AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0459970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459970 MtrunA17_Chr3g0108681 92.991 214 11 2 1 210 1 214 3.34e-136 380
Msa0459970 MtrunA17_Chr3g0129901 44.144 111 62 0 100 210 3 113 9.32e-29 105
Msa0459970 MtrunA17_Chr8g0390801 44.144 111 62 0 100 210 3 113 1.66e-28 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459970 AT3G54210.1 69.767 215 56 3 1 210 1 211 5.31e-97 281
Msa0459970 AT5G09770.1 45.946 111 60 0 100 210 3 113 2.16e-29 107
Msa0459970 AT5G64650.1 45.045 111 61 0 100 210 3 113 8.55e-29 105

Find 102 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGATGCGGCCATATTTA+AGG 0.201236 3_3:+56961241 None:intergenic
TTGTGTGAACTTTGCATAAA+TGG 0.203989 3_3:-56960713 Msa0459970:three_prime_UTR
GGAAGTAGGGATTGGGGTTT+GGG 0.219531 3_3:+56962409 None:intergenic
ATTATTAGCGGCCGCCCTTA+TGG 0.264238 3_3:-56960974 Msa0459970:three_prime_UTR
GGGAAGTAGGGATTGGGGTT+TGG 0.268894 3_3:+56962408 None:intergenic
TAAGCAGAAGCCTGAGTTCT+TGG 0.275049 3_3:+56960738 None:intergenic
TTTGTTATACATGATATTCT+TGG 0.299109 3_3:-56960764 Msa0459970:three_prime_UTR
ATGAGTGCCTTACGCTGATC+TGG 0.303880 3_3:+56961285 None:intergenic
TAGGGATTGGGGTTTGGGTC+TGG 0.305301 3_3:+56962414 None:intergenic
AAGATGGTTCTCTACATAAA+AGG 0.312212 3_3:-56961158 Msa0459970:CDS
GGGGTTTGGGTCTGGAAATT+CGG 0.347249 3_3:+56962422 None:intergenic
TTTCTTTCGCCATAACGTTC+TGG 0.358503 3_3:+56961075 None:intergenic
ACGACACAGCTCCTTAAATA+TGG 0.358835 3_3:-56961252 Msa0459970:CDS
GGGCAAGAGCCAGTGCAATT+AGG 0.362008 3_3:-56961212 Msa0459970:CDS
TCGCCATTGTTGCTGCTTGA+AGG 0.377311 3_3:+56962587 None:intergenic
TTATTAGCGGCCGCCCTTAT+GGG 0.384125 3_3:-56960973 Msa0459970:three_prime_UTR
CATTATCACCCCGCCTTGGT+AGG 0.385376 3_3:+56961025 None:intergenic
GCTAATAATTGCATCCCATA+AGG 0.390868 3_3:+56960959 None:intergenic
CCGACCACCATTGTCAATAA+TGG 0.400202 3_3:+56961356 None:intergenic
CCTGATGAAGGAGCGAAGAT+TGG 0.401689 3_3:+56962361 None:intergenic
GAAAGAGGGAAGTAGGGATT+GGG 0.408102 3_3:+56962402 None:intergenic
GCTAGTGGTGGTGGAGTTGT+TGG 0.408247 3_3:+56962540 None:intergenic
AATGGCGAACGTGGCAGTTA+TGG 0.410731 3_3:-56962572 Msa0459970:CDS
CTGGAAATTCGGAGTGTTGT+TGG 0.417947 3_3:+56962433 None:intergenic
TGAGTGCCTTACGCTGATCT+GGG 0.418715 3_3:+56961286 None:intergenic
GCAGAGGTTCCAGAACGTTA+TGG 0.426513 3_3:-56961084 Msa0459970:CDS
AATTGCACTGGCTCTTGCCC+TGG 0.431540 3_3:+56961215 None:intergenic
CCAATCTTCGCTCCTTCATC+AGG 0.432628 3_3:-56962361 Msa0459970:intron
GCTGCTTGAAGGAGAGGAAC+TGG 0.449869 3_3:+56962598 None:intergenic
GCTCCATCTGCTAGTGGTGG+TGG 0.454339 3_3:+56962531 None:intergenic
GGAAAGTGCCGAAACTCAAC+AGG 0.454471 3_3:-56961311 Msa0459970:CDS
GCGGAAGTAGGAGGAATTGA+AGG 0.464667 3_3:+56962484 None:intergenic
GAACGTTATGGCGAAAGAAA+TGG 0.468052 3_3:-56961072 Msa0459970:CDS
TGAACTTGTGTAATTATTAG+CGG 0.468599 3_3:-56960986 Msa0459970:exon
CTAATAATTGCATCCCATAA+GGG 0.470136 3_3:+56960960 None:intergenic
TATAAGAACCCTACCAAGGC+GGG 0.471140 3_3:-56961034 Msa0459970:CDS
ATTTAAGGAGCTGTGTCGTT+AGG 0.475405 3_3:+56961256 None:intergenic
CTGATGAAGGAGCGAAGATT+GGG 0.477070 3_3:+56962362 None:intergenic
GGTGGTGGAGTTGTTGGTGG+TGG 0.477771 3_3:+56962546 None:intergenic
AAAAGAAAAGTGGATAGAGA+TGG 0.481768 3_3:+56962659 None:intergenic
TCCCTACTTCCCTCTTTCAC+CGG 0.487319 3_3:-56962397 Msa0459970:CDS
GATTGGGAGAGGGCGAAGTC+CGG 0.488337 3_3:+56962378 None:intergenic
TTTACAGGATAAAAGAAAAG+TGG 0.489724 3_3:+56962649 None:intergenic
ATGATCACTCTTGCAAAAGA+TGG 0.491383 3_3:-56961174 Msa0459970:CDS
AGTGGTGGTGGAGTTGTTGG+TGG 0.493987 3_3:+56962543 None:intergenic
AAAGAAAAGTGGATAGAGAT+GGG 0.496119 3_3:+56962660 None:intergenic
AGTAGGAGGAATTGAAGGTA+AGG 0.505266 3_3:+56962489 None:intergenic
GCGGGGTGATAATGCACCTA+TGG 0.509687 3_3:-56961016 Msa0459970:CDS
CATTATTGACAATGGTGGTC+GGG 0.510866 3_3:-56961355 Msa0459970:CDS
TGAAAGAGGGAAGTAGGGAT+TGG 0.517635 3_3:+56962401 None:intergenic
AGGGCGAAGTCCGGTGAAAG+AGG 0.518343 3_3:+56962387 None:intergenic
GTCCGGTGAAAGAGGGAAGT+AGG 0.521063 3_3:+56962395 None:intergenic
TTAGACTCAACTGTTACAGT+TGG 0.521836 3_3:+56960903 None:intergenic
TTCTTGGCTACCAAGAACTC+AGG 0.535154 3_3:-56960748 Msa0459970:three_prime_UTR
CCATTATTGACAATGGTGGT+CGG 0.536928 3_3:-56961356 Msa0459970:CDS
TGGTATATGCATAATGTGAA+AGG 0.537153 3_3:-56960693 None:intergenic
CGGGTCTATGCTATGAGACA+TGG 0.537503 3_3:-56961336 Msa0459970:CDS
TGCACTGGCTCTTGCCCTGG+TGG 0.546496 3_3:+56961218 None:intergenic
AAAGAGGGAAGTAGGGATTG+GGG 0.547478 3_3:+56962403 None:intergenic
CATAAAAGGAGACAAGCTCT+TGG 0.549777 3_3:-56961144 Msa0459970:CDS
ATTATCACCCCGCCTTGGTA+GGG 0.549919 3_3:+56961026 None:intergenic
AACATACTTCCTAATTGCAC+TGG 0.550604 3_3:+56961203 None:intergenic
TCCGGTGAAAGAGGGAAGTA+GGG 0.554379 3_3:+56962396 None:intergenic
CGCAATGAAGAAGCGGAAGT+AGG 0.554403 3_3:+56962472 None:intergenic
AATACAAATACAACTAAACA+TGG 0.556087 3_3:+56960872 None:intergenic
TGTTCATGCTTTATTTGCAG+AGG 0.556642 3_3:-56961100 Msa0459970:CDS
AAGGAAGGTATACCTGATGA+AGG 0.558196 3_3:+56962349 None:intergenic
ATTGTTGCTGCTTGAAGGAG+AGG 0.561932 3_3:+56962592 None:intergenic
AGTTTCACCATTATTGACAA+TGG 0.570374 3_3:-56961363 Msa0459970:CDS
GAGTAGCGGCAATTCTACAC+TGG 0.575313 3_3:+56962700 None:intergenic
GAAGGAGCGAAGATTGGGAG+AGG 0.578695 3_3:+56962367 None:intergenic
TCTCCTTCAAGCAGCAACAA+TGG 0.581627 3_3:-56962590 Msa0459970:exon
GGGCGAAGTCCGGTGAAAGA+GGG 0.581835 3_3:+56962388 None:intergenic
GAGTGCCTTACGCTGATCTG+GGG 0.592443 3_3:+56961287 None:intergenic
ACAAGTTCAATGTATGCCAT+AGG 0.593731 3_3:+56961000 None:intergenic
GGAGCTGTGTCGTTAGGCCA+CGG 0.596746 3_3:+56961262 None:intergenic
TTCACCATTATTGACAATGG+TGG 0.599206 3_3:-56961360 Msa0459970:CDS
ATGGCCGCATCAAGACCACC+AGG 0.604923 3_3:-56961233 Msa0459970:CDS
AGCAGCAACAATGGCGAACG+TGG 0.606238 3_3:-56962581 Msa0459970:exon
GGTGCATTATCACCCCGCCT+TGG 0.608519 3_3:+56961021 None:intergenic
ACTCCACCACCACTAGCAGA+TGG 0.614018 3_3:-56962534 Msa0459970:CDS
AGACATGCTCCATCTGCTAG+TGG 0.617712 3_3:+56962525 None:intergenic
AGTAGCGGCAATTCTACACT+GGG 0.620988 3_3:+56962701 None:intergenic
AATGAAGAAGCGGAAGTAGG+AGG 0.624583 3_3:+56962475 None:intergenic
CGTTATGGCGAAAGAAATGG+TGG 0.626402 3_3:-56961069 Msa0459970:CDS
GAGAGAGTAAGATAGAGTAG+CGG 0.628016 3_3:+56962686 None:intergenic
TTGCCCTGGTGGTCTTGATG+CGG 0.630759 3_3:+56961229 None:intergenic
AAGGAGCGAAGATTGGGAGA+GGG 0.632709 3_3:+56962368 None:intergenic
GCGGCAATTCTACACTGGGA+GGG 0.633151 3_3:+56962705 None:intergenic
AGTGAAGCGCAATGAAGAAG+CGG 0.636897 3_3:+56962465 None:intergenic
CAGCGTAAGGCACTCATCCG+TGG 0.645817 3_3:-56961279 Msa0459970:CDS
AGTGCCTTACGCTGATCTGG+GGG 0.647108 3_3:+56961288 None:intergenic
AGCGGCAATTCTACACTGGG+AGG 0.650112 3_3:+56962704 None:intergenic
AAAATTGAGAATTGAGACAC+TGG 0.650116 3_3:-56962629 Msa0459970:five_prime_UTR
ATACAAATACAACTAAACAT+GGG 0.657344 3_3:+56960873 None:intergenic
CATGCTCCATCTGCTAGTGG+TGG 0.672661 3_3:+56962528 None:intergenic
ATAAGAACCCTACCAAGGCG+GGG 0.673186 3_3:-56961033 Msa0459970:CDS
GAATTATAAGAACCCTACCA+AGG 0.696668 3_3:-56961038 Msa0459970:CDS
ATAATTGCATCCCATAAGGG+CGG 0.717946 3_3:+56960963 None:intergenic
TTATAAGAACCCTACCAAGG+CGG 0.735151 3_3:-56961035 Msa0459970:CDS
TCTATGCTATGAGACATGGA+AGG 0.735339 3_3:-56961332 Msa0459970:CDS
TGGCCGCATCAAGACCACCA+GGG 0.750384 3_3:-56961232 Msa0459970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTATTAGTAGTTTT+TGG - chr3_3:56961221-56961240 Msa0459970:CDS 15.0%
!!! TTTTGTTTATTAGTAGTTTT+TGG - chr3_3:56961221-56961240 Msa0459970:CDS 15.0%
!!! AAATTATGCCTTTTGTTTTA+TGG - chr3_3:56961135-56961154 Msa0459970:CDS 20.0%
!!! AATTATGCCTTTTGTTTTAT+GGG - chr3_3:56961136-56961155 Msa0459970:CDS 20.0%
!! ATTTAATTATTGTATTGCCT+CGG - chr3_3:56961284-56961303 Msa0459970:CDS 20.0%
!! ATACAAATACAACTAAACAT+GGG + chr3_3:56962555-56962574 None:intergenic 20.0%
!! AATACAAATACAACTAAACA+TGG + chr3_3:56962556-56962575 None:intergenic 20.0%
!!! TTTGTTATACATGATATTCT+TGG - chr3_3:56962661-56962680 Msa0459970:five_prime_UTR 20.0%
!!! AAATTATGCCTTTTGTTTTA+TGG - chr3_3:56961135-56961154 Msa0459970:CDS 20.0%
!!! AATTATGCCTTTTGTTTTAT+GGG - chr3_3:56961136-56961155 Msa0459970:CDS 20.0%
!! ATTTAATTATTGTATTGCCT+CGG - chr3_3:56961284-56961303 Msa0459970:CDS 20.0%
!! ATACAAATACAACTAAACAT+GGG + chr3_3:56962555-56962574 None:intergenic 20.0%
!! AATACAAATACAACTAAACA+TGG + chr3_3:56962556-56962575 None:intergenic 20.0%
!!! TTTGTTATACATGATATTCT+TGG - chr3_3:56962661-56962680 Msa0459970:five_prime_UTR 20.0%
! TTTACAGGATAAAAGAAAAG+TGG + chr3_3:56960779-56960798 None:intergenic 25.0%
!! AAACAAAAGGCATAATTTCA+TGG + chr3_3:56961133-56961152 None:intergenic 25.0%
!!! ATTATGCCTTTTGTTTTATG+GGG - chr3_3:56961137-56961156 Msa0459970:CDS 25.0%
! ATTGAAGTTCTATTATCACT+TGG - chr3_3:56961162-56961181 Msa0459970:CDS 25.0%
! TTAAATGTAACCATATGTGT+CGG + chr3_3:56961270-56961289 None:intergenic 25.0%
! AAAGATGATTCTTAAAACTC+GGG + chr3_3:56961593-56961612 None:intergenic 25.0%
! CAAAGATGATTCTTAAAACT+CGG + chr3_3:56961594-56961613 None:intergenic 25.0%
! AGTTATTGAAGTAGTATAAC+TGG + chr3_3:56961750-56961769 None:intergenic 25.0%
!!! CAAAAGATAATGGATACTAT+GGG + chr3_3:56961985-56962004 None:intergenic 25.0%
!!! TCAAAAGATAATGGATACTA+TGG + chr3_3:56961986-56962005 None:intergenic 25.0%
! TGCTGAATTTCAAAAGATAA+TGG + chr3_3:56961995-56962014 None:intergenic 25.0%
! TGAACTTGTGTAATTATTAG+CGG - chr3_3:56962439-56962458 Msa0459970:CDS 25.0%
!!! TCTTTTTTGAGTTGTATGTA+CGG - chr3_3:56962588-56962607 Msa0459970:exon 25.0%
! TTTACAGGATAAAAGAAAAG+TGG + chr3_3:56960779-56960798 None:intergenic 25.0%
!! AAACAAAAGGCATAATTTCA+TGG + chr3_3:56961133-56961152 None:intergenic 25.0%
!!! ATTATGCCTTTTGTTTTATG+GGG - chr3_3:56961137-56961156 Msa0459970:CDS 25.0%
! ATTGAAGTTCTATTATCACT+TGG - chr3_3:56961162-56961181 Msa0459970:CDS 25.0%
! TTAAATGTAACCATATGTGT+CGG + chr3_3:56961270-56961289 None:intergenic 25.0%
! AAAGATGATTCTTAAAACTC+GGG + chr3_3:56961593-56961612 None:intergenic 25.0%
! CAAAGATGATTCTTAAAACT+CGG + chr3_3:56961594-56961613 None:intergenic 25.0%
! AGTTATTGAAGTAGTATAAC+TGG + chr3_3:56961750-56961769 None:intergenic 25.0%
!!! CAAAAGATAATGGATACTAT+GGG + chr3_3:56961985-56962004 None:intergenic 25.0%
!!! TCAAAAGATAATGGATACTA+TGG + chr3_3:56961986-56962005 None:intergenic 25.0%
! TGCTGAATTTCAAAAGATAA+TGG + chr3_3:56961995-56962014 None:intergenic 25.0%
! TGAACTTGTGTAATTATTAG+CGG - chr3_3:56962439-56962458 Msa0459970:CDS 25.0%
!!! TCTTTTTTGAGTTGTATGTA+CGG - chr3_3:56962588-56962607 Msa0459970:exon 25.0%
AAAGAAAAGTGGATAGAGAT+GGG + chr3_3:56960768-56960787 None:intergenic 30.0%
AAAAGAAAAGTGGATAGAGA+TGG + chr3_3:56960769-56960788 None:intergenic 30.0%
! GTCTCAATTCTCAATTTTAC+AGG + chr3_3:56960794-56960813 None:intergenic 30.0%
AAAATTGAGAATTGAGACAC+TGG - chr3_3:56960796-56960815 Msa0459970:three_prime_UTR 30.0%
CAATTTCCCCATAAAACAAA+AGG + chr3_3:56961146-56961165 None:intergenic 30.0%
TTTGCATCTTGCTAGAAATA+CGG - chr3_3:56961494-56961513 Msa0459970:intron 30.0%
GTAGTTCTCACCTTAAAATT+CGG - chr3_3:56961542-56961561 Msa0459970:intron 30.0%
!! ACCTTAAAATTCGGTTTTGA+CGG - chr3_3:56961551-56961570 Msa0459970:intron 30.0%
ATGATACCATGTTATAAACC+AGG + chr3_3:56961658-56961677 None:intergenic 30.0%
ATAACTGGATTGAATTTCAG+TGG + chr3_3:56961735-56961754 None:intergenic 30.0%
AGTTTCACCATTATTGACAA+TGG - chr3_3:56962062-56962081 Msa0459970:intron 30.0%
AAGATGGTTCTCTACATAAA+AGG - chr3_3:56962267-56962286 Msa0459970:intron 30.0%
CTAATAATTGCATCCCATAA+GGG + chr3_3:56962468-56962487 None:intergenic 30.0%
! GAACTTTTGCAGATTAAAGA+TGG + chr3_3:56962622-56962641 None:intergenic 30.0%
TTGTGTGAACTTTGCATAAA+TGG - chr3_3:56962712-56962731 Msa0459970:five_prime_UTR 30.0%
AAAGAAAAGTGGATAGAGAT+GGG + chr3_3:56960768-56960787 None:intergenic 30.0%
AAAAGAAAAGTGGATAGAGA+TGG + chr3_3:56960769-56960788 None:intergenic 30.0%
! GTCTCAATTCTCAATTTTAC+AGG + chr3_3:56960794-56960813 None:intergenic 30.0%
AAAATTGAGAATTGAGACAC+TGG - chr3_3:56960796-56960815 Msa0459970:three_prime_UTR 30.0%
CAATTTCCCCATAAAACAAA+AGG + chr3_3:56961146-56961165 None:intergenic 30.0%
TTTGCATCTTGCTAGAAATA+CGG - chr3_3:56961494-56961513 Msa0459970:intron 30.0%
GTAGTTCTCACCTTAAAATT+CGG - chr3_3:56961542-56961561 Msa0459970:intron 30.0%
!! ACCTTAAAATTCGGTTTTGA+CGG - chr3_3:56961551-56961570 Msa0459970:intron 30.0%
ATGATACCATGTTATAAACC+AGG + chr3_3:56961658-56961677 None:intergenic 30.0%
ATAACTGGATTGAATTTCAG+TGG + chr3_3:56961735-56961754 None:intergenic 30.0%
AGTTTCACCATTATTGACAA+TGG - chr3_3:56962062-56962081 Msa0459970:intron 30.0%
AAGATGGTTCTCTACATAAA+AGG - chr3_3:56962267-56962286 Msa0459970:intron 30.0%
CTAATAATTGCATCCCATAA+GGG + chr3_3:56962468-56962487 None:intergenic 30.0%
! GAACTTTTGCAGATTAAAGA+TGG + chr3_3:56962622-56962641 None:intergenic 30.0%
TTGTGTGAACTTTGCATAAA+TGG - chr3_3:56962712-56962731 Msa0459970:five_prime_UTR 30.0%
ATGCAATGGAAAAGAAAGGA+AGG + chr3_3:56961094-56961113 None:intergenic 35.0%
GTGAATGCAATGGAAAAGAA+AGG + chr3_3:56961098-56961117 None:intergenic 35.0%
TCGACACAAATAATAATCCG+AGG + chr3_3:56961304-56961323 None:intergenic 35.0%
TCTTGCTAGAAATACGGTAT+AGG - chr3_3:56961500-56961519 Msa0459970:intron 35.0%
! TCCGTCAAAACCGAATTTTA+AGG + chr3_3:56961555-56961574 None:intergenic 35.0%
ATGATTCTTAAAACTCGGGT+TGG + chr3_3:56961589-56961608 None:intergenic 35.0%
TTATAAACCAGGAATCCAAG+AGG + chr3_3:56961647-56961666 None:intergenic 35.0%
TGGATTCCTGGTTTATAACA+TGG - chr3_3:56961649-56961668 Msa0459970:intron 35.0%
AAGTAAGGCACAGTGTTTAA+CGG + chr3_3:56961690-56961709 None:intergenic 35.0%
!! CAAGTAAAACGAGGTATTGA+TGG + chr3_3:56961884-56961903 None:intergenic 35.0%
CAACTTGAACAAGTAAAACG+AGG + chr3_3:56961893-56961912 None:intergenic 35.0%
TTCACCATTATTGACAATGG+TGG - chr3_3:56962065-56962084 Msa0459970:intron 35.0%
AACATACTTCCTAATTGCAC+TGG + chr3_3:56962225-56962244 None:intergenic 35.0%
ATGATCACTCTTGCAAAAGA+TGG - chr3_3:56962251-56962270 Msa0459970:intron 35.0%
!! TGTTCATGCTTTATTTGCAG+AGG - chr3_3:56962325-56962344 Msa0459970:intron 35.0%
GAATTATAAGAACCCTACCA+AGG - chr3_3:56962387-56962406 Msa0459970:CDS 35.0%
ACAAGTTCAATGTATGCCAT+AGG + chr3_3:56962428-56962447 None:intergenic 35.0%
GCTAATAATTGCATCCCATA+AGG + chr3_3:56962469-56962488 None:intergenic 35.0%
TTAGACTCAACTGTTACAGT+TGG + chr3_3:56962525-56962544 None:intergenic 35.0%
ATGCAATGGAAAAGAAAGGA+AGG + chr3_3:56961094-56961113 None:intergenic 35.0%
GTGAATGCAATGGAAAAGAA+AGG + chr3_3:56961098-56961117 None:intergenic 35.0%
TCGACACAAATAATAATCCG+AGG + chr3_3:56961304-56961323 None:intergenic 35.0%
TCTTGCTAGAAATACGGTAT+AGG - chr3_3:56961500-56961519 Msa0459970:intron 35.0%
! TCCGTCAAAACCGAATTTTA+AGG + chr3_3:56961555-56961574 None:intergenic 35.0%
ATGATTCTTAAAACTCGGGT+TGG + chr3_3:56961589-56961608 None:intergenic 35.0%
TTATAAACCAGGAATCCAAG+AGG + chr3_3:56961647-56961666 None:intergenic 35.0%
TGGATTCCTGGTTTATAACA+TGG - chr3_3:56961649-56961668 Msa0459970:intron 35.0%
AAGTAAGGCACAGTGTTTAA+CGG + chr3_3:56961690-56961709 None:intergenic 35.0%
!! CAAGTAAAACGAGGTATTGA+TGG + chr3_3:56961884-56961903 None:intergenic 35.0%
CAACTTGAACAAGTAAAACG+AGG + chr3_3:56961893-56961912 None:intergenic 35.0%
TTCACCATTATTGACAATGG+TGG - chr3_3:56962065-56962084 Msa0459970:intron 35.0%
AACATACTTCCTAATTGCAC+TGG + chr3_3:56962225-56962244 None:intergenic 35.0%
ATGATCACTCTTGCAAAAGA+TGG - chr3_3:56962251-56962270 Msa0459970:intron 35.0%
!! TGTTCATGCTTTATTTGCAG+AGG - chr3_3:56962325-56962344 Msa0459970:intron 35.0%
GAATTATAAGAACCCTACCA+AGG - chr3_3:56962387-56962406 Msa0459970:CDS 35.0%
ACAAGTTCAATGTATGCCAT+AGG + chr3_3:56962428-56962447 None:intergenic 35.0%
GCTAATAATTGCATCCCATA+AGG + chr3_3:56962469-56962488 None:intergenic 35.0%
TTAGACTCAACTGTTACAGT+TGG + chr3_3:56962525-56962544 None:intergenic 35.0%
GAGAGAGTAAGATAGAGTAG+CGG + chr3_3:56960742-56960761 None:intergenic 40.0%
AGTAGGAGGAATTGAAGGTA+AGG + chr3_3:56960939-56960958 None:intergenic 40.0%
! AAGGAAGGTATACCTGATGA+AGG + chr3_3:56961079-56961098 None:intergenic 40.0%
GTAAAGAGTCGTGAATGCAA+TGG + chr3_3:56961108-56961127 None:intergenic 40.0%
! TATCTCTGTACCGACACATA+TGG - chr3_3:56961257-56961276 Msa0459970:CDS 40.0%
GAATCATCTTTGCACTCTTC+TGG - chr3_3:56961602-56961621 Msa0459970:intron 40.0%
AGAACTTTCTGCTACTGCAA+CGG - chr3_3:56961806-56961825 Msa0459970:intron 40.0%
!! CAGATCAAAGGTGTTCTCAT+AGG - chr3_3:56961829-56961848 Msa0459970:intron 40.0%
CCATTATTGACAATGGTGGT+CGG - chr3_3:56962069-56962088 Msa0459970:intron 40.0%
CATTATTGACAATGGTGGTC+GGG - chr3_3:56962070-56962089 Msa0459970:intron 40.0%
TCTATGCTATGAGACATGGA+AGG - chr3_3:56962093-56962112 Msa0459970:intron 40.0%
! ATTTAAGGAGCTGTGTCGTT+AGG + chr3_3:56962172-56962191 None:intergenic 40.0%
ACGACACAGCTCCTTAAATA+TGG - chr3_3:56962173-56962192 Msa0459970:intron 40.0%
TCTTGATGCGGCCATATTTA+AGG + chr3_3:56962187-56962206 None:intergenic 40.0%
CATAAAAGGAGACAAGCTCT+TGG - chr3_3:56962281-56962300 Msa0459970:intron 40.0%
TTTCTTTCGCCATAACGTTC+TGG + chr3_3:56962353-56962372 None:intergenic 40.0%
GAACGTTATGGCGAAAGAAA+TGG - chr3_3:56962353-56962372 Msa0459970:intron 40.0%
TTATAAGAACCCTACCAAGG+CGG - chr3_3:56962390-56962409 Msa0459970:CDS 40.0%
ATAATTGCATCCCATAAGGG+CGG + chr3_3:56962465-56962484 None:intergenic 40.0%
GAGAGAGTAAGATAGAGTAG+CGG + chr3_3:56960742-56960761 None:intergenic 40.0%
AGTAGGAGGAATTGAAGGTA+AGG + chr3_3:56960939-56960958 None:intergenic 40.0%
! AAGGAAGGTATACCTGATGA+AGG + chr3_3:56961079-56961098 None:intergenic 40.0%
GTAAAGAGTCGTGAATGCAA+TGG + chr3_3:56961108-56961127 None:intergenic 40.0%
! TATCTCTGTACCGACACATA+TGG - chr3_3:56961257-56961276 Msa0459970:CDS 40.0%
GAATCATCTTTGCACTCTTC+TGG - chr3_3:56961602-56961621 Msa0459970:intron 40.0%
AGAACTTTCTGCTACTGCAA+CGG - chr3_3:56961806-56961825 Msa0459970:intron 40.0%
!! CAGATCAAAGGTGTTCTCAT+AGG - chr3_3:56961829-56961848 Msa0459970:intron 40.0%
CCATTATTGACAATGGTGGT+CGG - chr3_3:56962069-56962088 Msa0459970:intron 40.0%
CATTATTGACAATGGTGGTC+GGG - chr3_3:56962070-56962089 Msa0459970:intron 40.0%
TCTATGCTATGAGACATGGA+AGG - chr3_3:56962093-56962112 Msa0459970:intron 40.0%
! ATTTAAGGAGCTGTGTCGTT+AGG + chr3_3:56962172-56962191 None:intergenic 40.0%
ACGACACAGCTCCTTAAATA+TGG - chr3_3:56962173-56962192 Msa0459970:intron 40.0%
TCTTGATGCGGCCATATTTA+AGG + chr3_3:56962187-56962206 None:intergenic 40.0%
CATAAAAGGAGACAAGCTCT+TGG - chr3_3:56962281-56962300 Msa0459970:intron 40.0%
TTTCTTTCGCCATAACGTTC+TGG + chr3_3:56962353-56962372 None:intergenic 40.0%
GAACGTTATGGCGAAAGAAA+TGG - chr3_3:56962353-56962372 Msa0459970:intron 40.0%
TTATAAGAACCCTACCAAGG+CGG - chr3_3:56962390-56962409 Msa0459970:CDS 40.0%
ATAATTGCATCCCATAAGGG+CGG + chr3_3:56962465-56962484 None:intergenic 40.0%
AGTAGCGGCAATTCTACACT+GGG + chr3_3:56960727-56960746 None:intergenic 45.0%
! ATTGTTGCTGCTTGAAGGAG+AGG + chr3_3:56960836-56960855 None:intergenic 45.0%
TCTCCTTCAAGCAGCAACAA+TGG - chr3_3:56960835-56960854 Msa0459970:three_prime_UTR 45.0%
AATGAAGAAGCGGAAGTAGG+AGG + chr3_3:56960953-56960972 None:intergenic 45.0%
AGTGAAGCGCAATGAAGAAG+CGG + chr3_3:56960963-56960982 None:intergenic 45.0%
!! CTGGAAATTCGGAGTGTTGT+TGG + chr3_3:56960995-56961014 None:intergenic 45.0%
AAAGAGGGAAGTAGGGATTG+GGG + chr3_3:56961025-56961044 None:intergenic 45.0%
GAAAGAGGGAAGTAGGGATT+GGG + chr3_3:56961026-56961045 None:intergenic 45.0%
TGAAAGAGGGAAGTAGGGAT+TGG + chr3_3:56961027-56961046 None:intergenic 45.0%
CTGATGAAGGAGCGAAGATT+GGG + chr3_3:56961066-56961085 None:intergenic 45.0%
TCTATGGCGAGGACAAATTC+AGG + chr3_3:56961445-56961464 None:intergenic 45.0%
TCCTCTGGACTGAACATCTA+TGG + chr3_3:56961461-56961480 None:intergenic 45.0%
! TCTCATTTTCCTGCACCTCT+TGG - chr3_3:56961629-56961648 Msa0459970:intron 45.0%
CCGACCACCATTGTCAATAA+TGG + chr3_3:56962072-56962091 None:intergenic 45.0%
CGTTATGGCGAAAGAAATGG+TGG - chr3_3:56962356-56962375 Msa0459970:intron 45.0%
TATAAGAACCCTACCAAGGC+GGG - chr3_3:56962391-56962410 Msa0459970:CDS 45.0%
TTCTTGGCTACCAAGAACTC+AGG - chr3_3:56962677-56962696 Msa0459970:five_prime_UTR 45.0%
TAAGCAGAAGCCTGAGTTCT+TGG + chr3_3:56962690-56962709 None:intergenic 45.0%
AGTAGCGGCAATTCTACACT+GGG + chr3_3:56960727-56960746 None:intergenic 45.0%
! ATTGTTGCTGCTTGAAGGAG+AGG + chr3_3:56960836-56960855 None:intergenic 45.0%
TCTCCTTCAAGCAGCAACAA+TGG - chr3_3:56960835-56960854 Msa0459970:three_prime_UTR 45.0%
AATGAAGAAGCGGAAGTAGG+AGG + chr3_3:56960953-56960972 None:intergenic 45.0%
AGTGAAGCGCAATGAAGAAG+CGG + chr3_3:56960963-56960982 None:intergenic 45.0%
!! CTGGAAATTCGGAGTGTTGT+TGG + chr3_3:56960995-56961014 None:intergenic 45.0%
AAAGAGGGAAGTAGGGATTG+GGG + chr3_3:56961025-56961044 None:intergenic 45.0%
GAAAGAGGGAAGTAGGGATT+GGG + chr3_3:56961026-56961045 None:intergenic 45.0%
TGAAAGAGGGAAGTAGGGAT+TGG + chr3_3:56961027-56961046 None:intergenic 45.0%
CTGATGAAGGAGCGAAGATT+GGG + chr3_3:56961066-56961085 None:intergenic 45.0%
TCTATGGCGAGGACAAATTC+AGG + chr3_3:56961445-56961464 None:intergenic 45.0%
TCCTCTGGACTGAACATCTA+TGG + chr3_3:56961461-56961480 None:intergenic 45.0%
! TCTCATTTTCCTGCACCTCT+TGG - chr3_3:56961629-56961648 Msa0459970:intron 45.0%
CCGACCACCATTGTCAATAA+TGG + chr3_3:56962072-56962091 None:intergenic 45.0%
CGTTATGGCGAAAGAAATGG+TGG - chr3_3:56962356-56962375 Msa0459970:intron 45.0%
TATAAGAACCCTACCAAGGC+GGG - chr3_3:56962391-56962410 Msa0459970:CDS 45.0%
TTCTTGGCTACCAAGAACTC+AGG - chr3_3:56962677-56962696 Msa0459970:five_prime_UTR 45.0%
TAAGCAGAAGCCTGAGTTCT+TGG + chr3_3:56962690-56962709 None:intergenic 45.0%
GAGTAGCGGCAATTCTACAC+TGG + chr3_3:56960728-56960747 None:intergenic 50.0%
! TCGCCATTGTTGCTGCTTGA+AGG + chr3_3:56960841-56960860 None:intergenic 50.0%
AATGGCGAACGTGGCAGTTA+TGG - chr3_3:56960853-56960872 Msa0459970:three_prime_UTR 50.0%
AGACATGCTCCATCTGCTAG+TGG + chr3_3:56960903-56960922 None:intergenic 50.0%
GCGGAAGTAGGAGGAATTGA+AGG + chr3_3:56960944-56960963 None:intergenic 50.0%
CGCAATGAAGAAGCGGAAGT+AGG + chr3_3:56960956-56960975 None:intergenic 50.0%
GGGGTTTGGGTCTGGAAATT+CGG + chr3_3:56961006-56961025 None:intergenic 50.0%
GGAAGTAGGGATTGGGGTTT+GGG + chr3_3:56961019-56961038 None:intergenic 50.0%
TCCCTACTTCCCTCTTTCAC+CGG - chr3_3:56961028-56961047 Msa0459970:CDS 50.0%
TCCGGTGAAAGAGGGAAGTA+GGG + chr3_3:56961032-56961051 None:intergenic 50.0%
AAGGAGCGAAGATTGGGAGA+GGG + chr3_3:56961060-56961079 None:intergenic 50.0%
CCTGATGAAGGAGCGAAGAT+TGG + chr3_3:56961067-56961086 None:intergenic 50.0%
CCAATCTTCGCTCCTTCATC+AGG - chr3_3:56961064-56961083 Msa0459970:CDS 50.0%
ATGGCGAGGACAAATTCAGG+TGG + chr3_3:56961442-56961461 None:intergenic 50.0%
TGGACTGAACATCTATGGCG+AGG + chr3_3:56961456-56961475 None:intergenic 50.0%
GCCATAGATGTTCAGTCCAG+AGG - chr3_3:56961457-56961476 Msa0459970:intron 50.0%
AAACACATCCACTCGTCCTC+TGG + chr3_3:56961476-56961495 None:intergenic 50.0%
TGTGCCTTACTTCCCTAACC+CGG - chr3_3:56961698-56961717 Msa0459970:intron 50.0%
TTCAGTGGACGAGAAGCAAC+CGG + chr3_3:56961720-56961739 None:intergenic 50.0%
CTACTGCAACGGCAGATCAA+AGG - chr3_3:56961817-56961836 Msa0459970:intron 50.0%
CGGGTCTATGCTATGAGACA+TGG - chr3_3:56962089-56962108 Msa0459970:intron 50.0%
!! GGAAAGTGCCGAAACTCAAC+AGG - chr3_3:56962114-56962133 Msa0459970:intron 50.0%
TGAGTGCCTTACGCTGATCT+GGG + chr3_3:56962142-56962161 None:intergenic 50.0%
ATGAGTGCCTTACGCTGATC+TGG + chr3_3:56962143-56962162 None:intergenic 50.0%
GCAGAGGTTCCAGAACGTTA+TGG - chr3_3:56962341-56962360 Msa0459970:intron 50.0%
ATAAGAACCCTACCAAGGCG+GGG - chr3_3:56962392-56962411 Msa0459970:CDS 50.0%
ATTATCACCCCGCCTTGGTA+GGG + chr3_3:56962402-56962421 None:intergenic 50.0%
ATTATTAGCGGCCGCCCTTA+TGG - chr3_3:56962451-56962470 Msa0459970:CDS 50.0%
TTATTAGCGGCCGCCCTTAT+GGG - chr3_3:56962452-56962471 Msa0459970:CDS 50.0%
GAGTAGCGGCAATTCTACAC+TGG + chr3_3:56960728-56960747 None:intergenic 50.0%
! TCGCCATTGTTGCTGCTTGA+AGG + chr3_3:56960841-56960860 None:intergenic 50.0%
AATGGCGAACGTGGCAGTTA+TGG - chr3_3:56960853-56960872 Msa0459970:three_prime_UTR 50.0%
AGACATGCTCCATCTGCTAG+TGG + chr3_3:56960903-56960922 None:intergenic 50.0%
GCGGAAGTAGGAGGAATTGA+AGG + chr3_3:56960944-56960963 None:intergenic 50.0%
CGCAATGAAGAAGCGGAAGT+AGG + chr3_3:56960956-56960975 None:intergenic 50.0%
GGGGTTTGGGTCTGGAAATT+CGG + chr3_3:56961006-56961025 None:intergenic 50.0%
GGAAGTAGGGATTGGGGTTT+GGG + chr3_3:56961019-56961038 None:intergenic 50.0%
TCCCTACTTCCCTCTTTCAC+CGG - chr3_3:56961028-56961047 Msa0459970:CDS 50.0%
TCCGGTGAAAGAGGGAAGTA+GGG + chr3_3:56961032-56961051 None:intergenic 50.0%
AAGGAGCGAAGATTGGGAGA+GGG + chr3_3:56961060-56961079 None:intergenic 50.0%
CCTGATGAAGGAGCGAAGAT+TGG + chr3_3:56961067-56961086 None:intergenic 50.0%
CCAATCTTCGCTCCTTCATC+AGG - chr3_3:56961064-56961083 Msa0459970:CDS 50.0%
ATGGCGAGGACAAATTCAGG+TGG + chr3_3:56961442-56961461 None:intergenic 50.0%
TGGACTGAACATCTATGGCG+AGG + chr3_3:56961456-56961475 None:intergenic 50.0%
GCCATAGATGTTCAGTCCAG+AGG - chr3_3:56961457-56961476 Msa0459970:intron 50.0%
AAACACATCCACTCGTCCTC+TGG + chr3_3:56961476-56961495 None:intergenic 50.0%
TGTGCCTTACTTCCCTAACC+CGG - chr3_3:56961698-56961717 Msa0459970:intron 50.0%
TTCAGTGGACGAGAAGCAAC+CGG + chr3_3:56961720-56961739 None:intergenic 50.0%
CTACTGCAACGGCAGATCAA+AGG - chr3_3:56961817-56961836 Msa0459970:intron 50.0%
CGGGTCTATGCTATGAGACA+TGG - chr3_3:56962089-56962108 Msa0459970:intron 50.0%
!! GGAAAGTGCCGAAACTCAAC+AGG - chr3_3:56962114-56962133 Msa0459970:intron 50.0%
TGAGTGCCTTACGCTGATCT+GGG + chr3_3:56962142-56962161 None:intergenic 50.0%
ATGAGTGCCTTACGCTGATC+TGG + chr3_3:56962143-56962162 None:intergenic 50.0%
GCAGAGGTTCCAGAACGTTA+TGG - chr3_3:56962341-56962360 Msa0459970:intron 50.0%
ATAAGAACCCTACCAAGGCG+GGG - chr3_3:56962392-56962411 Msa0459970:CDS 50.0%
ATTATCACCCCGCCTTGGTA+GGG + chr3_3:56962402-56962421 None:intergenic 50.0%
ATTATTAGCGGCCGCCCTTA+TGG - chr3_3:56962451-56962470 Msa0459970:CDS 50.0%
TTATTAGCGGCCGCCCTTAT+GGG - chr3_3:56962452-56962471 Msa0459970:CDS 50.0%
GCGGCAATTCTACACTGGGA+GGG + chr3_3:56960723-56960742 None:intergenic 55.0%
AGCGGCAATTCTACACTGGG+AGG + chr3_3:56960724-56960743 None:intergenic 55.0%
GCTGCTTGAAGGAGAGGAAC+TGG + chr3_3:56960830-56960849 None:intergenic 55.0%
AGCAGCAACAATGGCGAACG+TGG - chr3_3:56960844-56960863 Msa0459970:three_prime_UTR 55.0%
!! AGTGGTGGTGGAGTTGTTGG+TGG + chr3_3:56960885-56960904 None:intergenic 55.0%
!! GCTAGTGGTGGTGGAGTTGT+TGG + chr3_3:56960888-56960907 None:intergenic 55.0%
ACTCCACCACCACTAGCAGA+TGG - chr3_3:56960891-56960910 Msa0459970:three_prime_UTR 55.0%
CATGCTCCATCTGCTAGTGG+TGG + chr3_3:56960900-56960919 None:intergenic 55.0%
TAGGGATTGGGGTTTGGGTC+TGG + chr3_3:56961014-56961033 None:intergenic 55.0%
GGGAAGTAGGGATTGGGGTT+TGG + chr3_3:56961020-56961039 None:intergenic 55.0%
GTCCGGTGAAAGAGGGAAGT+AGG + chr3_3:56961033-56961052 None:intergenic 55.0%
GAAGGAGCGAAGATTGGGAG+AGG + chr3_3:56961061-56961080 None:intergenic 55.0%
TGTTCAGTCCAGAGGACGAG+TGG - chr3_3:56961465-56961484 Msa0459970:intron 55.0%
TCCTGCACCTCTTGGATTCC+TGG - chr3_3:56961637-56961656 Msa0459970:intron 55.0%
! ACCAGGAATCCAAGAGGTGC+AGG + chr3_3:56961641-56961660 None:intergenic 55.0%
! GCAACCGGGTTAGGGAAGTA+AGG + chr3_3:56961705-56961724 None:intergenic 55.0%
GACGAGAAGCAACCGGGTTA+GGG + chr3_3:56961713-56961732 None:intergenic 55.0%
TCAGTGGACGAGAAGCAACC+GGG + chr3_3:56961719-56961738 None:intergenic 55.0%
TCTGGGGGCCTGTTGAGTTT+CGG + chr3_3:56962125-56962144 None:intergenic 55.0%
AGTGCCTTACGCTGATCTGG+GGG + chr3_3:56962140-56962159 None:intergenic 55.0%
GAGTGCCTTACGCTGATCTG+GGG + chr3_3:56962141-56962160 None:intergenic 55.0%
! TTGCCCTGGTGGTCTTGATG+CGG + chr3_3:56962199-56962218 None:intergenic 55.0%
!! AATTGCACTGGCTCTTGCCC+TGG + chr3_3:56962213-56962232 None:intergenic 55.0%
GGGCAAGAGCCAGTGCAATT+AGG - chr3_3:56962213-56962232 Msa0459970:intron 55.0%
CATTATCACCCCGCCTTGGT+AGG + chr3_3:56962403-56962422 None:intergenic 55.0%
! GCGGGGTGATAATGCACCTA+TGG - chr3_3:56962409-56962428 Msa0459970:CDS 55.0%
GCGGCAATTCTACACTGGGA+GGG + chr3_3:56960723-56960742 None:intergenic 55.0%
AGCGGCAATTCTACACTGGG+AGG + chr3_3:56960724-56960743 None:intergenic 55.0%
GCTGCTTGAAGGAGAGGAAC+TGG + chr3_3:56960830-56960849 None:intergenic 55.0%
AGCAGCAACAATGGCGAACG+TGG - chr3_3:56960844-56960863 Msa0459970:three_prime_UTR 55.0%
!! AGTGGTGGTGGAGTTGTTGG+TGG + chr3_3:56960885-56960904 None:intergenic 55.0%
!! GCTAGTGGTGGTGGAGTTGT+TGG + chr3_3:56960888-56960907 None:intergenic 55.0%
ACTCCACCACCACTAGCAGA+TGG - chr3_3:56960891-56960910 Msa0459970:three_prime_UTR 55.0%
CATGCTCCATCTGCTAGTGG+TGG + chr3_3:56960900-56960919 None:intergenic 55.0%
TAGGGATTGGGGTTTGGGTC+TGG + chr3_3:56961014-56961033 None:intergenic 55.0%
GGGAAGTAGGGATTGGGGTT+TGG + chr3_3:56961020-56961039 None:intergenic 55.0%
GTCCGGTGAAAGAGGGAAGT+AGG + chr3_3:56961033-56961052 None:intergenic 55.0%
GAAGGAGCGAAGATTGGGAG+AGG + chr3_3:56961061-56961080 None:intergenic 55.0%
TGTTCAGTCCAGAGGACGAG+TGG - chr3_3:56961465-56961484 Msa0459970:intron 55.0%
TCCTGCACCTCTTGGATTCC+TGG - chr3_3:56961637-56961656 Msa0459970:intron 55.0%
! ACCAGGAATCCAAGAGGTGC+AGG + chr3_3:56961641-56961660 None:intergenic 55.0%
! GCAACCGGGTTAGGGAAGTA+AGG + chr3_3:56961705-56961724 None:intergenic 55.0%
GACGAGAAGCAACCGGGTTA+GGG + chr3_3:56961713-56961732 None:intergenic 55.0%
TCAGTGGACGAGAAGCAACC+GGG + chr3_3:56961719-56961738 None:intergenic 55.0%
TCTGGGGGCCTGTTGAGTTT+CGG + chr3_3:56962125-56962144 None:intergenic 55.0%
AGTGCCTTACGCTGATCTGG+GGG + chr3_3:56962140-56962159 None:intergenic 55.0%
GAGTGCCTTACGCTGATCTG+GGG + chr3_3:56962141-56962160 None:intergenic 55.0%
! TTGCCCTGGTGGTCTTGATG+CGG + chr3_3:56962199-56962218 None:intergenic 55.0%
!! AATTGCACTGGCTCTTGCCC+TGG + chr3_3:56962213-56962232 None:intergenic 55.0%
GGGCAAGAGCCAGTGCAATT+AGG - chr3_3:56962213-56962232 Msa0459970:intron 55.0%
CATTATCACCCCGCCTTGGT+AGG + chr3_3:56962403-56962422 None:intergenic 55.0%
! GCGGGGTGATAATGCACCTA+TGG - chr3_3:56962409-56962428 Msa0459970:CDS 55.0%
!! GGTGGTGGAGTTGTTGGTGG+TGG + chr3_3:56960882-56960901 None:intergenic 60.0%
GCTCCATCTGCTAGTGGTGG+TGG + chr3_3:56960897-56960916 None:intergenic 60.0%
GGGCGAAGTCCGGTGAAAGA+GGG + chr3_3:56961040-56961059 None:intergenic 60.0%
AGGGCGAAGTCCGGTGAAAG+AGG + chr3_3:56961041-56961060 None:intergenic 60.0%
GATTGGGAGAGGGCGAAGTC+CGG + chr3_3:56961050-56961069 None:intergenic 60.0%
GGACGAGAAGCAACCGGGTT+AGG + chr3_3:56961714-56961733 None:intergenic 60.0%
! CAGCGTAAGGCACTCATCCG+TGG - chr3_3:56962146-56962165 Msa0459970:intron 60.0%
! GGAGCTGTGTCGTTAGGCCA+CGG + chr3_3:56962166-56962185 None:intergenic 60.0%
ATGGCCGCATCAAGACCACC+AGG - chr3_3:56962192-56962211 Msa0459970:intron 60.0%
TGGCCGCATCAAGACCACCA+GGG - chr3_3:56962193-56962212 Msa0459970:intron 60.0%
GGTGCATTATCACCCCGCCT+TGG + chr3_3:56962407-56962426 None:intergenic 60.0%
!! GGTGGTGGAGTTGTTGGTGG+TGG + chr3_3:56960882-56960901 None:intergenic 60.0%
GCTCCATCTGCTAGTGGTGG+TGG + chr3_3:56960897-56960916 None:intergenic 60.0%
GGGCGAAGTCCGGTGAAAGA+GGG + chr3_3:56961040-56961059 None:intergenic 60.0%
AGGGCGAAGTCCGGTGAAAG+AGG + chr3_3:56961041-56961060 None:intergenic 60.0%
GATTGGGAGAGGGCGAAGTC+CGG + chr3_3:56961050-56961069 None:intergenic 60.0%
GGACGAGAAGCAACCGGGTT+AGG + chr3_3:56961714-56961733 None:intergenic 60.0%
! CAGCGTAAGGCACTCATCCG+TGG - chr3_3:56962146-56962165 Msa0459970:intron 60.0%
! GGAGCTGTGTCGTTAGGCCA+CGG + chr3_3:56962166-56962185 None:intergenic 60.0%
ATGGCCGCATCAAGACCACC+AGG - chr3_3:56962192-56962211 Msa0459970:intron 60.0%
TGGCCGCATCAAGACCACCA+GGG - chr3_3:56962193-56962212 Msa0459970:intron 60.0%
GGTGCATTATCACCCCGCCT+TGG + chr3_3:56962407-56962426 None:intergenic 60.0%
CAGGCCCCCAGATCAGCGTA+AGG - chr3_3:56962133-56962152 Msa0459970:intron 65.0%
!! TGCACTGGCTCTTGCCCTGG+TGG + chr3_3:56962210-56962229 None:intergenic 65.0%
CAGGCCCCCAGATCAGCGTA+AGG - chr3_3:56962133-56962152 Msa0459970:intron 65.0%
!! TGCACTGGCTCTTGCCCTGG+TGG + chr3_3:56962210-56962229 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 56960695 56962752 56960695 ID=Msa0459970;Name=Msa0459970
chr3_3 mRNA 56960695 56962752 56960695 ID=Msa0459970-mRNA-1;Parent=Msa0459970;Name=Msa0459970-mRNA-1;_AED=0.06;_eAED=0.06;_QI=159|1|1|1|1|1|2|301|210
chr3_3 exon 56960695 56961396 56960695 ID=Msa0459970-mRNA-1:exon:11490;Parent=Msa0459970-mRNA-1
chr3_3 exon 56962362 56962752 56962362 ID=Msa0459970-mRNA-1:exon:11489;Parent=Msa0459970-mRNA-1
chr3_3 five_prime_UTR 56962594 56962752 56962594 ID=Msa0459970-mRNA-1:five_prime_utr;Parent=Msa0459970-mRNA-1
chr3_3 CDS 56962362 56962593 56962362 ID=Msa0459970-mRNA-1:cds;Parent=Msa0459970-mRNA-1
chr3_3 CDS 56960996 56961396 56960996 ID=Msa0459970-mRNA-1:cds;Parent=Msa0459970-mRNA-1
chr3_3 three_prime_UTR 56960695 56960995 56960695 ID=Msa0459970-mRNA-1:three_prime_utr;Parent=Msa0459970-mRNA-1
Gene Sequence

>Msa0459970

ATGGCGAACGTGGCAGTTATGGCTACCACCACCAACAACTCCACCACCACTAGCAGATGGAGCATGTCTTCTCTTCGCTCTGCCTTACCTTCAATTCCTCCTACTTCCGCTTCTTCATTGCGCTTCACTCGTTCTTCTCCAACAACACTCCGAATTTCCAGACCCAAACCCCAATCCCTACTTCCCTCTTTCACCGGACTTCGCCCTCTCCCAATCTTCGCTCCTTCATCAGAATTTGATCACAGTTTCACCATTATTGACAATGGTGGTCGGGTCTATGCTATGAGACATGGAAGGAAAGTGCCGAAACTCAACAGGCCCCCAGATCAGCGTAAGGCACTCATCCGTGGCCTAACGACACAGCTCCTTAAATATGGCCGCATCAAGACCACCAGGGCAAGAGCCAGTGCAATTAGGAAGTATGTTGATAAAATGATCACTCTTGCAAAAGATGGTTCTCTACATAAAAGGAGACAAGCTCTTGGCTTCATCTATGAGAAGCAGATTGTTCATGCTTTATTTGCAGAGGTTCCAGAACGTTATGGCGAAAGAAATGGTGGTTATACAAGAATTATAAGAACCCTACCAAGGCGGGGTGATAATGCACCTATGGCATACATTGAACTTGTGTAA

Protein sequence

>Msa0459970

MANVAVMATTTNNSTTTSRWSMSSLRSALPSIPPTSASSLRFTRSSPTTLRISRPKPQSLLPSFTGLRPLPIFAPSSEFDHSFTIIDNGGRVYAMRHGRKVPKLNRPPDQRKALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV*