AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1092430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1092430 MtrunA17_Chr7g0228371 79.608 255 22 2 1 227 1 253 3.56e-138 387
Msa1092430 MtrunA17_Chr4g0003601 34.677 124 67 1 72 181 119 242 1.18e-17 79.3
Msa1092430 MtrunA17_Chr2g0332821 27.551 196 108 3 30 191 46 241 1.96e-15 73.2
Msa1092430 MtrunA17_Chr2g0332811 34.426 122 66 1 75 182 122 243 4.94e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1092430 AT5G14660.1 58.051 236 66 3 19 226 42 272 3.26e-89 264
Msa1092430 AT5G14660.3 58.051 236 66 3 19 226 42 272 3.26e-89 264
Msa1092430 AT5G14660.2 58.051 236 66 3 19 226 42 272 3.26e-89 264
Msa1092430 AT1G15390.1 36.885 122 63 1 75 182 124 245 1.34e-18 82.4

Find 72 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGGTCCCTTCTGGTTT+TGG 0.217039 7_3:-9183915 Msa1092430:CDS
TCATCACTTAGCGGAATTTC+TGG 0.218170 7_3:-9183772 Msa1092430:three_prime_UTR
AGGAATTAATGTTCAACTTA+TGG 0.242265 7_3:-9187431 Msa1092430:CDS
CATCATTAACAAACTCAAAA+TGG 0.289466 7_3:+9183464 None:intergenic
TAGTATTCGTGGACAGTTAC+AGG 0.295514 7_3:-9185264 Msa1092430:intron
GCATCAATCTTCACAGATTC+TGG 0.306156 7_3:+9186610 None:intergenic
CATTACCCTTTCACAATTTG+TGG 0.326917 7_3:-9190020 Msa1092430:five_prime_UTR
AGAGCATTCATTATTTATTC+AGG 0.328146 7_3:-9183525 Msa1092430:three_prime_UTR
ATTGAGTATTTACTAACTCT+TGG 0.377226 7_3:+9187355 None:intergenic
TTTCCTCATACTTCATTTCA+AGG 0.393212 7_3:+9183982 None:intergenic
TTGAGTATTTACTAACTCTT+GGG 0.412246 7_3:+9187356 None:intergenic
TTGTACAGAACTGATGGTAT+TGG 0.415936 7_3:-9187472 Msa1092430:intron
GGCTGGAGGAGGAGAGAGTC+AGG 0.424664 7_3:+9189903 None:intergenic
GTCAGGTGGAAGAAGCGGTT+TGG 0.434099 7_3:+9189920 None:intergenic
TAACAAACTCAAAATGGAAA+TGG 0.439330 7_3:+9183470 None:intergenic
TTGAACATTAATTCCTACTT+GGG 0.445401 7_3:+9187438 None:intergenic
AACCCTCATTGAAGAGTGTT+CGG 0.455481 7_3:+9187329 None:intergenic
GTTGAACATTAATTCCTACT+TGG 0.459640 7_3:+9187437 None:intergenic
TTGGGAAATCATGATCTTCA+AGG 0.467476 7_3:-9183896 Msa1092430:intron
GGACTTGGTGCGGCTGGAGG+AGG 0.469407 7_3:+9189892 None:intergenic
ATTTATTCAGGTTGCTCTGA+AGG 0.474386 7_3:-9183513 Msa1092430:three_prime_UTR
CCTTCACCACGTTCGCCTAC+CGG 0.476721 7_3:+9187400 None:intergenic
CAGTCATTCTCTCAAAGAAA+AGG 0.478584 7_3:+9185300 None:intergenic
TATAAGTTTGTAACTAGTAG+TGG 0.480122 7_3:-9183573 Msa1092430:three_prime_UTR
CAAGTGCAGAACAGCGGTAG+TGG 0.481987 7_3:+9189951 None:intergenic
GAAGTTCTTGATAGTATTCG+TGG 0.485870 7_3:-9185275 Msa1092430:CDS
ATTGTCAGAGAAGCTGAATA+TGG 0.487645 7_3:-9183723 Msa1092430:three_prime_UTR
TCATGTTGAAATATCCGTGC+TGG 0.495228 7_3:+9186541 None:intergenic
CCTTTCACAATTTGTGGCGA+TGG 0.501479 7_3:-9190014 Msa1092430:exon
AGAACAAGAAAGGTCCCTTC+TGG 0.507355 7_3:-9183921 Msa1092430:CDS
TTTACGTCAGCATTAATGCC+GGG 0.511687 7_3:+9187295 None:intergenic
GGCCCTTGAAATGAAGTATG+AGG 0.512810 7_3:-9183985 Msa1092430:CDS
TTCCTCATACTTCATTTCAA+GGG 0.514907 7_3:+9183983 None:intergenic
CAGAACAGCGGTAGTGGTGG+TGG 0.518553 7_3:+9189957 None:intergenic
AGAAAGTCGCAGAACAAGAA+AGG 0.519818 7_3:-9183931 Msa1092430:CDS
ACATGAATTTGACCATCTAC+AGG 0.526666 7_3:-9186524 Msa1092430:intron
CAAAATGGAAATGGTCACTA+AGG 0.530817 7_3:+9183479 None:intergenic
TCAGAGAAGCTGAATATGGT+TGG 0.537130 7_3:-9183719 Msa1092430:three_prime_UTR
TAATGATGAAGAAGATGACT+TGG 0.540318 7_3:+9189980 None:intergenic
CTTTACGTCAGCATTAATGC+CGG 0.542608 7_3:+9187294 None:intergenic
CCATCGCCACAAATTGTGAA+AGG 0.545208 7_3:+9190014 None:intergenic
AGCGGACTTGGTGCGGCTGG+AGG 0.547910 7_3:+9189889 None:intergenic
ATGAAGTATGAGGAAATGAC+TGG 0.549132 7_3:-9183975 Msa1092430:CDS
CCGGTAGGCGAACGTGGTGA+AGG 0.552415 7_3:-9187400 Msa1092430:CDS
TTTATTCAGGTTGCTCTGAA+GGG 0.552892 7_3:-9183512 Msa1092430:three_prime_UTR
GAGGGTTGTCTATCTTTCCC+CGG 0.565473 7_3:-9187313 Msa1092430:CDS
CATCGCCACAAATTGTGAAA+GGG 0.570066 7_3:+9190015 None:intergenic
TTCAATCCGGTAGGCGAACG+TGG 0.572000 7_3:-9187406 Msa1092430:CDS
GTGGAAGAAGCGGTTTGGAA+TGG 0.573783 7_3:+9189925 None:intergenic
AGAGAGTCAGGTGGAAGAAG+CGG 0.574880 7_3:+9189915 None:intergenic
ATATTAGGCTCATCACTTAG+CGG 0.587915 7_3:-9183781 Msa1092430:three_prime_UTR
GATTGATGCACGTGATGTCA+AGG 0.593167 7_3:-9186596 Msa1092430:CDS
GGTCTTTCAGCACCCCAAGT+AGG 0.597078 7_3:-9187451 Msa1092430:CDS
CATGATTTCCCAAAACCAGA+AGG 0.597253 7_3:+9183906 None:intergenic
ATTCAGGTTGCTCTGAAGGG+TGG 0.600084 7_3:-9183509 Msa1092430:three_prime_UTR
CACGTGATGTCAAGGGAACA+CGG 0.600242 7_3:-9186588 Msa1092430:CDS
GTTTGTCTGGCCTTCCAGCA+CGG 0.600965 7_3:-9186555 Msa1092430:CDS
CTAGTAGTGGATAGTCATCA+AGG 0.604478 7_3:-9183560 Msa1092430:three_prime_UTR
GTTGAAATATCCGTGCTGGA+AGG 0.611276 7_3:+9186545 None:intergenic
GTGCAGAACAGCGGTAGTGG+TGG 0.613606 7_3:+9189954 None:intergenic
TGAACATTAATTCCTACTTG+GGG 0.618628 7_3:+9187439 None:intergenic
AATGATGAAGAAGATGACTT+GGG 0.622365 7_3:+9189981 None:intergenic
AACCGAACACTCTTCAATGA+GGG 0.628227 7_3:-9187331 Msa1092430:CDS
AAATCATCTCCAAATCACAC+TGG 0.629947 7_3:+9183415 None:intergenic
ATTGATGCACGTGATGTCAA+GGG 0.634587 7_3:-9186595 Msa1092430:CDS
GATGAAGAAGATGACTTGGG+AGG 0.636397 7_3:+9189984 None:intergenic
GAACCGAACACTCTTCAATG+AGG 0.639867 7_3:-9187332 Msa1092430:CDS
TTACGTCAGCATTAATGCCG+GGG 0.640683 7_3:+9187296 None:intergenic
ATATATAGAAGAAAAGTGAA+AGG 0.642680 7_3:-9183683 Msa1092430:three_prime_UTR
ATGATTTCCCAAAACCAGAA+GGG 0.648338 7_3:+9183907 None:intergenic
TGGAGGAGGAGAGAGTCAGG+TGG 0.687629 7_3:+9189906 None:intergenic
TGGCAGCAAGTGCAGAACAG+CGG 0.718401 7_3:+9189945 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTACAAAATAAATCAAAA+AGG + chr7_3:9186506-9186525 None:intergenic 10.0%
!! TACATAAACAAAAAAAATTT+CGG + chr7_3:9186589-9186608 None:intergenic 10.0%
!!! TTCTAATTTTGTATTAATTA+GGG + chr7_3:9187909-9187928 None:intergenic 10.0%
!!! ACATTTTTTTTTTCTTTTTT+TGG - chr7_3:9188828-9188847 Msa1092430:intron 10.0%
!!! AATTGTAAAAATCTTATTTT+TGG + chr7_3:9189149-9189168 None:intergenic 10.0%
!!! TTTTTTTTATTAAGGCTAAA+GGG + chr7_3:9184445-9184464 None:intergenic 15.0%
!!! ATTTTTTTTATTAAGGCTAA+AGG + chr7_3:9184446-9184465 None:intergenic 15.0%
!! GTCAAAATAAATTGTTAATA+AGG + chr7_3:9184867-9184886 None:intergenic 15.0%
!!! TACTTTTACTATTAGAATAA+GGG + chr7_3:9185019-9185038 None:intergenic 15.0%
!! AAATTGCAAATATAATAGAT+GGG + chr7_3:9186205-9186224 None:intergenic 15.0%
!! AAAATTGCAAATATAATAGA+TGG + chr7_3:9186206-9186225 None:intergenic 15.0%
!! AAATATTTAATGAACCTAAA+AGG + chr7_3:9186397-9186416 None:intergenic 15.0%
!! TTGAGTTATTTATAAACTTA+TGG - chr7_3:9187577-9187596 Msa1092430:intron 15.0%
!!! GTTCTAATTTTGTATTAATT+AGG + chr7_3:9187910-9187929 None:intergenic 15.0%
!! TATATAATTGTTATATCTAC+AGG - chr7_3:9188042-9188061 Msa1092430:intron 15.0%
!! ATATAATTGTTATATCTACA+GGG - chr7_3:9188043-9188062 Msa1092430:intron 15.0%
!! AACATAAATCATAAATCAAA+AGG - chr7_3:9188723-9188742 Msa1092430:intron 15.0%
!! ACATAAATCATAAATCAAAA+GGG - chr7_3:9188724-9188743 Msa1092430:intron 15.0%
!!! TATTTTTGGTATGAATTTTA+TGG + chr7_3:9189135-9189154 None:intergenic 15.0%
!!! AATTTTTAACTTATCTATGA+GGG + chr7_3:9189294-9189313 None:intergenic 15.0%
!!! TAATTTTTAACTTATCTATG+AGG + chr7_3:9189295-9189314 None:intergenic 15.0%
!! GATAAGTTAAAAATTATTAC+AGG - chr7_3:9189299-9189318 Msa1092430:intron 15.0%
!!! TTTGTTTTTTTGAATGAAGT+TGG - chr7_3:9183606-9183625 Msa1092430:three_prime_UTR 20.0%
!!! TTATTCTTTTTCCTTAACTT+GGG + chr7_3:9183678-9183697 None:intergenic 20.0%
!!! TTTATTCTTTTTCCTTAACT+TGG + chr7_3:9183679-9183698 None:intergenic 20.0%
!! TTTCTTAAGATTATCATCAA+AGG + chr7_3:9183712-9183731 None:intergenic 20.0%
!! AACATCTTATAGTTATACAT+AGG + chr7_3:9183800-9183819 None:intergenic 20.0%
!! TTATAACTTCATTTCATCTT+TGG + chr7_3:9183829-9183848 None:intergenic 20.0%
!!! AATAAGTTGAAAATAGCTTA+TGG - chr7_3:9183871-9183890 Msa1092430:intron 20.0%
!!! TTTTTTTATTAAGGCTAAAG+GGG + chr7_3:9184444-9184463 None:intergenic 20.0%
!! TATGATTTAAGCATTCAATT+AGG - chr7_3:9184806-9184825 Msa1092430:intron 20.0%
!!! ATTTTTTAAAGTTGTTGAGA+TGG - chr7_3:9184905-9184924 Msa1092430:intron 20.0%
!!! TTTTTTAAAGTTGTTGAGAT+GGG - chr7_3:9184906-9184925 Msa1092430:intron 20.0%
!!! GAGCTAATTTTAAAATCATA+GGG + chr7_3:9184970-9184989 None:intergenic 20.0%
!!! TGAGCTAATTTTAAAATCAT+AGG + chr7_3:9184971-9184990 None:intergenic 20.0%
!!! GTACTTTTACTATTAGAATA+AGG + chr7_3:9185020-9185039 None:intergenic 20.0%
!!! ATGTTTTTATAAAACAAGAG+TGG - chr7_3:9185053-9185072 Msa1092430:intron 20.0%
!!! TAATTTCTTGTTATAGTTCT+TGG - chr7_3:9185228-9185247 Msa1092430:intron 20.0%
!!! TCAACTTTTTTCTGTTATAT+TGG + chr7_3:9185436-9185455 None:intergenic 20.0%
!! ATTAAGAAGAGAAAAAGATA+AGG + chr7_3:9185564-9185583 None:intergenic 20.0%
!! AAAACAATAGAGAAACAAAA+AGG - chr7_3:9185589-9185608 Msa1092430:intron 20.0%
!! AAATGTTGTAAAACAATACA+AGG + chr7_3:9185787-9185806 None:intergenic 20.0%
!!! TTGTATTGTTTTACAACATT+TGG - chr7_3:9185786-9185805 Msa1092430:intron 20.0%
!!! ATTTTGAATCTAGCTTTTTT+TGG - chr7_3:9186132-9186151 Msa1092430:intron 20.0%
!!! TTTTGAATCTAGCTTTTTTT+GGG - chr7_3:9186133-9186152 Msa1092430:intron 20.0%
!! TTCATACTAAGTTCAAAAAT+TGG + chr7_3:9186176-9186195 None:intergenic 20.0%
!!! ATTTTTGAACTTAGTATGAA+TGG - chr7_3:9186176-9186195 Msa1092430:intron 20.0%
!!! CGTGTTTTATTTTCTTTTAT+TGG - chr7_3:9186612-9186631 Msa1092430:CDS 20.0%
!! ATTCAAACCTATAAATAGAA+AGG - chr7_3:9187042-9187061 Msa1092430:intron 20.0%
!!! AAAGAAAGTGTTTAAAAACA+CGG + chr7_3:9187252-9187271 None:intergenic 20.0%
!!! TTTATAAACTTATGGATTGA+TGG - chr7_3:9187585-9187604 Msa1092430:intron 20.0%
!!! AGTTTAATGTTTTGATTTAG+AGG - chr7_3:9187629-9187648 Msa1092430:intron 20.0%
!! ATCTATATGTGATCTTAATA+TGG + chr7_3:9187932-9187951 None:intergenic 20.0%
!! AACAGTCTTAATTATATGAA+AGG + chr7_3:9187972-9187991 None:intergenic 20.0%
!!! GTTTTTTCAAGAGTTATTTA+TGG + chr7_3:9188265-9188284 None:intergenic 20.0%
!! GCATAAATATTTAGCAATTA+TGG - chr7_3:9188561-9188580 Msa1092430:intron 20.0%
!! ATTAATTGGTAAGATTAAAC+AGG + chr7_3:9188596-9188615 None:intergenic 20.0%
!! TTGTAAAATCATCTACTTAA+AGG - chr7_3:9188647-9188666 Msa1092430:intron 20.0%
!! AACTTCATTAAAGAAGAAAA+AGG - chr7_3:9188887-9188906 Msa1092430:intron 20.0%
!!! TTAGGTTTGTTAATTATTGA+GGG + chr7_3:9188968-9188987 None:intergenic 20.0%
!!! TTTAGGTTTGTTAATTATTG+AGG + chr7_3:9188969-9188988 None:intergenic 20.0%
!! TAATTAACAAACCTAAAACT+TGG - chr7_3:9188972-9188991 Msa1092430:intron 20.0%
!!! AATTAAACCATCTATTTCTA+AGG - chr7_3:9189165-9189184 Msa1092430:intron 20.0%
!! ACCAAAACTTATCTATAATT+GGG + chr7_3:9189352-9189371 None:intergenic 20.0%
!! AACCAAAACTTATCTATAAT+TGG + chr7_3:9189353-9189372 None:intergenic 20.0%
!!! AGTTTTGGTTAAATTATTAC+AGG - chr7_3:9189363-9189382 Msa1092430:intron 20.0%
!!! TTATTTTACAGGTCAATATT+AGG - chr7_3:9189573-9189592 Msa1092430:intron 20.0%
!! ATATATAGAAGAAAAGTGAA+AGG - chr7_3:9189686-9189705 Msa1092430:intron 20.0%
! AAGTCATAGATAGATACTTA+TGG + chr7_3:9183555-9183574 None:intergenic 25.0%
!!! TATTCTTTTTCCTTAACTTG+GGG + chr7_3:9183677-9183696 None:intergenic 25.0%
! ATAGCTTATGGATATTTCAT+AGG - chr7_3:9183883-9183902 Msa1092430:intron 25.0%
! AAGATAGTTGTAAGACTATT+TGG + chr7_3:9183927-9183946 None:intergenic 25.0%
! AGTCTTACAACTATCTTATA+AGG - chr7_3:9183930-9183949 Msa1092430:CDS 25.0%
! GTCTTACAACTATCTTATAA+GGG - chr7_3:9183931-9183950 Msa1092430:CDS 25.0%
! TTGACTAGGAAATATTTGTT+TGG - chr7_3:9184007-9184026 Msa1092430:intron 25.0%
! TGACTAGGAAATATTTGTTT+GGG - chr7_3:9184008-9184027 Msa1092430:intron 25.0%
! TTTGTAATTTATCTGCATTC+AGG - chr7_3:9184243-9184262 Msa1092430:intron 25.0%
! TTGTAATTTATCTGCATTCA+GGG - chr7_3:9184244-9184263 Msa1092430:intron 25.0%
! TGACAATTACCAAACAAATA+GGG + chr7_3:9184318-9184337 None:intergenic 25.0%
! TGTTATAGTTCTTGGATATT+AGG - chr7_3:9185236-9185255 Msa1092430:intron 25.0%
! GTTATAGTTCTTGGATATTA+GGG - chr7_3:9185237-9185256 Msa1092430:intron 25.0%
!!! CTATTTCTACCAACAAAATA+GGG + chr7_3:9185271-9185290 None:intergenic 25.0%
!!! ATATCAGTGTTCTGAAAAAA+TGG + chr7_3:9185507-9185526 None:intergenic 25.0%
!!! TATTTTTAATCATGTAAGCC+AGG - chr7_3:9185699-9185718 Msa1092430:intron 25.0%
!! ATTTTTAATCATGTAAGCCA+GGG - chr7_3:9185700-9185719 Msa1092430:intron 25.0%
! CATGATTCAAATAACATTGA+GGG - chr7_3:9185741-9185760 Msa1092430:intron 25.0%
! TTTGAATGTTACATTAACAG+TGG - chr7_3:9185865-9185884 Msa1092430:intron 25.0%
! TTGAACATTAATTCCTACTT+GGG + chr7_3:9185934-9185953 None:intergenic 25.0%
! AGGAATTAATGTTCAACTTA+TGG - chr7_3:9185938-9185957 Msa1092430:intron 25.0%
! TTGAGTATTTACTAACTCTT+GGG + chr7_3:9186016-9186035 None:intergenic 25.0%
! ATTGAGTATTTACTAACTCT+TGG + chr7_3:9186017-9186036 None:intergenic 25.0%
! AGAAGAGGATAACAAAATAA+GGG + chr7_3:9186253-9186272 None:intergenic 25.0%
! ATTTAATGAACCTAAAAGGA+TGG + chr7_3:9186393-9186412 None:intergenic 25.0%
! AAGGAACTCAAATAAATTAC+AGG + chr7_3:9186420-9186439 None:intergenic 25.0%
! ACTTAACAATTCTTTCAGAA+AGG + chr7_3:9186439-9186458 None:intergenic 25.0%
!! TTTCTGAAAGAATTGTTAAG+TGG - chr7_3:9186438-9186457 Msa1092430:intron 25.0%
!! CAAGCAATTTTTCTTTAGTT+GGG + chr7_3:9186652-9186671 None:intergenic 25.0%
!! ACAAGCAATTTTTCTTTAGT+TGG + chr7_3:9186653-9186672 None:intergenic 25.0%
!! TAATAAGACTTGTTTGAGTA+GGG + chr7_3:9186725-9186744 None:intergenic 25.0%
!! ATAATAAGACTTGTTTGAGT+AGG + chr7_3:9186726-9186745 None:intergenic 25.0%
!!! TCAAACAAGTCTTATTATTG+CGG - chr7_3:9186728-9186747 Msa1092430:intron 25.0%
!!! ATGGTATTTTTATGAACCTT+TGG - chr7_3:9186949-9186968 Msa1092430:intron 25.0%
! CATATAACAAGTGTTATGAT+AGG - chr7_3:9186983-9187002 Msa1092430:intron 25.0%
! CTATAAATAGAAAGGATCTA+GGG - chr7_3:9187050-9187069 Msa1092430:intron 25.0%
! TATAAATAGAAAGGATCTAG+GGG - chr7_3:9187051-9187070 Msa1092430:intron 25.0%
!!! TAAGTTATTTTTACACGACA+CGG + chr7_3:9187556-9187575 None:intergenic 25.0%
! TATATATAACCAACAAGTAG+TGG + chr7_3:9187999-9188018 None:intergenic 25.0%
! AATATAAGAGACCTATTTAG+AGG - chr7_3:9188367-9188386 Msa1092430:intron 25.0%
! TCAATCGTCAACAATTATAT+TGG + chr7_3:9188478-9188497 None:intergenic 25.0%
! TAATTTATTAACAGACCTGT+CGG + chr7_3:9188619-9188638 None:intergenic 25.0%
! ACAGGTCTGTTAATAAATTA+TGG - chr7_3:9188619-9188638 Msa1092430:intron 25.0%
!!! TCTTTTTTTGGCAAAAAAAG+AGG - chr7_3:9188840-9188859 Msa1092430:intron 25.0%
! TCTTCTTTAATGAAGTTTAG+AGG + chr7_3:9188884-9188903 None:intergenic 25.0%
! AGAAAAAGGAAACAAGAAAA+AGG - chr7_3:9188901-9188920 Msa1092430:intron 25.0%
!! TTGTTAATTATTGAGGGTTT+TGG + chr7_3:9188962-9188981 None:intergenic 25.0%
!!! TTTACATGGTTTGTTTGTTT+GGG + chr7_3:9189051-9189070 None:intergenic 25.0%
!! AAAGAAATTGGACCAATTTT+TGG + chr7_3:9189253-9189272 None:intergenic 25.0%
! AGATAGCTAATGAAAGAAAT+TGG + chr7_3:9189265-9189284 None:intergenic 25.0%
! ACTTATCTATAATTGGGTTT+CGG + chr7_3:9189346-9189365 None:intergenic 25.0%
!! ACCCAATTATAGATAAGTTT+TGG - chr7_3:9189348-9189367 Msa1092430:intron 25.0%
! TATAAGTTTGTAACTAGTAG+TGG - chr7_3:9189796-9189815 Msa1092430:intron 25.0%
!! AGAGCATTCATTATTTATTC+AGG - chr7_3:9189844-9189863 Msa1092430:intron 25.0%
! TAACAAACTCAAAATGGAAA+TGG + chr7_3:9189902-9189921 None:intergenic 25.0%
! CATCATTAACAAACTCAAAA+TGG + chr7_3:9189908-9189927 None:intergenic 25.0%
AATGATGAAGAAGATGACTT+GGG + chr7_3:9183391-9183410 None:intergenic 30.0%
TAATGATGAAGAAGATGACT+TGG + chr7_3:9183392-9183411 None:intergenic 30.0%
! GGATATTTCACTATTTTCAG+CGG + chr7_3:9183651-9183670 None:intergenic 30.0%
AGGAAAAAGAATAAACGCAT+TGG - chr7_3:9183684-9183703 Msa1092430:three_prime_UTR 30.0%
TTCCAGAAAAAAAAAGCTTG+TGG + chr7_3:9183853-9183872 None:intergenic 30.0%
CATAAGCTATAAGCTCAAAA+AGG + chr7_3:9183973-9183992 None:intergenic 30.0%
TCTAATAAGCTCATTTGACT+AGG - chr7_3:9183993-9184012 Msa1092430:intron 30.0%
GACTAGGAAATATTTGTTTG+GGG - chr7_3:9184009-9184028 Msa1092430:intron 30.0%
GTGACAATTACCAAACAAAT+AGG + chr7_3:9184319-9184338 None:intergenic 30.0%
CTGATCGAATTTGTAATGTT+TGG + chr7_3:9184522-9184541 None:intergenic 30.0%
AATAGCATATGAGCTTATAG+AGG + chr7_3:9184561-9184580 None:intergenic 30.0%
TCTACAGAACATAAGTACTT+AGG + chr7_3:9184625-9184644 None:intergenic 30.0%
AACAAACAAAGACAGACTAA+GGG + chr7_3:9184676-9184695 None:intergenic 30.0%
AAACAAACAAAGACAGACTA+AGG + chr7_3:9184677-9184696 None:intergenic 30.0%
! TCTGTCTTTGTTTGTTTCAA+CGG - chr7_3:9184680-9184699 Msa1092430:intron 30.0%
! TTTATGATAGTGAAAGACAG+AGG + chr7_3:9184775-9184794 None:intergenic 30.0%
! TATTAGAATAAGGGTGTACT+CGG + chr7_3:9185010-9185029 None:intergenic 30.0%
!! GCTATTTCTACCAACAAAAT+AGG + chr7_3:9185272-9185291 None:intergenic 30.0%
!! TTTTGTTGGTAGAAATAGCT+AGG - chr7_3:9185273-9185292 Msa1092430:CDS 30.0%
! TTTGTTGGTAGAAATAGCTA+GGG - chr7_3:9185274-9185293 Msa1092430:CDS 30.0%
! AACCATTTTGTGACAACTTT+TGG - chr7_3:9185533-9185552 Msa1092430:intron 30.0%
! ACCATTTTGTGACAACTTTT+GGG - chr7_3:9185534-9185553 Msa1092430:intron 30.0%
GTTCAAAAGTTGTCACAAAA+TGG - chr7_3:9185656-9185675 Msa1092430:intron 30.0%
GCATGATTCAAATAACATTG+AGG - chr7_3:9185740-9185759 Msa1092430:intron 30.0%
GTAACATTCAAAAAAACGCA+GGG + chr7_3:9185857-9185876 None:intergenic 30.0%
TGTAACATTCAAAAAAACGC+AGG + chr7_3:9185858-9185877 None:intergenic 30.0%
TGAACATTAATTCCTACTTG+GGG + chr7_3:9185933-9185952 None:intergenic 30.0%
GTTGAACATTAATTCCTACT+TGG + chr7_3:9185935-9185954 None:intergenic 30.0%
! TCAACTTATGGTTTTCAATC+CGG - chr7_3:9185950-9185969 Msa1092430:intron 30.0%
!!! GCTTTTTTTGGGCTAATTTA+TGG - chr7_3:9186144-9186163 Msa1092430:intron 30.0%
! CGTTTGAAGTTTGAAAATCT+TGG - chr7_3:9186226-9186245 Msa1092430:intron 30.0%
CAGAAGAGGATAACAAAATA+AGG + chr7_3:9186254-9186273 None:intergenic 30.0%
!!! CATTTTTCTGGTTTCATTCT+TGG + chr7_3:9186332-9186351 None:intergenic 30.0%
CAAGAATGAAACCAGAAAAA+TGG - chr7_3:9186330-9186349 Msa1092430:intron 30.0%
GGATGGTTATGCTATATATT+TGG + chr7_3:9186376-9186395 None:intergenic 30.0%
! TATAGCATAACCATCCTTTT+AGG - chr7_3:9186380-9186399 Msa1092430:intron 30.0%
AGATAGCAAACAGAACAAAA+TGG + chr7_3:9186563-9186582 None:intergenic 30.0%
! TCTAAAGTTCATGACTATAC+TGG - chr7_3:9186673-9186692 Msa1092430:intron 30.0%
TCAAAAAACTTACCTGTAGA+TGG + chr7_3:9186860-9186879 None:intergenic 30.0%
CCTAGATCCTTTCTATTTAT+AGG + chr7_3:9187052-9187071 None:intergenic 30.0%
CCTATAAATAGAAAGGATCT+AGG - chr7_3:9187049-9187068 Msa1092430:intron 30.0%
TTCTATAAAACCAGAAACTG+AGG + chr7_3:9187494-9187513 None:intergenic 30.0%
!! AGAAGTACAATTTTTCCCTT+TGG - chr7_3:9187686-9187705 Msa1092430:intron 30.0%
GCTAGTGAATAGTATTAACA+GGG - chr7_3:9187876-9187895 Msa1092430:intron 30.0%
TGATGTATTTCTCATGTCAA+GGG + chr7_3:9188160-9188179 None:intergenic 30.0%
ATGATGTATTTCTCATGTCA+AGG + chr7_3:9188161-9188180 None:intergenic 30.0%
AACTCTTGAAAAAACATGTC+TGG - chr7_3:9188270-9188289 Msa1092430:intron 30.0%
ACTCTTGAAAAAACATGTCT+GGG - chr7_3:9188271-9188290 Msa1092430:intron 30.0%
AACATCTTTCACCTCTAAAT+AGG + chr7_3:9188381-9188400 None:intergenic 30.0%
AAAATAATTGCCACAAAGCA+AGG - chr7_3:9188425-9188444 Msa1092430:intron 30.0%
ATATTTGTTTCCTTGCTTTG+TGG + chr7_3:9188438-9188457 None:intergenic 30.0%
TCGTCAACAATTATATTGGT+CGG + chr7_3:9188474-9188493 None:intergenic 30.0%
ACAATCTTTCTTCTGACTAA+TGG - chr7_3:9188497-9188516 Msa1092430:intron 30.0%
! TCTTTGTTTGAATCCCTATA+AGG + chr7_3:9188682-9188701 None:intergenic 30.0%
ACAACAAAAGAAACAAGATG+AGG - chr7_3:9188926-9188945 Msa1092430:intron 30.0%
CAACAAAAGAAACAAGATGA+GGG - chr7_3:9188927-9188946 Msa1092430:intron 30.0%
AACAAAAGAAACAAGATGAG+GGG - chr7_3:9188928-9188947 Msa1092430:intron 30.0%
!! TATTTCTAGTCAGGTTGTTA+AGG + chr7_3:9189012-9189031 None:intergenic 30.0%
ACAACCTGACTAGAAATAAA+AGG - chr7_3:9189014-9189033 Msa1092430:intron 30.0%
!! CTTTACATGGTTTGTTTGTT+TGG + chr7_3:9189052-9189071 None:intergenic 30.0%
AACATAGGTTTGTCTTTACA+TGG + chr7_3:9189065-9189084 None:intergenic 30.0%
TTTCTCATGTGTATAGAGAA+GGG + chr7_3:9189112-9189131 None:intergenic 30.0%
!!! AAATTGGACCAATTTTTGGT+TGG + chr7_3:9189249-9189268 None:intergenic 30.0%
TTCCTCATACTTCATTTCAA+GGG + chr7_3:9189389-9189408 None:intergenic 30.0%
TTTCCTCATACTTCATTTCA+AGG + chr7_3:9189390-9189409 None:intergenic 30.0%
!! TTTCTATCTTTTCAGGACTT+GGG + chr7_3:9189423-9189442 None:intergenic 30.0%
CATTACCCTTTCACAATTTG+TGG - chr7_3:9183349-9183368 Msa1092430:three_prime_UTR 35.0%
! GTTTTGTGAAGCTGAAAAAG+CGG + chr7_3:9183501-9183520 None:intergenic 35.0%
ATAGATACTTATGGTGAGAG+TGG + chr7_3:9183546-9183565 None:intergenic 35.0%
!!! AGCCACAAGCTTTTTTTTTC+TGG - chr7_3:9183848-9183867 Msa1092430:intron 35.0%
CTATCTTATAAGGGTCTGTT+TGG - chr7_3:9183940-9183959 Msa1092430:CDS 35.0%
TTGCAATTTCTCTGCATTCA+GGG + chr7_3:9184082-9184101 None:intergenic 35.0%
TTTGCAATTTCTCTGCATTC+AGG + chr7_3:9184083-9184102 None:intergenic 35.0%
TCAGGGACTAAATTGACTAA+CGG - chr7_3:9184168-9184187 Msa1092430:intron 35.0%
GACTAATCTCCCTATTTGTT+TGG - chr7_3:9184306-9184325 Msa1092430:intron 35.0%
AAGGCTAAAGGGGTAAAATT+TGG + chr7_3:9184434-9184453 None:intergenic 35.0%
CTGCACGATAAGAAATTTGA+AGG - chr7_3:9184734-9184753 Msa1092430:intron 35.0%
AGTTCTTGGATATTAGGGAA+TGG - chr7_3:9185242-9185261 Msa1092430:intron 35.0%
! TTGTTGGTAGAAATAGCTAG+GGG - chr7_3:9185275-9185294 Msa1092430:CDS 35.0%
TGTAAGACCAGTAAATCACA+AGG + chr7_3:9185386-9185405 None:intergenic 35.0%
TCCCAAAAGTTGTCACAAAA+TGG + chr7_3:9185538-9185557 None:intergenic 35.0%
AGAGAATAAGAACACAACGT+GGG - chr7_3:9185617-9185636 Msa1092430:intron 35.0%
TATTGATATTTCCATCACCC+TGG + chr7_3:9185720-9185739 None:intergenic 35.0%
! TCCTTTTTGTACAGAACTGA+TGG - chr7_3:9185891-9185910 Msa1092430:intron 35.0%
ACCATCAGTTCTGTACAAAA+AGG + chr7_3:9185895-9185914 None:intergenic 35.0%
TTGTACAGAACTGATGGTAT+TGG - chr7_3:9185897-9185916 Msa1092430:intron 35.0%
TTGCTAGAAAGAAAAAACCG+TGG + chr7_3:9186299-9186318 None:intergenic 35.0%
GAAACCAGAAAAATGGAACT+TGG - chr7_3:9186337-9186356 Msa1092430:intron 35.0%
!! GCTATATATTTGGTTCTTGC+TGG + chr7_3:9186366-9186385 None:intergenic 35.0%
GTTCATGACTATACTGGATA+TGG - chr7_3:9186679-9186698 Msa1092430:intron 35.0%
ACATGAATTTGACCATCTAC+AGG - chr7_3:9186845-9186864 Msa1092430:intron 35.0%
TTAATTCCCCTTTCACCATT+GGG + chr7_3:9187011-9187030 None:intergenic 35.0%
ATTAATTCCCCTTTCACCAT+TGG + chr7_3:9187012-9187031 None:intergenic 35.0%
TGATACTCAGTAAACTTGTC+AGG - chr7_3:9187088-9187107 Msa1092430:intron 35.0%
! TGAAGTGGGTCATATTTTGT+GGG - chr7_3:9187218-9187237 Msa1092430:intron 35.0%
AGAGAGTGAGAGAAAACTTA+GGG + chr7_3:9187315-9187334 None:intergenic 35.0%
ACATGAAGAAAAAAAAGGGC+AGG + chr7_3:9187460-9187479 None:intergenic 35.0%
!!! TGCCCTTTTTTTTCTTCATG+TGG - chr7_3:9187459-9187478 Msa1092430:CDS 35.0%
GGCCACATGAAGAAAAAAAA+GGG + chr7_3:9187464-9187483 None:intergenic 35.0%
! GTACAATTTTTCCCTTTGGT+AGG - chr7_3:9187690-9187709 Msa1092430:intron 35.0%
TCAAACTCGAGATTCTACTA+TGG + chr7_3:9187771-9187790 None:intergenic 35.0%
! TAATACTATTCACTAGCCTC+TGG + chr7_3:9187873-9187892 None:intergenic 35.0%
GGCTAGTGAATAGTATTAAC+AGG - chr7_3:9187875-9187894 Msa1092430:intron 35.0%
! TGAAAGGTGTAGATGTTTGT+GGG + chr7_3:9187956-9187975 None:intergenic 35.0%
! ATGAAAGGTGTAGATGTTTG+TGG + chr7_3:9187957-9187976 None:intergenic 35.0%
CAGTCATTCTCTCAAAGAAA+AGG + chr7_3:9188072-9188091 None:intergenic 35.0%
! GAAGTTCTTGATAGTATTCG+TGG - chr7_3:9188094-9188113 Msa1092430:intron 35.0%
ATGCGTATTAAAAGCTTAGC+TGG - chr7_3:9188192-9188211 Msa1092430:intron 35.0%
CTCGTGATACAATGAATCTA+AGG + chr7_3:9188219-9188238 None:intergenic 35.0%
CAAGAGTTATTTATGGATGC+AGG + chr7_3:9188258-9188277 None:intergenic 35.0%
GAGTGCTTAATCAAGATTTG+AGG + chr7_3:9188319-9188338 None:intergenic 35.0%
AATCTTGATTAAGCACTCGA+TGG - chr7_3:9188321-9188340 Msa1092430:intron 35.0%
! ATGGTGTCAAGTTCTTGATT+GGG - chr7_3:9188340-9188359 Msa1092430:intron 35.0%
TGTCTAAGTCTATGATGTGA+AGG - chr7_3:9188400-9188419 Msa1092430:intron 35.0%
ATTATCTTGCATGAGAGTGA+GGG + chr7_3:9188526-9188545 None:intergenic 35.0%
TATTATCTTGCATGAGAGTG+AGG + chr7_3:9188527-9188546 None:intergenic 35.0%
ATCTTACCAATTAATCCGAC+AGG - chr7_3:9188601-9188620 Msa1092430:intron 35.0%
! AAAGGCTAGTTATGCCTTAT+AGG - chr7_3:9188665-9188684 Msa1092430:intron 35.0%
! AAGGCTAGTTATGCCTTATA+GGG - chr7_3:9188666-9188685 Msa1092430:intron 35.0%
ACAAAAGAAACAAGATGAGG+GGG - chr7_3:9188929-9188948 Msa1092430:intron 35.0%
ACCTGACTAGAAATAAAAGG+AGG - chr7_3:9189017-9189036 Msa1092430:intron 35.0%
!!! TCCTCCTTTTATTTCTAGTC+AGG + chr7_3:9189021-9189040 None:intergenic 35.0%
AAGACAAACCTATGTTTGCA+AGG - chr7_3:9189069-9189088 Msa1092430:intron 35.0%
AGACAAACCTATGTTTGCAA+GGG - chr7_3:9189070-9189089 Msa1092430:intron 35.0%
GTTTCTCATGTGTATAGAGA+AGG + chr7_3:9189113-9189132 None:intergenic 35.0%
CTTGGAACCTTAGAAATAGA+TGG + chr7_3:9189175-9189194 None:intergenic 35.0%
!! CATCTATTTCTAAGGTTCCA+AGG - chr7_3:9189173-9189192 Msa1092430:intron 35.0%
ATCAGTCTCCAACCAAAAAT+TGG - chr7_3:9189238-9189257 Msa1092430:intron 35.0%
ATTATTACAGGCCCTTGAAA+TGG - chr7_3:9189311-9189330 Msa1092430:intron 35.0%
ATGAAGTATGAGGAAATGAC+TGG - chr7_3:9189394-9189413 Msa1092430:intron 35.0%
!! CTTTCTATCTTTTCAGGACT+TGG + chr7_3:9189424-9189443 None:intergenic 35.0%
ATGATTTCCCAAAACCAGAA+GGG + chr7_3:9189465-9189484 None:intergenic 35.0%
TTGGGAAATCATGATCTTCA+AGG - chr7_3:9189473-9189492 Msa1092430:intron 35.0%
ATCAATGCAAAAGACAAACG+TGG + chr7_3:9189516-9189535 None:intergenic 35.0%
ATATTAGGCTCATCACTTAG+CGG - chr7_3:9189588-9189607 Msa1092430:intron 35.0%
ATTGTCAGAGAAGCTGAATA+TGG - chr7_3:9189646-9189665 Msa1092430:intron 35.0%
!! ATTTATTCAGGTTGCTCTGA+AGG - chr7_3:9189856-9189875 Msa1092430:intron 35.0%
!! TTTATTCAGGTTGCTCTGAA+GGG - chr7_3:9189857-9189876 Msa1092430:intron 35.0%
CAAAATGGAAATGGTCACTA+AGG + chr7_3:9189893-9189912 None:intergenic 35.0%
! CATTTTTCTCCAGTGTGATT+TGG - chr7_3:9189945-9189964 Msa1092430:CDS 35.0%
AAATCATCTCCAAATCACAC+TGG + chr7_3:9189957-9189976 None:intergenic 35.0%
CATCGCCACAAATTGTGAAA+GGG + chr7_3:9183357-9183376 None:intergenic 40.0%
AATATCCAGACCCCAAGTTA+AGG - chr7_3:9183664-9183683 Msa1092430:three_prime_UTR 40.0%
!! TTTTTCCTTAACTTGGGGTC+TGG + chr7_3:9183672-9183691 None:intergenic 40.0%
ACCAACAGAGTCTACATTCA+GGG + chr7_3:9184111-9184130 None:intergenic 40.0%
AGACTCTGTTGGTCAATTTC+AGG - chr7_3:9184118-9184137 Msa1092430:intron 40.0%
GACTCTGTTGGTCAATTTCA+GGG - chr7_3:9184119-9184138 Msa1092430:intron 40.0%
TCAGGGACTAAAGTGACTAA+CGG - chr7_3:9184136-9184155 Msa1092430:intron 40.0%
ACTAACGGAGTCTACATTCA+GGG - chr7_3:9184151-9184170 Msa1092430:intron 40.0%
ACTAACGGAGTATGCATTCA+GGG - chr7_3:9184183-9184202 Msa1092430:intron 40.0%
! TGACGACTCTTTTCCTATTC+AGG - chr7_3:9184274-9184293 Msa1092430:intron 40.0%
! GACGACTCTTTTCCTATTCA+GGG - chr7_3:9184275-9184294 Msa1092430:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+AGG + chr7_3:9184067-9184086 None:intergenic 40.0%
ATACACACTCATTCTGCGTT+TGG - chr7_3:9184837-9184856 Msa1092430:intron 40.0%
AATCAACAAACCAATCCCAG+AGG - chr7_3:9185116-9185135 Msa1092430:intron 40.0%
!!! CAGCTCATGCTATTTTGTCA+GGG + chr7_3:9185192-9185211 None:intergenic 40.0%
!!! TCAGCTCATGCTATTTTGTC+AGG + chr7_3:9185193-9185212 None:intergenic 40.0%
! GAATGGCTACCCTATTTTGT+TGG - chr7_3:9185259-9185278 Msa1092430:intron 40.0%
! TGTTGGTAGAAATAGCTAGG+GGG - chr7_3:9185276-9185295 Msa1092430:CDS 40.0%
GGGGATAGAAATCATAGTCT+GGG - chr7_3:9185295-9185314 Msa1092430:CDS 40.0%
TTCTGCAATTGAGTGAGTGT+AGG + chr7_3:9185334-9185353 None:intergenic 40.0%
TTCTTGCACCCAAAGTTTGT+CGG - chr7_3:9185356-9185375 Msa1092430:intron 40.0%
AAGGTGAACCGACAAACTTT+GGG + chr7_3:9185367-9185386 None:intergenic 40.0%
GAGAGAATAAGAACACAACG+TGG - chr7_3:9185616-9185635 Msa1092430:intron 40.0%
ACCATCAATAATACCCACCA+TGG - chr7_3:9185815-9185834 Msa1092430:intron 40.0%
!! ACCATGGTGGGTATTATTGA+TGG + chr7_3:9185819-9185838 None:intergenic 40.0%
! CTTATGGTTTTCAATCCGGT+AGG - chr7_3:9185954-9185973 Msa1092430:intron 40.0%
AACCGAACACTCTTCAATGA+GGG - chr7_3:9186038-9186057 Msa1092430:intron 40.0%
!! AACCCTCATTGAAGAGTGTT+CGG + chr7_3:9186043-9186062 None:intergenic 40.0%
TTTACGTCAGCATTAATGCC+GGG + chr7_3:9186077-9186096 None:intergenic 40.0%
CTTTACGTCAGCATTAATGC+CGG + chr7_3:9186078-9186097 None:intergenic 40.0%
!! GATGCCAAGTTCCATTTTTC+TGG + chr7_3:9186344-9186363 None:intergenic 40.0%
GTTATCATGACGAGCTTCAA+TGG - chr7_3:9186460-9186479 Msa1092430:intron 40.0%
GCATCAATCTTCACAGATTC+TGG + chr7_3:9186762-9186781 None:intergenic 40.0%
ATTGATGCACGTGATGTCAA+GGG - chr7_3:9186774-9186793 Msa1092430:intron 40.0%
TCATGTTGAAATATCCGTGC+TGG + chr7_3:9186831-9186850 None:intergenic 40.0%
GCATTTCTGCTTGTAGAAGA+TGG - chr7_3:9186930-9186949 Msa1092430:intron 40.0%
ATATGCAGACGACATACCAA+AGG + chr7_3:9186968-9186987 None:intergenic 40.0%
TGGTGAAAGGGGAATTAATG+AGG - chr7_3:9187013-9187032 Msa1092430:intron 40.0%
AATAGAAAGGATCTAGGGGT+CGG - chr7_3:9187055-9187074 Msa1092430:intron 40.0%
TTGTAAGAACATCCCCAATG+AGG - chr7_3:9187142-9187161 Msa1092430:intron 40.0%
TGTAAGAACATCCCCAATGA+GGG - chr7_3:9187143-9187162 Msa1092430:intron 40.0%
! TTGGCTCAACTGTTTTGCAA+CGG - chr7_3:9187188-9187207 Msa1092430:intron 40.0%
AAATATGACCCACTTCAGCA+AGG + chr7_3:9187215-9187234 None:intergenic 40.0%
! CTGAAGTGGGTCATATTTTG+TGG - chr7_3:9187217-9187236 Msa1092430:intron 40.0%
GAGAGAGTGAGAGAAAACTT+AGG + chr7_3:9187316-9187335 None:intergenic 40.0%
AGAGAATGCACATACGAGAA+CGG + chr7_3:9187395-9187414 None:intergenic 40.0%
AAGAAAAAAAAGGGCAGGCA+GGG + chr7_3:9187455-9187474 None:intergenic 40.0%
GGGCCACATGAAGAAAAAAA+AGG + chr7_3:9187465-9187484 None:intergenic 40.0%
ACCAGAAACTGAGGAAGTAA+GGG + chr7_3:9187485-9187504 None:intergenic 40.0%
AACCAGAAACTGAGGAAGTA+AGG + chr7_3:9187486-9187505 None:intergenic 40.0%
GCTCATAAGATCCTACCAAA+GGG + chr7_3:9187704-9187723 None:intergenic 40.0%
ATGAGCCATGTTACAATCCT+CGG - chr7_3:9187718-9187737 Msa1092430:intron 40.0%
AGATTCTACTATGGATCTGG+AGG + chr7_3:9187762-9187781 None:intergenic 40.0%
TCGAGATTCTACTATGGATC+TGG + chr7_3:9187765-9187784 None:intergenic 40.0%
!! TTTCTGGTTACATTGACCAG+AGG - chr7_3:9187854-9187873 Msa1092430:intron 40.0%
TAGTATTCGTGGACAGTTAC+AGG - chr7_3:9188105-9188124 Msa1092430:intron 40.0%
TCTCATGTCAAGGGAAAGAA+TGG + chr7_3:9188151-9188170 None:intergenic 40.0%
! GATGGTGTCAAGTTCTTGAT+TGG - chr7_3:9188339-9188358 Msa1092430:intron 40.0%
AACAGACCTGTCGGATTAAT+TGG + chr7_3:9188610-9188629 None:intergenic 40.0%
TTGGCAAAAAAAGAGGTAGC+AGG - chr7_3:9188847-9188866 Msa1092430:intron 40.0%
TGGCAAAAAAAGAGGTAGCA+GGG - chr7_3:9188848-9188867 Msa1092430:intron 40.0%
CAAAAGAAACAAGATGAGGG+GGG - chr7_3:9188930-9188949 Msa1092430:intron 40.0%
! AGCTTGGTATGCCAAGTTTT+AGG + chr7_3:9188986-9189005 None:intergenic 40.0%
CAGGTTGTTAAGGAAAAGCT+TGG + chr7_3:9189002-9189021 None:intergenic 40.0%
GGTGTATGTGTCCATTTCAA+GGG + chr7_3:9189325-9189344 None:intergenic 40.0%
! CTGCGACTTTCTATCTTTTC+AGG + chr7_3:9189430-9189449 None:intergenic 40.0%
AGAAAGTCGCAGAACAAGAA+AGG - chr7_3:9189438-9189457 Msa1092430:intron 40.0%
CATGATTTCCCAAAACCAGA+AGG + chr7_3:9189466-9189485 None:intergenic 40.0%
!!! CTGCTTGCTGCTTATTTTAC+AGG - chr7_3:9189562-9189581 Msa1092430:intron 40.0%
TCATCACTTAGCGGAATTTC+TGG - chr7_3:9189597-9189616 Msa1092430:intron 40.0%
TCAGAGAAGCTGAATATGGT+TGG - chr7_3:9189650-9189669 Msa1092430:intron 40.0%
!! CTAGTAGTGGATAGTCATCA+AGG - chr7_3:9189809-9189828 Msa1092430:intron 40.0%
CCATCGCCACAAATTGTGAA+AGG + chr7_3:9183358-9183377 None:intergenic 45.0%
CCTTTCACAATTTGTGGCGA+TGG - chr7_3:9183355-9183374 Msa1092430:three_prime_UTR 45.0%
! GATGAAGAAGATGACTTGGG+AGG + chr7_3:9183388-9183407 None:intergenic 45.0%
! TGAAGCTGAAAAAGCGGACT+TGG + chr7_3:9183495-9183514 None:intergenic 45.0%
TAGTCACGTTAGTCCCTGAA+TGG - chr7_3:9184035-9184054 Msa1092430:intron 45.0%
AGTCACGTTAGTCCCTGAAT+GGG - chr7_3:9184036-9184055 Msa1092430:intron 45.0%
GACTACTCCTTTCCCATTCA+GGG + chr7_3:9184051-9184070 None:intergenic 45.0%
TGACTACTCCTTTCCCATTC+AGG + chr7_3:9184052-9184071 None:intergenic 45.0%
TCCCTGAATGTAGACTCTGT+TGG - chr7_3:9184107-9184126 Msa1092430:intron 45.0%
GACCAACAGAGTCTACATTC+AGG + chr7_3:9184112-9184131 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG - chr7_3:9184150-9184169 Msa1092430:intron 45.0%
GACTAACGGAGTATGCATTC+AGG - chr7_3:9184182-9184201 Msa1092430:intron 45.0%
TATAAAGCAGGGACACCTCT+GGG + chr7_3:9185134-9185153 None:intergenic 45.0%
TTATAAAGCAGGGACACCTC+TGG + chr7_3:9185135-9185154 None:intergenic 45.0%
GAGGACACGGTTATAAAGCA+GGG + chr7_3:9185145-9185164 None:intergenic 45.0%
AGAGGACACGGTTATAAAGC+AGG + chr7_3:9185146-9185165 None:intergenic 45.0%
TATAACCGTGTCCTCTGTTC+TGG - chr7_3:9185150-9185169 Msa1092430:intron 45.0%
ATAACCGTGTCCTCTGTTCT+GGG - chr7_3:9185151-9185170 Msa1092430:intron 45.0%
GGGGGATAGAAATCATAGTC+TGG - chr7_3:9185294-9185313 Msa1092430:CDS 45.0%
CAAGGTGAACCGACAAACTT+TGG + chr7_3:9185368-9185387 None:intergenic 45.0%
CGGTTCACCTTGTGATTTAC+TGG - chr7_3:9185376-9185395 Msa1092430:intron 45.0%
AATCATGTAAGCCAGGGTGA+TGG - chr7_3:9185706-9185725 Msa1092430:intron 45.0%
CGTTAGAAAGCAACCATGGT+GGG + chr7_3:9185831-9185850 None:intergenic 45.0%
TCGTTAGAAAGCAACCATGG+TGG + chr7_3:9185832-9185851 None:intergenic 45.0%
GACTCGTTAGAAAGCAACCA+TGG + chr7_3:9185835-9185854 None:intergenic 45.0%
GAACCGAACACTCTTCAATG+AGG - chr7_3:9186037-9186056 Msa1092430:intron 45.0%
TTACGTCAGCATTAATGCCG+GGG + chr7_3:9186076-9186095 None:intergenic 45.0%
CGGCATTAATGCTGACGTAA+AGG - chr7_3:9186076-9186095 Msa1092430:intron 45.0%
GTTATCCTCTTCTGACCAAC+TGG - chr7_3:9186260-9186279 Msa1092430:intron 45.0%
AAAAGCCAGTTGGTCAGAAG+AGG + chr7_3:9186268-9186287 None:intergenic 45.0%
!!! TCTTCTGACCAACTGGCTTT+TGG - chr7_3:9186267-9186286 Msa1092430:intron 45.0%
GATTGATGCACGTGATGTCA+AGG - chr7_3:9186773-9186792 Msa1092430:intron 45.0%
! CGGTTTTCAGTCAGTTTGTC+TGG - chr7_3:9186801-9186820 Msa1092430:intron 45.0%
GTTGAAATATCCGTGCTGGA+AGG + chr7_3:9186827-9186846 None:intergenic 45.0%
GTGTTATGATAGGCACCCAA+TGG - chr7_3:9186993-9187012 Msa1092430:intron 45.0%
ATAGGCACCCAATGGTGAAA+GGG - chr7_3:9187001-9187020 Msa1092430:intron 45.0%
ATAGAAAGGATCTAGGGGTC+GGG - chr7_3:9187056-9187075 Msa1092430:intron 45.0%
GGGGATGTTCTTACAATGCA+AGG + chr7_3:9187138-9187157 None:intergenic 45.0%
TAGTCTACGATCCCTCATTG+GGG + chr7_3:9187157-9187176 None:intergenic 45.0%
CTAGTCTACGATCCCTCATT+GGG + chr7_3:9187158-9187177 None:intergenic 45.0%
CACTTTCTTTGATGAGACGC+AGG - chr7_3:9187262-9187281 Msa1092430:intron 45.0%
GAAGAAAAAAAAGGGCAGGC+AGG + chr7_3:9187456-9187475 None:intergenic 45.0%
TACACGACACGGTTCAAACA+GGG + chr7_3:9187545-9187564 None:intergenic 45.0%
TTACACGACACGGTTCAAAC+AGG + chr7_3:9187546-9187565 None:intergenic 45.0%
GGCTCATAAGATCCTACCAA+AGG + chr7_3:9187705-9187724 None:intergenic 45.0%
TGAGCCATGTTACAATCCTC+GGG - chr7_3:9187719-9187738 Msa1092430:intron 45.0%
GTAACCCGAGGATTGTAACA+TGG + chr7_3:9187726-9187745 None:intergenic 45.0%
GGATAAAAGATCGTAACCCG+AGG + chr7_3:9187738-9187757 None:intergenic 45.0%
TTCTACTATGGATCTGGAGG+AGG + chr7_3:9187759-9187778 None:intergenic 45.0%
AGAAAGCTGAGCATCTGCAA+TGG + chr7_3:9187839-9187858 None:intergenic 45.0%
ATTGCAGATGCTCAGCTTTC+TGG - chr7_3:9187838-9187857 Msa1092430:intron 45.0%
CTGTTCATGCCACTACTTGT+TGG - chr7_3:9187987-9188006 Msa1092430:intron 45.0%
TGTATCACGAGCTCCTATCT+AGG - chr7_3:9188228-9188247 Msa1092430:intron 45.0%
GTATCACGAGCTCCTATCTA+GGG - chr7_3:9188229-9188248 Msa1092430:intron 45.0%
CAAAAAAAGAGGTAGCAGGG+TGG - chr7_3:9188851-9188870 Msa1092430:intron 45.0%
TAGAGAAGGGAACCAATGTG+CGG + chr7_3:9189099-9189118 None:intergenic 45.0%
CGGTGTATGTGTCCATTTCA+AGG + chr7_3:9189326-9189345 None:intergenic 45.0%
GGCCCTTGAAATGAAGTATG+AGG - chr7_3:9189384-9189403 Msa1092430:intron 45.0%
AGAACAAGAAAGGTCCCTTC+TGG - chr7_3:9189448-9189467 Msa1092430:intron 45.0%
!!! AGAAAGGTCCCTTCTGGTTT+TGG - chr7_3:9189454-9189473 Msa1092430:intron 45.0%
!!! GAAAGGTCCCTTCTGGTTTT+GGG - chr7_3:9189455-9189474 Msa1092430:intron 45.0%
!!! AAATTTGATTTTTTTTATTA+AGG + chr7_3:9184453-9184472 None:intergenic 5.0%
! GTGGAAGAAGCGGTTTGGAA+TGG + chr7_3:9183447-9183466 None:intergenic 50.0%
AGAGAGTCAGGTGGAAGAAG+CGG + chr7_3:9183457-9183476 None:intergenic 50.0%
!! CTGAAAAAGCGGACTTGGTG+CGG + chr7_3:9183490-9183509 None:intergenic 50.0%
CGTTAGTCCCTGAATGGGAA+AGG - chr7_3:9184041-9184060 Msa1092430:intron 50.0%
AAGTCCCAGAACAGAGGACA+CGG + chr7_3:9185158-9185177 None:intergenic 50.0%
AGACAGAAGTCCCAGAACAG+AGG + chr7_3:9185164-9185183 None:intergenic 50.0%
GAGGGTTGTCTATCTTTCCC+CGG - chr7_3:9186056-9186075 Msa1092430:intron 50.0%
CACGTGATGTCAAGGGAACA+CGG - chr7_3:9186781-9186800 Msa1092430:intron 50.0%
GATAGGCACCCAATGGTGAA+AGG - chr7_3:9187000-9187019 Msa1092430:intron 50.0%
TAGGCACCCAATGGTGAAAG+GGG - chr7_3:9187002-9187021 Msa1092430:intron 50.0%
CCTAGTCTACGATCCCTCAT+TGG + chr7_3:9187159-9187178 None:intergenic 50.0%
CCAATGAGGGATCGTAGACT+AGG - chr7_3:9187156-9187175 Msa1092430:intron 50.0%
GTAGACTAGGATCGCACGTT+TGG - chr7_3:9187169-9187188 Msa1092430:intron 50.0%
CAAGAAGGAGCAACATCGCA+GGG + chr7_3:9187352-9187371 None:intergenic 50.0%
!! CAGTTGGTGGCAATGCAAGA+AGG + chr7_3:9187367-9187386 None:intergenic 50.0%
AAAGGTGGAGAACACGTTGC+AGG + chr7_3:9187432-9187451 None:intergenic 50.0%
AAAAAAGGGCAGGCAGGGAA+AGG + chr7_3:9187450-9187469 None:intergenic 50.0%
GCCCTTACTTCCTCAGTTTC+TGG - chr7_3:9187481-9187500 Msa1092430:intron 50.0%
GACACGGTTCAAACAGGGTA+GGG + chr7_3:9187540-9187559 None:intergenic 50.0%
TTGAGCGCTTACCCCAAATG+AGG - chr7_3:9187807-9187826 Msa1092430:intron 50.0%
TGAGCGCTTACCCCAAATGA+GGG - chr7_3:9187808-9187827 Msa1092430:intron 50.0%
AATGGAGCTCCCCTCATTTG+GGG + chr7_3:9187821-9187840 None:intergenic 50.0%
CAATGGAGCTCCCCTCATTT+GGG + chr7_3:9187822-9187841 None:intergenic 50.0%
GGATGCAGGTTTCCCTAGAT+AGG + chr7_3:9188244-9188263 None:intergenic 50.0%
AAACAAGATGAGGGGGGACT+AGG - chr7_3:9188936-9188955 Msa1092430:intron 50.0%
GCGGATTCCCTTGCAAACAT+AGG + chr7_3:9189080-9189099 None:intergenic 50.0%
TTGCAAGGGAATCCGCACAT+TGG - chr7_3:9189084-9189103 Msa1092430:intron 50.0%
CTAACGATGCTATCGTGCCT+TGG + chr7_3:9189193-9189212 None:intergenic 50.0%
! TGATTCTCAGCTGGTGGTGA+TGG + chr7_3:9189222-9189241 None:intergenic 50.0%
! GTTGGAGACTGATTCTCAGC+TGG + chr7_3:9189231-9189250 None:intergenic 50.0%
!! ATTCAGGTTGCTCTGAAGGG+TGG - chr7_3:9189860-9189879 Msa1092430:CDS 50.0%
CAAGTGCAGAACAGCGGTAG+TGG + chr7_3:9183421-9183440 None:intergenic 55.0%
TGGCAGCAAGTGCAGAACAG+CGG + chr7_3:9183427-9183446 None:intergenic 55.0%
GTCAGGTGGAAGAAGCGGTT+TGG + chr7_3:9183452-9183471 None:intergenic 55.0%
GGTCTTTCAGCACCCCAAGT+AGG - chr7_3:9185918-9185937 Msa1092430:intron 55.0%
TTCAATCCGGTAGGCGAACG+TGG - chr7_3:9185963-9185982 Msa1092430:intron 55.0%
GGCACTCACCAAAAGCCAGT+TGG + chr7_3:9186278-9186297 None:intergenic 55.0%
!! CTGGCTTTTGGTGAGTGCCA+CGG - chr7_3:9186279-9186298 Msa1092430:intron 55.0%
! GTTTGTCTGGCCTTCCAGCA+CGG - chr7_3:9186814-9186833 Msa1092430:intron 55.0%
TGCAACGGACCTTGCTGAAG+TGG - chr7_3:9187203-9187222 Msa1092430:intron 55.0%
GCAACGGACCTTGCTGAAGT+GGG - chr7_3:9187204-9187223 Msa1092430:intron 55.0%
GCAAGAAGGAGCAACATCGC+AGG + chr7_3:9187353-9187372 None:intergenic 55.0%
TACGAGAACGGCGTTGCAGT+TGG + chr7_3:9187383-9187402 None:intergenic 55.0%
TTCAAACAGGGTAGGGCAGG+GGG + chr7_3:9187533-9187552 None:intergenic 55.0%
GTTCAAACAGGGTAGGGCAG+GGG + chr7_3:9187534-9187553 None:intergenic 55.0%
GGTTCAAACAGGGTAGGGCA+GGG + chr7_3:9187535-9187554 None:intergenic 55.0%
CGACACGGTTCAAACAGGGT+AGG + chr7_3:9187541-9187560 None:intergenic 55.0%
GAGCGCTTACCCCAAATGAG+GGG - chr7_3:9187809-9187828 Msa1092430:intron 55.0%
GCAATGGAGCTCCCCTCATT+TGG + chr7_3:9187823-9187842 None:intergenic 55.0%
! GGAGACTGATTCTCAGCTGG+TGG + chr7_3:9189228-9189247 None:intergenic 55.0%
! CAGAACAGCGGTAGTGGTGG+TGG + chr7_3:9183415-9183434 None:intergenic 60.0%
! GTGCAGAACAGCGGTAGTGG+TGG + chr7_3:9183418-9183437 None:intergenic 60.0%
TGGAGGAGGAGAGAGTCAGG+TGG + chr7_3:9183466-9183485 None:intergenic 60.0%
!! AAAAGCGGACTTGGTGCGGC+TGG + chr7_3:9183486-9183505 None:intergenic 60.0%
!! AGCAGGGACACCTCTGGGAT+TGG + chr7_3:9185129-9185148 None:intergenic 60.0%
CCTTCACCACGTTCGCCTAC+CGG + chr7_3:9185972-9185991 None:intergenic 60.0%
GAAGGAGCAACATCGCAGGG+AGG + chr7_3:9187349-9187368 None:intergenic 60.0%
GAGAACGGCGTTGCAGTTGG+TGG + chr7_3:9187380-9187399 None:intergenic 60.0%
GGTGGAGAACACGTTGCAGG+CGG + chr7_3:9187429-9187448 None:intergenic 60.0%
AAAGGGCAGGCAGGGAAAGG+TGG + chr7_3:9187447-9187466 None:intergenic 60.0%
CGGTTCAAACAGGGTAGGGC+AGG + chr7_3:9187536-9187555 None:intergenic 60.0%
TGCGCGCGCGCTTATGTTTG+TGG + chr7_3:9188779-9188798 None:intergenic 60.0%
GGCTGGAGGAGGAGAGAGTC+AGG + chr7_3:9183469-9183488 None:intergenic 65.0%
CCGGTAGGCGAACGTGGTGA+AGG - chr7_3:9185969-9185988 Msa1092430:intron 65.0%
!! GGACTTGGTGCGGCTGGAGG+AGG + chr7_3:9183480-9183499 None:intergenic 70.0%
!! AGCGGACTTGGTGCGGCTGG+AGG + chr7_3:9183483-9183502 None:intergenic 70.0%
CGCGCTCGCACACACACGCA+TGG - chr7_3:9188803-9188822 Msa1092430:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 9183343 9190048 9183343 ID=Msa1092430;Name=Msa1092430
chr7_3 mRNA 9183343 9190048 9183343 ID=Msa1092430-mRNA-1;Parent=Msa1092430;Name=Msa1092430-mRNA-1;_AED=0.04;_eAED=0.04;_QI=31|0.83|0.85|1|0.83|0.71|7|473|227
chr7_3 exon 9183343 9183807 9183343 ID=Msa1092430-mRNA-1:exon:2637;Parent=Msa1092430-mRNA-1
chr7_3 exon 9183897 9184006 9183897 ID=Msa1092430-mRNA-1:exon:2636;Parent=Msa1092430-mRNA-1
chr7_3 exon 9185265 9185327 9185265 ID=Msa1092430-mRNA-1:exon:2635;Parent=Msa1092430-mRNA-1
chr7_3 exon 9186525 9186635 9186525 ID=Msa1092430-mRNA-1:exon:2634;Parent=Msa1092430-mRNA-1
chr7_3 exon 9187294 9187486 9187294 ID=Msa1092430-mRNA-1:exon:2633;Parent=Msa1092430-mRNA-1
chr7_3 exon 9189712 9189766 9189712 ID=Msa1092430-mRNA-1:exon:2632;Parent=Msa1092430-mRNA-1
chr7_3 exon 9189858 9190048 9189858 ID=Msa1092430-mRNA-1:exon:2631;Parent=Msa1092430-mRNA-1
chr7_3 five_prime_UTR 9190018 9190048 9190018 ID=Msa1092430-mRNA-1:five_prime_utr;Parent=Msa1092430-mRNA-1
chr7_3 CDS 9189858 9190017 9189858 ID=Msa1092430-mRNA-1:cds;Parent=Msa1092430-mRNA-1
chr7_3 CDS 9189712 9189766 9189712 ID=Msa1092430-mRNA-1:cds;Parent=Msa1092430-mRNA-1
chr7_3 CDS 9187294 9187486 9187294 ID=Msa1092430-mRNA-1:cds;Parent=Msa1092430-mRNA-1
chr7_3 CDS 9186525 9186635 9186525 ID=Msa1092430-mRNA-1:cds;Parent=Msa1092430-mRNA-1
chr7_3 CDS 9185265 9185327 9185265 ID=Msa1092430-mRNA-1:cds;Parent=Msa1092430-mRNA-1
chr7_3 CDS 9183905 9184006 9183905 ID=Msa1092430-mRNA-1:cds;Parent=Msa1092430-mRNA-1
chr7_3 three_prime_UTR 9183897 9183904 9183897 ID=Msa1092430-mRNA-1:three_prime_utr;Parent=Msa1092430-mRNA-1
chr7_3 three_prime_UTR 9183343 9183807 9183343 ID=Msa1092430-mRNA-1:three_prime_utr;Parent=Msa1092430-mRNA-1
Gene Sequence

>Msa1092430

ATGGCTTCACTCCTCCCAAGTCATCTTCTTCATCATTACCACCACCACTACCGCTGTTCTGCACTTGCTGCCATTCCAAACCGCTTCTTCCACCTGACTCTCTCCTCCTCCAGCCGCACCAAGTCCGCTTTTTCAGCTTCACAAAACGAACTCGCTTCTCTTGGTGATTTAGAATTTGAAGCGCCGCTGAAAATAGTGAAATATCCAGACCCCAAAACTGATGGTATTGGTCTTTCAGCACCCCAAGTAGGAATTAATGTTCAACTTATGGTTTTCAATCCGGTAGGCGAACGTGGTGAAGGAGAAGAAATTGTTCTTGTAAACCCAAGAGTTAGTAAATACTCAATGAACCGAACACTCTTCAATGAGGGTTGTCTATCTTTCCCCGGCATTAATGCTGACGTAAAGAGACCAGAATCTGTGAAGATTGATGCACGTGATGTCAAGGGAACACGGTTTTCAGTCAGTTTGTCTGGCCTTCCAGCACGGATATTTCAACATGAATTTGACCATCTACAGGGAATCCTTTTCTTTGAGAGAATGACTGACGAAGTTCTTGATAGTATTCGTGGACAGTTACAGGCCCTTGAAATGAAGTATGAGGAAATGACTGGATTCCCAAGTCCTGAAAAGATAGAAAGTCGCAGAACAAGAAAGGTCCCTTCTGGTTTTGGGAAATCATGA

Protein sequence

>Msa1092430

MASLLPSHLLHHYHHHYRCSALAAIPNRFFHLTLSSSSRTKSAFSASQNELASLGDLEFEAPLKIVKYPDPKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVSKYSMNRTLFNEGCLSFPGINADVKRPESVKIDARDVKGTRFSVSLSGLPARIFQHEFDHLQGILFFERMTDEVLDSIRGQLQALEMKYEEMTGFPSPEKIESRRTRKVPSGFGKS*