-12870337 Msa0589680:intron 40.0%
!!! AGAAGGCGGAAATTTTAGCT+TGG - chr4_2:12870335-12870354 Msa0589680:intron 40.0%
!! TTAGCTTTTCGCTTAACCAG+TGG - chr4_2:12870386-12870405 Msa0589680:intron 40.0%
! GTGCAATTCTGTTTTGCAGT+CGG - chr4_2:12870654-12870673 Msa0589680:intron 40.0%
GTCGAATGTTTCTTGTGTAG+CGG - chr4_2:12870738-12870757 Msa0589680:intron 40.0%
TCAGCACAAAACTCTCAATC+AGG + chr4_2:12870779-12870798 None:intergenic 40.0%
!! TGTGGAGTGGCTTTTTAGTA+TGG - chr4_2:12870820-12870839 Msa0589680:intron 40.0%
CTCTTTCAACACTATTTCGC+TGG + chr4_2:12870911-12870930 None:intergenic 40.0%
! CAGCGAAATAGTGTTGAAAG+AGG - chr4_2:12870909-12870928 Msa0589680:intron 40.0%
CTCTTGGATAGATTCAAGTG+TGG + chr4_2:12871008-12871027 None:intergenic 40.0%
GAACCAAACATGGTAACTCT+TGG + chr4_2:12871024-12871043 None:intergenic 40.0%
!! ACCATGTTTGGTTCTCTGTT+TGG - chr4_2:12871030-12871049 Msa0589680:intron 40.0%
TTTGGCCCAAACAATGGTTT+GGG - chr4_2:12871048-12871067 Msa0589680:intron 40.0%
CTTTAGCCCAAACCATTGTT+TGG + chr4_2:12871057-12871076 None:intergenic 40.0%
! TACTATATAGGTTGGGGTAG+TGG - chr4_2:12871370-12871389 Msa0589680:intron 40.0%
! CTCTGAGAGAATCCACATAA+CGG + chr4_2:12871650-12871669 None:intergenic 40.0%
GTTATGTGGATTCTCTCAGA+GGG - chr4_2:12871649-12871668 Msa0589680:intron 40.0%
!! TTGAATGGTGAACTTGTTGG+TGG - chr4_2:12871800-12871819 Msa0589680:CDS 40.0%
TTGACCTCCATGTTTGAGAA+AGG - chr4_2:12871833-12871852 Msa0589680:CDS 40.0%
TTCACCTTTCTCAAACATGG+AGG + chr4_2:12871840-12871859 None:intergenic 40.0%
CACTTCACCTTTCTCAAACA+TGG + chr4_2:12871843-12871862 None:intergenic 40.0%
CATGTTTGAGAAAGGTGAAG+TGG - chr4_2:12871841-12871860 Msa0589680:CDS 40.0%
!! TTTGAAATGAGGGACTAGCT+AGG - chr4_2:12871921-12871940 Msa0589680:CDS 40.0%
GAGAAGCAACATAAGTCCAG+TGG + chr4_2:12865882-12865901 None:intergenic 45.0%
AGAGGAGTTGTGTAGAAGAG+AGG + chr4_2:12865956-12865975 None:intergenic 45.0%
!!! GAAAGGGTAGGGGTATTTTG+GGG + chr4_2:12866005-12866024 None:intergenic 45.0%
GGTAGGGTTTGAGGGAAATT+GGG + chr4_2:12866064-12866083 None:intergenic 45.0%
TGGTAGGGTTTGAGGGAAAT+TGG + chr4_2:12866065-12866084 None:intergenic 45.0%
AACGGTGAGCTTCAGTTCAT+CGG - chr4_2:12866230-12866249 Msa0589680:CDS 45.0%
TTAACAGAGCCACAAAGCTC+CGG + chr4_2:12866305-12866324 None:intergenic 45.0%
TGAGGGGATATACTCTCTCA+AGG - chr4_2:12866959-12866978 Msa0589680:intron 45.0%
GCACAAACTCAGATAGGAAC+AGG - chr4_2:12867061-12867080 Msa0589680:intron 45.0%
ACTCAGATAGGAACAGGACA+CGG - chr4_2:12867067-12867086 Msa0589680:intron 45.0%
!! ATAATGTGTCGGTGTCGTGT+TGG - chr4_2:12867137-12867156 Msa0589680:intron 45.0%
GCAACATGCTGAAGTGGAAT+TGG - chr4_2:12867381-12867400 Msa0589680:intron 45.0%
!! ACATTGGTTCAGTTTGGTGG+AGG - chr4_2:12867760-12867779 Msa0589680:intron 45.0%
!! CATTGGTTCAGTTTGGTGGA+GGG - chr4_2:12867761-12867780 Msa0589680:intron 45.0%
! CAGTTTGGTGGAGGGATTTA+AGG - chr4_2:12867769-12867788 Msa0589680:intron 45.0%
CTATATCATCATTACCGGGG+TGG - chr4_2:12867793-12867812 Msa0589680:intron 45.0%
AAATTTCTCTCGAACCACCC+CGG + chr4_2:12867810-12867829 None:intergenic 45.0%
!! AAGATTCTGCTGACTCAAGG+GGG + chr4_2:12868028-12868047 None:intergenic 45.0%
AGTCAGCAGAATCTTTGACG+TGG - chr4_2:12868033-12868052 Msa0589680:intron 45.0%
GCGTGACACGTCATCAAAAA+AGG + chr4_2:12868071-12868090 None:intergenic 45.0%
GTTGACGGAGGAAGAGTTAA+GGG + chr4_2:12869382-12869401 None:intergenic 45.0%
AAGAGGACCAAAGTGGTTGA+CGG + chr4_2:12869397-12869416 None:intergenic 45.0%
CTCTACAACCATGTCTGCAA+AGG + chr4_2:12870023-12870042 None:intergenic 45.0%
CTTTGCAGACATGGTTGTAG+AGG - chr4_2:12870021-12870040 Msa0589680:intron 45.0%
GACATGGTTGTAGAGGAGAA+TGG - chr4_2:12870028-12870047 Msa0589680:intron 45.0%
GGTTGTAGAGGAGAATGGAA+TGG - chr4_2:12870033-12870052 Msa0589680:intron 45.0%
GAGTGGTGAATTGGAATTGG+AGG - chr4_2:12870061-12870080 Msa0589680:intron 45.0%
TGGTGAATTGGAATTGGAGG+TGG - chr4_2:12870064-12870083 Msa0589680:intron 45.0%
TGAATTGGAATTGGAGGTGG+CGG - chr4_2:12870067-12870086 Msa0589680:intron 45.0%
! GTGGCGGAGACTATTTCATT+GGG - chr4_2:12870083-12870102 Msa0589680:intron 45.0%
TCATTGGGAAGAAGAGTTGG+TGG - chr4_2:12870098-12870117 Msa0589680:intron 45.0%
!! GAGTTGGTGGAGGTATTTCA+AGG - chr4_2:12870111-12870130 Msa0589680:intron 45.0%
!! GTATTTCAAGGGCTAGCTGT+AGG - chr4_2:12870123-12870142 Msa0589680:intron 45.0%
!! AAGGTATTTTGAGTGGAGGC+CGG - chr4_2:12870212-12870231 Msa0589680:intron 45.0%
!! AGGTTTTAATGGGGAGAAGG+CGG - chr4_2:12870321-12870340 Msa0589680:intron 45.0%
!!! AGGCGGAAATTTTAGCTTGG+AGG - chr4_2:12870338-12870357 Msa0589680:intron 45.0%
CCACAGAGTTTAAAAGCCAC+TGG + chr4_2:12870405-12870424 None:intergenic 45.0%
! CCAGTGGCTTTTAAACTCTG+TGG - chr4_2:12870402-12870421 Msa0589680:intron 45.0%
AGCAATACCAGAACACGCAA+GGG + chr4_2:12870456-12870475 None:intergenic 45.0%
AAGCAATACCAGAACACGCA+AGG + chr4_2:12870457-12870476 None:intergenic 45.0%
TTGCGTGTTCTGGTATTGCT+TGG - chr4_2:12870456-12870475 Msa0589680:intron 45.0%
TGTTCTGGTATTGCTTGGTC+AGG - chr4_2:12870461-12870480 Msa0589680:intron 45.0%
! TTGTTTGCTTGAGGGGGTAT+GGG - chr4_2:12870502-12870521 Msa0589680:intron 45.0%
CTGCAAGCAAAGCTGCAAAA+AGG + chr4_2:12870601-12870620 None:intergenic 45.0%
CTGCATCTTCATCTGTGCAT+TGG - chr4_2:12870621-12870640 Msa0589680:intron 45.0%
CATCTTCATCTGTGCATTGG+AGG - chr4_2:12870624-12870643 Msa0589680:intron 45.0%
! GTCGCAGCAGTTTCATTTTC+CGG - chr4_2:12870714-12870733 Msa0589680:intron 45.0%
! TCGCAGCAGTTTCATTTTCC+GGG - chr4_2:12870715-12870734 Msa0589680:intron 45.0%
ACACAAGAAACATTCGACCC+CGG + chr4_2:12870736-12870755 None:intergenic 45.0%
TTTCTTGTGTAGCGGTTCCA+GGG - chr4_2:12870746-12870765 Msa0589680:intron 45.0%
GTGTGGACAAACATAGAGCA+TGG + chr4_2:12870991-12871010 None:intergenic 45.0%
GCCAAACAGAGAACCAAACA+TGG + chr4_2:12871034-12871053 None:intergenic 45.0%
TCTCTGTTTGGCCCAAACAA+TGG - chr4_2:12871042-12871061 Msa0589680:intron 45.0%
GTTTGGCCCAAACAATGGTT+TGG - chr4_2:12871047-12871066 Msa0589680:intron 45.0%
TGGGTCAAAGATTCTCTGTC+AGG + chr4_2:12871401-12871420 None:intergenic 45.0%
GAGAATCTTTGACCCAAGCA+TGG - chr4_2:12871405-12871424 Msa0589680:intron 45.0%
CATCCAAGACTTCCATGCTT+GGG + chr4_2:12871420-12871439 None:intergenic 45.0%
GTTCCACCTGGAAATGAATC+CGG - chr4_2:12871467-12871486 Msa0589680:intron 45.0%
TTTCCGGATTCATTTCCAGG+TGG + chr4_2:12871473-12871492 None:intergenic 45.0%
AAGACCACAGCCTAAGAAGA+AGG - chr4_2:12871505-12871524 Msa0589680:intron 45.0%
CGAAGATCAGCCTTCTTCTT+AGG + chr4_2:12871518-12871537 None:intergenic 45.0%
GCTGATCTTCGATTAACACC+TGG - chr4_2:12871527-12871546 Msa0589680:intron 45.0%
CGTTATGTGGATTCTCTCAG+AGG - chr4_2:12871648-12871667 Msa0589680:intron 45.0%
GGATTCTCTCAGAGGGTAAT+AGG - chr4_2:12871656-12871675 Msa0589680:intron 45.0%
TTTGAGAAAGGTGAAGTGGC+TGG - chr4_2:12871845-12871864 Msa0589680:CDS 45.0%
GCCTAAAAATGCAGGTTCAC+CGG + chr4_2:12871896-12871915 None:intergenic 45.0%
CTAGCTAGGAGTAGAATGTG+TGG - chr4_2:12871935-12871954 Msa0589680:CDS 45.0%
!!! TTATTTTATATTTTTTTTTG+GGG - chr4_2:12868106-12868125 Msa0589680:intron 5.0%
!! TTTAAAAAATTAAAAAATTC+TGG - chr4_2:12868148-12868167 Msa0589680:intron 5.0%
!! TGAAAAAAATTTAAAAAATA+CGG - chr4_2:12868304-12868323 Msa0589680:intron 5.0%
!!! ATGAAATTTTTTAAAAAAAT+TGG + chr4_2:12869109-12869128 None:intergenic 5.0%
!!! TAATTATATGTATATTTTAT+TGG - chr4_2:12872039-12872058 Msa0589680:CDS 5.0%
GTAGGTTTGTGGAGGAGTTG+GGG + chr4_2:12866040-12866059 None:intergenic 50.0%
CGTAGGTTTGTGGAGGAGTT+GGG + chr4_2:12866041-12866060 None:intergenic 50.0%
AATTGGGCGTAGGTTTGTGG+AGG + chr4_2:12866048-12866067 None:intergenic 50.0%
GGAAATTGGGCGTAGGTTTG+TGG + chr4_2:12866051-12866070 None:intergenic 50.0%
GTTTGAGGGAAATTGGGCGT+AGG + chr4_2:12866058-12866077 None:intergenic 50.0%
AAACCTCGCCGATACTTCAC+CGG - chr4_2:12866127-12866146 Msa0589680:three_prime_UTR 50.0%
! CCGGTGACTTCATCGTTTTC+CGG + chr4_2:12866164-12866183 None:intergenic 50.0%
CCGGAAAACGATGAAGTCAC+CGG - chr4_2:12866161-12866180 Msa0589680:exon 50.0%
! GGAGCTTTGTGGCTCTGTTA+AGG - chr4_2:12866304-12866323 Msa0589680:CDS 50.0%
GGGAAAGCAACATGCTGAAG+TGG - chr4_2:12867375-12867394 Msa0589680:intron 50.0%
! TGGACGGATCTGTTGGTTGA+TGG - chr4_2:12867867-12867886 Msa0589680:intron 50.0%
ACAGGGGCTAAACCCAAAAG+TGG + chr4_2:12867946-12867965 None:intergenic 50.0%
GGTTGACGGAGGAAGAGTTA+AGG + chr4_2:12869383-12869402 None:intergenic 50.0%
TCTTCCTCCGTCAACCACTT+TGG - chr4_2:12869387-12869406 Msa0589680:intron 50.0%
!! GGTGGCGGAGACTATTTCAT+TGG - chr4_2:12870082-12870101 Msa0589680:intron 50.0%
!! TTGGGAAGAAGAGTTGGTGG+AGG - chr4_2:12870101-12870120 Msa0589680:intron 50.0%
!! TATTTTGAGTGGAGGCCGGA+AGG - chr4_2:12870216-12870235 Msa0589680:intron 50.0%
! CTAGGAATGCCACGGCTTTT+AGG - chr4_2:12870293-12870312 Msa0589680:intron 50.0%
ACCTTCATGCCTAAAAGCCG+TGG + chr4_2:12870305-12870324 None:intergenic 50.0%
!! TGGCTTGATTTGGAGCAAGC+AGG - chr4_2:12870422-12870441 Msa0589680:intron 50.0%
!! GGCTTGATTTGGAGCAAGCA+GGG - chr4_2:12870423-12870442 Msa0589680:intron 50.0%
AGTTAAGCCCTTGCGTGTTC+TGG - chr4_2:12870446-12870465 Msa0589680:intron 50.0%
TGTCCCTGCTTGTTTGCTTG+AGG - chr4_2:12870493-12870512 Msa0589680:intron 50.0%
GTCCCTGCTTGTTTGCTTGA+GGG - chr4_2:12870494-12870513 Msa0589680:intron 50.0%
TCCCTGCTTGTTTGCTTGAG+GGG - chr4_2:12870495-12870514 Msa0589680:intron 50.0%
CTTGTTTGCTTGAGGGGGTA+TGG - chr4_2:12870501-12870520 Msa0589680:intron 50.0%
GAGATAGTGCGAGGTTAGCA+GGG - chr4_2:12870533-12870552 Msa0589680:intron 50.0%
AGATAGTGCGAGGTTAGCAG+GGG - chr4_2:12870534-12870553 Msa0589680:intron 50.0%
! CGCAGCAGTTTCATTTTCCG+GGG - chr4_2:12870716-12870735 Msa0589680:intron 50.0%
GTTTCTTGTGTAGCGGTTCC+AGG - chr4_2:12870745-12870764 Msa0589680:intron 50.0%
CTCAATCAGGTCAAGATCCC+TGG + chr4_2:12870766-12870785 None:intergenic 50.0%
TGACCCAAGCATGGAAGTCT+TGG - chr4_2:12871414-12871433 Msa0589680:intron 50.0%
CCATCCAAGACTTCCATGCT+TGG + chr4_2:12871421-12871440 None:intergenic 50.0%
CCAAGCATGGAAGTCTTGGA+TGG - chr4_2:12871418-12871437 Msa0589680:intron 50.0%
ATCAGTGGGAAAGTTCCACC+TGG - chr4_2:12871455-12871474 Msa0589680:intron 50.0%
GCGTTTCCGGATTCATTTCC+AGG + chr4_2:12871476-12871495 None:intergenic 50.0%
ATGAATCCGGAAACGCCACT+TGG - chr4_2:12871480-12871499 Msa0589680:intron 50.0%
TGAATCCGGAAACGCCACTT+GGG - chr4_2:12871481-12871500 Msa0589680:intron 50.0%
TCTTACCCAAGTGGCGTTTC+CGG + chr4_2:12871489-12871508 None:intergenic 50.0%
TCAGCCTTCTTCTTAGGCTG+TGG + chr4_2:12871512-12871531 None:intergenic 50.0%
TGTCCACGAGCTCTTCAAGA+GGG + chr4_2:12871574-12871593 None:intergenic 50.0%
TTGTCCACGAGCTCTTCAAG+AGG + chr4_2:12871575-12871594 None:intergenic 50.0%
TGAAGAGCTCGTGGACAAGT+TGG - chr4_2:12871577-12871596 Msa0589680:intron 50.0%
! GCCGGTGAACCTGCATTTTT+AGG - chr4_2:12871892-12871911 Msa0589680:CDS 50.0%
GCGTAGGTTTGTGGAGGAGT+TGG + chr4_2:12866042-12866061 None:intergenic 55.0%
TCGGGGATGGTAGGGTTTGA+GGG + chr4_2:12866072-12866091 None:intergenic 55.0%
TTCGGGGATGGTAGGGTTTG+AGG + chr4_2:12866073-12866092 None:intergenic 55.0%
TGTGGCTTTCGGGGATGGTA+GGG + chr4_2:12866080-12866099 None:intergenic 55.0%
ATGACTGTGGCTTTCGGGGA+TGG + chr4_2:12866085-12866104 None:intergenic 55.0%
ATCCCCGAAAGCCACAGTCA+TGG - chr4_2:12866084-12866103 Msa0589680:three_prime_UTR 55.0%
AGCCATGACTGTGGCTTTCG+GGG + chr4_2:12866089-12866108 None:intergenic 55.0%
GAGCCATGACTGTGGCTTTC+GGG + chr4_2:12866090-12866109 None:intergenic 55.0%
CGAGCCATGACTGTGGCTTT+CGG + chr4_2:12866091-12866110 None:intergenic 55.0%
! GGCGAGGTTTTTCACTGCCA+TGG + chr4_2:12866117-12866136 None:intergenic 55.0%
CACCGTCACCGGTGAAGTAT+CGG + chr4_2:12866138-12866157 None:intergenic 55.0%
! TTTTCCGGTGACACCGTCAC+CGG + chr4_2:12866149-12866168 None:intergenic 55.0%
CACCGGAGAAGAACTTCCGT+CGG - chr4_2:12866178-12866197 Msa0589680:CDS 55.0%
ACCGGAGAAGAACTTCCGTC+GGG - chr4_2:12866179-12866198 Msa0589680:CDS 55.0%
ACCCGACGGAAGTTCTTCTC+CGG + chr4_2:12866183-12866202 None:intergenic 55.0%
!! AAAGCTCCGGCACCGATTTC+CGG + chr4_2:12866292-12866311 None:intergenic 55.0%
!! AAATCGGTGCCGGAGCTTTG+TGG - chr4_2:12866293-12866312 Msa0589680:CDS 55.0%
!! TGTCGGTGTCGTGTTGGTGT+GGG - chr4_2:12867143-12867162 Msa0589680:intron 55.0%
!! TTCCTCGGATTAGGGGTGTC+CGG + chr4_2:12867188-12867207 None:intergenic 55.0%
AGGACCAAAGTGGTTGACGG+AGG + chr4_2:12869394-12869413 None:intergenic 55.0%
TCTGTTGAGTCACAGGGGTC+AGG - chr4_2:12869837-12869856 Msa0589680:intron 55.0%
CTGTTGAGTCACAGGGGTCA+GGG - chr4_2:12869838-12869857 Msa0589680:intron 55.0%
TGTTGAGTCACAGGGGTCAG+GGG - chr4_2:12869839-12869858 Msa0589680:intron 55.0%
GGGGATCTCCTTTGCAGACA+TGG - chr4_2:12870012-12870031 Msa0589680:intron 55.0%
!! TTCAAGGGCTAGCTGTAGGG+AGG - chr4_2:12870127-12870146 Msa0589680:intron 55.0%
!! TCAAGGGCTAGCTGTAGGGA+GGG - chr4_2:12870128-12870147 Msa0589680:intron 55.0%
GGAGAATGGCAGAAGGGAGT+GGG - chr4_2:12870151-12870170 Msa0589680:intron 55.0%
GAGAATGGCAGAAGGGAGTG+GGG - chr4_2:12870152-12870171 Msa0589680:intron 55.0%
! GCCACGGCTTTTAGGCATGA+AGG - chr4_2:12870301-12870320 Msa0589680:intron 55.0%
GGTATTGCTTGGTCAGGTGC+TGG - chr4_2:12870467-12870486 Msa0589680:intron 55.0%
CCCCCTCAAGCAAACAAGCA+GGG + chr4_2:12870499-12870518 None:intergenic 55.0%
CCCTGCTTGTTTGCTTGAGG+GGG - chr4_2:12870496-12870515 Msa0589680:intron 55.0%
ACCCCCTCAAGCAAACAAGC+AGG + chr4_2:12870500-12870519 None:intergenic 55.0%
! TTGCTTGAGGGGGTATGGGT+TGG - chr4_2:12870506-12870525 Msa0589680:intron 55.0%
CGAGATAGTGCGAGGTTAGC+AGG - chr4_2:12870532-12870551 Msa0589680:intron 55.0%
! CTGTTTTGCAGTCGGTGTGC+TGG - chr4_2:12870662-12870681 Msa0589680:intron 55.0%
! AGGCTGTGGTCTTACCCAAG+TGG + chr4_2:12871498-12871517 None:intergenic 55.0%
GTTAGTTGCACGTGACGACC+AGG + chr4_2:12871548-12871567 None:intergenic 55.0%
CACGAGCTCTTCAAGAGGGA+CGG + chr4_2:12871570-12871589 None:intergenic 55.0%
! TCCAGAAGTGCGCCGTTATG+TGG - chr4_2:12871635-12871654 Msa0589680:intron 55.0%
TCCACATAACGGCGCACTTC+TGG + chr4_2:12871639-12871658 None:intergenic 55.0%
GGTTTGTGGAGGAGTTGGGG+TGG + chr4_2:12866037-12866056 None:intergenic 60.0%
CTGTGGCTTTCGGGGATGGT+AGG + chr4_2:12866081-12866100 None:intergenic 60.0%
ATGGCGACGAGCCATGACTG+TGG + chr4_2:12866098-12866117 None:intergenic 60.0%
ACAGTCATGGCTCGTCGCCA+TGG - chr4_2:12866097-12866116 Msa0589680:three_prime_UTR 60.0%
!! TCACCGGTGAAGTATCGGCG+AGG + chr4_2:12866133-12866152 None:intergenic 60.0%
CGCCGATACTTCACCGGTGA+CGG - chr4_2:12866133-12866152 Msa0589680:three_prime_UTR 60.0%
!! TTCACCGGTGACGGTGTCAC+CGG - chr4_2:12866142-12866161 Msa0589680:three_prime_UTR 60.0%
GAAGAACTTCCGTCGGGTGC+CGG - chr4_2:12866185-12866204 Msa0589680:CDS 60.0%
TGTCTCGGCGCACCGGAAAT+CGG - chr4_2:12866277-12866296 Msa0589680:CDS 60.0%
!! GTGTCGGTGTCGTGTTGGTG+TGG - chr4_2:12867142-12867161 Msa0589680:intron 60.0%
!! TGCTGACTCAAGGGGGTCAG+GGG + chr4_2:12868021-12868040 None:intergenic 60.0%
!! CTGCTGACTCAAGGGGGTCA+GGG + chr4_2:12868022-12868041 None:intergenic 60.0%
!! TCTGCTGACTCAAGGGGGTC+AGG + chr4_2:12868023-12868042 None:intergenic 60.0%
!! TCTATGAGGTGGCGCTGACG+TGG + chr4_2:12869816-12869835 None:intergenic 60.0%
!! CAAGGGCTAGCTGTAGGGAG+GGG - chr4_2:12870129-12870148 Msa0589680:intron 60.0%
!! AAGGGCTAGCTGTAGGGAGG+GGG - chr4_2:12870130-12870149 Msa0589680:intron 60.0%
AGCTGTAGGGAGGGGGAGAA+TGG - chr4_2:12870137-12870156 Msa0589680:intron 60.0%
GGAGGGGGAGAATGGCAGAA+GGG - chr4_2:12870145-12870164 Msa0589680:intron 60.0%
GGGAGAATGGCAGAAGGGAG+TGG - chr4_2:12870150-12870169 Msa0589680:intron 60.0%
AATGGCAGAAGGGAGTGGGG+AGG - chr4_2:12870155-12870174 Msa0589680:intron 60.0%
!! CTTGAGGGGGTATGGGTTGG+AGG - chr4_2:12870509-12870528 Msa0589680:intron 60.0%
GTTGGAGGCGAGATAGTGCG+AGG - chr4_2:12870524-12870543 Msa0589680:intron 60.0%
CGTCCCTCTTGAAGAGCTCG+TGG - chr4_2:12871568-12871587 Msa0589680:intron 60.0%
GCGTAAACTCCGGCACCCGA+CGG + chr4_2:12866197-12866216 None:intergenic 65.0%
CTGCTACTGTCTCGGCGCAC+CGG - chr4_2:12866270-12866289 Msa0589680:CDS 65.0%
CACCGGACACCCCTAATCCG+AGG - chr4_2:12867183-12867202 Msa0589680:intron 65.0%
GGGAGGGGGAGAATGGCAGA+AGG - chr4_2:12870144-12870163 Msa0589680:intron 65.0%
GCAGAAGGGAGTGGGGAGGA+GGG - chr4_2:12870159-12870178 Msa0589680:intron 65.0%
GTGCGAGGTTAGCAGGGGCT+TGG - chr4_2:12870539-12870558 Msa0589680:intron 65.0%
GGCGCACCGGAAATCGGTGC+CGG - chr4_2:12866283-12866302 Msa0589680:CDS 70.0%
GGCAGAAGGGAGTGGGGAGG+AGG - chr4_2:12870158-12870177 Msa0589680:intron 70.0%
AGGGAGTGGGGAGGAGGGAG+CGG - chr4_2:12870164-12870183 Msa0589680:intron 70.0%
GGGAGTGGGGAGGAGGGAGC+GGG - chr4_2:12870165-12870184 Msa0589680:intron 75.0%
GGAGTGGGGAGGAGGGAGCG+GGG - chr4_2:12870166-12870185 Msa0589680:intron 75.0%
GAGTGGGGAGGAGGGAGCGG+GGG - chr4_2:12870167-12870186 Msa0589680:intron 75.0%
! GGGGAGGAGGGAGCGGGGGC+TGG - chr4_2:12870171-12870190 Msa0589680:intron 85.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 12865872 12872174 12865872 ID=Msa0589680;Name=Msa0589680
chr4_2 mRNA 12865872 12872174 12865872 ID=Msa0589680-mRNA-1;Parent=Msa0589680;Name=Msa0589680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=64|1|1|1|0|1|2|291|297
chr4_2 exon 12865872 12866666 12865872 ID=Msa0589680-mRNA-1:exon:3743;Parent=Msa0589680-mRNA-1
chr4_2 exon 12871721 12872174 12871721 ID=Msa0589680-mRNA-1:exon:3742;Parent=Msa0589680-mRNA-1
chr4_2 five_prime_UTR 12872111 12872174 12872111 ID=Msa0589680-mRNA-1:five_prime_utr;Parent=Msa0589680-mRNA-1
chr4_2 CDS 12871721 12872110 12871721 ID=Msa0589680-mRNA-1:cds;Parent=Msa0589680-mRNA-1
chr4_2 CDS 12866163 12866666 12866163 ID=Msa0589680-mRNA-1:cds;Parent=Msa0589680-mRNA-1
chr4_2 three_prime_UTR 12865872 12866162 12865872 ID=Msa0589680-mRNA-1:three_prime_utr;Parent=Msa0589680-mRNA-1
Gene Sequence

>Msa0589680

ATGGCTAACATCATCAACCTCTCTTCTACACAACTCCTCTCTTATCATCATTTCCCATCTTTTTCTCCCCAAAATACCCCTACCCTTTCATTCAATTTCCACCCCAACTCCTCCACAAACCTACGCCCAATTTCCCTCAAACCCTACCATCCCCGAAAGCCACAGTCATGGCTCGTCGCCATGGCAGTGAAAAACCTCGCCGATACTTCACCGGTGACGGTGTCACCGGAAAACGATGAAGTCACCGGAGAAGAACTTCCGTCGGGTGCCGGAGTTTACGCCGTTTATGATAAGAACGGTGAGCTTCAGTTCATCGGTTTGTCGCGTAATATTGCTGCTACTGTCTCGGCGCACCGGAAATCGGTGCCGGAGCTTTGTGGCTCTGTTAAGGTTGGGGTAGTGGATGAACCTGACAGAGAATCTTTGACCCAAGCATGGAAGTCTTGGATGGAAGAACACATAAAGATCAGTGGGAAAGTTCCACCTGGAAATGAATCCGGAAACGCCACTTGGGTAAGACCACAGCCTAAGAAGAAGGCTGATCTTCGATTAACACCTGGTCGTCACGTGCAACTAACCGTCCCTCTTGAAGAGCTCGTGGACAAGTTGGTAAAAGAGAATAAGGTAGTTGCATTCATCAAGGGATCCAGAAGTGCGCCGTTATGTGGATTCTCTCAGAGGGTAATAGGCATTCTTGAAAAGGAAGGAGTAGATTATGAGAGTGTAGATGTATTGGATGAAGATTATAACTATGGATTGAGGGAGACACTTAAAAAGTATAGCAATTGGCCTACATTCCCTCAGATATTTTTGAATGGTGAACTTGTTGGTGGTTGTGATATATTGACCTCCATGTTTGAGAAAGGTGAAGTGGCTGGTTTGTTCAAAAAGTAA

Protein sequence

>Msa0589680

MANIINLSSTQLLSYHHFPSFSPQNTPTLSFNFHPNSSTNLRPISLKPYHPRKPQSWLVAMAVKNLADTSPVTVSPENDEVTGEELPSGAGVYAVYDKNGELQFIGLSRNIAATVSAHRKSVPELCGSVKVGVVDEPDRESLTQAWKSWMEEHIKISGKVPPGNESGNATWVRPQPKKKADLRLTPGRHVQLTVPLEELVDKLVKENKVVAFIKGSRSAPLCGFSQRVIGILEKEGVDYESVDVLDEDYNYGLRETLKKYSNWPTFPQIFLNGELVGGCDILTSMFEKGEVAGLFKK*