AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0415860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415860 MtrunA17_Chr3g0138501 87.541 305 25 4 1 304 1 293 1.23e-177 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415860 AT5G11450.2 57.475 301 117 4 8 304 22 315 1.51e-114 333
Msa0415860 AT5G11450.1 57.475 301 117 4 8 304 4 297 2.18e-114 332

Find 74 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGATAAGGTTGTTAT+TGG 0.169527 3_2:-62383476 None:intergenic
ACAAAGATCCCTGGAGATTT+TGG 0.175536 3_2:+62387351 Msa0415860:CDS
ACTGAAACGGTTGTCTCTTT+AGG 0.194094 3_2:+62387519 Msa0415860:three_prime_UTR
CTGAAACGGTTGTCTCTTTA+GGG 0.239298 3_2:+62387520 Msa0415860:three_prime_UTR
GAAATACTTACCATTGAATT+AGG 0.251354 3_2:-62386295 None:intergenic
ACTCTTCAAAGAACATAATA+TGG 0.255715 3_2:-62387439 None:intergenic
TGTCTTGCAGTGGCTCTTGC+TGG 0.263989 3_2:+62383756 Msa0415860:intron
AGGAGCATTTGGTTTGGTTT+TGG 0.268058 3_2:-62383525 None:intergenic
TCTTATCCTTCAAGTTTATA+AGG 0.274761 3_2:-62385179 None:intergenic
CAACCGTTTCAGTAGGGATT+TGG 0.275099 3_2:-62387509 None:intergenic
AAGAGGAATTTACCAGAAAA+AGG 0.297343 3_2:-62383661 None:intergenic
CGCGAAGTGGTGAAACTAAC+TGG 0.325804 3_2:+62383390 Msa0415860:five_prime_UTR
GTCATCATCATTCTATCAAA+AGG 0.356945 3_2:-62387549 None:intergenic
TATAGGTGGGGTGATGGAAT+TGG 0.358565 3_2:+62383363 Msa0415860:five_prime_UTR
AGATTGAAGGCGAACCTTAC+TGG 0.380241 3_2:+62386245 Msa0415860:intron
CCAATAACAACCTTATCTTC+AGG 0.404699 3_2:+62383476 Msa0415860:CDS
CTGAAGATAAGGTTGTTATT+GGG 0.405745 3_2:-62383475 None:intergenic
GGATTGTTGGAAGGAGCATT+TGG 0.408319 3_2:-62383536 None:intergenic
CTGAAGAATCAGGAATTTAC+CGG 0.413569 3_2:+62386399 Msa0415860:CDS
TGCAAACCTTATAAACTTGA+AGG 0.413975 3_2:+62385173 Msa0415860:CDS
AAGAATAAGAGCTGGATTGT+TGG 0.426768 3_2:-62383452 None:intergenic
ACTTCAACAAGACCCCAAAA+TGG 0.433609 3_2:+62383788 Msa0415860:CDS
ATTCATGTAGTAACCTTTGT+GGG 0.433909 3_2:+62387401 Msa0415860:three_prime_UTR
TGAAAGTGAGATAATGTTAT+AGG 0.440242 3_2:+62383346 None:intergenic
ATTGTCTCCTCACAGATTGA+AGG 0.445126 3_2:+62386232 Msa0415860:intron
GTTGGAAGGAGCATTTGGTT+TGG 0.448463 3_2:-62383531 None:intergenic
GTTGTACAGTCTGAAGAATC+AGG 0.450686 3_2:+62386389 Msa0415860:intron
TATTCATGTAGTAACCTTTG+TGG 0.456061 3_2:+62387400 Msa0415860:three_prime_UTR
GCAGCCGATGAATATCGTTC+TGG 0.459979 3_2:-62384708 None:intergenic
AATCTCCAGGGATCTTTGTA+TGG 0.474697 3_2:-62387347 None:intergenic
TAATGTTATAGGTGGGGTGA+TGG 0.475652 3_2:+62383357 Msa0415860:five_prime_UTR
ACTTGAAGGATAAGAGCAAA+TGG 0.476008 3_2:+62385187 Msa0415860:CDS
AAGAGGGTAAAGATAAGAAT+AGG 0.477402 3_2:-62383835 None:intergenic
TTTCCAAATCCCTACTGAAA+CGG 0.480154 3_2:+62387506 Msa0415860:three_prime_UTR
GGATTACCCTCCTGAAGATA+AGG 0.481706 3_2:-62383486 None:intergenic
TCATCATCATTCTATCAAAA+GGG 0.486686 3_2:-62387548 None:intergenic
TCGTAAATCACCTAATTCAA+TGG 0.488014 3_2:+62386285 Msa0415860:CDS
TTTAGCTGACAAATCTTCAC+TGG 0.488647 3_2:+62385236 Msa0415860:CDS
TTTATAAGGTTTGCACTTGG+AGG 0.505460 3_2:-62385165 None:intergenic
TTCCTCCATACAAAGATCCC+TGG 0.524136 3_2:+62387342 Msa0415860:CDS
TGCATCGAGAACTGAACTCT+CGG 0.532100 3_2:-62385968 None:intergenic
TTATAAGGTTTGCACTTGGA+GGG 0.533271 3_2:-62385164 None:intergenic
TTATTGGGAAGAATAAGAGC+TGG 0.537380 3_2:-62383460 None:intergenic
AATTAGGTGATTTACGAATG+AGG 0.544454 3_2:-62386279 None:intergenic
TAAATGGCTGCATATGAATG+AGG 0.562818 3_2:+62387656 Msa0415860:three_prime_UTR
AAAGAGACAACCGTTTCAGT+AGG 0.566133 3_2:-62387516 None:intergenic
TTTATCATCGGATTGTTGGA+AGG 0.566618 3_2:-62383545 None:intergenic
AAGAGACAACCGTTTCAGTA+GGG 0.567852 3_2:-62387515 None:intergenic
AGGTATTCATAATACCAGTA+AGG 0.568849 3_2:-62386259 None:intergenic
TCTTAAATACCTAGTCATAG+TGG 0.573279 3_2:+62387582 Msa0415860:intron
AAGTGAGATAATGTTATAGG+TGG 0.580126 3_2:+62383349 None:intergenic
ATGGACTGCAAAAGATGTTG+TGG 0.582234 3_2:+62385206 Msa0415860:CDS
CAATCTCATCATTTCCGTCA+CGG 0.585889 3_2:+62385046 Msa0415860:CDS
ACTGAGGGTCGAAGCGCTGA+TGG 0.592389 3_2:-62386750 None:intergenic
ATAAGAGCTGGATTGTTGGA+AGG 0.595730 3_2:-62383448 None:intergenic
AAACTAACTGGAGCTAGCAA+TGG 0.598377 3_2:+62383402 Msa0415860:exon
AAGTTTATAAGGTTTGCACT+TGG 0.598414 3_2:-62385168 None:intergenic
AGTGAGATAATGTTATAGGT+GGG 0.602141 3_2:+62383350 None:intergenic
CTGTTGAAGCAACATAATGC+CGG 0.605398 3_2:-62386418 None:intergenic
GTGAGATAATGTTATAGGTG+GGG 0.605698 3_2:+62383351 None:intergenic
CTCCAGGGATCTTTGTATGG+AGG 0.613390 3_2:-62387344 None:intergenic
AAAGCCAGAACGATATTCAT+CGG 0.615878 3_2:+62384704 Msa0415860:CDS
ATAACAACCTTATCTTCAGG+AGG 0.618318 3_2:+62383479 Msa0415860:CDS
CTCGGCTGAGCGCTGAACTG+AGG 0.632575 3_2:-62385950 None:intergenic
AATTCCTTGCAGCTAATGCG+CGG 0.633327 3_2:+62384988 Msa0415860:intron
GCTTCAACAGCAGAAAGAGA+TGG 0.651152 3_2:+62386431 Msa0415860:CDS
TAATTAGAACCACTATGACT+AGG 0.657996 3_2:-62387591 None:intergenic
TAACAACCTTATCTTCAGGA+GGG 0.664496 3_2:+62383480 Msa0415860:CDS
ACATGAATTTCACCCCACAA+AGG 0.669412 3_2:-62387414 None:intergenic
AGATTGAGGAAATACCGTGA+CGG 0.681795 3_2:-62385060 None:intergenic
TTCATGTAGTAACCTTTGTG+GGG 0.682116 3_2:+62387402 Msa0415860:three_prime_UTR
TTGTTAGAGATAGTGAAGTG+AGG 0.696186 3_2:-62383630 None:intergenic
CTTCGACCCTCAGTCCACAG+TGG 0.711960 3_2:+62386759 Msa0415860:CDS
TGGAATTGGAAATCGCGAAG+TGG 0.727811 3_2:+62383377 Msa0415860:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACGAAAATAAAATAAAA+TGG - chr3_2:62383920-62383939 None:intergenic 10.0%
!! AACTATAAATAAACAAATAA+GGG - chr3_2:62384388-62384407 None:intergenic 10.0%
!! TATTTATAGTTGTTATAAAT+TGG + chr3_2:62384397-62384416 Msa0415860:intron 10.0%
!! AATATCAGAAATAAATTTAA+AGG - chr3_2:62385908-62385927 None:intergenic 10.0%
!! CAACTATAAATAAACAAATA+AGG - chr3_2:62384389-62384408 None:intergenic 15.0%
!!! TAGTTTAATTATAGTTTTGT+TGG - chr3_2:62384588-62384607 None:intergenic 15.0%
!! AAAACTATAATTAAACTAGT+TGG + chr3_2:62384590-62384609 Msa0415860:intron 15.0%
!! AAAATGATCATAAAAAATAC+TGG + chr3_2:62385452-62385471 Msa0415860:intron 15.0%
!!! AAAATATTGATTTAACATGT+TGG - chr3_2:62385513-62385532 None:intergenic 15.0%
!!! ACTAATATGTAAATAGTTTT+AGG - chr3_2:62385693-62385712 None:intergenic 15.0%
!!! TGTTACAAATTTACATATTT+TGG + chr3_2:62386184-62386203 Msa0415860:intron 15.0%
!! AAAAATTATTCATCTATCAA+TGG + chr3_2:62387026-62387045 Msa0415860:intron 15.0%
!! AAAATTATTCATCTATCAAT+GGG + chr3_2:62387027-62387046 Msa0415860:intron 15.0%
!! AAAAAATTATTAGAATGTCA+AGG - chr3_2:62387252-62387271 None:intergenic 15.0%
!!! TAATAATTTTTTATGCAGAT+GGG + chr3_2:62387260-62387279 Msa0415860:intron 15.0%
!! TGAAAAACTTGAAATTTAAA+TGG + chr3_2:62387640-62387659 Msa0415860:three_prime_UTR 15.0%
!!! TGAAAAATCTCTTTTATCAT+CGG - chr3_2:62383560-62383579 None:intergenic 20.0%
!!! TTGAAGACAAAATTTTTAGA+GGG - chr3_2:62383867-62383886 None:intergenic 20.0%
!!! TTTGAAGACAAAATTTTTAG+AGG - chr3_2:62383868-62383887 None:intergenic 20.0%
!!! CTAAAAATTTTGTCTTCAAA+TGG + chr3_2:62383868-62383887 Msa0415860:CDS 20.0%
!! AGATTTAAAGATTAATGAGT+TGG + chr3_2:62384145-62384164 Msa0415860:intron 20.0%
!! TGGAAACAAATTGAAAAAAA+AGG + chr3_2:62384320-62384339 Msa0415860:intron 20.0%
!! ATGTTATTGATATTGTTGAA+TGG + chr3_2:62384461-62384480 Msa0415860:intron 20.0%
!! TGTTATTGATATTGTTGAAT+GGG + chr3_2:62384462-62384481 Msa0415860:intron 20.0%
!! ATTTACTCTTGCTAATAATT+TGG - chr3_2:62384532-62384551 None:intergenic 20.0%
!! AACTCTTTCCATATAATTAA+AGG + chr3_2:62384670-62384689 Msa0415860:intron 20.0%
!! ACTCTTTCCATATAATTAAA+GGG + chr3_2:62384671-62384690 Msa0415860:intron 20.0%
!! ACTAGATATTATCTCTAATT+GGG + chr3_2:62385401-62385420 Msa0415860:intron 20.0%
!!! TAGAAGTTTTGATGTAATAT+TGG + chr3_2:62385640-62385659 Msa0415860:intron 20.0%
!! ATTAGAATTCATATTGTTCT+CGG - chr3_2:62385763-62385782 None:intergenic 20.0%
!!! TTCTTTTTTTAAGGAAATTG+TGG + chr3_2:62386331-62386350 Msa0415860:intron 20.0%
!! AGATCCATAGAAAAAAAATA+AGG + chr3_2:62386630-62386649 Msa0415860:intron 20.0%
!!! TTAGCCTTATTTTTTTTCTA+TGG - chr3_2:62386637-62386656 None:intergenic 20.0%
!!! TCTTTTTTGGAAAAGAATAA+AGG + chr3_2:62387002-62387021 Msa0415860:intron 20.0%
!!! ATGATTTGAAATAGTATGTT+AGG - chr3_2:62387149-62387168 None:intergenic 20.0%
!!! ATTCGTTAATTTTCAAATGA+AGG - chr3_2:62387202-62387221 None:intergenic 20.0%
!!! CTAATAATTTTTTATGCAGA+TGG + chr3_2:62387259-62387278 Msa0415860:intron 20.0%
!!! AATAATTTTTTATGCAGATG+GGG + chr3_2:62387261-62387280 Msa0415860:intron 20.0%
!!! TTGAAGAGTGAAATTTTTAA+TGG + chr3_2:62387453-62387472 Msa0415860:three_prime_UTR 20.0%
! CGAAAATAAAATAAAATGGC+AGG - chr3_2:62383916-62383935 None:intergenic 25.0%
!! TTTAAAGATTAATGAGTTGG+TGG + chr3_2:62384148-62384167 Msa0415860:intron 25.0%
!! AATGAACTTCTTTTCTCAAT+GGG - chr3_2:62384437-62384456 None:intergenic 25.0%
!! TAATGAACTTCTTTTCTCAA+TGG - chr3_2:62384438-62384457 None:intergenic 25.0%
! ATAATTTGGAGATGTGTTAA+TGG - chr3_2:62384518-62384537 None:intergenic 25.0%
!!! AAGTTTTCATTGATTGTTGT+AGG + chr3_2:62384642-62384661 Msa0415860:intron 25.0%
! GATTCTACCCTTTAATTATA+TGG - chr3_2:62384681-62384700 None:intergenic 25.0%
!!! AGCAATTTTAATCCAGAAAA+AGG - chr3_2:62384963-62384982 None:intergenic 25.0%
!!! GAAAATGATAAAGCATTGAA+TGG - chr3_2:62385114-62385133 None:intergenic 25.0%
!! TTTTCCCATTAAATTCAGAT+AGG + chr3_2:62385141-62385160 Msa0415860:intron 25.0%
!! TCTTATCCTTCAAGTTTATA+AGG - chr3_2:62385182-62385201 None:intergenic 25.0%
! GATAATATCTAGTGAGTAAT+GGG - chr3_2:62385394-62385413 None:intergenic 25.0%
! AGATAATATCTAGTGAGTAA+TGG - chr3_2:62385395-62385414 None:intergenic 25.0%
! CACTAGATATTATCTCTAAT+TGG + chr3_2:62385400-62385419 Msa0415860:intron 25.0%
!! ATCATTTTATATCGCTTATC+TGG - chr3_2:62385440-62385459 None:intergenic 25.0%
! AATATTGGATACAAGAATGA+AGG + chr3_2:62385655-62385674 Msa0415860:intron 25.0%
! ATATTGGATACAAGAATGAA+GGG + chr3_2:62385656-62385675 Msa0415860:intron 25.0%
! GAGAACAATATGAATTCTAA+TGG + chr3_2:62385762-62385781 Msa0415860:intron 25.0%
!! ACAAACAAATCACATGTTTT+GGG - chr3_2:62386131-62386150 None:intergenic 25.0%
!! AACAAACAAATCACATGTTT+TGG - chr3_2:62386132-62386151 None:intergenic 25.0%
! GAAATACTTACCATTGAATT+AGG - chr3_2:62386298-62386317 None:intergenic 25.0%
!!! TGGTGCATTTTCTTTTTTTA+AGG + chr3_2:62386322-62386341 Msa0415860:intron 25.0%
! AAAGTAGGAATAATTTGAGA+GGG - chr3_2:62386461-62386480 None:intergenic 25.0%
! TAAAGTAGGAATAATTTGAG+AGG - chr3_2:62386462-62386481 None:intergenic 25.0%
! TAATAATTGTGCTTGATTTC+AGG + chr3_2:62386716-62386735 Msa0415860:intron 25.0%
! GTTCTCAGTAAGAATTTATA+TGG - chr3_2:62386972-62386991 None:intergenic 25.0%
!!! CCTTTGAACAATATTTTGAT+GGG - chr3_2:62387175-62387194 None:intergenic 25.0%
!!! TCCTTTGAACAATATTTTGA+TGG - chr3_2:62387176-62387195 None:intergenic 25.0%
! ACTCTTCAAAGAACATAATA+TGG - chr3_2:62387442-62387461 None:intergenic 25.0%
! TCATCATCATTCTATCAAAA+GGG - chr3_2:62387551-62387570 None:intergenic 25.0%
! CTGAAGATAAGGTTGTTATT+GGG - chr3_2:62383478-62383497 None:intergenic 30.0%
!!! TTTGGTTTTGGTTTTGGTTA+AGG - chr3_2:62383510-62383529 None:intergenic 30.0%
!!! TTTGGTTTTGGTTTTGGTTT+TGG - chr3_2:62383516-62383535 None:intergenic 30.0%
!!! ATTTGGTTTGGTTTTGGTTT+TGG - chr3_2:62383522-62383541 None:intergenic 30.0%
! TTCTTCTTCTTCTTCTAGAA+GGG + chr3_2:62383588-62383607 Msa0415860:CDS 30.0%
AAGAGGAATTTACCAGAAAA+AGG - chr3_2:62383664-62383683 None:intergenic 30.0%
AAGCAATAAATGCAAGAAAG+AGG - chr3_2:62383681-62383700 None:intergenic 30.0%
!! TCCAAAAAAGAAGCCATTTT+GGG - chr3_2:62383804-62383823 None:intergenic 30.0%
! ATCCAAAAAAGAAGCCATTT+TGG - chr3_2:62383805-62383824 None:intergenic 30.0%
AAGAGGGTAAAGATAAGAAT+AGG - chr3_2:62383838-62383857 None:intergenic 30.0%
TAAAATAAAATGGCAGGCAA+AGG - chr3_2:62383910-62383929 None:intergenic 30.0%
! GTTTCTGTTATAGCTTTTCT+AGG - chr3_2:62384004-62384023 None:intergenic 30.0%
! AATTTGTTTCCAGTTTAAGC+GGG - chr3_2:62384312-62384331 None:intergenic 30.0%
! CAATTTGTTTCCAGTTTAAG+CGG - chr3_2:62384313-62384332 None:intergenic 30.0%
! TGTGTTAATGGCTAGTTATA+TGG - chr3_2:62384506-62384525 None:intergenic 30.0%
AGCAAGAGTAAATAATGCTT+TGG + chr3_2:62384539-62384558 Msa0415860:intron 30.0%
AACAATCAATGAAAACTTGC+AGG - chr3_2:62384640-62384659 None:intergenic 30.0%
CAAAAAAACTTACGAGAAAG+TGG - chr3_2:62384735-62384754 None:intergenic 30.0%
!!! TTTTTTTGTCTTCCTTTGCA+AGG + chr3_2:62384747-62384766 Msa0415860:intron 30.0%
AAGTTTATAAGGTTTGCACT+TGG - chr3_2:62385171-62385190 None:intergenic 30.0%
TGCAAACCTTATAAACTTGA+AGG + chr3_2:62385173-62385192 Msa0415860:CDS 30.0%
GTTACTCATGCTATTCTTAT+TGG + chr3_2:62385265-62385284 Msa0415860:intron 30.0%
AACTATAGTTTAACCATGTG+GGG - chr3_2:62385589-62385608 None:intergenic 30.0%
CAACTATAGTTTAACCATGT+GGG - chr3_2:62385590-62385609 None:intergenic 30.0%
TCAACTATAGTTTAACCATG+TGG - chr3_2:62385591-62385610 None:intergenic 30.0%
CCTAAAGAATACAACTTCAA+AGG - chr3_2:62385823-62385842 None:intergenic 30.0%
!! CCTTTGAAGTTGTATTCTTT+AGG + chr3_2:62385820-62385839 Msa0415860:intron 30.0%
AGGTATTCATAATACCAGTA+AGG - chr3_2:62386262-62386281 None:intergenic 30.0%
AATTAGGTGATTTACGAATG+AGG - chr3_2:62386282-62386301 None:intergenic 30.0%
TCGTAAATCACCTAATTCAA+TGG + chr3_2:62386285-62386304 Msa0415860:CDS 30.0%
AAAAAAGAAAATGCACCAAG+AGG - chr3_2:62386320-62386339 None:intergenic 30.0%
! GGTGTATGTGATTTTTACTT+TGG + chr3_2:62386352-62386371 Msa0415860:intron 30.0%
AATTCACATTAGAATGCACA+AGG - chr3_2:62386512-62386531 None:intergenic 30.0%
TTTCAAGCAATATTATGCAG+AGG - chr3_2:62386538-62386557 None:intergenic 30.0%
ATACTTGTTCCAGAGATAAA+AGG + chr3_2:62386605-62386624 Msa0415860:intron 30.0%
!! AAGTTGACTTGACAATAGTT+TGG + chr3_2:62386942-62386961 Msa0415860:intron 30.0%
TTCAGTAGAAAATGAAGACT+TGG - chr3_2:62387111-62387130 None:intergenic 30.0%
CCCATCAAAATATTGTTCAA+AGG + chr3_2:62387172-62387191 Msa0415860:intron 30.0%
! ATTTTTCACCAAAATCTCCA+GGG - chr3_2:62387362-62387381 None:intergenic 30.0%
TATTCATGTAGTAACCTTTG+TGG + chr3_2:62387400-62387419 Msa0415860:three_prime_UTR 30.0%
ATTCATGTAGTAACCTTTGT+GGG + chr3_2:62387401-62387420 Msa0415860:three_prime_UTR 30.0%
GTCATCATCATTCTATCAAA+AGG - chr3_2:62387552-62387571 None:intergenic 30.0%
TCTTAAATACCTAGTCATAG+TGG + chr3_2:62387582-62387601 Msa0415860:intron 30.0%
TAATTAGAACCACTATGACT+AGG - chr3_2:62387594-62387613 None:intergenic 30.0%
!! CAATGGTTTTACACTCTCTA+TGG + chr3_2:62383419-62383438 Msa0415860:exon 35.0%
AAGAATAAGAGCTGGATTGT+TGG - chr3_2:62383455-62383474 None:intergenic 35.0%
TTATTGGGAAGAATAAGAGC+TGG - chr3_2:62383463-62383482 None:intergenic 35.0%
CCTGAAGATAAGGTTGTTAT+TGG - chr3_2:62383479-62383498 None:intergenic 35.0%
CCAATAACAACCTTATCTTC+AGG + chr3_2:62383476-62383495 Msa0415860:CDS 35.0%
ATAACAACCTTATCTTCAGG+AGG + chr3_2:62383479-62383498 Msa0415860:CDS 35.0%
TAACAACCTTATCTTCAGGA+GGG + chr3_2:62383480-62383499 Msa0415860:CDS 35.0%
TTTATCATCGGATTGTTGGA+AGG - chr3_2:62383548-62383567 None:intergenic 35.0%
! CTCTTTTATCATCGGATTGT+TGG - chr3_2:62383552-62383571 None:intergenic 35.0%
CTTCTTCTTCTTCTTCTAGA+AGG + chr3_2:62383587-62383606 Msa0415860:CDS 35.0%
TTGTTAGAGATAGTGAAGTG+AGG - chr3_2:62383633-62383652 None:intergenic 35.0%
!! CCAAAAAAGAAGCCATTTTG+GGG - chr3_2:62383803-62383822 None:intergenic 35.0%
TCTTCTCTCTACATGAAAGT+GGG - chr3_2:62384043-62384062 None:intergenic 35.0%
TTTCATGTAGAGAGAAGAGT+AGG + chr3_2:62384045-62384064 Msa0415860:intron 35.0%
AGTAAGGAGAGTAGATTAGA+TGG + chr3_2:62384082-62384101 Msa0415860:intron 35.0%
! AAGTCTTATCCCATTAAGTG+TGG - chr3_2:62384217-62384236 None:intergenic 35.0%
AAAGCCAGAACGATATTCAT+CGG + chr3_2:62384704-62384723 Msa0415860:CDS 35.0%
! GCTTTGTAGTTTCCTTTTTC+TGG + chr3_2:62384948-62384967 Msa0415860:intron 35.0%
! ATGCAACAAGTTTGAGATTG+AGG - chr3_2:62385077-62385096 None:intergenic 35.0%
AGGGCCTATCTGAATTTAAT+GGG - chr3_2:62385148-62385167 None:intergenic 35.0%
TTATAAGGTTTGCACTTGGA+GGG - chr3_2:62385167-62385186 None:intergenic 35.0%
TTTATAAGGTTTGCACTTGG+AGG - chr3_2:62385168-62385187 None:intergenic 35.0%
ACTTGAAGGATAAGAGCAAA+TGG + chr3_2:62385187-62385206 Msa0415860:CDS 35.0%
TTTAGCTGACAAATCTTCAC+TGG + chr3_2:62385236-62385255 Msa0415860:CDS 35.0%
TTGAAGAAACAGTAGCTATC+GGG - chr3_2:62385336-62385355 None:intergenic 35.0%
CTTGAAGAAACAGTAGCTAT+CGG - chr3_2:62385337-62385356 None:intergenic 35.0%
! TATCTCTAATTGGGAAGCAT+AGG + chr3_2:62385410-62385429 Msa0415860:intron 35.0%
!!! AGTCAAGCCTTTTTAGCTTT+TGG + chr3_2:62385710-62385729 Msa0415860:intron 35.0%
!!! GTCAAGCCTTTTTAGCTTTT+GGG + chr3_2:62385711-62385730 Msa0415860:intron 35.0%
TTGACACCCAAAAGCTAAAA+AGG - chr3_2:62385720-62385739 None:intergenic 35.0%
TTTGAGCACTTGTATATGCA+AGG + chr3_2:62385789-62385808 Msa0415860:intron 35.0%
TGAAGTTGTATTCTTTAGGC+AGG + chr3_2:62385824-62385843 Msa0415860:intron 35.0%
TTGTATTCTTTAGGCAGGAT+TGG + chr3_2:62385829-62385848 Msa0415860:intron 35.0%
CAATGGTAAGTATTTCCTCT+TGG + chr3_2:62386302-62386321 Msa0415860:intron 35.0%
CTGAAGAATCAGGAATTTAC+CGG + chr3_2:62386399-62386418 Msa0415860:CDS 35.0%
CACGTTTGCAATACTAAAGT+AGG - chr3_2:62386476-62386495 None:intergenic 35.0%
TATTGCTTGAAAGCTCTTGT+TGG + chr3_2:62386546-62386565 Msa0415860:intron 35.0%
CAAGTATGACTCTGATTGAA+GGG - chr3_2:62386592-62386611 None:intergenic 35.0%
ACAAGTATGACTCTGATTGA+AGG - chr3_2:62386593-62386612 None:intergenic 35.0%
! TGGATCTTTCCTTTTATCTC+TGG - chr3_2:62386617-62386636 None:intergenic 35.0%
TTCTTACTGAGAACATGTGA+CGG + chr3_2:62386978-62386997 Msa0415860:intron 35.0%
!!! AACATGTGACGGTTCTTTTT+TGG + chr3_2:62386989-62387008 Msa0415860:intron 35.0%
!!! CTCACAGTCTTTTCAAGTAA+AGG - chr3_2:62387287-62387306 None:intergenic 35.0%
! GGAGGAACATAATTTTCTGT+AGG - chr3_2:62387329-62387348 None:intergenic 35.0%
! GATTTTTCACCAAAATCTCC+AGG - chr3_2:62387363-62387382 None:intergenic 35.0%
TTCATGTAGTAACCTTTGTG+GGG + chr3_2:62387402-62387421 Msa0415860:three_prime_UTR 35.0%
TTTCCAAATCCCTACTGAAA+CGG + chr3_2:62387506-62387525 Msa0415860:three_prime_UTR 35.0%
TAAATGGCTGCATATGAATG+AGG + chr3_2:62387656-62387675 Msa0415860:three_prime_UTR 35.0%
TAATGTTATAGGTGGGGTGA+TGG + chr3_2:62383357-62383376 Msa0415860:five_prime_UTR 40.0%
AAACTAACTGGAGCTAGCAA+TGG + chr3_2:62383402-62383421 Msa0415860:exon 40.0%
ATAAGAGCTGGATTGTTGGA+AGG - chr3_2:62383451-62383470 None:intergenic 40.0%
!!! AGGAGCATTTGGTTTGGTTT+TGG - chr3_2:62383528-62383547 None:intergenic 40.0%
!! AGAAGGGATTTTGTGCTGTT+AGG + chr3_2:62383604-62383623 Msa0415860:CDS 40.0%
! ACAACATGCGTTCCTTTTTC+TGG + chr3_2:62383649-62383668 Msa0415860:CDS 40.0%
GCAAAGTCAGTCTCAATTGT+AGG - chr3_2:62383726-62383745 None:intergenic 40.0%
TATTCTGTCTTGTCTTGCAG+TGG + chr3_2:62383746-62383765 Msa0415860:intron 40.0%
ACTTCAACAAGACCCCAAAA+TGG + chr3_2:62383788-62383807 Msa0415860:CDS 40.0%
!!! CCCCAAAATGGCTTCTTTTT+TGG + chr3_2:62383800-62383819 Msa0415860:CDS 40.0%
!! TTTTAGAGGGAAGCTCAAGA+GGG - chr3_2:62383854-62383873 None:intergenic 40.0%
!! TTTTTAGAGGGAAGCTCAAG+AGG - chr3_2:62383855-62383874 None:intergenic 40.0%
CTACATGAAAGTGGGAAAAG+AGG - chr3_2:62384035-62384054 None:intergenic 40.0%
CTCTTCTCTCTACATGAAAG+TGG - chr3_2:62384044-62384063 None:intergenic 40.0%
GGCTTGTAGATTCTGTAGTA+AGG + chr3_2:62384066-62384085 Msa0415860:intron 40.0%
AAGGAGAGTAGATTAGATGG+AGG + chr3_2:62384085-62384104 Msa0415860:intron 40.0%
CTTATCCCATTAAGTGTGGT+CGG - chr3_2:62384213-62384232 None:intergenic 40.0%
GGCAAGAGAGAAAACAAAAC+AGG - chr3_2:62384258-62384277 None:intergenic 40.0%
TTCTCTCTTGCCATCCAAAA+AGG + chr3_2:62384266-62384285 Msa0415860:intron 40.0%
TAATGCTTTGGCCATAGATG+TGG + chr3_2:62384551-62384570 Msa0415860:intron 40.0%
AATGCTTTGGCCATAGATGT+GGG + chr3_2:62384552-62384571 Msa0415860:intron 40.0%
AAAACTTGCAGGCAACAAGA+GGG - chr3_2:62384629-62384648 None:intergenic 40.0%
GATAAACTCTTGCCTTGCAA+AGG - chr3_2:62384762-62384781 None:intergenic 40.0%
CAATCTCATCATTTCCGTCA+CGG + chr3_2:62385046-62385065 Msa0415860:CDS 40.0%
AGATTGAGGAAATACCGTGA+CGG - chr3_2:62385063-62385082 None:intergenic 40.0%
GAGGGCCTATCTGAATTTAA+TGG - chr3_2:62385149-62385168 None:intergenic 40.0%
! ATGGACTGCAAAAGATGTTG+TGG + chr3_2:62385206-62385225 Msa0415860:CDS 40.0%
ACAGACCAGAGAGTTAAGAA+TGG + chr3_2:62385561-62385580 Msa0415860:intron 40.0%
TCCAACTGTTTACGTCACAA+AGG + chr3_2:62385854-62385873 Msa0415860:intron 40.0%
ACCTTTGTGACGTAAACAGT+TGG - chr3_2:62385858-62385877 None:intergenic 40.0%
GGATTTACACTACAGATCAC+AGG - chr3_2:62385887-62385906 None:intergenic 40.0%
ATTGTCTCCTCACAGATTGA+AGG + chr3_2:62386232-62386251 Msa0415860:intron 40.0%
TACTTTGGACTTGTGACTGA+TGG + chr3_2:62386367-62386386 Msa0415860:intron 40.0%
GTTGTACAGTCTGAAGAATC+AGG + chr3_2:62386389-62386408 Msa0415860:intron 40.0%
CTGTTGAAGCAACATAATGC+CGG - chr3_2:62386421-62386440 None:intergenic 40.0%
!!! TTTTTTCCACTGTGGACTGA+GGG - chr3_2:62386768-62386787 None:intergenic 40.0%
AATCTCCAGGGATCTTTGTA+TGG - chr3_2:62387350-62387369 None:intergenic 40.0%
! ACAAAGATCCCTGGAGATTT+TGG + chr3_2:62387351-62387370 Msa0415860:CDS 40.0%
ACATGAATTTCACCCCACAA+AGG - chr3_2:62387417-62387436 None:intergenic 40.0%
AAGAGACAACCGTTTCAGTA+GGG - chr3_2:62387518-62387537 None:intergenic 40.0%
AAAGAGACAACCGTTTCAGT+AGG - chr3_2:62387519-62387538 None:intergenic 40.0%
ACTGAAACGGTTGTCTCTTT+AGG + chr3_2:62387519-62387538 Msa0415860:three_prime_UTR 40.0%
CTGAAACGGTTGTCTCTTTA+GGG + chr3_2:62387520-62387539 Msa0415860:three_prime_UTR 40.0%
!! TATAGGTGGGGTGATGGAAT+TGG + chr3_2:62383363-62383382 Msa0415860:five_prime_UTR 45.0%
TGGAATTGGAAATCGCGAAG+TGG + chr3_2:62383377-62383396 Msa0415860:five_prime_UTR 45.0%
GGATTACCCTCCTGAAGATA+AGG - chr3_2:62383489-62383508 None:intergenic 45.0%
!! GTTGGAAGGAGCATTTGGTT+TGG - chr3_2:62383534-62383553 None:intergenic 45.0%
!! GGATTGTTGGAAGGAGCATT+TGG - chr3_2:62383539-62383558 None:intergenic 45.0%
!! AGGGATTTTGTGCTGTTAGG+AGG + chr3_2:62383607-62383626 Msa0415860:CDS 45.0%
ATGTAGCCGACCACACTTAA+TGG + chr3_2:62384204-62384223 Msa0415860:intron 45.0%
TGTAGCCGACCACACTTAAT+GGG + chr3_2:62384205-62384224 Msa0415860:intron 45.0%
CACTAGTGATCCCACATCTA+TGG - chr3_2:62384565-62384584 None:intergenic 45.0%
AAACTTGCAGGCAACAAGAG+GGG - chr3_2:62384628-62384647 None:intergenic 45.0%
GAAAACTTGCAGGCAACAAG+AGG - chr3_2:62384630-62384649 None:intergenic 45.0%
AATTCCTTGCAGCTAATGCG+CGG + chr3_2:62384988-62385007 Msa0415860:intron 45.0%
! AGTAGCTATCGGGTATTGCT+CGG - chr3_2:62385326-62385345 None:intergenic 45.0%
TGCATCGAGAACTGAACTCT+CGG - chr3_2:62385971-62385990 None:intergenic 45.0%
AGATTGAAGGCGAACCTTAC+TGG + chr3_2:62386245-62386264 Msa0415860:intron 45.0%
GCTTCAACAGCAGAAAGAGA+TGG + chr3_2:62386431-62386450 Msa0415860:CDS 45.0%
TGACTCTGATTGAAGGGAAG+AGG - chr3_2:62386586-62386605 None:intergenic 45.0%
!!! CTTTTTTCCACTGTGGACTG+AGG - chr3_2:62386769-62386788 None:intergenic 45.0%
!!! GAGGGTACTTTTTTCCACTG+TGG - chr3_2:62386776-62386795 None:intergenic 45.0%
CTCTCTCTCTCTCTCTCATA+TGG + chr3_2:62386803-62386822 Msa0415860:intron 45.0%
TTCCTCCATACAAAGATCCC+TGG + chr3_2:62387342-62387361 Msa0415860:CDS 45.0%
CAACCGTTTCAGTAGGGATT+TGG - chr3_2:62387512-62387531 None:intergenic 45.0%
!! AAAATAATAAATATTTGTAT+TGG + chr3_2:62386656-62386675 Msa0415860:intron 5.0%
CGCGAAGTGGTGAAACTAAC+TGG + chr3_2:62383390-62383409 Msa0415860:five_prime_UTR 50.0%
!! AGCTTGTTGCCCGCTTAAAC+TGG + chr3_2:62384300-62384319 Msa0415860:intron 50.0%
GCAGCCGATGAATATCGTTC+TGG - chr3_2:62384711-62384730 None:intergenic 50.0%
! TAGCTATCGGGTATTGCTCG+GGG - chr3_2:62385324-62385343 None:intergenic 50.0%
! GTAGCTATCGGGTATTGCTC+GGG - chr3_2:62385325-62385344 None:intergenic 50.0%
GGGCACCATTCTTAACTCTC+TGG - chr3_2:62385569-62385588 None:intergenic 50.0%
GTTAAGAATGGTGCCCCACA+TGG + chr3_2:62385573-62385592 Msa0415860:intron 50.0%
ACATGCTCACGTGTCTGTGT+TGG - chr3_2:62386039-62386058 None:intergenic 50.0%
AGGTTCGCCTTCAATCTGTG+AGG - chr3_2:62386242-62386261 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr3_2:62386794-62386813 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr3_2:62386793-62386812 None:intergenic 50.0%
TAGACGCAGTTGATCAGTGG+CGG - chr3_2:62386915-62386934 None:intergenic 50.0%
AGCTAGACGCAGTTGATCAG+TGG - chr3_2:62386918-62386937 None:intergenic 50.0%
CTCCAGGGATCTTTGTATGG+AGG - chr3_2:62387347-62387366 None:intergenic 50.0%
TGTCTTGCAGTGGCTCTTGC+TGG + chr3_2:62383756-62383775 Msa0415860:intron 55.0%
TGCCATCCAAAAAGGCCCAG+CGG + chr3_2:62384274-62384293 Msa0415860:intron 55.0%
! ATCAGTGGCGGAGGAAATGC+TGG - chr3_2:62386903-62386922 None:intergenic 55.0%
!! ACTGAGGGTCGAAGCGCTGA+TGG - chr3_2:62386753-62386772 None:intergenic 60.0%
CTTCGACCCTCAGTCCACAG+TGG + chr3_2:62386759-62386778 Msa0415860:CDS 60.0%
ACGCAGTTGATCAGTGGCGG+AGG - chr3_2:62386912-62386931 None:intergenic 60.0%
! CGCCGCTGGGCCTTTTTGGA+TGG - chr3_2:62384279-62384298 None:intergenic 65.0%
GCAGCCGCGCATTAGCTGCA+AGG - chr3_2:62384995-62385014 None:intergenic 65.0%
!! CTCGGCTGAGCGCTGAACTG+AGG - chr3_2:62385953-62385972 None:intergenic 65.0%
! GCTGCGCCGCTGGGCCTTTT+TGG - chr3_2:62384283-62384302 None:intergenic 70.0%
GGGCAACAAGCTGCGCCGCT+GGG - chr3_2:62384292-62384311 None:intergenic 70.0%
CGGGCAACAAGCTGCGCCGC+TGG - chr3_2:62384293-62384312 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 62383357 62387686 62383357 ID=Msa0415860;Name=Msa0415860
chr3_2 mRNA 62383357 62387686 62383357 ID=Msa0415860-mRNA-1;Parent=Msa0415860;Name=Msa0415860-mRNA-1;_AED=0.18;_eAED=0.18;_QI=64|1|1|1|0.9|0.81|11|280|304
chr3_2 exon 62383357 62383670 62383357 ID=Msa0415860-mRNA-1:exon:13380;Parent=Msa0415860-mRNA-1
chr3_2 exon 62383766 62383889 62383766 ID=Msa0415860-mRNA-1:exon:13381;Parent=Msa0415860-mRNA-1
chr3_2 exon 62384692 62384741 62384692 ID=Msa0415860-mRNA-1:exon:13382;Parent=Msa0415860-mRNA-1
chr3_2 exon 62385000 62385067 62385000 ID=Msa0415860-mRNA-1:exon:13383;Parent=Msa0415860-mRNA-1
chr3_2 exon 62385159 62385257 62385159 ID=Msa0415860-mRNA-1:exon:13384;Parent=Msa0415860-mRNA-1
chr3_2 exon 62385943 62386002 62385943 ID=Msa0415860-mRNA-1:exon:13385;Parent=Msa0415860-mRNA-1
chr3_2 exon 62386247 62386306 62386247 ID=Msa0415860-mRNA-1:exon:13386;Parent=Msa0415860-mRNA-1
chr3_2 exon 62386398 62386452 62386398 ID=Msa0415860-mRNA-1:exon:13387;Parent=Msa0415860-mRNA-1
chr3_2 exon 62386738 62386787 62386738 ID=Msa0415860-mRNA-1:exon:13388;Parent=Msa0415860-mRNA-1
chr3_2 exon 62387278 62387558 62387278 ID=Msa0415860-mRNA-1:exon:13389;Parent=Msa0415860-mRNA-1
chr3_2 exon 62387589 62387686 62387589 ID=Msa0415860-mRNA-1:exon:13390;Parent=Msa0415860-mRNA-1
chr3_2 five_prime_UTR 62383357 62383420 62383357 ID=Msa0415860-mRNA-1:five_prime_utr;Parent=Msa0415860-mRNA-1
chr3_2 CDS 62383421 62383670 62383421 ID=Msa0415860-mRNA-1:cds;Parent=Msa0415860-mRNA-1
chr3_2 CDS 62383766 62383889 62383766 ID=Msa0415860-mRNA-1:cds;Parent=Msa0415860-mRNA-1
chr3_2 CDS 62384692 62384741 62384692 ID=Msa0415860-mRNA-1:cds;Parent=Msa0415860-mRNA-1
chr3_2 CDS 62385000 62385067 62385000 ID=Msa0415860-mRNA-1:cds;Parent=Msa0415860-mRNA-1
chr3_2 CDS 62385159 62385257 62385159 ID=Msa0415860-mRNA-1:cds;Parent=Msa0415860-mRNA-1
chr3_2 CDS 62385943 62386002 62385943 ID=Msa0415860-mRNA-1:cds;Parent=Msa0415860-mRNA-1
chr3_2 CDS 62386247 62386306 62386247 ID=Msa0415860-mRNA-1:cds;Parent=Msa0415860-mRNA-1
chr3_2 CDS 62386398 62386452 62386398 ID=Msa0415860-mRNA-1:cds;Parent=Msa0415860-mRNA-1
chr3_2 CDS 62386738 62386787 62386738 ID=Msa0415860-mRNA-1:cds;Parent=Msa0415860-mRNA-1
chr3_2 CDS 62387278 62387376 62387278 ID=Msa0415860-mRNA-1:cds;Parent=Msa0415860-mRNA-1
chr3_2 three_prime_UTR 62387377 62387558 62387377 ID=Msa0415860-mRNA-1:three_prime_utr;Parent=Msa0415860-mRNA-1
chr3_2 three_prime_UTR 62387589 62387686 62387589 ID=Msa0415860-mRNA-1:three_prime_utr;Parent=Msa0415860-mRNA-1
Gene Sequence

>Msa0415860

ATGGTTTTACACTCTCTATGGCTATGTCCTTCCAACAATCCAGCTCTTATTCTTCCCAATAACAACCTTATCTTCAGGAGGGTAATCCTTAACCAAAACCAAAACCAAAACCAAACCAAATGCTCCTTCCAACAATCCGATGATAAAAGAGATTTTTCATCATCATCTTCTTCTTCTTCTTCTAGAAGGGATTTTGTGCTGTTAGGAGGCCTCACTTCACTATCTCTAACAACATGCGTTCCTTTTTCTGTGGCTCTTGCTGGAGATGAAGAACTTCAACAAGACCCCAAAATGGCTTCTTTTTTGGATGAAGTCAATGCCTATTCTTATCTTTACCCTCTTGAGCTTCCCTCTAAAAATTTTGTCTTCAAATGGGTAGAATCTCGAAAGCCAGAACGATATTCATCGGCTGCACCACTTTCTCCTAATGCGCGGCTGCGTATTGTGTCTGAACGTGTTGATCTCTTTGACAATCTCATCATTTCCGTCACGATAGGCCCTCCAAGTGCAAACCTTATAAACTTGAAGGATAAGAGCAAATGGACTGCAAAAGATGTTGTGGATTCAGTTTTAGCTGACAAATCTTCACTGCGAGTTACCTCAGTTCAGCGCTCAGCCGAGAGTTCAGTTCTCGATGCACATTCTGATGAAATTGAAGGCGAACCTTACTGGTATTATGAATACCTCATTCGTAAATCACCTAATTCAATGTCTGAAGAATCAGGAATTTACCGGCATTATGTTGCTTCAACAGCAGAAAGAGATGGTTATTTGTACTCCATCAGCGCTTCGACCCTCAGTCCACAGTGGAAAAAAATGGGGCCTTTACTTGAAAAGACTGTGAGTTCGTTTCGACTTGTCAGTCCTACAGAAAATTATGTTCCTCCATACAAAGATCCCTGGAGATTTTGGTGA

Protein sequence

>Msa0415860

MVLHSLWLCPSNNPALILPNNNLIFRRVILNQNQNQNQTKCSFQQSDDKRDFSSSSSSSSSRRDFVLLGGLTSLSLTTCVPFSVALAGDEELQQDPKMASFLDEVNAYSYLYPLELPSKNFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDLFDNLIISVTIGPPSANLINLKDKSKWTAKDVVDSVLADKSSLRVTSVQRSAESSVLDAHSDEIEGEPYWYYEYLIRKSPNSMSEESGIYRHYVASTAERDGYLYSISASTLSPQWKKMGPLLEKTVSSFRLVSPTENYVPPYKDPWRFW*