AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1456170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456170 MtrunA17_Chr4g0042701 97.755 490 11 0 1 490 1 490 0.0 988
Msa1456170 MtrunA17_Chr3g0120751 26.797 459 291 20 37 473 43 478 2.65e-25 108
Msa1456170 MtrunA17_Chr7g0246961 29.412 323 150 13 55 311 8 318 3.77e-15 77.8
Msa1456170 MtrunA17_Chr1g0188461 30.052 193 121 6 60 244 11 197 5.32e-13 71.2
Msa1456170 MtrunA17_Chr6g0459101 24.171 422 261 17 61 446 73 471 2.74e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456170 AT1G14030.1 64.069 462 157 3 23 483 24 477 0.0 609
Msa1456170 AT3G07670.1 29.618 314 197 13 44 346 63 363 1.16e-22 101
Msa1456170 AT4G20130.1 25.814 430 234 17 80 470 99 482 6.37e-18 86.7
Msa1456170 AT3G07670.2 31.441 229 137 10 126 346 9 225 9.95e-18 85.1
Msa1456170 AT3G55080.1 25.070 355 228 12 4 349 2 327 5.70e-17 83.6
Msa1456170 AT4G20130.3 25.779 353 195 12 139 470 57 363 5.72e-15 76.6
Msa1456170 AT4G20130.2 25.779 353 195 12 139 470 57 363 5.72e-15 76.6
Msa1456170 AT5G14260.2 25.575 391 239 15 85 445 115 483 2.34e-12 69.7
Msa1456170 AT5G14260.3 25.575 391 239 15 85 445 115 483 2.34e-12 69.7
Msa1456170 AT5G14260.1 25.575 391 239 15 85 445 115 483 2.34e-12 69.7
Msa1456170 AT3G55080.3 24.615 260 172 9 97 349 1 243 3.76e-12 68.2
Msa1456170 AT3G55080.5 24.615 260 172 9 97 349 1 243 3.76e-12 68.2
Msa1456170 AT3G55080.2 24.664 223 151 7 133 349 6 217 1.04e-11 66.6
Msa1456170 AT3G55080.4 24.664 223 146 7 133 349 6 212 2.25e-11 65.9

Find 169 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCATCGTCCCCTTTAA+AGG 0.157833 tig0036981:-22559 Msa1456180:three_prime_UTR
TTATACAACTATACTGAATT+TGG 0.182459 tig0036981:+22780 Msa1456170:three_prime_UTR
TGACACTGGATGACTTCTTC+TGG 0.230073 tig0036981:+20583 Msa1456170:CDS
GGGTACCGATGCTTTCTTAT+TGG 0.244903 tig0036981:+21811 Msa1456170:CDS
TGCATTCAATCAACCTTTAA+AGG 0.269412 tig0036981:+22546 Msa1456170:three_prime_UTR
AGATTGCTCTTGCATACTTA+TGG 0.269547 tig0036981:+22958 Msa1456170:three_prime_UTR
ACTACTAACCTTGAAGTTCT+TGG 0.282877 tig0036981:-20326 None:intergenic
GATGACTTCTTCTGGGCATT+TGG 0.290567 tig0036981:+20591 Msa1456170:CDS
CTCCAGCAGTTCAAACCTTC+TGG 0.294167 tig0036981:+19878 Msa1456170:CDS
CAAAATACTTCTAATCTTGC+AGG 0.301113 tig0036981:+22415 Msa1456170:exon
ACCAGCAAGGGCGGATTTGC+AGG 0.304466 tig0036981:-21924 Msa1456180:three_prime_UTR
TTGCTTGATATGCATCAAAA+TGG 0.313563 tig0036981:-23222 Msa1456180:CDS
CATCTTTGCAAGCCTCTATA+TGG 0.317158 tig0036981:+22835 Msa1456170:three_prime_UTR
GGATTTATCCACAACCTCTT+AGG 0.337946 tig0036981:-20024 None:intergenic
GCAGAGTTGGCTCTGGACTA+TGG 0.343115 tig0036981:+21596 Msa1456170:CDS
ATGCAAGAGCAATCTGAAAA+TGG 0.345318 tig0036981:-22950 Msa1456180:three_prime_UTR
TTCCAGAAGGTTTGAACTGC+TGG 0.346946 tig0036981:-19880 None:intergenic
GCCTGCAAATCCGCCCTTGC+TGG 0.360260 tig0036981:+21923 Msa1456170:CDS
TAGAAATAATCCTCCTCCTT+TGG 0.360561 tig0036981:+23105 Msa1456170:three_prime_UTR
TAGCGCTCATGCAGGTATTC+CGG 0.363730 tig0036981:-23288 Msa1456180:intron
AACAACAGTATGTCATTAAC+TGG 0.364991 tig0036981:-22449 Msa1456180:three_prime_UTR
CACTGTTCAGAGACTCCATC+TGG 0.373117 tig0036981:+21837 Msa1456170:CDS
GCATTCAATCAACCTTTAAA+GGG 0.374835 tig0036981:+22547 Msa1456170:three_prime_UTR
TGCTCTTGCATACTTATGGT+TGG 0.387006 tig0036981:+22962 Msa1456170:three_prime_UTR
GATCTTCGAGCAGAAAGAAT+TGG 0.388839 tig0036981:+22305 Msa1456170:CDS
GCTCTTGCATACTTATGGTT+GGG 0.392646 tig0036981:+22963 Msa1456170:three_prime_UTR
AAACTGATTCTACAATATAT+TGG 0.395083 tig0036981:+20184 Msa1456170:CDS
TCACATGCGTTCACCGTAGA+AGG 0.396385 tig0036981:-22523 Msa1456180:three_prime_UTR
TTCTGTCAAGGCAGGAGAAC+AGG 0.398267 tig0036981:+21204 Msa1456170:CDS
GCAACCAATCCTAAACCTTC+TGG 0.402948 tig0036981:-19961 None:intergenic
CCATCTTATTGGACCGGAAA+AGG 0.405140 tig0036981:-23254 Msa1456180:CDS
ACAAGCTGCAGGCATGTAAT+GGG 0.405918 tig0036981:-22610 Msa1456180:three_prime_UTR
CTCAAGGATCTTGGACTTTG+CGG 0.406199 tig0036981:+22363 Msa1456170:CDS
GAAAGGAGGCTCAAGGATCT+TGG 0.407166 tig0036981:+22354 Msa1456170:CDS
GAAGAATGAATGTCTGAAAC+TGG 0.408078 tig0036981:+20515 Msa1456170:CDS
TATGCATATCGATCTGCATT+TGG 0.408825 tig0036981:-21629 Msa1456180:three_prime_UTR
GCTGTTGCTGCTTCAGAGAT+AGG 0.410978 tig0036981:+20051 Msa1456170:CDS
TTCTCCTGCCTTGACAGAAA+GGG 0.411526 tig0036981:-21200 Msa1456180:three_prime_UTR
TACAAGCTGCAGGCATGTAA+TGG 0.411895 tig0036981:-22611 Msa1456180:three_prime_UTR
GCTACTGATTTGACAGAGAA+AGG 0.414228 tig0036981:-19829 None:intergenic
CTGAAAATGGCTCCTTCCCT+CGG 0.419876 tig0036981:-22937 Msa1456180:three_prime_UTR
GACACTGGATGACTTCTTCT+GGG 0.421868 tig0036981:+20584 Msa1456170:CDS
ACTAGCTTTCACTGGTGTCT+TGG 0.428693 tig0036981:-19932 None:intergenic
AGTGCTACTAATCTCAGATA+TGG 0.428804 tig0036981:-21785 Msa1456180:three_prime_UTR
TCTGAAGCAGCAACAGCATC+AGG 0.439199 tig0036981:-20045 None:intergenic
TTTCTTGATAATATTCCAAC+TGG 0.444121 tig0036981:-22335 Msa1456180:three_prime_UTR
TGTGATTCCACTTGCAGACT+TGG 0.445510 tig0036981:+20662 Msa1456170:CDS
TGTTGTTTCTTATTAGAGAA+AGG 0.454728 tig0036981:+20112 Msa1456170:CDS
GGTCAAGAGAGGATTCTGTT+TGG 0.455743 tig0036981:+20133 Msa1456170:CDS
AAAAGTCCATCTTATTGGAC+CGG 0.458534 tig0036981:-23260 Msa1456180:CDS
ATAGTTTATTACCTGTTCAA+TGG 0.458942 tig0036981:-21957 Msa1456180:intron
TGCAGGTGCCTAAGAGGTTG+TGG 0.460079 tig0036981:+20016 Msa1456170:CDS
CATTTGGAATTCTCAGATCA+AGG 0.465096 tig0036981:+20607 Msa1456170:CDS
GTTCTCCTGCCTTGACAGAA+AGG 0.468467 tig0036981:-21201 Msa1456180:three_prime_UTR
CTTACTTGAGTAGAGTTATG+AGG 0.468781 tig0036981:+23027 Msa1456170:three_prime_UTR
CAGATGAAGAGTTGGTACTT+TGG 0.474930 tig0036981:-19800 None:intergenic
AGATATGGAAGCATCCCTTC+TGG 0.477120 tig0036981:-21770 Msa1456180:three_prime_UTR
CTCCTCATTATCACGGCTCA+TGG 0.477204 tig0036981:-21876 Msa1456180:three_prime_UTR
AAGCAATGCAGAGTTGGCTC+TGG 0.478444 tig0036981:+21589 Msa1456170:CDS
CTCCATCTGGGGTCATCTTG+AGG 0.481584 tig0036981:+21850 Msa1456170:CDS
GAAATATATGTTCCATATAG+AGG 0.482623 tig0036981:-22847 Msa1456180:three_prime_UTR
AAGAGGCAAATCTAGATTCA+AGG 0.484970 tig0036981:+22223 Msa1456170:CDS
AAGAAGTCATCCAGTGTCAC+AGG 0.486528 tig0036981:-20579 None:intergenic
GAAGAGCTCCAAGAACTTCA+AGG 0.489004 tig0036981:+20318 Msa1456170:CDS
GGTACCACACTAGCTTTCAC+TGG 0.496675 tig0036981:-19940 None:intergenic
TCTGTTTGGAAGCATTACTT+TGG 0.496732 tig0036981:+20147 Msa1456170:CDS
ACAACTATACTGAATTTGGT+GGG 0.497845 tig0036981:+22784 Msa1456170:three_prime_UTR
GGGATTACCTATTTGCCCTA+AGG 0.498091 tig0036981:+21173 Msa1456170:CDS
AAACAAAAGCAATGCAGAGT+TGG 0.498255 tig0036981:+21583 Msa1456170:CDS
TTATCACACAACCATTGAAC+AGG 0.500689 tig0036981:+21946 Msa1456170:CDS
CAGTTCAAACCTTCTGGAAG+TGG 0.501931 tig0036981:+19884 Msa1456170:CDS
ACAGGTTCACGAAAAGAGAA+TGG 0.506682 tig0036981:-23163 Msa1456180:CDS
CATGCCTGCAGCTTGTAAAG+TGG 0.508006 tig0036981:+22617 Msa1456170:three_prime_UTR
AGTGTGGTACCAGAAGGTTT+AGG 0.510846 tig0036981:+19952 Msa1456170:CDS
TATGCATACACCTTGACACT+GGG 0.512341 tig0036981:+21644 Msa1456170:CDS
TTACTTTGGTATTCTGCCAC+AGG 0.513694 tig0036981:+20161 Msa1456170:CDS
TACAACTATACTGAATTTGG+TGG 0.513828 tig0036981:+22783 Msa1456170:three_prime_UTR
TCATCCAGTGTCACAGGAGA+AGG 0.518798 tig0036981:-20573 None:intergenic
GGTTTCTTCAGATGAAGAGT+TGG 0.524401 tig0036981:-19808 None:intergenic
CTGTTGCTGCTTCAGAGATA+GGG 0.524576 tig0036981:+20052 Msa1456170:CDS
TGGGTTGTAATAATTGTGGC+CGG 0.524912 tig0036981:-22591 Msa1456180:three_prime_UTR
GCATCTACAAACTCATTCCA+TGG 0.525256 tig0036981:+23192 Msa1456170:three_prime_UTR
GGAAGCATCCCTTCTGGAAG+AGG 0.525978 tig0036981:-21764 Msa1456180:three_prime_UTR
GCCCATGAGCCGTGATAATG+AGG 0.527832 tig0036981:+21874 Msa1456170:CDS
TGAAAATGGCTCCTTCCCTC+GGG 0.528010 tig0036981:-22936 Msa1456180:three_prime_UTR
ATCTGAGATTAGTAGCACTA+GGG 0.531413 tig0036981:+21789 Msa1456170:CDS
TCTCCTGCCTTGACAGAAAG+GGG 0.533728 tig0036981:-21199 Msa1456180:three_prime_UTR
GTTTGTAGATGCTGTGCGAC+AGG 0.534296 tig0036981:-23181 Msa1456180:CDS
CTTGGACTTTGCGGTGAAAG+TGG 0.534968 tig0036981:+22372 Msa1456170:CDS
AGTTGGAATATTATCAAGAA+AGG 0.536592 tig0036981:+22337 Msa1456170:CDS
ATCGCAAATGTAGCCTTCTA+CGG 0.536666 tig0036981:+22510 Msa1456170:three_prime_UTR
AGAATTGGAACTAGACCAGT+TGG 0.537321 tig0036981:+22320 Msa1456170:CDS
GTCAAATCAGTAGCTTCACT+TGG 0.539419 tig0036981:+19838 Msa1456170:CDS
TCCTCATTATCACGGCTCAT+GGG 0.543503 tig0036981:-21875 Msa1456180:three_prime_UTR
AACTATACTGAATTTGGTGG+GGG 0.544382 tig0036981:+22786 Msa1456170:three_prime_UTR
TATGAAGTCAAAGGACCAGC+TGG 0.544591 tig0036981:+21139 Msa1456170:CDS
TTCTTGTAGCCACTTCCAGA+AGG 0.547912 tig0036981:-19893 None:intergenic
CTACAAACTCATTCCATGGA+AGG 0.551044 tig0036981:+23196 Msa1456170:three_prime_UTR
GCAGGATCGCAAGCTGAAAG+AGG 0.551716 tig0036981:+22206 Msa1456170:intron
CACCTCAAGATGACCCCAGA+TGG 0.552036 tig0036981:-21852 Msa1456180:three_prime_UTR
TCCCAAGAGAAAAGACCAGC+TGG 0.553440 tig0036981:-21154 Msa1456180:three_prime_UTR
GGTACCAGAAGGTTTAGGAT+TGG 0.557599 tig0036981:+19957 Msa1456170:CDS
ACTGTTCAGAGACTCCATCT+GGG 0.560536 tig0036981:+21838 Msa1456170:CDS
CAGGTTCACGAAAAGAGAAT+GGG 0.560835 tig0036981:-23162 Msa1456180:CDS
ATCAAAATGGAACCCTTCCA+TGG 0.561331 tig0036981:-23209 Msa1456180:CDS
TTGCTGCTTCAGAGATAGGG+AGG 0.563350 tig0036981:+20055 Msa1456170:CDS
TGGAAGTGGCTACAAGAAGA+AGG 0.567416 tig0036981:+19898 Msa1456170:CDS
TATTAGAGAAAGGTCAAGAG+AGG 0.570783 tig0036981:+20122 Msa1456170:CDS
CCCTCATGAGTGCCTTTGTG+AGG 0.571802 tig0036981:-23076 Msa1456180:CDS
CAACTATACTGAATTTGGTG+GGG 0.573463 tig0036981:+22785 Msa1456170:three_prime_UTR
ACAATGATTCGACGATAAGT+CGG 0.577569 tig0036981:+23135 Msa1456170:three_prime_UTR
TATAACCGCCCTCTTCCAGA+AGG 0.578293 tig0036981:+21755 Msa1456170:CDS
CTCTAAGAACTTATGCCCGA+GGG 0.578429 tig0036981:+22921 Msa1456170:three_prime_UTR
ATGATCATCTGTAGTCACTC+TGG 0.581191 tig0036981:-21113 Msa1456180:three_prime_UTR
GATCATGCTTATGAAGTCAA+AGG 0.581508 tig0036981:+21130 Msa1456170:CDS
AGATCTCATCAATTTGCCGC+AGG 0.582417 tig0036981:-22287 Msa1456180:three_prime_UTR
ATTTGGAATTCTCAGATCAA+GGG 0.583610 tig0036981:+20608 Msa1456170:CDS
TATCTGAGATTAGTAGCACT+AGG 0.584493 tig0036981:+21788 Msa1456170:CDS
GTTCATTCTCTATGTAATCA+CGG 0.584697 tig0036981:-22712 Msa1456180:three_prime_UTR
ATATGCATACACCTTGACAC+TGG 0.586569 tig0036981:+21643 Msa1456170:CDS
TGTAGACAAACCAAAGGAGG+AGG 0.587728 tig0036981:-23115 Msa1456180:CDS
CTCGGATATCCCCAGTGTCA+AGG 0.587901 tig0036981:-21654 Msa1456180:three_prime_UTR
TATCTTATTAGCGCTCATGC+AGG 0.590245 tig0036981:-23296 Msa1456180:intron
TACAAACTCATTCCATGGAA+GGG 0.592326 tig0036981:+23197 Msa1456170:three_prime_UTR
GTTATTCCAGTGCAGGTCAG+AGG 0.594794 tig0036981:+20296 Msa1456170:intron
ACAAAGGCACTCATGAGGGT+TGG 0.596296 tig0036981:+23080 Msa1456170:three_prime_UTR
CCCTCACAAAGGCACTCATG+AGG 0.597403 tig0036981:+23075 Msa1456170:three_prime_UTR
TAGCAGTCGGAATAAGAGAA+GGG 0.598131 tig0036981:+22253 Msa1456170:CDS
AAGAACTTATGCCCGAGGGA+AGG 0.599553 tig0036981:+22925 Msa1456170:three_prime_UTR
GTAGACGTTGCTGAGACCAA+TGG 0.600772 tig0036981:+21701 Msa1456170:CDS
TCAAGGCTTGCAATAGCAGT+CGG 0.600784 tig0036981:+22240 Msa1456170:CDS
CACACTTTGTTCCCTCACAA+AGG 0.600880 tig0036981:+23064 Msa1456170:three_prime_UTR
CCTCACAAAGGCACTCATGA+GGG 0.602588 tig0036981:+23076 Msa1456170:three_prime_UTR
TGGAATATTATCAAGAAAGG+AGG 0.602703 tig0036981:+22340 Msa1456170:CDS
CTCCTGCCTTGACAGAAAGG+GGG 0.606795 tig0036981:-21198 Msa1456180:three_prime_UTR
GTTCTTACCAAGTCTGCAAG+TGG 0.608009 tig0036981:-20669 None:intergenic
ATAGCAGTCGGAATAAGAGA+AGG 0.608578 tig0036981:+22252 Msa1456170:CDS
CCTCATGAGTGCCTTTGTGA+GGG 0.609759 tig0036981:-23075 Msa1456180:CDS
TTATCAAGAAAGGAGGCTCA+AGG 0.609776 tig0036981:+22347 Msa1456170:CDS
AAAGCTAGTGTGGTACCAGA+AGG 0.610016 tig0036981:+19946 Msa1456170:CDS
TCTCTAAGAACTTATGCCCG+AGG 0.611187 tig0036981:+22920 Msa1456170:three_prime_UTR
TGCTGCTTCAGAGATAGGGA+GGG 0.612119 tig0036981:+20056 Msa1456170:CDS
GGGTTGTAATAATTGTGGCC+GGG 0.612240 tig0036981:-22590 Msa1456180:three_prime_UTR
ACAAAGTGTGATGATTTGCT+AGG 0.614058 tig0036981:-23051 Msa1456180:CDS
CATTGTAGACAAACCAAAGG+AGG 0.615228 tig0036981:-23118 Msa1456180:CDS
ACTGTTGTTTGTATCTCTTG+AGG 0.620279 tig0036981:+22463 Msa1456170:three_prime_UTR
GGTGAAAGTGGTGATGTCCT+TGG 0.620946 tig0036981:+22384 Msa1456170:CDS
CATTCAATCAACCTTTAAAG+GGG 0.622188 tig0036981:+22548 Msa1456170:three_prime_UTR
GGTTGTGTGATAACCAGCAA+GGG 0.628035 tig0036981:-21936 Msa1456180:three_prime_UTR
TGGTTGTGTGATAACCAGCA+AGG 0.629031 tig0036981:-21937 Msa1456180:three_prime_UTR
AGCAGTCGGAATAAGAGAAG+GGG 0.636940 tig0036981:+22254 Msa1456170:CDS
AATCATTGTAGACAAACCAA+AGG 0.637419 tig0036981:-23121 Msa1456180:CDS
GAAGCATCCCTTCTGGAAGA+GGG 0.639736 tig0036981:-21763 Msa1456180:three_prime_UTR
ATACTAGCTCCTCATTATCA+CGG 0.640006 tig0036981:-21883 Msa1456180:three_prime_UTR
CTGTAGTCACTCTGGCACTG+TGG 0.648083 tig0036981:-21105 Msa1456180:three_prime_UTR
ATTGTAGAATCAGTTTCCTG+TGG 0.648786 tig0036981:-20177 None:intergenic
GTAATGGGTTGTAATAATTG+TGG 0.651529 tig0036981:-22595 Msa1456180:three_prime_UTR
ATAACCGCCCTCTTCCAGAA+GGG 0.651691 tig0036981:+21756 Msa1456170:CDS
TGATTCCAATAAGAAAGCAT+CGG 0.654051 tig0036981:-21816 Msa1456180:three_prime_UTR
GACACCAGTGAAAGCTAGTG+TGG 0.671601 tig0036981:+19936 Msa1456170:CDS
TCTGAGATTAGTAGCACTAG+GGG 0.673869 tig0036981:+21790 Msa1456170:CDS
CTGTTCAGAGACTCCATCTG+GGG 0.675062 tig0036981:+21839 Msa1456170:CDS
TGTGTGATAACCAGCAAGGG+CGG 0.678647 tig0036981:-21933 Msa1456180:three_prime_UTR
ATGCATACACCTTGACACTG+GGG 0.698561 tig0036981:+21645 Msa1456170:CDS
GCATCCCTTCTGGAAGAGGG+CGG 0.703925 tig0036981:-21760 Msa1456180:three_prime_UTR
AACAACATAACAGACAACCA+TGG 0.720499 tig0036981:-20096 None:intergenic
CTGAGATTAGTAGCACTAGG+GGG 0.740933 tig0036981:+21791 Msa1456170:CDS
TGTGTAGTAAGTTGACACCA+TGG 0.752669 tig0036981:+20079 Msa1456170:CDS
TGAGGAGCTAGTATGCAAAG+CGG 0.776917 tig0036981:+21892 Msa1456170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATCAATATTTTAAAACAT+GGG - tig0036981:20374-20393 None:intergenic 10.0%
!!! ATAATCAATATTTTAAAACA+TGG - tig0036981:20375-20394 None:intergenic 10.0%
!!! TTTTGTATACATTATTTTGT+AGG - tig0036981:22899-22918 Msa1456180:three_prime_UTR 15.0%
!!! AAACTGATTCTACAATATAT+TGG + tig0036981:20184-20203 Msa1456170:CDS 20.0%
!!! TCATTTTCATTTTTTGTTGA+AGG - tig0036981:21053-21072 Msa1456180:three_prime_UTR 20.0%
!! ACATTTCCAAATTCAATTTA+TGG + tig0036981:21072-21091 Msa1456170:intron 20.0%
!!! TGCTTTTGTTTAAATCATAT+TGG - tig0036981:21574-21593 Msa1456180:three_prime_UTR 20.0%
!! TGTAATGAAATATATAGACA+CGG - tig0036981:22052-22071 Msa1456180:intron 20.0%
!! TTATACAACTATACTGAATT+TGG + tig0036981:22780-22799 Msa1456170:three_prime_UTR 20.0%
!!! TTTTAAAAAGTCCATCTTAT+TGG - tig0036981:23268-23287 Msa1456180:CDS 20.0%
!!! AAAGATTGTAGCCATTTTTT+TGG - tig0036981:19719-19738 None:intergenic 25.0%
!!! TAGAAATGATGTTATTTTGC+AGG + tig0036981:19999-20018 Msa1456170:CDS 25.0%
!!! TGTTGTTTCTTATTAGAGAA+AGG + tig0036981:20112-20131 Msa1456170:CDS 25.0%
! TGATTCTACAATATATTGGT+GGG + tig0036981:20188-20207 Msa1456170:intron 25.0%
!! GAAATTGAGTTCTTTTCATA+TGG + tig0036981:20250-20269 Msa1456170:intron 25.0%
! AAGGAAAAAGCTTCTTATTA+GGG - tig0036981:20557-20576 None:intergenic 25.0%
!! TCAACATCTATTAGTTTACA+AGG + tig0036981:20906-20925 Msa1456170:intron 25.0%
! AAAACAAGTAAGACTCAATT+TGG - tig0036981:21000-21019 Msa1456180:three_prime_UTR 25.0%
!! TTTTGTTGAAGGATATTGAT+GGG - tig0036981:21042-21061 Msa1456180:three_prime_UTR 25.0%
!! TTTTTGTTGAAGGATATTGA+TGG - tig0036981:21043-21062 Msa1456180:three_prime_UTR 25.0%
! TCTGATCCATAAATTGAATT+TGG - tig0036981:21081-21100 Msa1456180:three_prime_UTR 25.0%
! ATGAAAAGAAACATATGAAG+AGG - tig0036981:21243-21262 Msa1456180:three_prime_UTR 25.0%
! ATAGTTTATTACCTGTTCAA+TGG - tig0036981:21960-21979 Msa1456180:intron 25.0%
! AGGTAATAAACTATACATTC+AGG + tig0036981:21966-21985 Msa1456170:intron 25.0%
! GGTAATAAACTATACATTCA+GGG + tig0036981:21967-21986 Msa1456170:intron 25.0%
!! TTTCTTGATAATATTCCAAC+TGG - tig0036981:22338-22357 Msa1456180:three_prime_UTR 25.0%
! AGTTGGAATATTATCAAGAA+AGG + tig0036981:22337-22356 Msa1456170:CDS 25.0%
!!! AAGATTAGAAGTATTTTGCA+AGG - tig0036981:22413-22432 Msa1456180:three_prime_UTR 25.0%
! GAAATATATGTTCCATATAG+AGG - tig0036981:22850-22869 Msa1456180:three_prime_UTR 25.0%
!!! ATTATTTTGTAGGAAACCAT+GGG - tig0036981:22889-22908 Msa1456180:three_prime_UTR 25.0%
!!! TAAGATGGACTTTTTAAAAC+CGG + tig0036981:23269-23288 Msa1456170:three_prime_UTR 25.0%
CAAAACCAGAACCAAAAAAA+TGG + tig0036981:19705-19724 Msa1456170:exon 30.0%
! AAAATGGCTACAATCTTTTC+TGG + tig0036981:19721-19740 Msa1456170:exon 30.0%
! TTCTCTTTTCACACAAACAA+GGG + tig0036981:19760-19779 Msa1456170:CDS 30.0%
CTGATTCTACAATATATTGG+TGG + tig0036981:20187-20206 Msa1456170:intron 30.0%
! TTGAGTTCTTTTCATATGGT+TGG + tig0036981:20254-20273 Msa1456170:intron 30.0%
ATTCAGTTCATTCAAAGTTC+AGG - tig0036981:20445-20464 None:intergenic 30.0%
TTGAATGAACTGAATTGAGT+AGG + tig0036981:20450-20469 Msa1456170:intron 30.0%
GAAGGAAAAAGCTTCTTATT+AGG - tig0036981:20558-20577 None:intergenic 30.0%
! ATTTGGAATTCTCAGATCAA+GGG + tig0036981:20608-20627 Msa1456170:CDS 30.0%
ACAGAAGAAGAGAAATGAAA+AGG - tig0036981:20694-20713 None:intergenic 30.0%
CTTAAGAACATTAACTGATC+TGG - tig0036981:20797-20816 Msa1456180:three_prime_UTR 30.0%
GAGAGTTTCTCAATTAAAAC+CGG - tig0036981:20960-20979 Msa1456180:three_prime_UTR 30.0%
TTAATTGAGAAACTCTCCAA+AGG + tig0036981:20963-20982 Msa1456170:intron 30.0%
!! TTTGGATTAGTTTCTACCTT+TGG - tig0036981:20982-21001 Msa1456180:three_prime_UTR 30.0%
! ATGCTTCTTTTTCCTTGATA+TGG - tig0036981:21383-21402 Msa1456180:three_prime_UTR 30.0%
! TTTTCATGCTTCTCAATTCT+TGG + tig0036981:21501-21520 Msa1456170:intron 30.0%
CTACTTTGTCGTCAAAAAAA+GGG - tig0036981:21685-21704 Msa1456180:three_prime_UTR 30.0%
TCTACTTTGTCGTCAAAAAA+AGG - tig0036981:21686-21705 Msa1456180:three_prime_UTR 30.0%
! TGATTCCAATAAGAAAGCAT+CGG - tig0036981:21819-21838 Msa1456180:three_prime_UTR 30.0%
TATTCTCATTACCATCATGT+TGG - tig0036981:21995-22014 Msa1456180:intron 30.0%
! ATTGCATTTTACGTAGTACA+TGG + tig0036981:22117-22136 Msa1456170:intron 30.0%
! TTGCATTTTACGTAGTACAT+GGG + tig0036981:22118-22137 Msa1456170:intron 30.0%
TGGAATATTATCAAGAAAGG+AGG + tig0036981:22340-22359 Msa1456170:CDS 30.0%
CAAAATACTTCTAATCTTGC+AGG + tig0036981:22415-22434 Msa1456170:exon 30.0%
AACAACAGTATGTCATTAAC+TGG - tig0036981:22452-22471 Msa1456180:three_prime_UTR 30.0%
TGCATTCAATCAACCTTTAA+AGG + tig0036981:22546-22565 Msa1456170:three_prime_UTR 30.0%
GCATTCAATCAACCTTTAAA+GGG + tig0036981:22547-22566 Msa1456170:three_prime_UTR 30.0%
! CATTCAATCAACCTTTAAAG+GGG + tig0036981:22548-22567 Msa1456170:three_prime_UTR 30.0%
!! GTAATGGGTTGTAATAATTG+TGG - tig0036981:22598-22617 Msa1456180:three_prime_UTR 30.0%
GTTCATTCTCTATGTAATCA+CGG - tig0036981:22715-22734 Msa1456180:three_prime_UTR 30.0%
TACAACTATACTGAATTTGG+TGG + tig0036981:22783-22802 Msa1456170:three_prime_UTR 30.0%
ACAACTATACTGAATTTGGT+GGG + tig0036981:22784-22803 Msa1456170:three_prime_UTR 30.0%
CATGGGGAAAAAAGAAAAAT+AGG - tig0036981:22872-22891 Msa1456180:three_prime_UTR 30.0%
!! CTATTTTTCTTTTTTCCCCA+TGG + tig0036981:22870-22889 Msa1456170:three_prime_UTR 30.0%
!! TTATTTTGTAGGAAACCATG+GGG - tig0036981:22888-22907 Msa1456180:three_prime_UTR 30.0%
!! CATTATTTTGTAGGAAACCA+TGG - tig0036981:22890-22909 Msa1456180:three_prime_UTR 30.0%
AATCATTGTAGACAAACCAA+AGG - tig0036981:23124-23143 Msa1456180:CDS 30.0%
TTGCTTGATATGCATCAAAA+TGG - tig0036981:23225-23244 Msa1456180:CDS 30.0%
!!! TGTAGCCATTTTTTTGGTTC+TGG - tig0036981:19713-19732 None:intergenic 35.0%
! CTTCTCTTTTCACACAAACA+AGG + tig0036981:19759-19778 Msa1456170:CDS 35.0%
AACAACATAACAGACAACCA+TGG - tig0036981:20099-20118 None:intergenic 35.0%
TATTAGAGAAAGGTCAAGAG+AGG + tig0036981:20122-20141 Msa1456170:CDS 35.0%
!! TCTGTTTGGAAGCATTACTT+TGG + tig0036981:20147-20166 Msa1456170:CDS 35.0%
ATTGTAGAATCAGTTTCCTG+TGG - tig0036981:20180-20199 None:intergenic 35.0%
!!! ATTGGTGGGTTTCTTTTGTT+TGG + tig0036981:20202-20221 Msa1456170:intron 35.0%
! ATATGGTTGGTTGATTCAGT+TGG + tig0036981:20267-20286 Msa1456170:intron 35.0%
!! TGGTTGATTCAGTTGGTAAT+TGG + tig0036981:20274-20293 Msa1456170:intron 35.0%
ACTACTAACCTTGAAGTTCT+TGG - tig0036981:20329-20348 None:intergenic 35.0%
TTCATTCAAAGTTCAGGATG+TGG - tig0036981:20439-20458 None:intergenic 35.0%
! GAAGAATGAATGTCTGAAAC+TGG + tig0036981:20515-20534 Msa1456170:CDS 35.0%
! CATTTGGAATTCTCAGATCA+AGG + tig0036981:20607-20626 Msa1456170:CDS 35.0%
! CAACTAGATTTTCATTGCGA+AGG - tig0036981:20644-20663 None:intergenic 35.0%
! TCTAAAATTATGTCCACGCT+AGG - tig0036981:20773-20792 None:intergenic 35.0%
! AGGACTTCTTTTGTATGTGA+AGG + tig0036981:20926-20945 Msa1456170:intron 35.0%
! GGACTTCTTTTGTATGTGAA+GGG + tig0036981:20927-20946 Msa1456170:intron 35.0%
GATCATGCTTATGAAGTCAA+AGG + tig0036981:21130-21149 Msa1456170:CDS 35.0%
!!! CAGTTGGTAACTTTTACTGT+AGG + tig0036981:21541-21560 Msa1456170:intron 35.0%
AAACAAAAGCAATGCAGAGT+TGG + tig0036981:21583-21602 Msa1456170:CDS 35.0%
TATGCATATCGATCTGCATT+TGG - tig0036981:21632-21651 Msa1456180:three_prime_UTR 35.0%
! AGTGCTACTAATCTCAGATA+TGG - tig0036981:21788-21807 Msa1456180:three_prime_UTR 35.0%
! TATCTGAGATTAGTAGCACT+AGG + tig0036981:21788-21807 Msa1456170:CDS 35.0%
! ATCTGAGATTAGTAGCACTA+GGG + tig0036981:21789-21808 Msa1456170:CDS 35.0%
ATACTAGCTCCTCATTATCA+CGG - tig0036981:21886-21905 Msa1456180:three_prime_UTR 35.0%
TTATCACACAACCATTGAAC+AGG + tig0036981:21946-21965 Msa1456170:CDS 35.0%
GTACTACGTAAAATGCAATG+AGG - tig0036981:22116-22135 Msa1456180:intron 35.0%
GAACAAAGCATACAAATTGC+AGG + tig0036981:22188-22207 Msa1456170:intron 35.0%
AAGAGGCAAATCTAGATTCA+AGG + tig0036981:22223-22242 Msa1456170:CDS 35.0%
! ACTGTTGTTTGTATCTCTTG+AGG + tig0036981:22463-22482 Msa1456170:three_prime_UTR 35.0%
GGATGAAAAAACTGAACACT+TGG + tig0036981:22484-22503 Msa1456170:three_prime_UTR 35.0%
! CAACTATACTGAATTTGGTG+GGG + tig0036981:22785-22804 Msa1456170:three_prime_UTR 35.0%
! AACTATACTGAATTTGGTGG+GGG + tig0036981:22786-22805 Msa1456170:three_prime_UTR 35.0%
! ATTTGGTGGGGGAAAAAATA+AGG + tig0036981:22797-22816 Msa1456170:three_prime_UTR 35.0%
TTTGGTGGGGGAAAAAATAA+GGG + tig0036981:22798-22817 Msa1456170:three_prime_UTR 35.0%
ATGCAAGAGCAATCTGAAAA+TGG - tig0036981:22953-22972 Msa1456180:three_prime_UTR 35.0%
AGATTGCTCTTGCATACTTA+TGG + tig0036981:22958-22977 Msa1456170:three_prime_UTR 35.0%
CTTACTTGAGTAGAGTTATG+AGG + tig0036981:23027-23046 Msa1456170:three_prime_UTR 35.0%
!! ACAAAGTGTGATGATTTGCT+AGG - tig0036981:23054-23073 Msa1456180:CDS 35.0%
TAGAAATAATCCTCCTCCTT+TGG + tig0036981:23105-23124 Msa1456170:three_prime_UTR 35.0%
ACAATGATTCGACGATAAGT+CGG + tig0036981:23135-23154 Msa1456170:three_prime_UTR 35.0%
TACAAACTCATTCCATGGAA+GGG + tig0036981:23197-23216 Msa1456170:three_prime_UTR 35.0%
AAAAGTCCATCTTATTGGAC+CGG - tig0036981:23263-23282 Msa1456180:CDS 35.0%
! ATGGCTACAATCTTTTCTGG+AGG + tig0036981:19724-19743 Msa1456170:CDS 40.0%
!! CAGATGAAGAGTTGGTACTT+TGG - tig0036981:19803-19822 None:intergenic 40.0%
GGTTTCTTCAGATGAAGAGT+TGG - tig0036981:19811-19830 None:intergenic 40.0%
!! GCTACTGATTTGACAGAGAA+AGG - tig0036981:19832-19851 None:intergenic 40.0%
GTCAAATCAGTAGCTTCACT+TGG + tig0036981:19838-19857 Msa1456170:CDS 40.0%
!! TTATTTTGCAGGTGCCTAAG+AGG + tig0036981:20010-20029 Msa1456170:CDS 40.0%
GGATTTATCCACAACCTCTT+AGG - tig0036981:20027-20046 None:intergenic 40.0%
! TGTGTAGTAAGTTGACACCA+TGG + tig0036981:20079-20098 Msa1456170:CDS 40.0%
TTACTTTGGTATTCTGCCAC+AGG + tig0036981:20161-20180 Msa1456170:CDS 40.0%
GTAATTGGTTATTCCAGTGC+AGG + tig0036981:20289-20308 Msa1456170:intron 40.0%
TGTCTATGATATTCCTAGCG+TGG + tig0036981:20757-20776 Msa1456170:intron 40.0%
ATGATCATCTGTAGTCACTC+TGG - tig0036981:21116-21135 Msa1456180:three_prime_UTR 40.0%
TTTCCTTGATATGGAAGAGC+TGG - tig0036981:21374-21393 Msa1456180:three_prime_UTR 40.0%
!! CTTTCTGGCTCTGATACATT+TGG - tig0036981:21417-21436 Msa1456180:three_prime_UTR 40.0%
AAAGTTCTGCTGCAACTTTC+TGG - tig0036981:21432-21451 Msa1456180:three_prime_UTR 40.0%
CACATTCATAACTGTGCAGT+TGG + tig0036981:21525-21544 Msa1456170:intron 40.0%
ATATGCATACACCTTGACAC+TGG + tig0036981:21643-21662 Msa1456170:CDS 40.0%
TATGCATACACCTTGACACT+GGG + tig0036981:21644-21663 Msa1456170:CDS 40.0%
GTCAAAAAAAGGGTCTGACT+CGG - tig0036981:21675-21694 Msa1456180:three_prime_UTR 40.0%
TGCTGTCTGAGAAAAACCAT+TGG - tig0036981:21720-21739 Msa1456180:three_prime_UTR 40.0%
! TCTGAGATTAGTAGCACTAG+GGG + tig0036981:21790-21809 Msa1456170:CDS 40.0%
ATAGCAGTCGGAATAAGAGA+AGG + tig0036981:22252-22271 Msa1456170:CDS 40.0%
TAGCAGTCGGAATAAGAGAA+GGG + tig0036981:22253-22272 Msa1456170:CDS 40.0%
AAGGGGAAAAAATGATCCTG+CGG + tig0036981:22271-22290 Msa1456170:CDS 40.0%
GATCTTCGAGCAGAAAGAAT+TGG + tig0036981:22305-22324 Msa1456170:CDS 40.0%
AGAATTGGAACTAGACCAGT+TGG + tig0036981:22320-22339 Msa1456170:CDS 40.0%
TTATCAAGAAAGGAGGCTCA+AGG + tig0036981:22347-22366 Msa1456170:CDS 40.0%
! AGTATTTTGCAAGGTCTCCA+AGG - tig0036981:22404-22423 Msa1456180:three_prime_UTR 40.0%
ATCGCAAATGTAGCCTTCTA+CGG + tig0036981:22510-22529 Msa1456170:three_prime_UTR 40.0%
TTGATCATCGTCCCCTTTAA+AGG - tig0036981:22562-22581 Msa1456180:three_prime_UTR 40.0%
! CGATGATCAAGTTTTTGACC+CGG + tig0036981:22572-22591 Msa1456170:three_prime_UTR 40.0%
TGGGTTGTAATAATTGTGGC+CGG - tig0036981:22594-22613 Msa1456180:three_prime_UTR 40.0%
! TTTTCCACTTTACAAGCTGC+AGG - tig0036981:22624-22643 Msa1456180:three_prime_UTR 40.0%
CATCTTTGCAAGCCTCTATA+TGG + tig0036981:22835-22854 Msa1456170:three_prime_UTR 40.0%
TGCTCTTGCATACTTATGGT+TGG + tig0036981:22962-22981 Msa1456170:three_prime_UTR 40.0%
GCTCTTGCATACTTATGGTT+GGG + tig0036981:22963-22982 Msa1456170:three_prime_UTR 40.0%
CATTGTAGACAAACCAAAGG+AGG - tig0036981:23121-23140 Msa1456180:CDS 40.0%
CAGGTTCACGAAAAGAGAAT+GGG - tig0036981:23165-23184 Msa1456180:CDS 40.0%
ACAGGTTCACGAAAAGAGAA+TGG - tig0036981:23166-23185 Msa1456180:CDS 40.0%
GCATCTACAAACTCATTCCA+TGG + tig0036981:23192-23211 Msa1456170:three_prime_UTR 40.0%
CTACAAACTCATTCCATGGA+AGG + tig0036981:23196-23215 Msa1456170:three_prime_UTR 40.0%
ATCAAAATGGAACCCTTCCA+TGG - tig0036981:23212-23231 Msa1456180:CDS 40.0%
! GCAATTGTACAAGCCTTTTC+CGG + tig0036981:23241-23260 Msa1456170:three_prime_UTR 40.0%
TTCCAGAAGGTTTGAACTGC+TGG - tig0036981:19883-19902 None:intergenic 45.0%
! CAGTTCAAACCTTCTGGAAG+TGG + tig0036981:19884-19903 Msa1456170:CDS 45.0%
TTCTTGTAGCCACTTCCAGA+AGG - tig0036981:19896-19915 None:intergenic 45.0%
TGGAAGTGGCTACAAGAAGA+AGG + tig0036981:19898-19917 Msa1456170:CDS 45.0%
!! ACTAGCTTTCACTGGTGTCT+TGG - tig0036981:19935-19954 None:intergenic 45.0%
AAAGCTAGTGTGGTACCAGA+AGG + tig0036981:19946-19965 Msa1456170:CDS 45.0%
AGTGTGGTACCAGAAGGTTT+AGG + tig0036981:19952-19971 Msa1456170:CDS 45.0%
! GGTACCAGAAGGTTTAGGAT+TGG + tig0036981:19957-19976 Msa1456170:CDS 45.0%
GCAACCAATCCTAAACCTTC+TGG - tig0036981:19964-19983 None:intergenic 45.0%
! CTGTTGCTGCTTCAGAGATA+GGG + tig0036981:20052-20071 Msa1456170:CDS 45.0%
GGTCAAGAGAGGATTCTGTT+TGG + tig0036981:20133-20152 Msa1456170:CDS 45.0%
GAAGAGCTCCAAGAACTTCA+AGG + tig0036981:20318-20337 Msa1456170:CDS 45.0%
! TTTTCCTTCTCCTGTGACAC+TGG + tig0036981:20569-20588 Msa1456170:CDS 45.0%
AAGAAGTCATCCAGTGTCAC+AGG - tig0036981:20582-20601 None:intergenic 45.0%
TGACACTGGATGACTTCTTC+TGG + tig0036981:20583-20602 Msa1456170:CDS 45.0%
GACACTGGATGACTTCTTCT+GGG + tig0036981:20584-20603 Msa1456170:CDS 45.0%
GATGACTTCTTCTGGGCATT+TGG + tig0036981:20591-20610 Msa1456170:CDS 45.0%
TGTGATTCCACTTGCAGACT+TGG + tig0036981:20662-20681 Msa1456170:CDS 45.0%
GTTCTTACCAAGTCTGCAAG+TGG - tig0036981:20672-20691 None:intergenic 45.0%
TCTGTATCATGCAGCTGTAG+AGG + tig0036981:20709-20728 Msa1456170:intron 45.0%
GTATGTGAAGGGTCGTAAAC+CGG + tig0036981:20938-20957 Msa1456170:intron 45.0%
TATGAAGTCAAAGGACCAGC+TGG + tig0036981:21139-21158 Msa1456170:CDS 45.0%
!!! ACCAGCTGGTCTTTTCTCTT+GGG + tig0036981:21153-21172 Msa1456170:CDS 45.0%
GGGATTACCTATTTGCCCTA+AGG + tig0036981:21173-21192 Msa1456170:CDS 45.0%
TTCTCCTGCCTTGACAGAAA+GGG - tig0036981:21203-21222 Msa1456180:three_prime_UTR 45.0%
AATACATCCATGTCCATCCG+AGG + tig0036981:21295-21314 Msa1456170:intron 45.0%
ATACATCCATGTCCATCCGA+GGG + tig0036981:21296-21315 Msa1456170:intron 45.0%
TAGCCAGCTCTTCCATATCA+AGG + tig0036981:21368-21387 Msa1456170:intron 45.0%
GCAATCCAAGCTGTATTCTG+AGG + tig0036981:21452-21471 Msa1456170:intron 45.0%
ATGCATACACCTTGACACTG+GGG + tig0036981:21645-21664 Msa1456170:CDS 45.0%
!! AGATATGGAAGCATCCCTTC+TGG - tig0036981:21773-21792 Msa1456180:three_prime_UTR 45.0%
CTGAGATTAGTAGCACTAGG+GGG + tig0036981:21791-21810 Msa1456170:CDS 45.0%
!! GGGTACCGATGCTTTCTTAT+TGG + tig0036981:21811-21830 Msa1456170:CDS 45.0%
ACTGTTCAGAGACTCCATCT+GGG + tig0036981:21838-21857 Msa1456170:CDS 45.0%
TCCTCATTATCACGGCTCAT+GGG - tig0036981:21878-21897 Msa1456180:three_prime_UTR 45.0%
TGAGGAGCTAGTATGCAAAG+CGG + tig0036981:21892-21911 Msa1456170:CDS 45.0%
GGTTGTGTGATAACCAGCAA+GGG - tig0036981:21939-21958 Msa1456180:three_prime_UTR 45.0%
TGGTTGTGTGATAACCAGCA+AGG - tig0036981:21940-21959 Msa1456180:three_prime_UTR 45.0%
CATTCAGGGTTCCAACATGA+TGG + tig0036981:21981-22000 Msa1456170:intron 45.0%
TCAAGGCTTGCAATAGCAGT+CGG + tig0036981:22240-22259 Msa1456170:CDS 45.0%
AGCAGTCGGAATAAGAGAAG+GGG + tig0036981:22254-22273 Msa1456170:CDS 45.0%
AGATCTCATCAATTTGCCGC+AGG - tig0036981:22290-22309 Msa1456180:three_prime_UTR 45.0%
CTCAAGGATCTTGGACTTTG+CGG + tig0036981:22363-22382 Msa1456170:CDS 45.0%
GGGTTGTAATAATTGTGGCC+GGG - tig0036981:22593-22612 Msa1456180:three_prime_UTR 45.0%
ACAAGCTGCAGGCATGTAAT+GGG - tig0036981:22613-22632 Msa1456180:three_prime_UTR 45.0%
TACAAGCTGCAGGCATGTAA+TGG - tig0036981:22614-22633 Msa1456180:three_prime_UTR 45.0%
! TCTCTAAGAACTTATGCCCG+AGG + tig0036981:22920-22939 Msa1456170:three_prime_UTR 45.0%
! CTCTAAGAACTTATGCCCGA+GGG + tig0036981:22921-22940 Msa1456170:three_prime_UTR 45.0%
CACACTTTGTTCCCTCACAA+AGG + tig0036981:23064-23083 Msa1456170:three_prime_UTR 45.0%
TGTAGACAAACCAAAGGAGG+AGG - tig0036981:23118-23137 Msa1456180:CDS 45.0%
CCATCTTATTGGACCGGAAA+AGG - tig0036981:23257-23276 Msa1456180:CDS 45.0%
! CCTTTTCCGGTCCAATAAGA+TGG + tig0036981:23254-23273 Msa1456170:three_prime_UTR 45.0%
CTCCAGCAGTTCAAACCTTC+TGG + tig0036981:19878-19897 Msa1456170:CDS 50.0%
GACACCAGTGAAAGCTAGTG+TGG + tig0036981:19936-19955 Msa1456170:CDS 50.0%
!! GGTACCACACTAGCTTTCAC+TGG - tig0036981:19943-19962 None:intergenic 50.0%
! TCTGAAGCAGCAACAGCATC+AGG - tig0036981:20048-20067 None:intergenic 50.0%
! GCTGTTGCTGCTTCAGAGAT+AGG + tig0036981:20051-20070 Msa1456170:CDS 50.0%
! TTGCTGCTTCAGAGATAGGG+AGG + tig0036981:20055-20074 Msa1456170:CDS 50.0%
! TGCTGCTTCAGAGATAGGGA+GGG + tig0036981:20056-20075 Msa1456170:CDS 50.0%
GTTATTCCAGTGCAGGTCAG+AGG + tig0036981:20296-20315 Msa1456170:intron 50.0%
TCATCCAGTGTCACAGGAGA+AGG - tig0036981:20576-20595 None:intergenic 50.0%
!!! GACCAGCTGGTCTTTTCTCT+TGG + tig0036981:21152-21171 Msa1456170:CDS 50.0%
TCCCAAGAGAAAAGACCAGC+TGG - tig0036981:21157-21176 Msa1456180:three_prime_UTR 50.0%
TCTCCTGCCTTGACAGAAAG+GGG - tig0036981:21202-21221 Msa1456180:three_prime_UTR 50.0%
GTTCTCCTGCCTTGACAGAA+AGG - tig0036981:21204-21223 Msa1456180:three_prime_UTR 50.0%
TTCTGTCAAGGCAGGAGAAC+AGG + tig0036981:21204-21223 Msa1456170:CDS 50.0%
TACATCCATGTCCATCCGAG+GGG + tig0036981:21297-21316 Msa1456170:intron 50.0%
TTGCGCCTCAGAATACAGCT+TGG - tig0036981:21460-21479 Msa1456180:three_prime_UTR 50.0%
! AAGCAATGCAGAGTTGGCTC+TGG + tig0036981:21589-21608 Msa1456170:CDS 50.0%
GTAGACGTTGCTGAGACCAA+TGG + tig0036981:21701-21720 Msa1456170:CDS 50.0%
TATAACCGCCCTCTTCCAGA+AGG + tig0036981:21755-21774 Msa1456170:CDS 50.0%
ATAACCGCCCTCTTCCAGAA+GGG + tig0036981:21756-21775 Msa1456170:CDS 50.0%
! GAAGCATCCCTTCTGGAAGA+GGG - tig0036981:21766-21785 Msa1456180:three_prime_UTR 50.0%
CACTGTTCAGAGACTCCATC+TGG + tig0036981:21837-21856 Msa1456170:CDS 50.0%
CTGTTCAGAGACTCCATCTG+GGG + tig0036981:21839-21858 Msa1456170:CDS 50.0%
CTCCTCATTATCACGGCTCA+TGG - tig0036981:21879-21898 Msa1456180:three_prime_UTR 50.0%
TGTGTGATAACCAGCAAGGG+CGG - tig0036981:21936-21955 Msa1456180:three_prime_UTR 50.0%
GAAAGGAGGCTCAAGGATCT+TGG + tig0036981:22354-22373 Msa1456170:CDS 50.0%
CTTGGACTTTGCGGTGAAAG+TGG + tig0036981:22372-22391 Msa1456170:CDS 50.0%
! GGTGAAAGTGGTGATGTCCT+TGG + tig0036981:22384-22403 Msa1456170:CDS 50.0%
TCACATGCGTTCACCGTAGA+AGG - tig0036981:22526-22545 Msa1456180:three_prime_UTR 50.0%
CATGCCTGCAGCTTGTAAAG+TGG + tig0036981:22617-22636 Msa1456170:three_prime_UTR 50.0%
AAGAACTTATGCCCGAGGGA+AGG + tig0036981:22925-22944 Msa1456170:three_prime_UTR 50.0%
TGAAAATGGCTCCTTCCCTC+GGG - tig0036981:22939-22958 Msa1456180:three_prime_UTR 50.0%
CTGAAAATGGCTCCTTCCCT+CGG - tig0036981:22940-22959 Msa1456180:three_prime_UTR 50.0%
CCTCATGAGTGCCTTTGTGA+GGG - tig0036981:23078-23097 Msa1456180:CDS 50.0%
!! CCTCACAAAGGCACTCATGA+GGG + tig0036981:23076-23095 Msa1456170:three_prime_UTR 50.0%
!! ACAAAGGCACTCATGAGGGT+TGG + tig0036981:23080-23099 Msa1456170:three_prime_UTR 50.0%
GTTTGTAGATGCTGTGCGAC+AGG - tig0036981:23184-23203 Msa1456180:CDS 50.0%
TAGCGCTCATGCAGGTATTC+CGG - tig0036981:23291-23310 Msa1456180:intron 50.0%
TGCAGGTGCCTAAGAGGTTG+TGG + tig0036981:20016-20035 Msa1456170:CDS 55.0%
CTGTAGTCACTCTGGCACTG+TGG - tig0036981:21108-21127 Msa1456180:three_prime_UTR 55.0%
GACAGAAAGGGGGCTCCTTA+GGG - tig0036981:21191-21210 Msa1456180:three_prime_UTR 55.0%
TGACAGAAAGGGGGCTCCTT+AGG - tig0036981:21192-21211 Msa1456180:three_prime_UTR 55.0%
AAGGAGCCCCCTTTCTGTCA+AGG + tig0036981:21192-21211 Msa1456170:CDS 55.0%
CTCCTGCCTTGACAGAAAGG+GGG - tig0036981:21201-21220 Msa1456180:three_prime_UTR 55.0%
GAAAACCCCTCGGATGGACA+TGG - tig0036981:21305-21324 Msa1456180:three_prime_UTR 55.0%
! TCCATCCGAGGGGTTTTCGA+CGG + tig0036981:21307-21326 Msa1456170:intron 55.0%
TCCTACCGTCGAAAACCCCT+CGG - tig0036981:21315-21334 Msa1456180:three_prime_UTR 55.0%
!! GCAGAGTTGGCTCTGGACTA+TGG + tig0036981:21596-21615 Msa1456170:CDS 55.0%
CTCGGATATCCCCAGTGTCA+AGG - tig0036981:21657-21676 Msa1456180:three_prime_UTR 55.0%
!! GGAAGCATCCCTTCTGGAAG+AGG - tig0036981:21767-21786 Msa1456180:three_prime_UTR 55.0%
! CTCCATCTGGGGTCATCTTG+AGG + tig0036981:21850-21869 Msa1456170:CDS 55.0%
CACCTCAAGATGACCCCAGA+TGG - tig0036981:21855-21874 Msa1456180:three_prime_UTR 55.0%
! GCCCATGAGCCGTGATAATG+AGG + tig0036981:21874-21893 Msa1456170:CDS 55.0%
GCAGGATCGCAAGCTGAAAG+AGG + tig0036981:22206-22225 Msa1456170:intron 55.0%
!! CCCTCACAAAGGCACTCATG+AGG + tig0036981:23075-23094 Msa1456170:three_prime_UTR 55.0%
CCCTCATGAGTGCCTTTGTG+AGG - tig0036981:23079-23098 Msa1456180:CDS 55.0%
GCTCTTCCTCTGACCTGCAC+TGG - tig0036981:20305-20324 None:intergenic 60.0%
GGGGGCTCCTTAGGGCAAAT+AGG - tig0036981:21183-21202 Msa1456180:three_prime_UTR 60.0%
AGCCCCCTTTCTGTCAAGGC+AGG + tig0036981:21196-21215 Msa1456170:CDS 60.0%
ACCGTCGAAAACCCCTCGGA+TGG - tig0036981:21311-21330 Msa1456180:three_prime_UTR 60.0%
! TCCGAGGGGTTTTCGACGGT+AGG + tig0036981:21311-21330 Msa1456170:intron 60.0%
! GCATCCCTTCTGGAAGAGGG+CGG - tig0036981:21763-21782 Msa1456180:three_prime_UTR 60.0%
! ACCAGCAAGGGCGGATTTGC+AGG - tig0036981:21927-21946 Msa1456180:three_prime_UTR 60.0%
GCCTGCAAATCCGCCCTTGC+TGG + tig0036981:21923-21942 Msa1456170:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0036981 gene 19646 23314 19646 ID=Msa1456170;Name=Msa1456170
tig0036981 mRNA 19646 23314 19646 ID=Msa1456170-mRNA-1;Parent=Msa1456170;Name=Msa1456170-mRNA-1;_AED=0.14;_eAED=0.14;_QI=78|1|1|1|1|1|6|886|490
tig0036981 exon 19646 20205 19646 ID=Msa1456170-mRNA-1:exon:20610;Parent=Msa1456170-mRNA-1
tig0036981 exon 20311 20339 20311 ID=Msa1456170-mRNA-1:exon:20611;Parent=Msa1456170-mRNA-1
tig0036981 exon 20472 20683 20472 ID=Msa1456170-mRNA-1:exon:20612;Parent=Msa1456170-mRNA-1
tig0036981 exon 21100 21225 21100 ID=Msa1456170-mRNA-1:exon:20613;Parent=Msa1456170-mRNA-1
tig0036981 exon 21563 21967 21563 ID=Msa1456170-mRNA-1:exon:20614;Parent=Msa1456170-mRNA-1
tig0036981 exon 22210 23314 22210 ID=Msa1456170-mRNA-1:exon:20615;Parent=Msa1456170-mRNA-1
tig0036981 five_prime_UTR 19646 19723 19646 ID=Msa1456170-mRNA-1:five_prime_utr;Parent=Msa1456170-mRNA-1
tig0036981 CDS 19724 20205 19724 ID=Msa1456170-mRNA-1:cds;Parent=Msa1456170-mRNA-1
tig0036981 CDS 20311 20339 20311 ID=Msa1456170-mRNA-1:cds;Parent=Msa1456170-mRNA-1
tig0036981 CDS 20472 20683 20472 ID=Msa1456170-mRNA-1:cds;Parent=Msa1456170-mRNA-1
tig0036981 CDS 21100 21225 21100 ID=Msa1456170-mRNA-1:cds;Parent=Msa1456170-mRNA-1
tig0036981 CDS 21563 21967 21563 ID=Msa1456170-mRNA-1:cds;Parent=Msa1456170-mRNA-1
tig0036981 CDS 22210 22428 22210 ID=Msa1456170-mRNA-1:cds;Parent=Msa1456170-mRNA-1
tig0036981 three_prime_UTR 22429 23314 22429 ID=Msa1456170-mRNA-1:three_prime_utr;Parent=Msa1456170-mRNA-1
Gene Sequence

>Msa1456170

ATGGCTACAATCTTTTCTGGAGGTTCAGTTTCACTCTTCTCTTTTCACACAAACAAGGGTAAATCATCTTTTGCAACCAAAGTACCAACTCTTCATCTGAAGAAACCTTTCTCTGTCAAATCAGTAGCTTCACTTGGAACTGAAACATCACTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGCTACAAGAAGAAGGTGTTATCACTGCCAAGACACCAGTGAAAGCTAGTGTGGTACCAGAAGGTTTAGGATTGGTTGCACTCAAAGATATTTCTAGAAATGATGTTATTTTGCAGGTGCCTAAGAGGTTGTGGATAAATCCTGATGCTGTTGCTGCTTCAGAGATAGGGAGGGTGTGTAGTAAGTTGACACCATGGTTGTCTGTTATGTTGTTTCTTATTAGAGAAAGGTCAAGAGAGGATTCTGTTTGGAAGCATTACTTTGGTATTCTGCCACAGGAAACTGATTCTACAATATATTGGTCAGAGGAAGAGCTCCAAGAACTTCAAGGTACTCAACTTCTGAACACAACACTGTCTGTGAAAGAATATGTGAAGAATGAATGTCTGAAACTGGAAAAAGAAATCATTCTCCCTAATAAGAAGCTTTTTCCTTCTCCTGTGACACTGGATGACTTCTTCTGGGCATTTGGAATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTGATTCCACTTGCAGACTTGATTAACCACAGTGCCAGAGTGACTACAGATGATCATGCTTATGAAGTCAAAGGACCAGCTGGTCTTTTCTCTTGGGATTACCTATTTGCCCTAAGGAGCCCCCTTTCTGTCAAGGCAGGAGAACAGGTGTATATCCAATATGATTTAAACAAAAGCAATGCAGAGTTGGCTCTGGACTATGGTTTCATTGAACCAAATGCAGATCGATATGCATACACCTTGACACTGGGGATATCCGAGTCAGACCCTTTTTTTGACGACAAAGTAGACGTTGCTGAGACCAATGGTTTTTCTCAGACAGCATACTTTGACATCTTCTATAACCGCCCTCTTCCAGAAGGGATGCTTCCATATCTGAGATTAGTAGCACTAGGGGGTACCGATGCTTTCTTATTGGAATCACTGTTCAGAGACTCCATCTGGGGTCATCTTGAGGTGCCCATGAGCCGTGATAATGAGGAGCTAGTATGCAAAGCGGTTCGAGATGCCTGCAAATCCGCCCTTGCTGGTTATCACACAACCATTGAACAGGATCGCAAGCTGAAAGAGGCAAATCTAGATTCAAGGCTTGCAATAGCAGTCGGAATAAGAGAAGGGGAAAAAATGATCCTGCGGCAAATTGATGAGATCTTCGAGCAGAAAGAATTGGAACTAGACCAGTTGGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGACTTTGCGGTGAAAGTGGTGATGTCCTTGGAGACCTTGCAAAATACTTCTAA

Protein sequence

>Msa1456170

MATIFSGGSVSLFSFHTNKGKSSFATKVPTLHLKKPFSVKSVASLGTETSLSPAVQTFWKWLQEEGVITAKTPVKASVVPEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSKLTPWLSVMLFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGTQLLNTTLSVKEYVKNECLKLEKEIILPNKKLFPSPVTLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTDDHAYEVKGPAGLFSWDYLFALRSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNADRYAYTLTLGISESDPFFDDKVDVAETNGFSQTAYFDIFYNRPLPEGMLPYLRLVALGGTDAFLLESLFRDSIWGHLEVPMSRDNEELVCKAVRDACKSALAGYHTTIEQDRKLKEANLDSRLAIAVGIREGEKMILRQIDEIFEQKELELDQLEYYQERRLKDLGLCGESGDVLGDLAKYF*