AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254990 MtrunA17_Chr8g0372901 92.791 430 17 1 1 430 1 416 0.0 797
Msa1254990 MtrunA17_Chr6g0459721 24.834 302 205 5 115 408 128 415 8.43e-21 94.0
Msa1254990 MtrunA17_Chr5g0404241 24.834 302 205 5 115 408 134 421 8.59e-21 94.0
Msa1254990 MtrunA17_Chr1g0161851 22.302 278 194 5 139 408 99 362 2.78e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254990 AT5G66470.2 67.758 397 102 4 39 427 46 424 0.0 560
Msa1254990 AT5G66470.1 67.758 397 102 4 39 427 46 424 0.0 560
Msa1254990 AT1G30960.1 25.987 304 199 6 115 408 150 437 2.97e-22 99.0
Msa1254990 AT3G12080.1 24.390 246 139 4 69 285 123 350 1.61e-11 66.6
Msa1254990 AT3G12080.2 24.390 246 139 4 69 285 123 350 1.85e-11 66.6

Find 108 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGCAGAAAATTATCATTAT+TGG 0.131215 8_2:-53361773 Msa1254990:CDS
CATGAAGCCTGACCGGAATT+TGG 0.191625 8_2:-53365605 Msa1254990:CDS
CTGTAACTATTGACAACTTT+TGG 0.219844 8_2:+53364212 None:intergenic
AAGTAAAGGTTAAAGAAAAT+TGG 0.277803 8_2:-53361351 Msa1254990:CDS
ACACCAAACTGTCTCGAGTA+TGG 0.280705 8_2:-53361056 Msa1254990:three_prime_UTR
TTTCTTAAGCACTCTGGTTA+TGG 0.300154 8_2:-53361313 Msa1254990:CDS
ATGTTCTGGCTCAGATTATC+AGG 0.305498 8_2:-53364152 Msa1254990:intron
CGAGTTCTTTGTATATGTTC+TGG 0.312570 8_2:-53364166 Msa1254990:CDS
TGACCATACTTGGCACTAAC+TGG 0.325853 8_2:+53363116 None:intergenic
TGTATAAAATCTTTAGCATT+TGG 0.328995 8_2:+53361821 None:intergenic
TCTGGTTATGGAGGTCAAAT+AGG 0.330866 8_2:-53361301 Msa1254990:CDS
AGTGTACTCTTCCCAACATT+TGG 0.337378 8_2:+53364253 None:intergenic
TGCTTTGGAGGGAGAGTGTT+TGG 0.347383 8_2:+53365720 None:intergenic
ATGAAGCCTGACCGGAATTT+GGG 0.351500 8_2:-53365604 Msa1254990:CDS
GGTGAATGTTATAAGCTATA+AGG 0.364966 8_2:-53361849 Msa1254990:CDS
ATTCCAGTTAGTGCCAAGTA+TGG 0.379883 8_2:-53363119 Msa1254990:CDS
TTTGACTTTAAACATGCCTT+TGG 0.390366 8_2:+53363032 None:intergenic
TTGTTTGGTTGAGAATGCTT+TGG 0.401276 8_2:+53365705 None:intergenic
GCAGGATATGTGGCTTTACT+TGG 0.408671 8_2:-53364280 Msa1254990:intron
ACTCGATGCCTTGTTGTTTG+AGG 0.409336 8_2:+53364184 None:intergenic
TTTATCTTTGTGGCCTCCTA+TGG 0.409845 8_2:+53363322 None:intergenic
TTGATTCGGTTCGGTTATGA+AGG 0.420455 8_2:+53365764 None:intergenic
TTAATTTATCTTTAAGCCAT+TGG 0.423398 8_2:-53360837 Msa1254990:three_prime_UTR
AACCCATACTCGAGACAGTT+TGG 0.426168 8_2:+53361053 None:intergenic
CAACACTCTTTCTTCGCCGT+TGG 0.428469 8_2:-53365808 Msa1254990:CDS
TTCAACCCCATGACCATACT+TGG 0.443016 8_2:+53363106 None:intergenic
GGTTATGAAGGAAAGTGGTT+GGG 0.444894 8_2:+53365776 None:intergenic
CTTTGAACAGATTAAAGTAA+AGG 0.451174 8_2:-53361365 Msa1254990:intron
GGATAATAAGCTGGTCCGTT+AGG 0.454230 8_2:+53363053 None:intergenic
CTTGTTCATAATCAATAAAG+TGG 0.455540 8_2:+53363295 None:intergenic
ACAGAGATGTGGCGTTGATT+CGG 0.456098 8_2:+53365750 None:intergenic
CGGTTATGAAGGAAAGTGGT+TGG 0.457398 8_2:+53365775 None:intergenic
TTACTTGGTAAACCAAATGT+TGG 0.457541 8_2:-53364265 Msa1254990:CDS
TGAAATCCCCTATGTGTGTC+AGG 0.460264 8_2:-53362063 Msa1254990:intron
TACTTGGTAAACCAAATGTT+GGG 0.461455 8_2:-53364264 Msa1254990:CDS
AGTTTCTTTGCAACTTCACC+AGG 0.463325 8_2:+53363257 None:intergenic
TCTTGTTAATGCTCTACAAC+AGG 0.463625 8_2:-53361097 Msa1254990:three_prime_UTR
CATCGAGCAAGCCCAAATTC+CGG 0.473114 8_2:+53365593 None:intergenic
CCCTCAGCATGAAGCCTGAC+CGG 0.475637 8_2:-53365612 Msa1254990:CDS
ACTGTATTCTACCATGCTGT+GGG 0.480633 8_2:+53360894 None:intergenic
TGGAGGGAGAGTGTTTGGTT+CGG 0.483158 8_2:+53365725 None:intergenic
GGGTTGAAGATGTCAAGAAC+TGG 0.484499 8_2:-53363091 Msa1254990:CDS
CACTGTATTCTACCATGCTG+TGG 0.491981 8_2:+53360893 None:intergenic
TTTGGTTGAGAATGCTTTGG+AGG 0.498837 8_2:+53365708 None:intergenic
TTCACGTATAGTGGTGGTCA+TGG 0.502782 8_2:-53360984 Msa1254990:three_prime_UTR
AGCAAGCCCAAATTCCGGTC+AGG 0.504429 8_2:+53365598 None:intergenic
GTTATGAAGGAAAGTGGTTG+GGG 0.509349 8_2:+53365777 None:intergenic
TTTATTGATTATGAACAAGA+AGG 0.513200 8_2:-53363291 Msa1254990:CDS
GAGTGTTGAATTTGAAATGT+GGG 0.513216 8_2:+53365823 None:intergenic
GAGTACACTGGCAAACCAAA+TGG 0.515192 8_2:-53364239 Msa1254990:CDS
TCTTTAGATTGATGAAGTGT+TGG 0.515468 8_2:-53363351 Msa1254990:intron
ATGACTACCTGACACACATA+GGG 0.516207 8_2:+53362056 None:intergenic
AAGGTGAAGGTGCACGAAGA+AGG 0.520325 8_2:+53365863 None:intergenic
CCTTTGTTCTTGTAGAACAC+CGG 0.522067 8_2:+53363534 None:intergenic
GTTAGTGCCAAGTATGGTCA+TGG 0.523721 8_2:-53363113 Msa1254990:CDS
GATGTGGCGTTGATTCGGTT+CGG 0.525956 8_2:+53365755 None:intergenic
CACCAAACTGTCTCGAGTAT+GGG 0.533113 8_2:-53361055 Msa1254990:three_prime_UTR
AATGACTACCTGACACACAT+AGG 0.533812 8_2:+53362055 None:intergenic
CATGCCTTTGGATAATAAGC+TGG 0.534355 8_2:+53363044 None:intergenic
CTTCATGCTGAGGGATAAGA+AGG 0.536945 8_2:+53365621 None:intergenic
CTTAAGCACTCTGGTTATGG+AGG 0.541168 8_2:-53361310 Msa1254990:CDS
AGTTAATGCTGATTGTGTGT+TGG 0.541523 8_2:-53363467 Msa1254990:CDS
TCCGGTCAGGCTTCATGCTG+AGG 0.549687 8_2:+53365611 None:intergenic
AGAGTTGAAGTTGAAGGTGA+AGG 0.552847 8_2:+53365850 None:intergenic
CTTTGTTCTTGTAGAACACC+GGG 0.555225 8_2:+53363535 None:intergenic
AAAATTTACTGATGTTGATG+AGG 0.555551 8_2:-53363144 Msa1254990:CDS
GAAGAACTCGGTTATGATTG+TGG 0.559857 8_2:-53365559 Msa1254990:CDS
GGTTCGGTTATGAAGGAAAG+TGG 0.560699 8_2:+53365771 None:intergenic
TTGTTCATAATCAATAAAGT+GGG 0.565630 8_2:+53363296 None:intergenic
GGAGGAAGAGTTGAAGTTGA+AGG 0.570351 8_2:+53365844 None:intergenic
TTGTATGATGAGCACGGTGA+GGG 0.575254 8_2:-53361276 Msa1254990:exon
ATGAAGGAAAGTGGTTGGGG+TGG 0.576260 8_2:+53365780 None:intergenic
AAGAAGGATCTTATCAAACC+TGG 0.576675 8_2:-53363275 Msa1254990:CDS
TTGGTTGAGAATGCTTTGGA+GGG 0.578280 8_2:+53365709 None:intergenic
GTTCATAATCAATAAAGTGG+GGG 0.579333 8_2:+53363298 None:intergenic
TACATAATATGATACAAGAC+TGG 0.579739 8_2:+53361246 None:intergenic
TTCATAATCAATAAAGTGGG+GGG 0.583791 8_2:+53363299 None:intergenic
TTAGTGCCAAGTATGGTCAT+GGG 0.584192 8_2:-53363112 Msa1254990:CDS
AGAGTGTTGAATTTGAAATG+TGG 0.584550 8_2:+53365822 None:intergenic
TTGGTTCGGCAACAGAGATG+TGG 0.596070 8_2:+53365739 None:intergenic
CCGGTCAGGCTTCATGCTGA+GGG 0.599173 8_2:+53365612 None:intergenic
TGTTCATAATCAATAAAGTG+GGG 0.599446 8_2:+53363297 None:intergenic
ATGGTACTTTATGATACTCC+CGG 0.599677 8_2:-53363553 Msa1254990:CDS
TGTATTCTACCATGCTGTGG+GGG 0.600648 8_2:+53360896 None:intergenic
AAAATTGGCGACAAGACGAA+GGG 0.603140 8_2:-53361336 Msa1254990:CDS
GAAGGGTTTCTTAAGCACTC+TGG 0.605070 8_2:-53361319 Msa1254990:CDS
ACACTGGCAAACCAAATGGT+TGG 0.605579 8_2:-53364235 Msa1254990:CDS
AAAATGTTATGCAGGATATG+TGG 0.608007 8_2:-53364290 Msa1254990:intron
GAAAATTGGCGACAAGACGA+AGG 0.608653 8_2:-53361337 Msa1254990:CDS
CTGTATTCTACCATGCTGTG+GGG 0.619095 8_2:+53360895 None:intergenic
AAACAACAGAAGTGTAGTAG+TGG 0.621454 8_2:-53365901 Msa1254990:five_prime_UTR
GTGAAGGTGCACGAAGAAGG+AGG 0.628139 8_2:+53365866 None:intergenic
CAGATAAACCTCAAACAACA+AGG 0.633560 8_2:-53364192 Msa1254990:CDS
GATTATGAAACTGAAGAACT+CGG 0.635424 8_2:-53365571 Msa1254990:CDS
CGGACCAGCTTATTATCCAA+AGG 0.636393 8_2:-53363048 Msa1254990:CDS
GGTTGGGGTGGTGAATCCAA+CGG 0.644037 8_2:+53365792 None:intergenic
GTGTTGGAAGAAGCCATAGG+AGG 0.646829 8_2:-53363335 Msa1254990:CDS
TAGGTATTGTATGATGAGCA+CGG 0.648539 8_2:-53361282 Msa1254990:exon
TAGTGCCAAGTATGGTCATG+GGG 0.654939 8_2:-53363111 Msa1254990:CDS
TGTGGTCCTAACCACAAAAG+CGG 0.654987 8_2:-53365541 Msa1254990:intron
ATACTCTCAAAGCTTCCTAA+CGG 0.655076 8_2:-53363068 Msa1254990:CDS
AAATGTTGGGAAGAGTACAC+TGG 0.663188 8_2:-53364251 Msa1254990:CDS
CCGGTGTTCTACAAGAACAA+AGG 0.666363 8_2:-53363534 Msa1254990:CDS
ATTGTATGATGAGCACGGTG+AGG 0.666666 8_2:-53361277 Msa1254990:exon
TGAAGTTGCAAAGAAACTTG+AGG 0.672367 8_2:-53363252 Msa1254990:intron
TGTTGAATTTGAAATGTGGG+AGG 0.678886 8_2:+53365826 None:intergenic
TGACTACCTGACACACATAG+GGG 0.686657 8_2:+53362057 None:intergenic
GAAGTGTTGGAAGAAGCCAT+AGG 0.698450 8_2:-53363338 Msa1254990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAGTTTGTTTAA+CGG + chr8_2:53361325-53361344 None:intergenic 10.0%
!!! TAATAAAACTTTTTGAAATA+TGG + chr8_2:53362875-53362894 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGCAG+TGG - chr8_2:53361335-53361354 Msa1254990:CDS 15.0%
!!! AAAAAATATGATGTACATTT+TGG - chr8_2:53361402-53361421 Msa1254990:intron 15.0%
!! TTATATATAGAGATAAAAGA+AGG - chr8_2:53363847-53363866 Msa1254990:intron 15.0%
!! ATTTATGAAACAGAAAAATA+TGG + chr8_2:53365358-53365377 None:intergenic 15.0%
!! TTGATTATTCATAATATGAT+AGG + chr8_2:53365598-53365617 None:intergenic 15.0%
!! AGTTTATTCATAAGTAAGTA+CGG - chr8_2:53361503-53361522 Msa1254990:CDS 20.0%
!!! TATATCTCTAGAATCAATTT+TGG - chr8_2:53362181-53362200 Msa1254990:intron 20.0%
!!! TTCTTTGTTCATGTTTTTTA+AGG - chr8_2:53362391-53362410 Msa1254990:intron 20.0%
!!! TCTTTGTTCATGTTTTTTAA+GGG - chr8_2:53362392-53362411 Msa1254990:intron 20.0%
!! TAAAATCAAACAGAAGAATA+AGG + chr8_2:53362691-53362710 None:intergenic 20.0%
!!! CATATATAATGTCTTTTTCA+TGG + chr8_2:53362923-53362942 None:intergenic 20.0%
!! TTATAACAATCAAATAGACT+CGG + chr8_2:53363123-53363142 None:intergenic 20.0%
!!! TATAATAGTTCTTTTTCATG+AGG - chr8_2:53363138-53363157 Msa1254990:CDS 20.0%
!! TTGTTCATAATCAATAAAGT+GGG + chr8_2:53363507-53363526 None:intergenic 20.0%
!!! TTTATTGATTATGAACAAGA+AGG - chr8_2:53363509-53363528 Msa1254990:CDS 20.0%
!! GTATTTATAACTTAATCAAC+TGG - chr8_2:53363596-53363615 Msa1254990:intron 20.0%
!! TGTATAAAATCTTTAGCATT+TGG + chr8_2:53364982-53365001 None:intergenic 20.0%
!!! AAATGCTAAAGATTTTATAC+AGG - chr8_2:53364981-53365000 Msa1254990:intron 20.0%
!!! ACAAAAAAAAGTTTTTCTAG+AGG - chr8_2:53365305-53365324 Msa1254990:intron 20.0%
!! AAGTAAAGGTTAAAGAAAAT+TGG - chr8_2:53365449-53365468 Msa1254990:intron 20.0%
!! TTAATTTATCTTTAAGCCAT+TGG - chr8_2:53365963-53365982 Msa1254990:five_prime_UTR 20.0%
!! ATTAATTTTGTTGACAGCAT+CGG + chr8_2:53360852-53360871 None:intergenic 25.0%
! ATTGACAAACATTATACTGT+TGG - chr8_2:53361469-53361488 Msa1254990:intron 25.0%
! AAACATTATACTGTTGGATA+TGG - chr8_2:53361475-53361494 Msa1254990:intron 25.0%
! CAAAGGGTTTATAGTTTATA+CGG + chr8_2:53361581-53361600 None:intergenic 25.0%
!! TCAAGCAGAATAAATTTTGA+AGG - chr8_2:53361777-53361796 Msa1254990:CDS 25.0%
!! CAAGCAGAATAAATTTTGAA+GGG - chr8_2:53361778-53361797 Msa1254990:CDS 25.0%
!! TGAGTACAATATCTAAAACT+AGG - chr8_2:53361827-53361846 Msa1254990:CDS 25.0%
!! GAGTACAATATCTAAAACTA+GGG - chr8_2:53361828-53361847 Msa1254990:CDS 25.0%
!!! ACAATTGATTTTGACATGTT+TGG + chr8_2:53362162-53362181 None:intergenic 25.0%
! CGGATCAAAAGTAAAAAATA+CGG + chr8_2:53362339-53362358 None:intergenic 25.0%
! TTCTAATATAGCTAGATGTT+GGG - chr8_2:53362367-53362386 Msa1254990:intron 25.0%
!!! CTTTGTTCATGTTTTTTAAG+GGG - chr8_2:53362393-53362412 Msa1254990:intron 25.0%
!!! TTTGTTCATGTTTTTTAAGG+GGG - chr8_2:53362394-53362413 Msa1254990:intron 25.0%
! ATCAGGTTTAATATTAAGTG+CGG - chr8_2:53362665-53362684 Msa1254990:intron 25.0%
! TTGAACTTTGATATTACTCA+CGG + chr8_2:53362766-53362785 None:intergenic 25.0%
! CAGATCATTAATCACTAAAT+GGG + chr8_2:53362980-53362999 None:intergenic 25.0%
! TCAGATCATTAATCACTAAA+TGG + chr8_2:53362981-53363000 None:intergenic 25.0%
! TGTTCATAATCAATAAAGTG+GGG + chr8_2:53363506-53363525 None:intergenic 25.0%
! CTTGTTCATAATCAATAAAG+TGG + chr8_2:53363508-53363527 None:intergenic 25.0%
! AAAATTTACTGATGTTGATG+AGG - chr8_2:53363656-53363675 Msa1254990:intron 25.0%
! AACAATGGACATTTAAACAA+GGG + chr8_2:53363804-53363823 None:intergenic 25.0%
! TCGCAGAAAATTATCATTAT+TGG - chr8_2:53365027-53365046 Msa1254990:intron 25.0%
! CGAACATATTATTATGATTC+TGG - chr8_2:53365129-53365148 Msa1254990:intron 25.0%
!!! TTGTTGTAGCATTAGTTTTA+AGG - chr8_2:53365154-53365173 Msa1254990:intron 25.0%
! ATCAAGGTTAAAGTGTAAAT+AGG + chr8_2:53365333-53365352 None:intergenic 25.0%
! CTTTGAACAGATTAAAGTAA+AGG - chr8_2:53365435-53365454 Msa1254990:intron 25.0%
! TACATAATATGATACAAGAC+TGG + chr8_2:53365557-53365576 None:intergenic 25.0%
!! ATAAATCTTTTCACGTATAG+TGG - chr8_2:53365807-53365826 Msa1254990:CDS 25.0%
!! GAGTGTTGAATTTGAAATGT+GGG + chr8_2:53360980-53360999 None:intergenic 30.0%
!! AGAGTGTTGAATTTGAAATG+TGG + chr8_2:53360981-53361000 None:intergenic 30.0%
AAGAAGAAAAAGCTCTTGTT+TGG + chr8_2:53361113-53361132 None:intergenic 30.0%
GATTATGAAACTGAAGAACT+CGG - chr8_2:53361229-53361248 Msa1254990:intron 30.0%
! AGTTGCTAGTAATATTTCTG+AGG - chr8_2:53361363-53361382 Msa1254990:intron 30.0%
TTCATAAGTAAGTACGGTTT+AGG - chr8_2:53361509-53361528 Msa1254990:CDS 30.0%
TCATAAGTAAGTACGGTTTA+GGG - chr8_2:53361510-53361529 Msa1254990:CDS 30.0%
CAGAATCAAACATACACAAA+GGG + chr8_2:53361597-53361616 None:intergenic 30.0%
ACAGAATCAAACATACACAA+AGG + chr8_2:53361598-53361617 None:intergenic 30.0%
TTTGTGTATGTTTGATTCTG+TGG - chr8_2:53361597-53361616 Msa1254990:intron 30.0%
TTTGAAGGGAAAATCAATTG+TGG - chr8_2:53361792-53361811 Msa1254990:CDS 30.0%
TGCCCTTAAATGTATATTGA+CGG - chr8_2:53362056-53362075 Msa1254990:intron 30.0%
GACCGTCAATATACATTTAA+GGG + chr8_2:53362061-53362080 None:intergenic 30.0%
!! GTATGTTTGGTTTCACTTTT+GGG + chr8_2:53362211-53362230 None:intergenic 30.0%
!! TGTATGTTTGGTTTCACTTT+TGG + chr8_2:53362212-53362231 None:intergenic 30.0%
GTTCTAATATAGCTAGATGT+TGG - chr8_2:53362366-53362385 Msa1254990:intron 30.0%
!!! TCTGTTTTTATATGCGTGAT+TGG - chr8_2:53362440-53362459 Msa1254990:intron 30.0%
!!! CTGTTTTTATATGCGTGATT+GGG - chr8_2:53362441-53362460 Msa1254990:intron 30.0%
!! TGTTTTTATATGCGTGATTG+GGG - chr8_2:53362442-53362461 Msa1254990:intron 30.0%
CATAATAAGCAATGCAACAA+AGG + chr8_2:53362484-53362503 None:intergenic 30.0%
AAAATGTTATGCAGGATATG+TGG - chr8_2:53362510-53362529 Msa1254990:intron 30.0%
TTACTTGGTAAACCAAATGT+TGG - chr8_2:53362535-53362554 Msa1254990:intron 30.0%
TACTTGGTAAACCAAATGTT+GGG - chr8_2:53362536-53362555 Msa1254990:intron 30.0%
! CTGTAACTATTGACAACTTT+TGG + chr8_2:53362591-53362610 None:intergenic 30.0%
AAAACAATGAACACAATGTC+TGG + chr8_2:53362852-53362871 None:intergenic 30.0%
AATGCTGTGCAGTAATATAA+TGG - chr8_2:53363020-53363039 Msa1254990:intron 30.0%
! TGCAGTAATATAATGGAATG+TGG - chr8_2:53363027-53363046 Msa1254990:intron 30.0%
AAATTCGTTAGTTCAACCAT+TGG - chr8_2:53363086-53363105 Msa1254990:CDS 30.0%
AATTCGTTAGTTCAACCATT+GGG - chr8_2:53363087-53363106 Msa1254990:CDS 30.0%
ATCTATGAATCTATTGCAGA+TGG - chr8_2:53363228-53363247 Msa1254990:intron 30.0%
!!! ACCAAAAACCATACTTTTTC+AGG + chr8_2:53363382-53363401 None:intergenic 30.0%
AAGAATGCGATTCAGAAAAA+AGG + chr8_2:53363429-53363448 None:intergenic 30.0%
TCTTTAGATTGATGAAGTGT+TGG - chr8_2:53363449-53363468 Msa1254990:CDS 30.0%
TTCATAATCAATAAAGTGGG+GGG + chr8_2:53363504-53363523 None:intergenic 30.0%
GTTCATAATCAATAAAGTGG+GGG + chr8_2:53363505-53363524 None:intergenic 30.0%
! TTTGACTTTAAACATGCCTT+TGG + chr8_2:53363771-53363790 None:intergenic 30.0%
CAACAATGGACATTTAAACA+AGG + chr8_2:53363805-53363824 None:intergenic 30.0%
TAATTCTTTCGCTGTCTAAT+GGG + chr8_2:53363876-53363895 None:intergenic 30.0%
ATAATTCTTTCGCTGTCTAA+TGG + chr8_2:53363877-53363896 None:intergenic 30.0%
CAATTACTCTTTCCATATTC+AGG + chr8_2:53363918-53363937 None:intergenic 30.0%
TACACAATGAGCAAATTAAC+TGG + chr8_2:53364100-53364119 None:intergenic 30.0%
AGCGTAACTAAGATATATTC+AGG + chr8_2:53364572-53364591 None:intergenic 30.0%
TGAATTCAGGAACAACATTA+AGG + chr8_2:53364637-53364656 None:intergenic 30.0%
GAAAGCTAGAAAGAAATTCA+AGG - chr8_2:53364837-53364856 Msa1254990:intron 30.0%
! TTCTTGTTTCCAATTATTCC+AGG - chr8_2:53364930-53364949 Msa1254990:intron 30.0%
TAACATTCACCTGGAATAAT+TGG + chr8_2:53364942-53364961 None:intergenic 30.0%
TATAGCTTATAACATTCACC+TGG + chr8_2:53364951-53364970 None:intergenic 30.0%
GGTGAATGTTATAAGCTATA+AGG - chr8_2:53364951-53364970 Msa1254990:intron 30.0%
! TGCTAAAGATTTTATACAGG+TGG - chr8_2:53364984-53365003 Msa1254990:intron 30.0%
! TTTTATACAGGTGGAGATTT+TGG - chr8_2:53364993-53365012 Msa1254990:intron 30.0%
GTTGATTACTTGTGAACTTA+TGG - chr8_2:53365078-53365097 Msa1254990:intron 30.0%
!! TGAACTTATGGTATTGATTG+CGG - chr8_2:53365090-53365109 Msa1254990:intron 30.0%
CTGCTAAATGATATCAAACT+CGG + chr8_2:53365191-53365210 None:intergenic 30.0%
ACAGAAAAATATGGAGATCA+AGG + chr8_2:53365349-53365368 None:intergenic 30.0%
AATTAATCACGAGCTTCAAT+TGG - chr8_2:53365375-53365394 Msa1254990:intron 30.0%
AATCAAAACACAGACTGAAA+CGG - chr8_2:53365612-53365631 Msa1254990:CDS 30.0%
! AAACAACAGAAGTGTAGTAG+TGG - chr8_2:53360899-53360918 Msa1254990:three_prime_UTR 35.0%
! TGTTGAATTTGAAATGTGGG+AGG + chr8_2:53360977-53360996 None:intergenic 35.0%
TTGTTTGGTTGAGAATGCTT+TGG + chr8_2:53361098-53361117 None:intergenic 35.0%
!! GAAAAAACAAACCGCTTTTG+TGG + chr8_2:53361273-53361292 None:intergenic 35.0%
CATAAGTAAGTACGGTTTAG+GGG - chr8_2:53361511-53361530 Msa1254990:CDS 35.0%
! CTAGGGTTTAGAAACTGTTT+TGG - chr8_2:53361845-53361864 Msa1254990:CDS 35.0%
GGGTATTTATAGCCTTTCTT+GGG - chr8_2:53361891-53361910 Msa1254990:intron 35.0%
! AACGCTCTAAACATGACTTA+GGG + chr8_2:53361954-53361973 None:intergenic 35.0%
GGACCGTCAATATACATTTA+AGG + chr8_2:53362062-53362081 None:intergenic 35.0%
ATGAGAGCTTAGTGTATGTT+TGG + chr8_2:53362224-53362243 None:intergenic 35.0%
GCTATATTAGAACAGCAACA+CGG + chr8_2:53362359-53362378 None:intergenic 35.0%
!!! TTCATGTTTTTTAAGGGGGT+AGG - chr8_2:53362398-53362417 Msa1254990:intron 35.0%
!!! TTTTTTAAGGGGGTAGGATT+TGG - chr8_2:53362404-53362423 Msa1254990:intron 35.0%
TGTGTGTCAAAATGTTATGC+AGG - chr8_2:53362502-53362521 Msa1254990:intron 35.0%
CAGATAAACCTCAAACAACA+AGG - chr8_2:53362608-53362627 Msa1254990:intron 35.0%
CGAGTTCTTTGTATATGTTC+TGG - chr8_2:53362634-53362653 Msa1254990:intron 35.0%
TGATATTACTCACGGAATGA+AGG + chr8_2:53362758-53362777 None:intergenic 35.0%
! CTGGAAGATCACATCTATTT+TGG + chr8_2:53362833-53362852 None:intergenic 35.0%
TTGTACATGCATAGCAATGA+CGG + chr8_2:53363178-53363197 None:intergenic 35.0%
ATGGTACTTTATGATACTCC+CGG - chr8_2:53363247-53363266 Msa1254990:intron 35.0%
! AGTTAATGCTGATTGTGTGT+TGG - chr8_2:53363333-53363352 Msa1254990:CDS 35.0%
!! GCCTGAAAAAGTATGGTTTT+TGG - chr8_2:53363378-53363397 Msa1254990:intron 35.0%
AAGAAGGATCTTATCAAACC+TGG - chr8_2:53363525-53363544 Msa1254990:CDS 35.0%
TGAAGTTGCAAAGAAACTTG+AGG - chr8_2:53363548-53363567 Msa1254990:CDS 35.0%
ATACTCTCAAAGCTTCCTAA+CGG - chr8_2:53363732-53363751 Msa1254990:intron 35.0%
TGTCCATTGTTGCATTATCA+CGG - chr8_2:53363813-53363832 Msa1254990:intron 35.0%
TTCTATTACGCTCCTGAATA+TGG - chr8_2:53363903-53363922 Msa1254990:intron 35.0%
GTTGTTCACGTTCATATATC+CGG + chr8_2:53364034-53364053 None:intergenic 35.0%
TCACGTATTTACATGCTCAA+AGG + chr8_2:53364239-53364258 None:intergenic 35.0%
GAGCATGTAAATACGTGATA+TGG - chr8_2:53364241-53364260 Msa1254990:CDS 35.0%
GAGATGCATCAATGTTATTG+TGG - chr8_2:53364282-53364301 Msa1254990:intron 35.0%
ATCAATGTTATTGTGGAGAC+TGG - chr8_2:53364289-53364308 Msa1254990:intron 35.0%
ACATTCACAAATCACGATAC+AGG + chr8_2:53364356-53364375 None:intergenic 35.0%
! AAGGCTTTCTTTTTCCAGTT+TGG + chr8_2:53364395-53364414 None:intergenic 35.0%
TCATGTTATAGTGATAGCTG+TGG + chr8_2:53364522-53364541 None:intergenic 35.0%
AATGTTGTTCCTGAATTCAC+AGG - chr8_2:53364638-53364657 Msa1254990:intron 35.0%
TCAGCGACAAAAAATCTTTC+TGG + chr8_2:53364681-53364700 None:intergenic 35.0%
!! GAACTTATGGTATTGATTGC+GGG - chr8_2:53365091-53365110 Msa1254990:intron 35.0%
ATTGAGCACAACATACATGT+AGG + chr8_2:53365217-53365236 None:intergenic 35.0%
TGTTGTGCTCAATTACTTTC+AGG - chr8_2:53365224-53365243 Msa1254990:intron 35.0%
TTTCTTAAGCACTCTGGTTA+TGG - chr8_2:53365487-53365506 Msa1254990:intron 35.0%
! TAGGTATTGTATGATGAGCA+CGG - chr8_2:53365518-53365537 Msa1254990:intron 35.0%
TCTTGTTAATGCTCTACAAC+AGG - chr8_2:53365703-53365722 Msa1254990:CDS 35.0%
! AATCTTTTCACGTATAGTGG+TGG - chr8_2:53365810-53365829 Msa1254990:CDS 35.0%
AGAGTTGAAGTTGAAGGTGA+AGG + chr8_2:53360953-53360972 None:intergenic 40.0%
GTTATGAAGGAAAGTGGTTG+GGG + chr8_2:53361026-53361045 None:intergenic 40.0%
GGTTATGAAGGAAAGTGGTT+GGG + chr8_2:53361027-53361046 None:intergenic 40.0%
!! TTGATTCGGTTCGGTTATGA+AGG + chr8_2:53361039-53361058 None:intergenic 40.0%
! TTGGTTGAGAATGCTTTGGA+GGG + chr8_2:53361094-53361113 None:intergenic 40.0%
TTTGGTTGAGAATGCTTTGG+AGG + chr8_2:53361095-53361114 None:intergenic 40.0%
GAAGAACTCGGTTATGATTG+TGG - chr8_2:53361241-53361260 Msa1254990:intron 40.0%
!! AACAAACCGCTTTTGTGGTT+AGG + chr8_2:53361268-53361287 None:intergenic 40.0%
TTAGGGGCAATGTTGTAAAC+TGG - chr8_2:53361527-53361546 Msa1254990:CDS 40.0%
! GGGGTATTTATAGCCTTTCT+TGG - chr8_2:53361890-53361909 Msa1254990:intron 40.0%
CGGAAATATAAGCCCAAGAA+AGG + chr8_2:53361906-53361925 None:intergenic 40.0%
GGCTTATATTTCCGTGACTT+AGG - chr8_2:53361912-53361931 Msa1254990:intron 40.0%
! GAACGCTCTAAACATGACTT+AGG + chr8_2:53361955-53361974 None:intergenic 40.0%
! AGTCATGTTTAGAGCGTTCT+AGG - chr8_2:53361956-53361975 Msa1254990:intron 40.0%
GTGATGAATTGCGAAGTTGA+CGG - chr8_2:53362118-53362137 Msa1254990:CDS 40.0%
! GGGTAGGATTTGGAATTCAA+AGG - chr8_2:53362414-53362433 Msa1254990:intron 40.0%
AGTGTACTCTTCCCAACATT+TGG + chr8_2:53362550-53362569 None:intergenic 40.0%
! AAATGTTGGGAAGAGTACAC+TGG - chr8_2:53362549-53362568 Msa1254990:intron 40.0%
! ACAACTTTTGGCCAACCATT+TGG + chr8_2:53362579-53362598 None:intergenic 40.0%
!! ATGTTCTGGCTCAGATTATC+AGG - chr8_2:53362648-53362667 Msa1254990:intron 40.0%
! AATGAAGGCACGAAATCAAG+AGG + chr8_2:53362743-53362762 None:intergenic 40.0%
TAGTTCAACCATTGGGTTCT+AGG - chr8_2:53363094-53363113 Msa1254990:CDS 40.0%
TGTACATGCATAGCAATGAC+GGG + chr8_2:53363177-53363196 None:intergenic 40.0%
CTTTGTTCTTGTAGAACACC+GGG + chr8_2:53363268-53363287 None:intergenic 40.0%
CCTTTGTTCTTGTAGAACAC+CGG + chr8_2:53363269-53363288 None:intergenic 40.0%
! GTAAAGCGCCTGAAAAAGTA+TGG - chr8_2:53363371-53363390 Msa1254990:intron 40.0%
TTTATCTTTGTGGCCTCCTA+TGG + chr8_2:53363481-53363500 None:intergenic 40.0%
AGTTTCTTTGCAACTTCACC+AGG + chr8_2:53363546-53363565 None:intergenic 40.0%
GTTGCAAAGAAACTTGAGGT+TGG - chr8_2:53363552-53363571 Msa1254990:CDS 40.0%
! GATTTTTCCTGTGTTTGCAG+TGG - chr8_2:53363628-53363647 Msa1254990:intron 40.0%
TTGTATACCACTGCAAACAC+AGG + chr8_2:53363638-53363657 None:intergenic 40.0%
ATTCCAGTTAGTGCCAAGTA+TGG - chr8_2:53363681-53363700 Msa1254990:intron 40.0%
TTAGTGCCAAGTATGGTCAT+GGG - chr8_2:53363688-53363707 Msa1254990:intron 40.0%
CATGCCTTTGGATAATAAGC+TGG + chr8_2:53363759-53363778 None:intergenic 40.0%
! AGACCGTGATAATGCAACAA+TGG + chr8_2:53363819-53363838 None:intergenic 40.0%
GCTTATGGTGAACCTCAATA+AGG - chr8_2:53363999-53364018 Msa1254990:intron 40.0%
CTCAATAAGGTATAGCAGAC+CGG - chr8_2:53364012-53364031 Msa1254990:intron 40.0%
TTGATGCATCTCATGTCGTT+AGG + chr8_2:53364274-53364293 None:intergenic 40.0%
ATACAGGTGTGATTACACAC+TGG + chr8_2:53364340-53364359 None:intergenic 40.0%
TATTTCCTGTACTGCCAAAC+TGG - chr8_2:53364378-53364397 Msa1254990:intron 40.0%
! TTTTTCCAGTTTGGCAGTAC+AGG + chr8_2:53364386-53364405 None:intergenic 40.0%
! TAATGTACGCTGTCACTTGA+AGG + chr8_2:53364414-53364433 None:intergenic 40.0%
CAATAGTAGCATGTCAGTGT+TGG + chr8_2:53364493-53364512 None:intergenic 40.0%
TTAGTTACGCTTCTGCATAC+TGG - chr8_2:53364581-53364600 Msa1254990:intron 40.0%
ATGACTACCTGACACACATA+GGG + chr8_2:53364747-53364766 None:intergenic 40.0%
AATGACTACCTGACACACAT+AGG + chr8_2:53364748-53364767 None:intergenic 40.0%
! GCTTTCCTAAACCTTTTGCA+GGG + chr8_2:53364823-53364842 None:intergenic 40.0%
! AGCTTTCCTAAACCTTTTGC+AGG + chr8_2:53364824-53364843 None:intergenic 40.0%
GTGCTCAATTACTTTCAGGA+AGG - chr8_2:53365228-53365247 Msa1254990:intron 40.0%
AAAATTGGCGACAAGACGAA+GGG - chr8_2:53365464-53365483 Msa1254990:intron 40.0%
TCTGGTTATGGAGGTCAAAT+AGG - chr8_2:53365499-53365518 Msa1254990:intron 40.0%
!! ACACAGACTGAAACGGATTT+TGG - chr8_2:53365619-53365638 Msa1254990:CDS 40.0%
ACTGTATTCTACCATGCTGT+GGG + chr8_2:53365909-53365928 None:intergenic 40.0%
GGAGGAAGAGTTGAAGTTGA+AGG + chr8_2:53360959-53360978 None:intergenic 45.0%
CGGTTATGAAGGAAAGTGGT+TGG + chr8_2:53361028-53361047 None:intergenic 45.0%
! GGTTCGGTTATGAAGGAAAG+TGG + chr8_2:53361032-53361051 None:intergenic 45.0%
!! ACAGAGATGTGGCGTTGATT+CGG + chr8_2:53361053-53361072 None:intergenic 45.0%
CTTCATGCTGAGGGATAAGA+AGG + chr8_2:53361182-53361201 None:intergenic 45.0%
ATGAAGCCTGACCGGAATTT+GGG - chr8_2:53361196-53361215 Msa1254990:intron 45.0%
TGTGGTCCTAACCACAAAAG+CGG - chr8_2:53361259-53361278 Msa1254990:three_prime_UTR 45.0%
ATGCCTTGAGAATGCTCAGA+GGG - chr8_2:53361870-53361889 Msa1254990:intron 45.0%
CAAACATGACACTCTGCACT+CGG - chr8_2:53362250-53362269 Msa1254990:intron 45.0%
! GCAGGATATGTGGCTTTACT+TGG - chr8_2:53362520-53362539 Msa1254990:intron 45.0%
GAGTACACTGGCAAACCAAA+TGG - chr8_2:53362561-53362580 Msa1254990:intron 45.0%
ACACTGGCAAACCAAATGGT+TGG - chr8_2:53362565-53362584 Msa1254990:intron 45.0%
!! ACTCGATGCCTTGTTGTTTG+AGG + chr8_2:53362619-53362638 None:intergenic 45.0%
CCGGTGTTCTACAAGAACAA+AGG - chr8_2:53363266-53363285 Msa1254990:CDS 45.0%
!! GAAGTGTTGGAAGAAGCCAT+AGG - chr8_2:53363462-53363481 Msa1254990:CDS 45.0%
AAGTGGGGGGTTTATCTTTG+TGG + chr8_2:53363491-53363510 None:intergenic 45.0%
TGACCATACTTGGCACTAAC+TGG + chr8_2:53363687-53363706 None:intergenic 45.0%
GTTAGTGCCAAGTATGGTCA+TGG - chr8_2:53363687-53363706 Msa1254990:intron 45.0%
TAGTGCCAAGTATGGTCATG+GGG - chr8_2:53363689-53363708 Msa1254990:intron 45.0%
TTCAACCCCATGACCATACT+TGG + chr8_2:53363697-53363716 None:intergenic 45.0%
GGGTTGAAGATGTCAAGAAC+TGG - chr8_2:53363709-53363728 Msa1254990:intron 45.0%
GGATAATAAGCTGGTCCGTT+AGG + chr8_2:53363750-53363769 None:intergenic 45.0%
CGGACCAGCTTATTATCCAA+AGG - chr8_2:53363752-53363771 Msa1254990:intron 45.0%
TCAAACCTTGCTAGTACCCT+TGG - chr8_2:53363976-53363995 Msa1254990:intron 45.0%
CAAACCTTGCTAGTACCCTT+GGG - chr8_2:53363977-53363996 Msa1254990:intron 45.0%
CGGTCTGCTATACCTTATTG+AGG + chr8_2:53364014-53364033 None:intergenic 45.0%
ATGCATCTCATGTCGTTAGG+CGG + chr8_2:53364271-53364290 None:intergenic 45.0%
TCACAGCATCCTGTGAATTC+AGG + chr8_2:53364650-53364669 None:intergenic 45.0%
TGAAATCCCCTATGTGTGTC+AGG - chr8_2:53364737-53364756 Msa1254990:intron 45.0%
TGACTACCTGACACACATAG+GGG + chr8_2:53364746-53364765 None:intergenic 45.0%
! TCCTAAACCTTTTGCAGGGT+GGG + chr8_2:53364819-53364838 None:intergenic 45.0%
! TTCCTAAACCTTTTGCAGGG+TGG + chr8_2:53364820-53364839 None:intergenic 45.0%
ACGAGCTTCAATTGGTACTG+TGG - chr8_2:53365383-53365402 Msa1254990:intron 45.0%
GGTACAATCGTCATCAACAC+TGG - chr8_2:53365404-53365423 Msa1254990:intron 45.0%
GAAAATTGGCGACAAGACGA+AGG - chr8_2:53365463-53365482 Msa1254990:intron 45.0%
GAAGGGTTTCTTAAGCACTC+TGG - chr8_2:53365481-53365500 Msa1254990:intron 45.0%
CTTAAGCACTCTGGTTATGG+AGG - chr8_2:53365490-53365509 Msa1254990:intron 45.0%
ATTGTATGATGAGCACGGTG+AGG - chr8_2:53365523-53365542 Msa1254990:intron 45.0%
TTGTATGATGAGCACGGTGA+GGG - chr8_2:53365524-53365543 Msa1254990:intron 45.0%
!! CAGACTGAAACGGATTTTGG+TGG - chr8_2:53365622-53365641 Msa1254990:CDS 45.0%
GATCATTGCACATACCTGCA+AGG + chr8_2:53365667-53365686 None:intergenic 45.0%
ACACCAAACTGTCTCGAGTA+TGG - chr8_2:53365744-53365763 Msa1254990:CDS 45.0%
CACCAAACTGTCTCGAGTAT+GGG - chr8_2:53365745-53365764 Msa1254990:CDS 45.0%
AACCCATACTCGAGACAGTT+TGG + chr8_2:53365750-53365769 None:intergenic 45.0%
TTCACGTATAGTGGTGGTCA+TGG - chr8_2:53365816-53365835 Msa1254990:CDS 45.0%
TGTATTCTACCATGCTGTGG+GGG + chr8_2:53365907-53365926 None:intergenic 45.0%
CTGTATTCTACCATGCTGTG+GGG + chr8_2:53365908-53365927 None:intergenic 45.0%
CACTGTATTCTACCATGCTG+TGG + chr8_2:53365910-53365929 None:intergenic 45.0%
! AAGGTGAAGGTGCACGAAGA+AGG + chr8_2:53360940-53360959 None:intergenic 50.0%
CAACACTCTTTCTTCGCCGT+TGG - chr8_2:53360992-53361011 Msa1254990:three_prime_UTR 50.0%
ATGAAGGAAAGTGGTTGGGG+TGG + chr8_2:53361023-53361042 None:intergenic 50.0%
!! GATGTGGCGTTGATTCGGTT+CGG + chr8_2:53361048-53361067 None:intergenic 50.0%
!! TTGGTTCGGCAACAGAGATG+TGG + chr8_2:53361064-53361083 None:intergenic 50.0%
!! TGGAGGGAGAGTGTTTGGTT+CGG + chr8_2:53361078-53361097 None:intergenic 50.0%
!! TGCTTTGGAGGGAGAGTGTT+TGG + chr8_2:53361083-53361102 None:intergenic 50.0%
CATGAAGCCTGACCGGAATT+TGG - chr8_2:53361195-53361214 Msa1254990:intron 50.0%
CATCGAGCAAGCCCAAATTC+CGG + chr8_2:53361210-53361229 None:intergenic 50.0%
CATGCCTTGAGAATGCTCAG+AGG - chr8_2:53361869-53361888 Msa1254990:intron 50.0%
TGCCTTGAGAATGCTCAGAG+GGG - chr8_2:53361871-53361890 Msa1254990:intron 50.0%
TACCCCTCTGAGCATTCTCA+AGG + chr8_2:53361876-53361895 None:intergenic 50.0%
GTGCTTCTAGTAGCCTTCTG+AGG - chr8_2:53361978-53361997 Msa1254990:intron 50.0%
! CTTCTAGTAGCCTTCTGAGG+TGG - chr8_2:53361981-53362000 Msa1254990:intron 50.0%
GTTTGGTTGCTCTTGAGCAC+TGG + chr8_2:53362145-53362164 None:intergenic 50.0%
CTCGGAGATGTAGGCACAAT+TGG - chr8_2:53362268-53362287 Msa1254990:intron 50.0%
CTCGGTTACCTAGAACCCAA+TGG + chr8_2:53363105-53363124 None:intergenic 50.0%
GTGTTGGAAGAAGCCATAGG+AGG - chr8_2:53363465-53363484 Msa1254990:CDS 50.0%
!! TAAGCCCAAGGGTACTAGCA+AGG + chr8_2:53363984-53364003 None:intergenic 50.0%
TGCTAGTACCCTTGGGCTTA+TGG - chr8_2:53363984-53364003 Msa1254990:intron 50.0%
GAGGTTCACCATAAGCCCAA+GGG + chr8_2:53363995-53364014 None:intergenic 50.0%
TGAGGTTCACCATAAGCCCA+AGG + chr8_2:53363996-53364015 None:intergenic 50.0%
! CCTAAACCTTTTGCAGGGTG+GGG + chr8_2:53364818-53364837 None:intergenic 50.0%
CATACCTGCAAGGAGAGGAA+GGG + chr8_2:53365657-53365676 None:intergenic 50.0%
ACATACCTGCAAGGAGAGGA+AGG + chr8_2:53365658-53365677 None:intergenic 50.0%
TTGCACATACCTGCAAGGAG+AGG + chr8_2:53365662-53365681 None:intergenic 50.0%
! GTGAAGGTGCACGAAGAAGG+AGG + chr8_2:53360937-53360956 None:intergenic 55.0%
GGTTGGGGTGGTGAATCCAA+CGG + chr8_2:53361011-53361030 None:intergenic 55.0%
AGCAAGCCCAAATTCCGGTC+AGG + chr8_2:53361205-53361224 None:intergenic 55.0%
ATTTCCGTGACTTAGGCCCC+AGG - chr8_2:53361919-53361938 Msa1254990:intron 55.0%
ACTTAGGCCCCAGGCAACTT+GGG - chr8_2:53361928-53361947 Msa1254990:intron 55.0%
ACTTAGGGCCCAAGTTGCCT+GGG + chr8_2:53361939-53361958 None:intergenic 55.0%
AGAAGGGCCCAACTGACCTT+GGG + chr8_2:53362025-53362044 None:intergenic 55.0%
CACTCTGCACTCGGAGATGT+AGG - chr8_2:53362259-53362278 Msa1254990:intron 55.0%
GCACGAAATCAAGAGGCGAG+GGG + chr8_2:53362736-53362755 None:intergenic 55.0%
GGCACGAAATCAAGAGGCGA+GGG + chr8_2:53362737-53362756 None:intergenic 55.0%
AGGCACGAAATCAAGAGGCG+AGG + chr8_2:53362738-53362757 None:intergenic 55.0%
CCCCACCCTGCAAAAGGTTT+AGG - chr8_2:53364815-53364834 Msa1254990:intron 55.0%
! TGCAAGGAGAGGAAGGGTGT+TGG + chr8_2:53365651-53365670 None:intergenic 55.0%
AACACCCTTCCTCTCCTTGC+AGG - chr8_2:53365650-53365669 Msa1254990:CDS 55.0%
ATGCTTTAGCCCCCACAGCA+TGG - chr8_2:53365895-53365914 Msa1254990:exon 55.0%
CCGGTCAGGCTTCATGCTGA+GGG + chr8_2:53361191-53361210 None:intergenic 60.0%
CCCTCAGCATGAAGCCTGAC+CGG - chr8_2:53361188-53361207 Msa1254990:intron 60.0%
TCCGGTCAGGCTTCATGCTG+AGG + chr8_2:53361192-53361211 None:intergenic 60.0%
GTTGCCTGGGGCCTAAGTCA+CGG + chr8_2:53361926-53361945 None:intergenic 60.0%
GACTTAGGCCCCAGGCAACT+TGG - chr8_2:53361927-53361946 Msa1254990:intron 60.0%
CTTAGGGCCCAAGTTGCCTG+GGG + chr8_2:53361938-53361957 None:intergenic 60.0%
GACTTAGGGCCCAAGTTGCC+TGG + chr8_2:53361940-53361959 None:intergenic 60.0%
CAGAAGGGCCCAACTGACCT+TGG + chr8_2:53362026-53362045 None:intergenic 60.0%
CAAGGTCAGTTGGGCCCTTC+TGG - chr8_2:53362024-53362043 Msa1254990:intron 60.0%
GTCAGTTGGGCCCTTCTGGA+GGG - chr8_2:53362028-53362047 Msa1254990:intron 60.0%
AGCCCTCCAAGCACGAGTCT+TGG - chr8_2:53362084-53362103 Msa1254990:CDS 60.0%
GCCCTCCAAGCACGAGTCTT+GGG - chr8_2:53362085-53362104 Msa1254990:CDS 60.0%
CCCCAAGACTCGTGCTTGGA+GGG + chr8_2:53362089-53362108 None:intergenic 60.0%
CCCTCCAAGCACGAGTCTTG+GGG - chr8_2:53362086-53362105 Msa1254990:CDS 60.0%
CTTGCCCCAAGACTCGTGCT+TGG + chr8_2:53362093-53362112 None:intergenic 60.0%
CAAGCACGAGTCTTGGGGCA+AGG - chr8_2:53362091-53362110 Msa1254990:CDS 60.0%
! CTTTTGCAGGGTGGGGAGTC+GGG + chr8_2:53364811-53364830 None:intergenic 60.0%
! CCTTTTGCAGGGTGGGGAGT+CGG + chr8_2:53364812-53364831 None:intergenic 60.0%
!! CCTAAGGGCGCCACCTCAGA+AGG + chr8_2:53361994-53362013 None:intergenic 65.0%
!! CCTTCTGAGGTGGCGCCCTT+AGG - chr8_2:53361991-53362010 Msa1254990:intron 65.0%
! TCTGAGGTGGCGCCCTTAGG+AGG - chr8_2:53361994-53362013 Msa1254990:intron 65.0%
CCTTGGGCGCGTCCTCCTAA+GGG + chr8_2:53362009-53362028 None:intergenic 65.0%
ACCTTGGGCGCGTCCTCCTA+AGG + chr8_2:53362010-53362029 None:intergenic 65.0%
AGGACGCGCCCAAGGTCAGT+TGG - chr8_2:53362014-53362033 Msa1254990:intron 65.0%
GGACGCGCCCAAGGTCAGTT+GGG - chr8_2:53362015-53362034 Msa1254990:intron 65.0%
GGTCAGTTGGGCCCTTCTGG+AGG - chr8_2:53362027-53362046 Msa1254990:intron 65.0%
GGGCACAACGCCCTCCAGAA+GGG + chr8_2:53362041-53362060 None:intergenic 65.0%
AGGGCACAACGCCCTCCAGA+AGG + chr8_2:53362042-53362061 None:intergenic 65.0%
GACTCGTGCTTGGAGGGCTG+TGG + chr8_2:53362083-53362102 None:intergenic 65.0%
GCCCCAAGACTCGTGCTTGG+AGG + chr8_2:53362090-53362109 None:intergenic 65.0%
CCGACTCCCCACCCTGCAAA+AGG - chr8_2:53364809-53364828 Msa1254990:intron 65.0%
CCCTTAGGAGGACGCGCCCA+AGG - chr8_2:53362006-53362025 Msa1254990:intron 70.0%
CAGGGTGGGGAGTCGGGAAG+TGG + chr8_2:53364805-53364824 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 53360835 53365987 53360835 ID=Msa1254990;Name=Msa1254990
chr8_2 mRNA 53360835 53365987 53360835 ID=Msa1254990-mRNA-1;Parent=Msa1254990;Name=Msa1254990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=91|0.8|0.81|0.90|0.7|0.63|11|358|430
chr8_2 exon 53360835 53361150 53360835 ID=Msa1254990-mRNA-1:exon:16491;Parent=Msa1254990-mRNA-1
chr8_2 exon 53361249 53361377 53361249 ID=Msa1254990-mRNA-1:exon:16490;Parent=Msa1254990-mRNA-1
chr8_2 exon 53361496 53361576 53361496 ID=Msa1254990-mRNA-1:exon:16489;Parent=Msa1254990-mRNA-1
chr8_2 exon 53361769 53361870 53361769 ID=Msa1254990-mRNA-1:exon:16488;Parent=Msa1254990-mRNA-1
chr8_2 exon 53362064 53362162 53362064 ID=Msa1254990-mRNA-1:exon:16487;Parent=Msa1254990-mRNA-1
chr8_2 exon 53362621 53362651 53362621 ID=Msa1254990-mRNA-1:exon:16486;Parent=Msa1254990-mRNA-1
chr8_2 exon 53363038 53363174 53363038 ID=Msa1254990-mRNA-1:exon:16485;Parent=Msa1254990-mRNA-1
chr8_2 exon 53363253 53363366 53363253 ID=Msa1254990-mRNA-1:exon:16484;Parent=Msa1254990-mRNA-1
chr8_2 exon 53363435 53363575 53363435 ID=Msa1254990-mRNA-1:exon:16483;Parent=Msa1254990-mRNA-1
chr8_2 exon 53364153 53364298 53364153 ID=Msa1254990-mRNA-1:exon:16482;Parent=Msa1254990-mRNA-1
chr8_2 exon 53365542 53365987 53365542 ID=Msa1254990-mRNA-1:exon:16481;Parent=Msa1254990-mRNA-1
chr8_2 five_prime_UTR 53365897 53365987 53365897 ID=Msa1254990-mRNA-1:five_prime_utr;Parent=Msa1254990-mRNA-1
chr8_2 CDS 53365542 53365896 53365542 ID=Msa1254990-mRNA-1:cds;Parent=Msa1254990-mRNA-1
chr8_2 CDS 53364153 53364298 53364153 ID=Msa1254990-mRNA-1:cds;Parent=Msa1254990-mRNA-1
chr8_2 CDS 53363435 53363575 53363435 ID=Msa1254990-mRNA-1:cds;Parent=Msa1254990-mRNA-1
chr8_2 CDS 53363253 53363366 53363253 ID=Msa1254990-mRNA-1:cds;Parent=Msa1254990-mRNA-1
chr8_2 CDS 53363038 53363174 53363038 ID=Msa1254990-mRNA-1:cds;Parent=Msa1254990-mRNA-1
chr8_2 CDS 53362621 53362651 53362621 ID=Msa1254990-mRNA-1:cds;Parent=Msa1254990-mRNA-1
chr8_2 CDS 53362064 53362162 53362064 ID=Msa1254990-mRNA-1:cds;Parent=Msa1254990-mRNA-1
chr8_2 CDS 53361769 53361870 53361769 ID=Msa1254990-mRNA-1:cds;Parent=Msa1254990-mRNA-1
chr8_2 CDS 53361496 53361576 53361496 ID=Msa1254990-mRNA-1:cds;Parent=Msa1254990-mRNA-1
chr8_2 CDS 53361291 53361377 53361291 ID=Msa1254990-mRNA-1:cds;Parent=Msa1254990-mRNA-1
chr8_2 three_prime_UTR 53361249 53361290 53361249 ID=Msa1254990-mRNA-1:three_prime_utr;Parent=Msa1254990-mRNA-1
chr8_2 three_prime_UTR 53360835 53361150 53360835 ID=Msa1254990-mRNA-1:three_prime_utr;Parent=Msa1254990-mRNA-1
Gene Sequence

>Msa1254990

ATGAAGAACCTCCTTCTTCGTGCACCTTCACCTTCAACTTCAACTCTTCCTCCCACATTTCAAATTCAACACTCTTTCTTCGCCGTTGGATTCACCACCCCAACCACTTTCCTTCATAACCGAACCGAATCAACGCCACATCTCTGTTGCCGAACCAAACACTCTCCCTCCAAAGCATTCTCAACCAAACAAGAGCTTTTTCTTCTTCAACAAGAATTAGATGAAGATGATGAAGAAATAGACGATGACACTTCCTTCTTATCCCTCAGCATGAAGCCTGACCGGAATTTGGGCTTGCTCGATGATTATGAAACTGAAGAACTCGGTTATGATTGTGGTCCTAACCACAAAAGCGGATATGTGGCTTTACTTGGTAAACCAAATGTTGGGAAGAGTACACTGGCAAACCAAATGGTTGGCCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACAACAAGGCATCGAGTTCTTTGTATATGTTCTGGCTCAGATTATCAGATGGTACTTTATGATACTCCCGGTGTTCTACAAGAACAAAGGCACAAGTTAGACTCAATGATGATGCAAAATGTTCGCAGCGCTACAGTTAATGCTGATTGTGTGTTGGTTCTCGTAGATGCATGTAAAGCGCCTGAAAAAATTGATGAAGTGTTGGAAGAAGCCATAGGAGGCCACAAAGATAAACCCCCCACTTTATTGATTATGAACAAGAAGGATCTTATCAAACCTGGTGAAGTTGCAAAGAAACTTGAGTGGTATACAAAATTTACTGATGTTGATGAGGTTATTCCAGTTAGTGCCAAGTATGGTCATGGGGTTGAAGATGTCAAGAACTGGATACTCTCAAAGCTTCCTAACGGACCAGCTTATTATCCAAAGGCATGTTTAAATCATATTGTATTTTTTGAATTTGTCTATCAAGATGCTGTGAGTGAGCATCCAGAAAGATTTTTTGTCGCTGAAATTGTTAGAGAGAAGATATTTTTGCAATATCGAAATGAAATCCCCTATGTGTGTCAGGTGAATGTTATAAGCTATAAGGCTCGACCAAATGCTAAAGATTTTATACAGGTGGAGATTTTGGTTGAGAGAAACTCGCAGAAAATTATCATTATTGGAAAAGAAGGAAAAACTTTAAAACTGCTTGCAACAGCTGCGCGTCTTGACGTTGAAGATTTTCTACAAAAAAAAGTTTTTCTAGAGATTAAAGTAAAGGTTAAAGAAAATTGGCGACAAGACGAAGGGTTTCTTAAGCACTCTGGTTATGGAGGTCAAATAGGTATTGTATGA

Protein sequence

>Msa1254990

MKNLLLRAPSPSTSTLPPTFQIQHSFFAVGFTTPTTFLHNRTESTPHLCCRTKHSPSKAFSTKQELFLLQQELDEDDEEIDDDTSFLSLSMKPDRNLGLLDDYETEELGYDCGPNHKSGYVALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRVLCICSGSDYQMVLYDTPGVLQEQRHKLDSMMMQNVRSATVNADCVLVLVDACKAPEKIDEVLEEAIGGHKDKPPTLLIMNKKDLIKPGEVAKKLEWYTKFTDVDEVIPVSAKYGHGVEDVKNWILSKLPNGPAYYPKACLNHIVFFEFVYQDAVSEHPERFFVAEIVREKIFLQYRNEIPYVCQVNVISYKARPNAKDFIQVEILVERNSQKIIIIGKEGKTLKLLATAARLDVEDFLQKKVFLEIKVKVKENWRQDEGFLKHSGYGGQIGIV*