AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518580 MtrunA17_Chr3g0130681 86.012 336 18 5 1 334 1 309 0.0 540
Msa0518580 MtrunA17_Chr8g0384691 57.576 231 76 2 105 333 117 327 2.28e-92 278
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518580 AT4G33480.1 65.532 235 58 4 103 334 121 335 3.85e-102 304

Find 86 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAGATGCATTCGTAATT+TGG 0.146385 3_4:-70391769 None:intergenic
GAAGAAGGAGAATGCTTCTT+TGG 0.277770 3_4:-70390268 None:intergenic
ATCCTGATGAAGAACTAAAA+TGG 0.282546 3_4:-70393714 None:intergenic
AACAAGAGTAATGGTGAAAT+TGG 0.297804 3_4:+70390346 Msa0518580:CDS
AAATTCAGTCTCTTCATCTA+TGG 0.303961 3_4:-70393509 None:intergenic
ACGAAACCAGCCGGTGGTTT+AGG 0.307214 3_4:-70390421 None:intergenic
AGAAGAATTGGAAATGGAAT+TGG 0.329446 3_4:-70390374 None:intergenic
AATTTGAGGCAGAGAAGAAT+TGG 0.329493 3_4:-70390386 None:intergenic
ATTGGAAGCGCTAGAGATAA+TGG 0.329827 3_4:-70390239 None:intergenic
ATCAGGATTGCCCCACTGTT+GGG 0.364007 3_4:+70393729 Msa0518580:three_prime_UTR
CGAATGCATCTGATTTATAG+TGG 0.365590 3_4:+70391777 Msa0518580:CDS
CAAGCTTCTTACTTCTTCAA+TGG 0.373400 3_4:+70390459 Msa0518580:CDS
TCCTGCGAACAACCTTCCTT+TGG 0.378943 3_4:+70390757 Msa0518580:CDS
AGGCAGAGAAGAATTGGAAA+TGG 0.386145 3_4:-70390380 None:intergenic
GTGCTCTGTAATATTTGTAT+AGG 0.414803 3_4:-70391093 None:intergenic
GGGAGCTGAGAAGGAAATAA+TGG 0.418161 3_4:-70393378 None:intergenic
CATCAGGATTGCCCCACTGT+TGG 0.420070 3_4:+70393728 Msa0518580:three_prime_UTR
TTCCTTTGGAATGCGTGATA+AGG 0.446204 3_4:+70390771 Msa0518580:CDS
TCCCCACTCATTACAGAGTC+TGG 0.452281 3_4:+70393355 Msa0518580:CDS
TTGTTTCTGGTGGATGAAGA+AGG 0.472935 3_4:-70390283 None:intergenic
AGATGGTAAAGATGATGGCT+TGG 0.488428 3_4:+70392434 Msa0518580:intron
TTGGAAGCGCTAGAGATAAT+GGG 0.489961 3_4:-70390238 None:intergenic
GACTGAATTTAATGCCTTGG+TGG 0.490843 3_4:+70393522 Msa0518580:CDS
AGAAATCACACACTTCAATC+AGG 0.494930 3_4:+70392470 Msa0518580:CDS
GCACTCCTTGACTCACTGTT+GGG 0.503400 3_4:+70393644 Msa0518580:CDS
GACATCTTTGACTTTCATGC+AGG 0.506567 3_4:+70391935 Msa0518580:CDS
GGTAGTGGCGTAGGAATTTG+AGG 0.510408 3_4:-70390400 None:intergenic
CGCACTCCTTGACTCACTGT+TGG 0.510918 3_4:+70393643 Msa0518580:CDS
GGAAAGGAAAATTGAAGTCT+CGG 0.511604 3_4:-70390148 None:intergenic
AAAACTTACTTCTAAAACAA+GGG 0.520997 3_4:-70396777 None:intergenic
GAAATACATGGGAGCTGAGA+AGG 0.521671 3_4:-70393387 None:intergenic
AGAGACTGAATTTAATGCCT+TGG 0.522159 3_4:+70393519 Msa0518580:CDS
GAAAGGAAAATTGAAGTCTC+GGG 0.522171 3_4:-70390147 None:intergenic
CCAGCCGGTGGTTTAGGTAG+TGG 0.522568 3_4:-70390415 None:intergenic
GCAAGTGCAAAAGAAGCAGC+AGG 0.531459 3_4:-70391747 None:intergenic
TTATCCTTGCAGGATCAGAA+TGG 0.536096 3_4:+70393298 Msa0518580:intron
ATGCTTCTTTGGTTGAACAT+TGG 0.536426 3_4:-70390257 None:intergenic
AGAACTAAAATGGAAACAGT+AGG 0.541288 3_4:-70393704 None:intergenic
AAATTGAAGTCTCGGGGAGG+AGG 0.544141 3_4:-70390140 None:intergenic
GGAGGAAGGATAAACATTCA+AGG 0.546652 3_4:-70390122 None:intergenic
AAGAATAACAACAAGAGTAA+TGG 0.549289 3_4:+70390337 Msa0518580:CDS
GGCCAGACTCTGTAATGAGT+GGG 0.549330 3_4:-70393357 None:intergenic
TCCAAAGGAAGGTTGTTCGC+AGG 0.550682 3_4:-70390758 None:intergenic
CTCCTTATCACGCATTCCAA+AGG 0.556000 3_4:-70390773 None:intergenic
GAGATAATGGGTTGAAAGCG+AGG 0.561102 3_4:-70390226 None:intergenic
GTCAGCACTCACTAAAACAA+GGG 0.563335 3_4:-70396735 None:intergenic
GAACTAAAATGGAAACAGTA+GGG 0.568044 3_4:-70393703 None:intergenic
AAATCGCTGATGATGTAAGT+AGG 0.570650 3_4:+70393329 Msa0518580:CDS
TGAAGTCTCGGGGAGGAGGA+AGG 0.572117 3_4:-70390136 None:intergenic
TTATGAACAGGAATTGCTTG+AGG 0.572765 3_4:+70393468 Msa0518580:intron
CATTTAACTTACATGTCAAG+TGG 0.573255 3_4:-70390839 None:intergenic
GAATGCATCTGATTTATAGT+GGG 0.573548 3_4:+70391778 Msa0518580:CDS
ATATTACAGAGCACAGGTGA+TGG 0.577846 3_4:+70391102 Msa0518580:CDS
CCACTACCTAAACCACCGGC+TGG 0.578308 3_4:+70390415 Msa0518580:CDS
TCTATGGCGCTAATGACAGC+AGG 0.580399 3_4:-70393493 None:intergenic
AGATAATGGGTTGAAAGCGA+GGG 0.583691 3_4:-70390225 None:intergenic
TTATCACGCATTCCAAAGGA+AGG 0.584077 3_4:-70390769 None:intergenic
TACAGAGCACAGGTGATGGA+TGG 0.592566 3_4:+70391106 Msa0518580:CDS
ATTTAACTTACATGTCAAGT+GGG 0.593365 3_4:-70390838 None:intergenic
AGATGATGGCTTGGCAACTG+AGG 0.596641 3_4:+70392443 Msa0518580:CDS
GGTTGATTGAGTGTTGAATG+AGG 0.602908 3_4:-70390169 None:intergenic
CTGCATTCAGACCCAACAGT+GGG 0.604290 3_4:-70393740 None:intergenic
TGTCAGCACTCACTAAAACA+AGG 0.612202 3_4:-70396736 None:intergenic
TGGCCAGACTCTGTAATGAG+TGG 0.615058 3_4:-70393358 None:intergenic
AACTAACAAGTGTGGCAAGT+CGG 0.615087 3_4:-70390483 None:intergenic
ATACAAATATTACAGAGCAC+AGG 0.618579 3_4:+70391096 Msa0518580:CDS
ATTGAGTGTTGAATGAGGAA+AGG 0.624056 3_4:-70390164 None:intergenic
TCATCTACGACGAAACCAGC+CGG 0.625755 3_4:-70390430 None:intergenic
GAAAACTTACTTCTAAAACA+AGG 0.631725 3_4:-70396778 None:intergenic
TACGCCACTACCTAAACCAC+CGG 0.633878 3_4:+70390411 Msa0518580:CDS
AAACTTACTTCTAAAACAAG+GGG 0.635311 3_4:-70396776 None:intergenic
GATGATGGCTTGGCAACTGA+GGG 0.636441 3_4:+70392444 Msa0518580:CDS
AGAATATTCACAAGTTCTCG+AGG 0.645145 3_4:+70390794 Msa0518580:CDS
GCCAGACTCTGTAATGAGTG+GGG 0.660010 3_4:-70393356 None:intergenic
GGTTTCGTCGTAGATGACAC+TGG 0.668620 3_4:+70390436 Msa0518580:CDS
AAATTCAAAACTAACAAGTG+TGG 0.670625 3_4:-70390491 None:intergenic
TCAGCACTCACTAAAACAAG+GGG 0.671652 3_4:-70396734 None:intergenic
AAAGGAAAATTGAAGTCTCG+GGG 0.671812 3_4:-70390146 None:intergenic
CAACAGTGAGTCAAGGAGTG+CGG 0.672482 3_4:-70393642 None:intergenic
AGTGAGAACGATGAGAAGCG+TGG 0.673004 3_4:-70390190 None:intergenic
GGTGGTTTAGGTAGTGGCGT+AGG 0.681302 3_4:-70390409 None:intergenic
GGAAAATTGAAGTCTCGGGG+AGG 0.715038 3_4:-70390143 None:intergenic
GATTAAATCACATACCACCA+AGG 0.720522 3_4:-70393536 None:intergenic
TGCATTCAGACCCAACAGTG+GGG 0.726533 3_4:-70393739 None:intergenic
TCTGCATTCAGACCCAACAG+TGG 0.735904 3_4:-70393741 None:intergenic
TCTACGACGAAACCAGCCGG+TGG 0.756646 3_4:-70390427 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATGAATATTATTGTT+AGG + chr3_4:70390730-70390749 Msa0518580:intron 10.0%
!!! TGTAAAATATTTTTTTTGTA+GGG - chr3_4:70392267-70392286 None:intergenic 10.0%
!!! TACAAAAAAAATATTTTACA+GGG + chr3_4:70392267-70392286 Msa0518580:intron 10.0%
!!! TGTTTTTAATGTTTAATTCA+TGG + chr3_4:70390860-70390879 Msa0518580:intron 15.0%
!!! TTTATATATCTAAGGTTTTA+GGG + chr3_4:70390899-70390918 Msa0518580:intron 15.0%
!! TATTTATTAACTTTAGATTG+TGG + chr3_4:70391055-70391074 Msa0518580:intron 15.0%
!!! ACCTTTTAAGTTTTAAAAAT+AGG + chr3_4:70391202-70391221 Msa0518580:intron 15.0%
!!! TCCTATTTTTAAAACTTAAA+AGG - chr3_4:70391206-70391225 None:intergenic 15.0%
!!! TTTATATATTCAAGGTTTTA+GGG + chr3_4:70391251-70391270 Msa0518580:intron 15.0%
!!! TTCTAAAGTCTATAAAAATA+AGG + chr3_4:70391465-70391484 Msa0518580:intron 15.0%
!!! CTGTAAAATATTTTTTTTGT+AGG - chr3_4:70392268-70392287 None:intergenic 15.0%
!!! CTACAAAAAAAATATTTTAC+AGG + chr3_4:70392266-70392285 Msa0518580:intron 15.0%
!! AAAACATATTAAATTAGATG+GGG - chr3_4:70392853-70392872 None:intergenic 15.0%
!! GAAAACATATTAAATTAGAT+GGG - chr3_4:70392854-70392873 None:intergenic 15.0%
!! AGAAAACATATTAAATTAGA+TGG - chr3_4:70392855-70392874 None:intergenic 15.0%
!!! TAATACTATTTGAAATAAAG+CGG + chr3_4:70392903-70392922 Msa0518580:intron 15.0%
!!! ACAATTATAGTATTGATAAT+AGG - chr3_4:70393947-70393966 None:intergenic 15.0%
!! TCACAAATGAAATTATAATA+CGG - chr3_4:70394195-70394214 None:intergenic 15.0%
!!! ACAATTATAGTATTGATAAT+AGG - chr3_4:70393947-70393966 None:intergenic 15.0%
!! ATGTAGAATTACAACAAAAA+TGG + chr3_4:70390084-70390103 Msa0518580:exon 20.0%
!!! TCTTATCATTGTTGTTTTTT+GGG - chr3_4:70390312-70390331 None:intergenic 20.0%
!!! TTCTTATCATTGTTGTTTTT+TGG - chr3_4:70390313-70390332 None:intergenic 20.0%
!!! ATTATGTATTTTTTCTGTTC+TGG + chr3_4:70390520-70390539 Msa0518580:intron 20.0%
!! GATTACAGTTTATATATCTA+AGG + chr3_4:70390891-70390910 Msa0518580:intron 20.0%
!!! GTTTATATATCTAAGGTTTT+AGG + chr3_4:70390898-70390917 Msa0518580:intron 20.0%
!!! TTATATATCTAAGGTTTTAG+GGG + chr3_4:70390900-70390919 Msa0518580:intron 20.0%
!!! GTTTATATATTCAAGGTTTT+AGG + chr3_4:70391250-70391269 Msa0518580:intron 20.0%
!!! TTATATATTCAAGGTTTTAG+GGG + chr3_4:70391252-70391271 Msa0518580:intron 20.0%
!! AAAGTCTATAAAAATAAGGA+TGG + chr3_4:70391469-70391488 Msa0518580:intron 20.0%
!! ATGTTATATTCAGATTATTG+TGG + chr3_4:70392027-70392046 Msa0518580:intron 20.0%
!!! TGTTGAGATTCTATATTTTA+TGG + chr3_4:70392084-70392103 Msa0518580:intron 20.0%
!!! GTTGAGATTCTATATTTTAT+GGG + chr3_4:70392085-70392104 Msa0518580:intron 20.0%
!! CAAAAAATTGTATATTTACC+AGG + chr3_4:70392296-70392315 Msa0518580:intron 20.0%
!! TTATCATACTCGTTATAATT+AGG + chr3_4:70392332-70392351 Msa0518580:intron 20.0%
!! TATCATACTCGTTATAATTA+GGG + chr3_4:70392333-70392352 Msa0518580:intron 20.0%
!! AGTTCAAAATTTAATTCTGT+TGG - chr3_4:70392732-70392751 None:intergenic 20.0%
!! AAACATATTAAATTAGATGG+GGG - chr3_4:70392852-70392871 None:intergenic 20.0%
!! CAATATAATACTAAATTCAC+AGG - chr3_4:70393214-70393233 None:intergenic 20.0%
!!! ATTATAGTATTGATAATAGG+TGG - chr3_4:70393944-70393963 None:intergenic 20.0%
!! AATTCTCATTGTTTCATATT+CGG + chr3_4:70394131-70394150 Msa0518580:intron 20.0%
!! TTGATTGAGTTTAAAGATTA+TGG + chr3_4:70394595-70394614 Msa0518580:intron 20.0%
!! TATGAGAATAGTAACATTAT+AGG - chr3_4:70394967-70394986 None:intergenic 20.0%
!!! AATTTTGTTGAAGTTTATGT+TGG + chr3_4:70395006-70395025 Msa0518580:intron 20.0%
!!! TTATAGAAGAGTTTTTGATT+TGG + chr3_4:70395069-70395088 Msa0518580:intron 20.0%
!!! TTTTGAGTTGGATTTTATAA+TGG + chr3_4:70395128-70395147 Msa0518580:intron 20.0%
!!! AGTTTTGAGAAAAATACTAT+TGG + chr3_4:70395295-70395314 Msa0518580:intron 20.0%
!! TTAACGCCAAAAAAATATAA+TGG - chr3_4:70395573-70395592 None:intergenic 20.0%
!! CAATAATACTTCAAATGTAT+AGG - chr3_4:70396290-70396309 None:intergenic 20.0%
!!! ATTATAGTATTGATAATAGG+TGG - chr3_4:70393944-70393963 None:intergenic 20.0%
!! AAAATATATGTTGAGAAACA+TGG - chr3_4:70396676-70396695 None:intergenic 20.0%
!!! AAAACTTACTTCTAAAACAA+GGG - chr3_4:70396780-70396799 None:intergenic 20.0%
! TAGAATTACAACAAAAATGG+CGG + chr3_4:70390087-70390106 Msa0518580:exon 25.0%
! AAGAATAACAACAAGAGTAA+TGG + chr3_4:70390337-70390356 Msa0518580:CDS 25.0%
! AAATTCAAAACTAACAAGTG+TGG - chr3_4:70390494-70390513 None:intergenic 25.0%
!! TTTGGTAATTATGATTTGAC+AGG + chr3_4:70390654-70390673 Msa0518580:intron 25.0%
!! ATTTAACTTACATGTCAAGT+GGG - chr3_4:70390841-70390860 None:intergenic 25.0%
! AAAAAAGATTATCAAAACCC+TGG - chr3_4:70391029-70391048 None:intergenic 25.0%
! TCATTGCTGACAATTTAAAT+AGG + chr3_4:70391179-70391198 Msa0518580:intron 25.0%
! GACAATTTCTTGTATGATTA+CGG + chr3_4:70391228-70391247 Msa0518580:intron 25.0%
! GATTACGGTTTATATATTCA+AGG + chr3_4:70391243-70391262 Msa0518580:intron 25.0%
!! TATAAAAGGAGTGTACAAAA+TGG - chr3_4:70391297-70391316 None:intergenic 25.0%
!! CACTAAAGTCAAAATTGTTT+TGG - chr3_4:70391352-70391371 None:intergenic 25.0%
!!! CTTTAGAACTTTATATGCAA+TGG - chr3_4:70391453-70391472 None:intergenic 25.0%
!!! AAAATAAGGATGGTTTTGTA+AGG + chr3_4:70391479-70391498 Msa0518580:intron 25.0%
! GACAACCTAAATTAAAACTT+CGG + chr3_4:70391507-70391526 Msa0518580:intron 25.0%
!!! ATTTGCCGAAGTTTTAATTT+AGG - chr3_4:70391515-70391534 None:intergenic 25.0%
! TAAACGACTACAAAAACAAA+AGG - chr3_4:70391652-70391671 None:intergenic 25.0%
!! TGTTTTCTTTCCATGTTTTT+AGG + chr3_4:70391695-70391714 Msa0518580:intron 25.0%
!! CTAAAAGCTTGAAATTTGTT+TGG + chr3_4:70392154-70392173 Msa0518580:intron 25.0%
!!! GATAAATATGTTTTTAGTCC+TGG - chr3_4:70392317-70392336 None:intergenic 25.0%
!! AACATCAGCCATTAAATTTT+GGG - chr3_4:70392403-70392422 None:intergenic 25.0%
!! AAACATCAGCCATTAAATTT+TGG - chr3_4:70392404-70392423 None:intergenic 25.0%
!!! GATGTTTTCCATTTTTTAGA+TGG + chr3_4:70392417-70392436 Msa0518580:intron 25.0%
! CATCTTTACCATCTAAAAAA+TGG - chr3_4:70392428-70392447 None:intergenic 25.0%
!! TTTTTAGATGGTAAAGATGA+TGG + chr3_4:70392429-70392448 Msa0518580:intron 25.0%
!! TAAAAATTAGCTTACTTCGT+TGG + chr3_4:70392645-70392664 Msa0518580:intron 25.0%
!!! AATACTGATTCATAGAAGAA+AGG - chr3_4:70392702-70392721 None:intergenic 25.0%
!!! CTCCTACATTTTTTTCTAAT+TGG + chr3_4:70393138-70393157 Msa0518580:intron 25.0%
! TGCCAATTAGAAAAAAATGT+AGG - chr3_4:70393143-70393162 None:intergenic 25.0%
!! AAATCAAATGCATTTTACAG+TGG + chr3_4:70393168-70393187 Msa0518580:intron 25.0%
!! AATAAATAAACTGTGGATTG+TGG - chr3_4:70393240-70393259 None:intergenic 25.0%
! ACAATCCACAGTTTATTTAT+TGG + chr3_4:70393239-70393258 Msa0518580:intron 25.0%
!! GCTAATTTCATTTTATGAAC+AGG + chr3_4:70393456-70393475 Msa0518580:intron 25.0%
!! TCCAAAGTAACATTTTTCTT+TGG + chr3_4:70393560-70393579 Msa0518580:intron 25.0%
!! ACCAAAGAAAAATGTTACTT+TGG - chr3_4:70393564-70393583 None:intergenic 25.0%
!!! TACTCATTTTAGAGTTAGTT+AGG + chr3_4:70393849-70393868 Msa0518580:intron 25.0%
! AAACCCTAGAAATTGAAATT+GGG - chr3_4:70394283-70394302 None:intergenic 25.0%
!! ATCATTCTTCCTTTAATTTC+TGG + chr3_4:70394326-70394345 Msa0518580:intron 25.0%
! AAACTGAATCCAGAAATTAA+AGG - chr3_4:70394338-70394357 None:intergenic 25.0%
! AAAAAACTCGAGCAATAAAA+AGG - chr3_4:70394369-70394388 None:intergenic 25.0%
!! TTTTTCTCAAAACTTCAACT+CGG - chr3_4:70395289-70395308 None:intergenic 25.0%
!!! TTTTGTTGCTTTATCTCTAA+TGG + chr3_4:70395398-70395417 Msa0518580:intron 25.0%
!!! AGTGCTTCATTGTTTTAATT+AGG + chr3_4:70395462-70395481 Msa0518580:intron 25.0%
! TCATCATCAAATCTACATAT+TGG - chr3_4:70395719-70395738 None:intergenic 25.0%
! AAATCAATAAAGCCAACAAA+GGG - chr3_4:70395902-70395921 None:intergenic 25.0%
! AAAATCAATAAAGCCAACAA+AGG - chr3_4:70395903-70395922 None:intergenic 25.0%
!! ACATTTGAAGTATTATTGAG+TGG + chr3_4:70396292-70396311 Msa0518580:intron 25.0%
!!! TACTCATTTTAGAGTTAGTT+AGG + chr3_4:70393849-70393868 Msa0518580:intron 25.0%
!!! CATATATTTTAGTATGATCG+AGG + chr3_4:70396686-70396705 Msa0518580:intron 25.0%
!!! TGGAACAGTTAGTTTTATTA+TGG + chr3_4:70396711-70396730 Msa0518580:three_prime_UTR 25.0%
!!! AAACTTACTTCTAAAACAAG+GGG - chr3_4:70396779-70396798 None:intergenic 25.0%
!!! GAAAACTTACTTCTAAAACA+AGG - chr3_4:70396781-70396800 None:intergenic 25.0%
!!! GTTTTTTGGGTTTTTGTTTC+TGG - chr3_4:70390299-70390318 None:intergenic 30.0%
AACAAGAGTAATGGTGAAAT+TGG + chr3_4:70390346-70390365 Msa0518580:CDS 30.0%
AGAAGAATTGGAAATGGAAT+TGG - chr3_4:70390377-70390396 None:intergenic 30.0%
TATGAATCGAATTATGCAAG+TGG + chr3_4:70390583-70390602 Msa0518580:intron 30.0%
TGACGATTTCTGTTATGTTA+AGG + chr3_4:70390624-70390643 Msa0518580:intron 30.0%
TTATGTTAAGGCACAATCTT+TGG + chr3_4:70390636-70390655 Msa0518580:intron 30.0%
TTTGACAGGAATATTATTGC+AGG + chr3_4:70390668-70390687 Msa0518580:intron 30.0%
TTGACAGGAATATTATTGCA+GGG + chr3_4:70390669-70390688 Msa0518580:intron 30.0%
! CATTTAACTTACATGTCAAG+TGG - chr3_4:70390842-70390861 None:intergenic 30.0%
CGGTTTCTAAATCATATGTA+TGG + chr3_4:70390932-70390951 Msa0518580:intron 30.0%
! GATTGTGGAATTTTTACTAC+AGG + chr3_4:70391070-70391089 Msa0518580:intron 30.0%
GTGCTCTGTAATATTTGTAT+AGG - chr3_4:70391096-70391115 None:intergenic 30.0%
ATACAAATATTACAGAGCAC+AGG + chr3_4:70391096-70391115 Msa0518580:CDS 30.0%
CTGATACTTCAACTACAAAA+TGG - chr3_4:70391146-70391165 None:intergenic 30.0%
TTGTACAGCTGTACTATAAA+AGG - chr3_4:70391311-70391330 None:intergenic 30.0%
AGAACTTTATATGCAATGGT+TGG - chr3_4:70391449-70391468 None:intergenic 30.0%
AATCAGATGCATTCGTAATT+TGG - chr3_4:70391772-70391791 None:intergenic 30.0%
GAATGCATCTGATTTATAGT+GGG + chr3_4:70391778-70391797 Msa0518580:CDS 30.0%
! AGATTTTATAGCTCACAACA+TGG + chr3_4:70392051-70392070 Msa0518580:intron 30.0%
TGCTTCATAACCATTTGAAT+TGG + chr3_4:70392374-70392393 Msa0518580:intron 30.0%
ATTGGACACCCAAAATTTAA+TGG + chr3_4:70392392-70392411 Msa0518580:intron 30.0%
AGTATACCAATGCAAATTTG+AGG - chr3_4:70392608-70392627 None:intergenic 30.0%
AAAGGAAAGCAAACATGATT+GGG - chr3_4:70392684-70392703 None:intergenic 30.0%
! ACTATTTGAAATAAAGCGGA+TGG + chr3_4:70392907-70392926 Msa0518580:intron 30.0%
! ACTTATTGGAATTTTGTTGC+AGG + chr3_4:70392932-70392951 Msa0518580:intron 30.0%
TCTAACAAACTTGAATATGG+AGG - chr3_4:70393022-70393041 None:intergenic 30.0%
TGCTCTAACAAACTTGAATA+TGG - chr3_4:70393025-70393044 None:intergenic 30.0%
! CAAATGCATTTTATAGTGAC+CGG + chr3_4:70393104-70393123 Msa0518580:intron 30.0%
CATGTCCAATAAATAAACTG+TGG - chr3_4:70393247-70393266 None:intergenic 30.0%
GATCATAAATTTATCCTTGC+AGG + chr3_4:70393288-70393307 Msa0518580:intron 30.0%
TACACTGATCAGAAATACAT+GGG - chr3_4:70393401-70393420 None:intergenic 30.0%
TTACACTGATCAGAAATACA+TGG - chr3_4:70393402-70393421 None:intergenic 30.0%
! ATGTATTTCTGATCAGTGTA+AGG + chr3_4:70393401-70393420 Msa0518580:intron 30.0%
! TGTATTTCTGATCAGTGTAA+GGG + chr3_4:70393402-70393421 Msa0518580:intron 30.0%
AAATGAAATTAGCGACACAA+GGG - chr3_4:70393449-70393468 None:intergenic 30.0%
AAAATGAAATTAGCGACACA+AGG - chr3_4:70393450-70393469 None:intergenic 30.0%
AAATTCAGTCTCTTCATCTA+TGG - chr3_4:70393512-70393531 None:intergenic 30.0%
GAACTAAAATGGAAACAGTA+GGG - chr3_4:70393706-70393725 None:intergenic 30.0%
AGAACTAAAATGGAAACAGT+AGG - chr3_4:70393707-70393726 None:intergenic 30.0%
!!! TTCCATTTTAGTTCTTCATC+AGG + chr3_4:70393712-70393731 Msa0518580:three_prime_UTR 30.0%
ATCCTGATGAAGAACTAAAA+TGG - chr3_4:70393717-70393736 None:intergenic 30.0%
!! GCTTTTTCTCTCTATTTTCA+TGG + chr3_4:70393971-70393990 Msa0518580:intron 30.0%
! CATTTGTGATTCTCTTGTTT+CGG + chr3_4:70394206-70394225 Msa0518580:intron 30.0%
AGAAATTGAAATTGGGGAAA+AGG - chr3_4:70394276-70394295 None:intergenic 30.0%
TTTCCCCAATTTCAATTTCT+AGG + chr3_4:70394276-70394295 Msa0518580:intron 30.0%
TTCCCCAATTTCAATTTCTA+GGG + chr3_4:70394277-70394296 Msa0518580:intron 30.0%
AACCCTAGAAATTGAAATTG+GGG - chr3_4:70394282-70394301 None:intergenic 30.0%
GAAACCCTAGAAATTGAAAT+TGG - chr3_4:70394284-70394303 None:intergenic 30.0%
TTAAAGGAAGAATGATCGAT+TGG - chr3_4:70394322-70394341 None:intergenic 30.0%
ATAGAACATGAAAGTGAATC+AGG - chr3_4:70394411-70394430 None:intergenic 30.0%
TGAAAGAGGAATCACAAAAT+GGG - chr3_4:70394442-70394461 None:intergenic 30.0%
ATGAAAGAGGAATCACAAAA+TGG - chr3_4:70394443-70394462 None:intergenic 30.0%
TCATGTTATTCCCAAATACT+AGG + chr3_4:70394568-70394587 Msa0518580:intron 30.0%
CATGTTATTCCCAAATACTA+GGG + chr3_4:70394569-70394588 Msa0518580:intron 30.0%
AATCAAGAACCCTAGTATTT+GGG - chr3_4:70394581-70394600 None:intergenic 30.0%
! TTGGAATTGTTGAGTATTGT+TGG + chr3_4:70395025-70395044 Msa0518580:intron 30.0%
! TGGAATTGTTGAGTATTGTT+GGG + chr3_4:70395026-70395045 Msa0518580:intron 30.0%
! GTTGGATTTTATAATGGTTG+TGG + chr3_4:70395134-70395153 Msa0518580:intron 30.0%
TTAGTGTTGCATCACAATTT+AGG + chr3_4:70395207-70395226 Msa0518580:intron 30.0%
!!! AGGTTGGTTTTATTTGAATG+AGG + chr3_4:70395227-70395246 Msa0518580:intron 30.0%
!!! GCTTCATTGTTTTAATTAGG+TGG + chr3_4:70395465-70395484 Msa0518580:intron 30.0%
AAAAAATATAATGGCAGCAG+AGG - chr3_4:70395564-70395583 None:intergenic 30.0%
!!! CTGCTGCCATTATATTTTTT+TGG + chr3_4:70395564-70395583 Msa0518580:intron 30.0%
!! TGTGTTTGTTGATTTGATGA+TGG + chr3_4:70395686-70395705 Msa0518580:intron 30.0%
!! TTGATGATGATTAGCCTTAT+TGG + chr3_4:70395729-70395748 Msa0518580:intron 30.0%
!!! TGATTTTAGCTTCTGTTAAG+TGG + chr3_4:70395916-70395935 Msa0518580:intron 30.0%
AACAGAAGCTAAGATCAATA+AGG - chr3_4:70395997-70396016 None:intergenic 30.0%
TTGATACTCTTATACTGTGT+TGG + chr3_4:70396138-70396157 Msa0518580:intron 30.0%
!! GCTTTTTCTCTCTATTTTCA+TGG + chr3_4:70393971-70393990 Msa0518580:intron 30.0%
AAAGGAAAATTGAAGTCTCG+GGG - chr3_4:70390149-70390168 None:intergenic 35.0%
GAAAGGAAAATTGAAGTCTC+GGG - chr3_4:70390150-70390169 None:intergenic 35.0%
GGAAAGGAAAATTGAAGTCT+CGG - chr3_4:70390151-70390170 None:intergenic 35.0%
!! ATTGAGTGTTGAATGAGGAA+AGG - chr3_4:70390167-70390186 None:intergenic 35.0%
ATGCTTCTTTGGTTGAACAT+TGG - chr3_4:70390260-70390279 None:intergenic 35.0%
!!! TTTTGGGTTTTTGTTTCTGG+TGG - chr3_4:70390296-70390315 None:intergenic 35.0%
! AATTTGAGGCAGAGAAGAAT+TGG - chr3_4:70390389-70390408 None:intergenic 35.0%
CAAGCTTCTTACTTCTTCAA+TGG + chr3_4:70390459-70390478 Msa0518580:CDS 35.0%
AGAATATTCACAAGTTCTCG+AGG + chr3_4:70390794-70390813 Msa0518580:CDS 35.0%
CATCAGAGAGATTTCACATT+GGG - chr3_4:70390968-70390987 None:intergenic 35.0%
TCATCAGAGAGATTTCACAT+TGG - chr3_4:70390969-70390988 None:intergenic 35.0%
GTGAAATCTCTCTGATGATT+TGG + chr3_4:70390971-70390990 Msa0518580:intron 35.0%
!!! TGGATTTTTAGCGTAGTGTT+GGG - chr3_4:70391009-70391028 None:intergenic 35.0%
AACACTACGCTAAAAATCCA+GGG + chr3_4:70391009-70391028 Msa0518580:intron 35.0%
TTCGGCAAATCTTCATGAAA+TGG + chr3_4:70391525-70391544 Msa0518580:intron 35.0%
! TTTTCCCATTAGCTAGGTTT+GGG - chr3_4:70391628-70391647 None:intergenic 35.0%
! ATTTTCCCATTAGCTAGGTT+TGG - chr3_4:70391629-70391648 None:intergenic 35.0%
! AAAGGATTTTCCCATTAGCT+AGG - chr3_4:70391634-70391653 None:intergenic 35.0%
TCGTAACTGACCTAAAAACA+TGG - chr3_4:70391708-70391727 None:intergenic 35.0%
!!! ATGTTTTTAGGTCAGTTACG+AGG + chr3_4:70391707-70391726 Msa0518580:intron 35.0%
CGAATGCATCTGATTTATAG+TGG + chr3_4:70391777-70391796 Msa0518580:CDS 35.0%
CATGAGAAAAGACTGACATA+TGG - chr3_4:70391808-70391827 None:intergenic 35.0%
!!! CATCTTTTTTGTTTGTCCTC+TGG - chr3_4:70392010-70392029 None:intergenic 35.0%
AGCGAGGTGAATAAATAGAA+GGG - chr3_4:70392202-70392221 None:intergenic 35.0%
AAGCGAGGTGAATAAATAGA+AGG - chr3_4:70392203-70392222 None:intergenic 35.0%
TCTATTTATTCACCTCGCTT+TGG + chr3_4:70392203-70392222 Msa0518580:intron 35.0%
!! TTTTGGGTGTCCAATTCAAA+TGG - chr3_4:70392387-70392406 None:intergenic 35.0%
AGAAATCACACACTTCAATC+AGG + chr3_4:70392470-70392489 Msa0518580:CDS 35.0%
GATTACCTAATTGAACTGTG+AGG - chr3_4:70392541-70392560 None:intergenic 35.0%
CTACATCCTCAAATTTGCAT+TGG + chr3_4:70392599-70392618 Msa0518580:intron 35.0%
! AATTAGCTTACTTCGTTGGA+TGG + chr3_4:70392649-70392668 Msa0518580:intron 35.0%
GAAAGGAAAGCAAACATGAT+TGG - chr3_4:70392685-70392704 None:intergenic 35.0%
TAAAGCGGATGGTAACTTAT+TGG + chr3_4:70392918-70392937 Msa0518580:intron 35.0%
GAGAAAATGTCACAGGTAAA+TGG - chr3_4:70393079-70393098 None:intergenic 35.0%
CGGTCACTATAAAATGCATT+TGG - chr3_4:70393106-70393125 None:intergenic 35.0%
!! TGTAGGAGTACTTCAATTTC+CGG - chr3_4:70393126-70393145 None:intergenic 35.0%
! AAATCGCTGATGATGTAAGT+AGG + chr3_4:70393329-70393348 Msa0518580:CDS 35.0%
TTATGAACAGGAATTGCTTG+AGG + chr3_4:70393468-70393487 Msa0518580:intron 35.0%
AGAGACTGAATTTAATGCCT+TGG + chr3_4:70393519-70393538 Msa0518580:CDS 35.0%
GATTAAATCACATACCACCA+AGG - chr3_4:70393539-70393558 None:intergenic 35.0%
GGAAAACATACAGAAATGAG+TGG - chr3_4:70393601-70393620 None:intergenic 35.0%
TGATACCATGTTGAGAAACA+TGG - chr3_4:70394000-70394019 None:intergenic 35.0%
CATGAAAGTGAATCAGGAAT+TGG - chr3_4:70394405-70394424 None:intergenic 35.0%
ACACAAGATGAAGATGAAAG+AGG - chr3_4:70394456-70394475 None:intergenic 35.0%
CAATCAAGAACCCTAGTATT+TGG - chr3_4:70394582-70394601 None:intergenic 35.0%
!! GTTTACTGATTTCAGTGTTG+CGG + chr3_4:70394646-70394665 Msa0518580:intron 35.0%
! TTCACCATCAATTTGCTTTG+AGG + chr3_4:70394704-70394723 Msa0518580:intron 35.0%
CAAACCTCAAAGCAAATTGA+TGG - chr3_4:70394711-70394730 None:intergenic 35.0%
! TGTTGATGAGATTGTAGTTG+CGG + chr3_4:70394755-70394774 Msa0518580:intron 35.0%
!! TGTTCTAGGTTCAGTTTTCT+TGG + chr3_4:70394788-70394807 Msa0518580:intron 35.0%
TCAACTGTGTGATTACACAT+TGG + chr3_4:70394904-70394923 Msa0518580:intron 35.0%
ACTCTTCTATAAACATGCAG+CGG - chr3_4:70395061-70395080 None:intergenic 35.0%
!!! CATAGAAGACGTTTTTGAGT+TGG + chr3_4:70395116-70395135 Msa0518580:intron 35.0%
TGTTGCATCACAATTTAGGT+TGG + chr3_4:70395211-70395230 Msa0518580:intron 35.0%
TTGATTGAGAGCAACTAATG+TGG - chr3_4:70395429-70395448 None:intergenic 35.0%
ATTAGTTGCTCTCAATCAAG+TGG + chr3_4:70395430-70395449 Msa0518580:intron 35.0%
! TTGTTACTGATTGGTGTGTA+TGG + chr3_4:70395492-70395511 Msa0518580:intron 35.0%
! TGTTACTGATTGGTGTGTAT+GGG + chr3_4:70395493-70395512 Msa0518580:intron 35.0%
!! TTGCCTTTGTTTGGTGTATA+TGG + chr3_4:70395641-70395660 Msa0518580:intron 35.0%
!! TGCCTTTGTTTGGTGTATAT+GGG + chr3_4:70395642-70395661 Msa0518580:intron 35.0%
TACCCATATACACCAAACAA+AGG - chr3_4:70395647-70395666 None:intergenic 35.0%
CATAATGCTTAACCACCATA+GGG - chr3_4:70395879-70395898 None:intergenic 35.0%
TTAAGCATTATGCCCTTTGT+TGG + chr3_4:70395887-70395906 Msa0518580:intron 35.0%
! TTAAGCATTTTGCCCTTTGT+TGG + chr3_4:70395971-70395990 Msa0518580:intron 35.0%
AGATCAATAAGGCCAACAAA+GGG - chr3_4:70395986-70396005 None:intergenic 35.0%
AAGATCAATAAGGCCAACAA+AGG - chr3_4:70395987-70396006 None:intergenic 35.0%
TGATCTTAGCTTCTGTTAAG+TGG + chr3_4:70396000-70396019 Msa0518580:intron 35.0%
TGGTTAAGCATTTCTCTCTA+TGG + chr3_4:70396052-70396071 Msa0518580:intron 35.0%
! ATTGTTTGGATATGGTCTTG+TGG + chr3_4:70396110-70396129 Msa0518580:intron 35.0%
ATACTCTTATACTGTGTTGG+AGG + chr3_4:70396141-70396160 Msa0518580:intron 35.0%
TACTCTTATACTGTGTTGGA+GGG + chr3_4:70396142-70396161 Msa0518580:intron 35.0%
CATCAATTGCAGAGACTATT+TGG + chr3_4:70396318-70396337 Msa0518580:intron 35.0%
TGCTCTTCAATCTTCATACA+AGG - chr3_4:70396369-70396388 None:intergenic 35.0%
TTCTCTTACCTTGAGTTTGA+GGG + chr3_4:70396478-70396497 Msa0518580:intron 35.0%
!! ATTTTAGTATGATCGAGGAC+TGG + chr3_4:70396691-70396710 Msa0518580:three_prime_UTR 35.0%
GGAGGAAGGATAAACATTCA+AGG - chr3_4:70390125-70390144 None:intergenic 40.0%
!! GGTTGATTGAGTGTTGAATG+AGG - chr3_4:70390172-70390191 None:intergenic 40.0%
!! AGATAATGGGTTGAAAGCGA+GGG - chr3_4:70390228-70390247 None:intergenic 40.0%
!! TTGGAAGCGCTAGAGATAAT+GGG - chr3_4:70390241-70390260 None:intergenic 40.0%
!! ATTGGAAGCGCTAGAGATAA+TGG - chr3_4:70390242-70390261 None:intergenic 40.0%
GAAGAAGGAGAATGCTTCTT+TGG - chr3_4:70390271-70390290 None:intergenic 40.0%
!! TTGTTTCTGGTGGATGAAGA+AGG - chr3_4:70390286-70390305 None:intergenic 40.0%
AGGCAGAGAAGAATTGGAAA+TGG - chr3_4:70390383-70390402 None:intergenic 40.0%
AACTAACAAGTGTGGCAAGT+CGG - chr3_4:70390486-70390505 None:intergenic 40.0%
TTATCACGCATTCCAAAGGA+AGG - chr3_4:70390772-70390791 None:intergenic 40.0%
!! TTCCTTTGGAATGCGTGATA+AGG + chr3_4:70390771-70390790 Msa0518580:CDS 40.0%
!!! CTGGATTTTTAGCGTAGTGT+TGG - chr3_4:70391010-70391029 None:intergenic 40.0%
CAACACTACGCTAAAAATCC+AGG + chr3_4:70391008-70391027 Msa0518580:intron 40.0%
ATATTACAGAGCACAGGTGA+TGG + chr3_4:70391102-70391121 Msa0518580:CDS 40.0%
AGCATGGCATAGACATAGTA+GGG - chr3_4:70391420-70391439 None:intergenic 40.0%
AAGCATGGCATAGACATAGT+AGG - chr3_4:70391421-70391440 None:intergenic 40.0%
ATGTACCCAAACCTAGCTAA+TGG + chr3_4:70391620-70391639 Msa0518580:intron 40.0%
TGTACCCAAACCTAGCTAAT+GGG + chr3_4:70391621-70391640 Msa0518580:intron 40.0%
! GACATCTTTGACTTTCATGC+AGG + chr3_4:70391935-70391954 Msa0518580:CDS 40.0%
GTTCTAACTTCTAACACCAG+AGG + chr3_4:70391991-70392010 Msa0518580:intron 40.0%
GGTGAATAAATAGAAGGGAC+AGG - chr3_4:70392197-70392216 None:intergenic 40.0%
! AGATGGTAAAGATGATGGCT+TGG + chr3_4:70392434-70392453 Msa0518580:intron 40.0%
ACAAAAAGCAGTGGATCAGA+TGG - chr3_4:70392984-70393003 None:intergenic 40.0%
CTATTGCCTCTGTTAAACAG+TGG + chr3_4:70393046-70393065 Msa0518580:intron 40.0%
TGGTAGAGAGAAAATGTCAC+AGG - chr3_4:70393086-70393105 None:intergenic 40.0%
!! TATGATCAGCTCTAGAACAC+TGG - chr3_4:70393275-70393294 None:intergenic 40.0%
TTATCCTTGCAGGATCAGAA+TGG + chr3_4:70393298-70393317 Msa0518580:intron 40.0%
GACTGAATTTAATGCCTTGG+TGG + chr3_4:70393522-70393541 Msa0518580:CDS 40.0%
! GTATGTTTTCCCTTACACAC+AGG + chr3_4:70393610-70393629 Msa0518580:intron 40.0%
! TTTTACCCAACAGTGAGTCA+AGG - chr3_4:70393652-70393671 None:intergenic 40.0%
!! GTCTGAATGCAGAGTTTTGT+GGG + chr3_4:70393751-70393770 Msa0518580:three_prime_UTR 40.0%
ACATGGTATCAGAGCATGAT+TGG + chr3_4:70394009-70394028 Msa0518580:intron 40.0%
CAGCGGAAAAAAAATCAAGG+TGG - chr3_4:70394038-70394057 None:intergenic 40.0%
GTGCAGCGGAAAAAAAATCA+AGG - chr3_4:70394041-70394060 None:intergenic 40.0%
CAAAACCGAGGACAAAGAAA+GGG - chr3_4:70394160-70394179 None:intergenic 40.0%
ACAAAACCGAGGACAAAGAA+AGG - chr3_4:70394161-70394180 None:intergenic 40.0%
ATCGAACGAAAACAAAACCG+AGG - chr3_4:70394172-70394191 None:intergenic 40.0%
GAAGAATGATCGATTGGAGA+AGG - chr3_4:70394316-70394335 None:intergenic 40.0%
! GTTGATGAGATTGTAGTTGC+GGG + chr3_4:70394756-70394775 Msa0518580:intron 40.0%
! GTTTTCTTGGTTCACTGTTG+TGG + chr3_4:70394801-70394820 Msa0518580:intron 40.0%
AGCTTGGATGATGATTCTTG+AGG + chr3_4:70394832-70394851 Msa0518580:intron 40.0%
TACCTTGCACAATCTGAGTT+CGG + chr3_4:70394869-70394888 Msa0518580:intron 40.0%
CTCTTCTATAAACATGCAGC+GGG - chr3_4:70395060-70395079 None:intergenic 40.0%
!! GTTTTGTTGCAGCCAATATG+TGG + chr3_4:70395249-70395268 Msa0518580:intron 40.0%
ACACTGCTATAGCCACATAT+TGG - chr3_4:70395264-70395283 None:intergenic 40.0%
!! GGTGGTTTGTTGTTACTGAT+TGG + chr3_4:70395483-70395502 Msa0518580:intron 40.0%
!! ATGGCTTTGTTGCCTTTGTT+TGG + chr3_4:70395632-70395651 Msa0518580:intron 40.0%
!! GATTAGCCTTATTGGCTTTG+TGG + chr3_4:70395737-70395756 Msa0518580:intron 40.0%
! TTATGTTAGCTTCTGCCCTA+TGG + chr3_4:70395816-70395835 Msa0518580:intron 40.0%
!! AAGAGTGCTTAACCACCATA+GGG - chr3_4:70395834-70395853 None:intergenic 40.0%
GCATAATGCTTAACCACCAT+AGG - chr3_4:70395880-70395899 None:intergenic 40.0%
TCTGTTAAGTGGTTAAGCCT+TGG + chr3_4:70395927-70395946 Msa0518580:intron 40.0%
GTCTGGACATTGTTTGGATA+TGG + chr3_4:70396102-70396121 Msa0518580:intron 40.0%
ACTCTTATACTGTGTTGGAG+GGG + chr3_4:70396143-70396162 Msa0518580:intron 40.0%
ATAGCACTCACAAACGACAA+AGG - chr3_4:70396192-70396211 None:intergenic 40.0%
ATGAACATCCACTCCATAAC+AGG - chr3_4:70396244-70396263 None:intergenic 40.0%
CTTCATACAAGGAACGTTGA+AGG - chr3_4:70396358-70396377 None:intergenic 40.0%
ATTGAAGAGCAACCTCTGTT+TGG + chr3_4:70396378-70396397 Msa0518580:intron 40.0%
AAGAGAAAGCTTCCAAACAG+AGG - chr3_4:70396393-70396412 None:intergenic 40.0%
GTTCTCTTACCTTGAGTTTG+AGG + chr3_4:70396477-70396496 Msa0518580:intron 40.0%
TCAGCACTCACTAAAACAAG+GGG - chr3_4:70396737-70396756 None:intergenic 40.0%
GTCAGCACTCACTAAAACAA+GGG - chr3_4:70396738-70396757 None:intergenic 40.0%
TGTCAGCACTCACTAAAACA+AGG - chr3_4:70396739-70396758 None:intergenic 40.0%
!!! TTGTTTTAGTGAGTGCTGAC+AGG + chr3_4:70396738-70396757 Msa0518580:three_prime_UTR 40.0%
!! GAGATAATGGGTTGAAAGCG+AGG - chr3_4:70390229-70390248 None:intergenic 45.0%
TCGAATTATGCAAGTGGCTG+TGG + chr3_4:70390589-70390608 Msa0518580:intron 45.0%
CTCCTTATCACGCATTCCAA+AGG - chr3_4:70390776-70390795 None:intergenic 45.0%
!!! GGTTTTAGGGGTGAAAGAAG+TGG + chr3_4:70391264-70391283 Msa0518580:intron 45.0%
! AGATACTGTTTTACCGCTCG+TGG + chr3_4:70391890-70391909 Msa0518580:intron 45.0%
CGCATCCTCACAGTTCAATT+AGG + chr3_4:70392533-70392552 Msa0518580:intron 45.0%
TTAGATGGGGGAAAATGCAC+AGG - chr3_4:70392840-70392859 None:intergenic 45.0%
TTTGCAGCGACAAAAAGCAG+TGG - chr3_4:70392993-70393012 None:intergenic 45.0%
!!! ACTGCTTTTTGTCGCTGCAA+AGG + chr3_4:70392992-70393011 Msa0518580:CDS 45.0%
GTGATGCCACTGTTTAACAG+AGG - chr3_4:70393055-70393074 None:intergenic 45.0%
CATTCCATTCTGATCCTGCA+AGG - chr3_4:70393305-70393324 None:intergenic 45.0%
GGGAGCTGAGAAGGAAATAA+TGG - chr3_4:70393381-70393400 None:intergenic 45.0%
GAAATACATGGGAGCTGAGA+AGG - chr3_4:70393390-70393409 None:intergenic 45.0%
! TGTTTTCCCTTACACACAGG+AGG + chr3_4:70393613-70393632 Msa0518580:intron 45.0%
CTTCTTCCTCCTGTGTGTAA+GGG - chr3_4:70393622-70393641 None:intergenic 45.0%
! GGTCTGAATGCAGAGTTTTG+TGG + chr3_4:70393750-70393769 Msa0518580:three_prime_UTR 45.0%
GGATGCCATGTTTCTCAACA+TGG + chr3_4:70393992-70394011 Msa0518580:intron 45.0%
GGTTTCCCTTTCTTTGTCCT+CGG + chr3_4:70394152-70394171 Msa0518580:intron 45.0%
! ACTGATTTCAGTGTTGCGGT+TGG + chr3_4:70394650-70394669 Msa0518580:intron 45.0%
!!! TCAGTGTTGCGGTTGGTTTT+CGG + chr3_4:70394657-70394676 Msa0518580:intron 45.0%
CTTGGTTCACTGTTGTGGTT+TGG + chr3_4:70394806-70394825 Msa0518580:intron 45.0%
AACCGAACTCAGATTGTGCA+AGG - chr3_4:70394874-70394893 None:intergenic 45.0%
CTGCTGCGAGTGCTAATATA+TGG + chr3_4:70395166-70395185 Msa0518580:intron 45.0%
AGACTACACAGTGAAGCTTC+AGG + chr3_4:70395334-70395353 Msa0518580:intron 45.0%
! CTCTAGTTCCTGTCCACATA+AGG + chr3_4:70395603-70395622 Msa0518580:intron 45.0%
! ATATGCAGCCTTATGTGGAC+AGG - chr3_4:70395614-70395633 None:intergenic 45.0%
TGTCCACATAAGGCTGCATA+TGG + chr3_4:70395613-70395632 Msa0518580:intron 45.0%
! AAGCCATATGCAGCCTTATG+TGG - chr3_4:70395619-70395638 None:intergenic 45.0%
AGCTCACCACAAAGCCAATA+AGG - chr3_4:70395746-70395765 None:intergenic 45.0%
TGGTGAGCTTCTGTCTATGA+TGG + chr3_4:70395757-70395776 Msa0518580:intron 45.0%
CACGATGCTTCTGTCATAGA+TGG + chr3_4:70395785-70395804 Msa0518580:intron 45.0%
!! GAAGAGTGCTTAACCACCAT+AGG - chr3_4:70395835-70395854 None:intergenic 45.0%
AGTGGTTAAGCCTTGGATTG+TGG + chr3_4:70395934-70395953 Msa0518580:intron 45.0%
TAAGCAGAAGCCACAATCCA+AGG - chr3_4:70395947-70395966 None:intergenic 45.0%
GGATTGTGGCTTCTGCTTAA+TGG + chr3_4:70395948-70395967 Msa0518580:intron 45.0%
! AGTGGTTAAGCCTTGAGTTG+TGG + chr3_4:70396018-70396037 Msa0518580:intron 45.0%
TAAGCAGAAGCCACAACTCA+AGG - chr3_4:70396031-70396050 None:intergenic 45.0%
GAGTTGTGGCTTCTGCTTAA+TGG + chr3_4:70396032-70396051 Msa0518580:intron 45.0%
! TCAGTTTTTCTGCCAGTGTC+TGG + chr3_4:70396085-70396104 Msa0518580:intron 45.0%
TCCAAACAATGTCCAGACAC+TGG - chr3_4:70396100-70396119 None:intergenic 45.0%
ACTGTGTTGGAGGGGTTATA+TGG + chr3_4:70396151-70396170 Msa0518580:intron 45.0%
TTGGAGGGGTTATATGGACA+AGG + chr3_4:70396157-70396176 Msa0518580:intron 45.0%
ATTTGCCTTGCATGCACCAT+TGG + chr3_4:70396212-70396231 Msa0518580:intron 45.0%
!! CCATAACAGGAAGGTACCAA+TGG - chr3_4:70396231-70396250 None:intergenic 45.0%
CCATTGGTACCTTCCTGTTA+TGG + chr3_4:70396228-70396247 Msa0518580:intron 45.0%
ACATCCACTCCATAACAGGA+AGG - chr3_4:70396240-70396259 None:intergenic 45.0%
GAGTGGATGTTCATACTTGC+TGG + chr3_4:70396250-70396269 Msa0518580:intron 45.0%
! TGGATGTTCATACTTGCTGG+AGG + chr3_4:70396253-70396272 Msa0518580:intron 45.0%
ACAAGGAACGTTGAAGGAGA+GGG - chr3_4:70396352-70396371 None:intergenic 45.0%
TACAAGGAACGTTGAAGGAG+AGG - chr3_4:70396353-70396372 None:intergenic 45.0%
TCTTACCTTGAGTTTGAGGG+AGG + chr3_4:70396481-70396500 Msa0518580:intron 45.0%
AAATTGAAGTCTCGGGGAGG+AGG - chr3_4:70390143-70390162 None:intergenic 50.0%
GGAAAATTGAAGTCTCGGGG+AGG - chr3_4:70390146-70390165 None:intergenic 50.0%
AGTGAGAACGATGAGAAGCG+TGG - chr3_4:70390193-70390212 None:intergenic 50.0%
! GGTAGTGGCGTAGGAATTTG+AGG - chr3_4:70390403-70390422 None:intergenic 50.0%
TACGCCACTACCTAAACCAC+CGG + chr3_4:70390411-70390430 Msa0518580:CDS 50.0%
TCATCTACGACGAAACCAGC+CGG - chr3_4:70390433-70390452 None:intergenic 50.0%
GGTTTCGTCGTAGATGACAC+TGG + chr3_4:70390436-70390455 Msa0518580:CDS 50.0%
TCCTGCGAACAACCTTCCTT+TGG + chr3_4:70390757-70390776 Msa0518580:CDS 50.0%
TCCAAAGGAAGGTTGTTCGC+AGG - chr3_4:70390761-70390780 None:intergenic 50.0%
!!! GGTTTTAGGGGTGAAAGACG+CGG + chr3_4:70390912-70390931 Msa0518580:intron 50.0%
!! TACAGAGCACAGGTGATGGA+TGG + chr3_4:70391106-70391125 Msa0518580:CDS 50.0%
! CAATGGTTGGCTGTGAAGCA+TGG - chr3_4:70391436-70391455 None:intergenic 50.0%
GCAAGTGCAAAAGAAGCAGC+AGG - chr3_4:70391750-70391769 None:intergenic 50.0%
! TACTGTTTTACCGCTCGTGG+CGG + chr3_4:70391893-70391912 Msa0518580:CDS 50.0%
GTAACAAAAACCGCCACGAG+CGG - chr3_4:70391906-70391925 None:intergenic 50.0%
ATCGCCATCAGAGAGTTCAG+AGG - chr3_4:70392240-70392259 None:intergenic 50.0%
! AGATGATGGCTTGGCAACTG+AGG + chr3_4:70392443-70392462 Msa0518580:CDS 50.0%
! GATGATGGCTTGGCAACTGA+GGG + chr3_4:70392444-70392463 Msa0518580:CDS 50.0%
TCCCCACTCATTACAGAGTC+TGG + chr3_4:70393355-70393374 Msa0518580:CDS 50.0%
GCCAGACTCTGTAATGAGTG+GGG - chr3_4:70393359-70393378 None:intergenic 50.0%
GGCCAGACTCTGTAATGAGT+GGG - chr3_4:70393360-70393379 None:intergenic 50.0%
TGGCCAGACTCTGTAATGAG+TGG - chr3_4:70393361-70393380 None:intergenic 50.0%
TCTATGGCGCTAATGACAGC+AGG - chr3_4:70393496-70393515 None:intergenic 50.0%
GCTTCTTCCTCCTGTGTGTA+AGG - chr3_4:70393623-70393642 None:intergenic 50.0%
CAACAGTGAGTCAAGGAGTG+CGG - chr3_4:70393645-70393664 None:intergenic 50.0%
GCACTCCTTGACTCACTGTT+GGG + chr3_4:70393644-70393663 Msa0518580:CDS 50.0%
ATCAGGATTGCCCCACTGTT+GGG + chr3_4:70393729-70393748 Msa0518580:three_prime_UTR 50.0%
TGCATTCAGACCCAACAGTG+GGG - chr3_4:70393742-70393761 None:intergenic 50.0%
CTGCATTCAGACCCAACAGT+GGG - chr3_4:70393743-70393762 None:intergenic 50.0%
TCTGCATTCAGACCCAACAG+TGG - chr3_4:70393744-70393763 None:intergenic 50.0%
TTTGCGTTCGACGATGTCGA+CGG + chr3_4:70394727-70394746 Msa0518580:intron 50.0%
GCGGGAGTTGTTCTTGTTCT+AGG + chr3_4:70394774-70394793 Msa0518580:intron 50.0%
! GGTTCACTGTTGTGGTTTGG+TGG + chr3_4:70394809-70394828 Msa0518580:intron 50.0%
!! TGTTGTGGTTTGGTGGAGCT+TGG + chr3_4:70394816-70394835 Msa0518580:intron 50.0%
! TGTTAGCTTCTGCCCTATGG+TGG + chr3_4:70395819-70395838 Msa0518580:intron 50.0%
GCCAGTGTCTGGACATTGTT+TGG + chr3_4:70396096-70396115 Msa0518580:intron 50.0%
AGGTACCAATGGTGCATGCA+AGG - chr3_4:70396220-70396239 None:intergenic 50.0%
GGTACCTTCCTGTTATGGAG+TGG + chr3_4:70396233-70396252 Msa0518580:intron 50.0%
AACAGCCTCCCTCAAACTCA+AGG - chr3_4:70396489-70396508 None:intergenic 50.0%
! GGTGGTTTAGGTAGTGGCGT+AGG - chr3_4:70390412-70390431 None:intergenic 55.0%
ACGAAACCAGCCGGTGGTTT+AGG - chr3_4:70390424-70390443 None:intergenic 55.0%
! AGAAGGGACAGGCTCTGACT+AGG - chr3_4:70392186-70392205 None:intergenic 55.0%
GTGGCTTCGAAACCAAAGCG+AGG - chr3_4:70392218-70392237 None:intergenic 55.0%
GCCACCTCTGAACTCTCTGA+TGG + chr3_4:70392233-70392252 Msa0518580:intron 55.0%
GCCATCAGAGAGTTCAGAGG+TGG - chr3_4:70392237-70392256 None:intergenic 55.0%
CGCACTCCTTGACTCACTGT+TGG + chr3_4:70393643-70393662 Msa0518580:CDS 55.0%
CATCAGGATTGCCCCACTGT+TGG + chr3_4:70393728-70393747 Msa0518580:three_prime_UTR 55.0%
TCTCTCTCGCTTCTGCCCTA+TGG + chr3_4:70395861-70395880 Msa0518580:intron 55.0%
TGAAGTCTCGGGGAGGAGGA+AGG - chr3_4:70390139-70390158 None:intergenic 60.0%
CCAGCCGGTGGTTTAGGTAG+TGG - chr3_4:70390418-70390437 None:intergenic 60.0%
CCACTACCTAAACCACCGGC+TGG + chr3_4:70390415-70390434 Msa0518580:CDS 60.0%
TCTACGACGAAACCAGCCGG+TGG - chr3_4:70390430-70390449 None:intergenic 60.0%
! GCGTAGTGTTGGGTCACGAG+AGG - chr3_4:70390999-70391018 None:intergenic 60.0%
CTCTCGCTTCTGCCCTATGG+TGG + chr3_4:70395864-70395883 Msa0518580:intron 60.0%
GCGTTCGACGATGTCGACGG+TGG + chr3_4:70394730-70394749 Msa0518580:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70390074 70396877 70390074 ID=Msa0518580;Name=Msa0518580
chr3_4 mRNA 70390074 70396877 70390074 ID=Msa0518580-mRNA-1;Parent=Msa0518580;Name=Msa0518580-mRNA-1;_AED=0.16;_eAED=0.16;_QI=29|0.9|0.90|1|0.9|0.81|11|337|334
chr3_4 exon 70390074 70390498 70390074 ID=Msa0518580-mRNA-1:exon:19080;Parent=Msa0518580-mRNA-1
chr3_4 exon 70390752 70390849 70390752 ID=Msa0518580-mRNA-1:exon:19081;Parent=Msa0518580-mRNA-1
chr3_4 exon 70391092 70391134 70391092 ID=Msa0518580-mRNA-1:exon:19082;Parent=Msa0518580-mRNA-1
chr3_4 exon 70391717 70391799 70391717 ID=Msa0518580-mRNA-1:exon:19083;Parent=Msa0518580-mRNA-1
chr3_4 exon 70391892 70391956 70391892 ID=Msa0518580-mRNA-1:exon:19084;Parent=Msa0518580-mRNA-1
chr3_4 exon 70392436 70392491 70392436 ID=Msa0518580-mRNA-1:exon:19085;Parent=Msa0518580-mRNA-1
chr3_4 exon 70392954 70393013 70392954 ID=Msa0518580-mRNA-1:exon:19086;Parent=Msa0518580-mRNA-1
chr3_4 exon 70393310 70393402 70393310 ID=Msa0518580-mRNA-1:exon:19087;Parent=Msa0518580-mRNA-1
chr3_4 exon 70393478 70393543 70393478 ID=Msa0518580-mRNA-1:exon:19088;Parent=Msa0518580-mRNA-1
chr3_4 exon 70393632 70393824 70393632 ID=Msa0518580-mRNA-1:exon:19089;Parent=Msa0518580-mRNA-1
chr3_4 exon 70396689 70396877 70396689 ID=Msa0518580-mRNA-1:exon:19090;Parent=Msa0518580-mRNA-1
chr3_4 five_prime_UTR 70390074 70390102 70390074 ID=Msa0518580-mRNA-1:five_prime_utr;Parent=Msa0518580-mRNA-1
chr3_4 CDS 70390103 70390498 70390103 ID=Msa0518580-mRNA-1:cds;Parent=Msa0518580-mRNA-1
chr3_4 CDS 70390752 70390849 70390752 ID=Msa0518580-mRNA-1:cds;Parent=Msa0518580-mRNA-1
chr3_4 CDS 70391092 70391134 70391092 ID=Msa0518580-mRNA-1:cds;Parent=Msa0518580-mRNA-1
chr3_4 CDS 70391717 70391799 70391717 ID=Msa0518580-mRNA-1:cds;Parent=Msa0518580-mRNA-1
chr3_4 CDS 70391892 70391956 70391892 ID=Msa0518580-mRNA-1:cds;Parent=Msa0518580-mRNA-1
chr3_4 CDS 70392436 70392491 70392436 ID=Msa0518580-mRNA-1:cds;Parent=Msa0518580-mRNA-1
chr3_4 CDS 70392954 70393013 70392954 ID=Msa0518580-mRNA-1:cds;Parent=Msa0518580-mRNA-1
chr3_4 CDS 70393310 70393402 70393310 ID=Msa0518580-mRNA-1:cds;Parent=Msa0518580-mRNA-1
chr3_4 CDS 70393478 70393543 70393478 ID=Msa0518580-mRNA-1:cds;Parent=Msa0518580-mRNA-1
chr3_4 CDS 70393632 70393676 70393632 ID=Msa0518580-mRNA-1:cds;Parent=Msa0518580-mRNA-1
chr3_4 three_prime_UTR 70393677 70393824 70393677 ID=Msa0518580-mRNA-1:three_prime_utr;Parent=Msa0518580-mRNA-1
chr3_4 three_prime_UTR 70396689 70396877 70396689 ID=Msa0518580-mRNA-1:three_prime_utr;Parent=Msa0518580-mRNA-1
Gene Sequence

>Msa0518580

ATGGCGGCACAGTTACAAACCTTGAATGTTTATCCTTCCTCCTCCCCGAGACTTCAATTTTCCTTTCCTCATTCAACACTCAATCAACCACGCTTCTCATCGTTCTCACTTCGAATTCGAAACCCTCGCTTTCAACCCATTATCTCTAGCGCTTCCAATGTTCAACCAAAGAAGCATTCTCCTTCTTCATCCACCAGAAACAAAAACCCAAAAAACAACAATGATAAGAAGAAGAAGAATAACAACAAGAGTAATGGTGAAATTGGTGATTCCAATTCCATTTCCAATTCTTCTCTGCCTCAAATTCCTACGCCACTACCTAAACCACCGGCTGGTTTCGTCGTAGATGACACTGGCAAGCTTCTTACTTCTTCAATGGACCGACTTGCCACACTTGTTGATCCTGCGAACAACCTTCCTTTGGAATGCGTGATAAGGAGAATATTCACAAGTTCTCGAGGAGATGATTGTATGTTGCTATGCCCACTTGACATGCCTATACAAATATTACAGAGCACAGGTGATGGATGGTCAGAAGTCAGTTACGAGGAGCTTGAGTCTCTTCTGCCTGCTGCTTCTTTTGCACTTGCCAAATTACGAATGCATCTGATTTATAGTGGATACTGTTTTACCGCTCGTGGCGGTTTTTGTTACTCAGAAGAAGACATCTTTGACTTTCATGCAGATGGTAAAGATGATGGCTTGGCAACTGAGGGTGTAGAAATCACACACTTCAATCAGGAAGCAGCGCACTACATGATATATACACCATCTGATCCACTGCTTTTTGTCGCTGCAAAGGATCAGAATGGAATGCTACAAATCGCTGATGATGTAAGTAGGCACTCCCCACTCATTACAGAGTCTGGCCATTATTTCCTTCTCAGCTCCCATGAATTGCTTGAGGATCCTGCTGTCATTAGCGCCATAGATGAAGAGACTGAATTTAATGCCTTGGTGGAGGAAGAAGCCGCACTCCTTGACTCACTGTTGGGTAAAAGATAA

Protein sequence

>Msa0518580

MAAQLQTLNVYPSSSPRLQFSFPHSTLNQPRFSSFSLRIRNPRFQPIISSASNVQPKKHSPSSSTRNKNPKNNNDKKKKNNNKSNGEIGDSNSISNSSLPQIPTPLPKPPAGFVVDDTGKLLTSSMDRLATLVDPANNLPLECVIRRIFTSSRGDDCMLLCPLDMPIQILQSTGDGWSEVSYEELESLLPAASFALAKLRMHLIYSGYCFTARGGFCYSEEDIFDFHADGKDDGLATEGVEITHFNQEAAHYMIYTPSDPLLFVAAKDQNGMLQIADDVSRHSPLITESGHYFLLSSHELLEDPAVISAIDEETEFNALVEEEAALLDSLLGKR*