Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046110 | sp|O80952|PGPS1_ARATH | 75.000 | 136 | 34 | 0 | 87 | 222 | 103 | 238 | 3.42e-67 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0046110 | 0.833937 | 4.002649e-56 | -8.615850e-47 |
| Msa0046110 | Msa0054920 | -0.811343 | 7.341795e-51 | -8.615850e-47 |
| Msa0046110 | Msa0090510 | -0.824730 | 6.888887e-54 | -8.615850e-47 |
| Msa0046110 | Msa0093950 | 0.823947 | 1.052780e-53 | -8.615850e-47 |
| Msa0046110 | Msa0100290 | -0.802576 | 5.253894e-49 | -8.615850e-47 |
| Msa0046110 | Msa0120880 | -0.800242 | 1.579764e-48 | -8.615850e-47 |
| Msa0046110 | Msa0140770 | 0.828927 | 6.848800e-55 | -8.615850e-47 |
| Msa0046110 | Msa0144530 | -0.811796 | 5.852553e-51 | -8.615850e-47 |
| Msa0046110 | Msa0150860 | -0.803807 | 2.923250e-49 | -8.615850e-47 |
| Msa0046110 | Msa0160960 | -0.809659 | 1.695993e-50 | -8.615850e-47 |
| Msa0046110 | Msa0173800 | -0.805331 | 1.405770e-49 | -8.615850e-47 |
| Msa0046110 | Msa0183910 | -0.809389 | 1.938779e-50 | -8.615850e-47 |
| Msa0046110 | Msa0204960 | -0.800578 | 1.349831e-48 | -8.615850e-47 |
| Msa0046110 | Msa0220400 | 0.859184 | 4.929968e-63 | -8.615850e-47 |
| Msa0046110 | Msa0240900 | -0.854005 | 1.641443e-61 | -8.615850e-47 |
| Msa0046110 | Msa0288010 | 0.817760 | 2.789484e-52 | -8.615850e-47 |
| Msa0046110 | Msa0295460 | 0.825870 | 3.702663e-54 | -8.615850e-47 |
| Msa0046110 | Msa0296050 | 0.850917 | 1.245321e-60 | -8.615850e-47 |
| Msa0046110 | Msa0299530 | 0.805403 | 1.357907e-49 | -8.615850e-47 |
| Msa0046110 | Msa0317970 | -0.830909 | 2.251572e-55 | -8.615850e-47 |
| Msa0046110 | Msa0321690 | -0.801520 | 8.663608e-49 | -8.615850e-47 |
| Msa0046110 | Msa0333970 | 0.849565 | 2.979570e-60 | -8.615850e-47 |
| Msa0046110 | Msa0378970 | -0.801350 | 9.387124e-49 | -8.615850e-47 |
| Msa0046110 | Msa0380400 | 0.823345 | 1.456347e-53 | -8.615850e-47 |
| Msa0046110 | Msa0450400 | 0.820260 | 7.533405e-53 | -8.615850e-47 |
| Msa0046110 | Msa0474940 | -0.809695 | 1.666490e-50 | -8.615850e-47 |
| Msa0046110 | Msa0476170 | 0.836607 | 8.475536e-57 | -8.615850e-47 |
| Msa0046110 | Msa0479760 | 0.820914 | 5.331920e-53 | -8.615850e-47 |
| Msa0046110 | Msa0500470 | -0.800109 | 1.681399e-48 | -8.615850e-47 |
| Msa0046110 | Msa0518170 | -0.815590 | 8.550327e-52 | -8.615850e-47 |
| Msa0046110 | Msa0519160 | -0.800034 | 1.741616e-48 | -8.615850e-47 |
| Msa0046110 | Msa0523430 | 0.817953 | 2.523560e-52 | -8.615850e-47 |
| Msa0046110 | Msa0523490 | 0.824730 | 6.888887e-54 | -8.615850e-47 |
| Msa0046110 | Msa0559450 | 0.812409 | 4.301975e-51 | -8.615850e-47 |
| Msa0046110 | Msa0562570 | -0.805818 | 1.110693e-49 | -8.615850e-47 |
| Msa0046110 | Msa0572550 | 0.819046 | 1.426238e-52 | -8.615850e-47 |
| Msa0046110 | Msa0576080 | 0.825282 | 5.103830e-54 | -8.615850e-47 |
| Msa0046110 | Msa0576120 | 0.850034 | 2.204066e-60 | -8.615850e-47 |
| Msa0046110 | Msa0581280 | -0.801566 | 8.475389e-49 | -8.615850e-47 |
| Msa0046110 | Msa0583360 | 0.860471 | 2.018453e-63 | -8.615850e-47 |
| Msa0046110 | Msa0665530 | 0.845305 | 4.413033e-59 | -8.615850e-47 |
| Msa0046110 | Msa0745250 | 0.812472 | 4.167817e-51 | -8.615850e-47 |
| Msa0046110 | Msa0775170 | 0.836995 | 6.748524e-57 | -8.615850e-47 |
| Msa0046110 | Msa0823540 | -0.803773 | 2.970878e-49 | -8.615850e-47 |
| Msa0046110 | Msa0833950 | 0.802047 | 6.751018e-49 | -8.615850e-47 |
| Msa0046110 | Msa0870460 | 0.817403 | 3.358548e-52 | -8.615850e-47 |
| Msa0046110 | Msa0933760 | -0.807988 | 3.862443e-50 | -8.615850e-47 |
| Msa0046110 | Msa0934140 | -0.809102 | 2.233998e-50 | -8.615850e-47 |
| Msa0046110 | Msa1085610 | 0.829112 | 6.176714e-55 | -8.615850e-47 |
| Msa0046110 | Msa1087520 | 0.803036 | 4.222108e-49 | -8.615850e-47 |
| Msa0046110 | Msa1089450 | -0.842108 | 3.161982e-58 | -8.615850e-47 |
| Msa0046110 | Msa1123770 | -0.804214 | 2.405590e-49 | -8.615850e-47 |
| Msa0046110 | Msa1128270 | -0.809497 | 1.837727e-50 | -8.615850e-47 |
| Msa0046110 | Msa1155170 | 0.835801 | 1.358214e-56 | -8.615850e-47 |
| Msa0046110 | Msa1169910 | -0.805549 | 1.265418e-49 | -8.615850e-47 |
| Msa0046110 | Msa1175200 | -0.801500 | 8.746394e-49 | -8.615850e-47 |
| Msa0046110 | Msa1183140 | -0.818131 | 2.299926e-52 | -8.615850e-47 |
| Msa0046110 | Msa1190100 | 0.818050 | 2.399368e-52 | -8.615850e-47 |
| Msa0046110 | Msa1208450 | 0.811972 | 5.358140e-51 | -8.615850e-47 |
| Msa0046110 | Msa1225860 | 0.864525 | 1.141933e-64 | -8.615850e-47 |
| Msa0046110 | Msa1236110 | 0.916307 | 2.085936e-85 | -8.615850e-47 |
| Msa0046110 | Msa1236160 | 0.807183 | 5.723245e-50 | -8.615850e-47 |
| Msa0046110 | Msa1258030 | 0.814313 | 1.641638e-51 | -8.615850e-47 |
| Msa0046110 | Msa1307180 | -0.818306 | 2.100166e-52 | -8.615850e-47 |
| Msa0046110 | Msa1316360 | -0.810599 | 1.063906e-50 | -8.615850e-47 |
| Msa0046110 | Msa1325410 | 0.831171 | 1.941655e-55 | -8.615850e-47 |
| Msa0046110 | Msa1330540 | 0.804547 | 2.049637e-49 | -8.615850e-47 |
| Msa0046110 | Msa1340200 | -0.830006 | 3.743478e-55 | -8.615850e-47 |
| Msa0046110 | Msa1346840 | -0.808613 | 2.841909e-50 | -8.615850e-47 |
| Msa0046110 | Msa1352280 | 0.834350 | 3.153748e-56 | -8.615850e-47 |
| Msa0046110 | Msa1356600 | 0.801431 | 9.031606e-49 | -8.615850e-47 |
| Msa0046110 | Msa1359400 | -0.813907 | 2.017783e-51 | -8.615850e-47 |
| Msa0046110 | Msa1363820 | 0.828462 | 8.871108e-55 | -8.615850e-47 |
| Msa0046110 | Msa1364350 | 0.808437 | 3.099204e-50 | -8.615850e-47 |
| Msa0046110 | Msa1368360 | -0.817971 | 2.499624e-52 | -8.615850e-47 |
| Msa0046110 | Msa1369920 | 0.821151 | 4.702820e-53 | -8.615850e-47 |
| Msa0046110 | Msa1375610 | 0.837548 | 4.872041e-57 | -8.615850e-47 |
| Msa0046110 | Msa1376550 | 0.836036 | 1.183703e-56 | -8.615850e-47 |
| Msa0046110 | Msa1384760 | 0.810178 | 1.311284e-50 | -8.615850e-47 |
| Msa0046110 | Msa1385720 | -0.806852 | 6.725571e-50 | -8.615850e-47 |
| Msa0046110 | Msa1393840 | 0.816728 | 4.762569e-52 | -8.615850e-47 |
| Msa0046110 | Msa1407190 | -0.824403 | 8.226049e-54 | -8.615850e-47 |
| Msa0046110 | Msa1413380 | -0.808651 | 2.789583e-50 | -8.615850e-47 |
| Msa0046110 | Msa1423540 | -0.805855 | 1.091370e-49 | -8.615850e-47 |
| Msa0046110 | Msa1432130 | -0.817479 | 3.227369e-52 | -8.615850e-47 |
| Msa0046110 | Msa1434090 | -0.810894 | 9.186665e-51 | -8.615850e-47 |
| Msa0046110 | Msa1464090 | -0.814390 | 1.578485e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046110 | MtrunA17_Chr1g0213381 | 84.649 | 228 | 24 | 5 | 1 | 222 | 1 | 223 | 8.25e-112 | 322 |
| Msa0046110 | MtrunA17_Chr7g0214161 | 75.806 | 124 | 30 | 0 | 99 | 222 | 37 | 160 | 7.85e-64 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046110 | AT2G39290.1 | 75.000 | 136 | 34 | 0 | 87 | 222 | 103 | 238 | 3.48e-68 | 211 |
| Msa0046110 | AT3G55030.1 | 66.452 | 155 | 48 | 1 | 72 | 222 | 20 | 174 | 9.56e-67 | 206 |
Find 93 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGACAAATTAGGGGTTTC+TGG | 0.112582 | 1_1:+78138192 | Msa0046110:CDS |
| TCTTCTTTCTCAGACAAATT+AGG | 0.144337 | 1_1:+78138183 | Msa0046110:CDS |
| CTTCTTTCTCAGACAAATTA+GGG | 0.185465 | 1_1:+78138184 | Msa0046110:CDS |
| GAGAAAGAAGAAGAAGAAAT+TGG | 0.213392 | 1_1:-78138171 | None:intergenic |
| GATCTAAGAATGCACCAAAT+TGG | 0.237949 | 1_1:-78138610 | None:intergenic |
| AAGGGAGTGAGTGGTAAATT+TGG | 0.250582 | 1_1:+78137967 | Msa0046110:five_prime_UTR |
| TGGTGGTGAATGTTTCTATA+AGG | 0.262646 | 1_1:-78138123 | None:intergenic |
| GGTTCAGGTTCAGGTTGTTC+TGG | 0.284744 | 1_1:-78138246 | None:intergenic |
| ATGAACTTAAAATCCCAATT+TGG | 0.289154 | 1_1:+78138596 | Msa0046110:CDS |
| AATTATTGTAGCTTTCTATA+TGG | 0.289686 | 1_1:+78138401 | Msa0046110:intron |
| GATGAAGATGGGTTTGGTTC+TGG | 0.292552 | 1_1:-78138094 | None:intergenic |
| TCGGTTACTGATTGGCTTGA+TGG | 0.314356 | 1_1:+78138471 | Msa0046110:CDS |
| GTGAGCAATTTGGAAGGTTC+AGG | 0.341309 | 1_1:-78138261 | None:intergenic |
| GATGGGTTTGGTTCTGGACT+TGG | 0.350976 | 1_1:-78138088 | None:intergenic |
| GGTGGTGAATGTTTCTATAA+GGG | 0.361170 | 1_1:-78138122 | None:intergenic |
| ATGATGGCGATGGCAGGTAT+AGG | 0.363083 | 1_1:-78138864 | None:intergenic |
| TTGCTGCCTCGGTTACTGAT+TGG | 0.370730 | 1_1:+78138463 | Msa0046110:CDS |
| AGAAACATTCACCACCAATA+TGG | 0.370992 | 1_1:+78138129 | Msa0046110:CDS |
| GGTGGGCAGAGTGAGCAATT+TGG | 0.375572 | 1_1:-78138271 | None:intergenic |
| CTTTACCTCTCTTCCAATGA+TGG | 0.398361 | 1_1:-78138880 | None:intergenic |
| ATCTAAGAATGCACCAAATT+GGG | 0.400128 | 1_1:-78138609 | None:intergenic |
| CCTCTAAAAGCTTACTATCC+TGG | 0.403316 | 1_1:-78139301 | None:intergenic |
| CAGGGAATGGGCAGCTTCCC+AGG | 0.403525 | 1_1:+78139283 | Msa0046110:CDS |
| ATACCTGCCATCGCCATCAT+TGG | 0.408072 | 1_1:+78138867 | Msa0046110:CDS |
| GATTTGCTTGTCCGGTGAAT+TGG | 0.412778 | 1_1:+78137989 | Msa0046110:five_prime_UTR |
| AGAAAGAAGAAGAAGAAATT+GGG | 0.413432 | 1_1:-78138170 | None:intergenic |
| AATTTGGAAGGTTCAGGTTC+AGG | 0.413910 | 1_1:-78138255 | None:intergenic |
| TAGGGAGTAGCCAGGGTAGT+TGG | 0.414090 | 1_1:-78138845 | None:intergenic |
| GATAGAGATGAAGATGGGTT+TGG | 0.420168 | 1_1:-78138100 | None:intergenic |
| AAACACAGTGATTTGTTTGA+AGG | 0.421300 | 1_1:+78137948 | Msa0046110:five_prime_UTR |
| AGATTACCATGTCTGCTGTC+AGG | 0.423266 | 1_1:+78139264 | Msa0046110:intron |
| TGATGGCGATGGCAGGTATA+GGG | 0.434558 | 1_1:-78138863 | None:intergenic |
| GGTTCTGGACTTGGCGGCAG+TGG | 0.438367 | 1_1:-78138079 | None:intergenic |
| TAGTTGTGACGCGTCCATAT+TGG | 0.442059 | 1_1:-78138143 | None:intergenic |
| ACAGGTACCTTGTCAGCAAC+AGG | 0.446463 | 1_1:-78138632 | None:intergenic |
| CTGCCCACCATTCTCACTCT+TGG | 0.449250 | 1_1:+78138285 | Msa0046110:CDS |
| CTCTAAAAGCTTACTATCCT+GGG | 0.451476 | 1_1:-78139300 | None:intergenic |
| AGGGAGTAGCCAGGGTAGTT+GGG | 0.452299 | 1_1:-78138844 | None:intergenic |
| CCATGTCTGCTGTCAGGGAA+TGG | 0.452876 | 1_1:+78139270 | Msa0046110:CDS |
| AGCGGTTGCGCTCAGTTTCA+AGG | 0.457872 | 1_1:-78138025 | None:intergenic |
| CTTATTATGTACTAGACCCT+TGG | 0.460718 | 1_1:+78138806 | Msa0046110:CDS |
| AGCAATGAAAATTGTGGTAC+TGG | 0.471953 | 1_1:-78138445 | None:intergenic |
| AAATAAACTAGTACTACAAT+GGG | 0.475094 | 1_1:-78137916 | None:intergenic |
| GGTTCAGGTTGTTCTGGTTG+TGG | 0.477923 | 1_1:-78138240 | None:intergenic |
| CTTAGATCCTGTTGCTGACA+AGG | 0.479252 | 1_1:+78138625 | Msa0046110:CDS |
| CATGTCTGCTGTCAGGGAAT+GGG | 0.482501 | 1_1:+78139271 | Msa0046110:CDS |
| AGCTAGTTGATTCAAGTGTA+GGG | 0.495555 | 1_1:-78139334 | None:intergenic |
| ATTGTAGCTTTCTATATGGA+TGG | 0.497682 | 1_1:+78138405 | Msa0046110:intron |
| GTGTCTTTGCCCAACTACCC+TGG | 0.500942 | 1_1:+78138835 | Msa0046110:CDS |
| TAAATTTGGATTTGCTTGTC+CGG | 0.504945 | 1_1:+78137981 | Msa0046110:five_prime_UTR |
| CTTCCAATGATGGCGATGGC+AGG | 0.509846 | 1_1:-78138870 | None:intergenic |
| CAGCTAGTTGATTCAAGTGT+AGG | 0.510139 | 1_1:-78139335 | None:intergenic |
| TAGCTTTCTATATGGATGGT+TGG | 0.512097 | 1_1:+78138409 | Msa0046110:intron |
| GCTTATGGTTGCCGCCACAT+TGG | 0.512365 | 1_1:+78138782 | Msa0046110:intron |
| AACACAGTGATTTGTTTGAA+GGG | 0.512641 | 1_1:+78137949 | Msa0046110:five_prime_UTR |
| GGGTTTGGTTCTGGACTTGG+CGG | 0.513435 | 1_1:-78138085 | None:intergenic |
| GATTACCATGTCTGCTGTCA+GGG | 0.518665 | 1_1:+78139265 | Msa0046110:intron |
| GACTTACTAGCAACAAGAAG+GGG | 0.521194 | 1_1:-78138324 | None:intergenic |
| GACATCATCAACCAATTCAC+CGG | 0.541296 | 1_1:-78138000 | None:intergenic |
| TTCTATATGGATGGTTGGCG+TGG | 0.541796 | 1_1:+78138414 | Msa0046110:CDS |
| AAAATAAACTAGTACTACAA+TGG | 0.543751 | 1_1:-78137917 | None:intergenic |
| CCATTCCCTGACAGCAGACA+TGG | 0.547207 | 1_1:-78139270 | None:intergenic |
| GGCAGGTATAGGGAGTAGCC+AGG | 0.548500 | 1_1:-78138853 | None:intergenic |
| GACACGACCAAGAGTGAGAA+TGG | 0.549394 | 1_1:-78138292 | None:intergenic |
| GGCAAAGACACCAACATCCA+AGG | 0.553394 | 1_1:-78138823 | None:intergenic |
| CTCTCTTCCAATGATGGCGA+TGG | 0.555715 | 1_1:-78138874 | None:intergenic |
| ATAAGGGATAGAGATGAAGA+TGG | 0.560789 | 1_1:-78138106 | None:intergenic |
| TTGTGACGCGTCCATATTGG+TGG | 0.562578 | 1_1:-78138140 | None:intergenic |
| ACTTGGCGGCAGTGGCTGAA+CGG | 0.567037 | 1_1:-78138071 | None:intergenic |
| AAGACTTACTAGCAACAAGA+AGG | 0.569579 | 1_1:-78138326 | None:intergenic |
| TCAGGTTGTTCTGGTTGTGG+TGG | 0.573232 | 1_1:-78138237 | None:intergenic |
| TAAGGGATAGAGATGAAGAT+GGG | 0.578208 | 1_1:-78138105 | None:intergenic |
| GGTGAATTGGTTGATGATGT+CGG | 0.579366 | 1_1:+78138002 | Msa0046110:exon |
| CGACCAAGAGTGAGAATGGT+GGG | 0.581343 | 1_1:-78138288 | None:intergenic |
| ACAGATAGAAGAAGAAGAAG+CGG | 0.581371 | 1_1:-78138043 | None:intergenic |
| TGATGGCTATATTGCTCGCA+AGG | 0.583037 | 1_1:+78138488 | Msa0046110:CDS |
| CTACACTTGAATCAACTAGC+TGG | 0.583873 | 1_1:+78139336 | Msa0046110:CDS |
| AGACTTACTAGCAACAAGAA+GGG | 0.595087 | 1_1:-78138325 | None:intergenic |
| ATTTGTTTGAAGGGAGTGAG+TGG | 0.613909 | 1_1:+78137958 | Msa0046110:five_prime_UTR |
| TTCTTTCTCAGACAAATTAG+GGG | 0.614292 | 1_1:+78138185 | Msa0046110:CDS |
| CGAGGCAGCAATGAAAATTG+TGG | 0.615674 | 1_1:-78138451 | None:intergenic |
| CATCGCCATCATTGGAAGAG+AGG | 0.620832 | 1_1:+78138875 | Msa0046110:CDS |
| TGTACTAGACCCTTGGATGT+TGG | 0.624995 | 1_1:+78138813 | Msa0046110:CDS |
| GCAGGTATAGGGAGTAGCCA+GGG | 0.629884 | 1_1:-78138852 | None:intergenic |
| GGCAGAGTGAGCAATTTGGA+AGG | 0.632472 | 1_1:-78138267 | None:intergenic |
| TGGCGGCAGTGGCTGAACGG+AGG | 0.655379 | 1_1:-78138068 | None:intergenic |
| GCAAAGACACCAACATCCAA+GGG | 0.658176 | 1_1:-78138822 | None:intergenic |
| ACTTACTAGCAACAAGAAGG+GGG | 0.658643 | 1_1:-78138323 | None:intergenic |
| ACATAATAAGACCAATGTGG+CGG | 0.672036 | 1_1:-78138793 | None:intergenic |
| ATCAAGCCAATCAGTAACCG+AGG | 0.672140 | 1_1:-78138469 | None:intergenic |
| ACGACCAAGAGTGAGAATGG+TGG | 0.693774 | 1_1:-78138289 | None:intergenic |
| AATGAAAATTGTGGTACTGG+CGG | 0.723059 | 1_1:-78138442 | None:intergenic |
| AGTACATAATAAGACCAATG+TGG | 0.733330 | 1_1:-78138796 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTGTTTTTATCAATAGA+CGG | - | chr1_1:78137874-78137893 | None:intergenic | 15.0% |
| !! | TCACAAGAAAAAAAAAAATA+AGG | - | chr1_1:78139234-78139253 | None:intergenic | 15.0% |
| !!! | TAATTGTTTTTATCAATAGA+CGG | - | chr1_1:78137874-78137893 | None:intergenic | 15.0% |
| !! | TCACAAGAAAAAAAAAAATA+AGG | - | chr1_1:78139234-78139253 | None:intergenic | 15.0% |
| !! | AAATAAACTAGTACTACAAT+GGG | - | chr1_1:78137919-78137938 | None:intergenic | 20.0% |
| !! | AAAATAAACTAGTACTACAA+TGG | - | chr1_1:78137920-78137939 | None:intergenic | 20.0% |
| !!! | AGTACTAGTTTATTTTTATC+TGG | + | chr1_1:78137924-78137943 | Msa0046110:five_prime_UTR | 20.0% |
| !! | AATGAATGTGTAAATGTAAT+TGG | - | chr1_1:78138378-78138397 | None:intergenic | 20.0% |
| !! | AATTATTGTAGCTTTCTATA+TGG | + | chr1_1:78138401-78138420 | Msa0046110:intron | 20.0% |
| !! | ATTGTATTGTAATATGCAAT+AGG | - | chr1_1:78138669-78138688 | None:intergenic | 20.0% |
| !! | AAAAAATAAGGAATCTGATT+TGG | - | chr1_1:78139222-78139241 | None:intergenic | 20.0% |
| !! | AAATAAACTAGTACTACAAT+GGG | - | chr1_1:78137919-78137938 | None:intergenic | 20.0% |
| !! | AAAATAAACTAGTACTACAA+TGG | - | chr1_1:78137920-78137939 | None:intergenic | 20.0% |
| !!! | AGTACTAGTTTATTTTTATC+TGG | + | chr1_1:78137924-78137943 | Msa0046110:five_prime_UTR | 20.0% |
| !! | AATGAATGTGTAAATGTAAT+TGG | - | chr1_1:78138378-78138397 | None:intergenic | 20.0% |
| !! | AATTATTGTAGCTTTCTATA+TGG | + | chr1_1:78138401-78138420 | Msa0046110:intron | 20.0% |
| !! | ATTGTATTGTAATATGCAAT+AGG | - | chr1_1:78138669-78138688 | None:intergenic | 20.0% |
| !! | AAAAAATAAGGAATCTGATT+TGG | - | chr1_1:78139222-78139241 | None:intergenic | 20.0% |
| ! | AGAAAGAAGAAGAAGAAATT+GGG | - | chr1_1:78138173-78138192 | None:intergenic | 25.0% |
| ! | TAAATGTAATTGGCATATGA+TGG | - | chr1_1:78138368-78138387 | None:intergenic | 25.0% |
| ! | ACATAGAAATAGGAAAAGTA+GGG | - | chr1_1:78138551-78138570 | None:intergenic | 25.0% |
| ! | CAAATATCAGACATAGAAAT+AGG | - | chr1_1:78138561-78138580 | None:intergenic | 25.0% |
| ! | ATGAACTTAAAATCCCAATT+TGG | + | chr1_1:78138596-78138615 | Msa0046110:CDS | 25.0% |
| ! | TTGTAATATGCAATAGGAAT+AGG | - | chr1_1:78138663-78138682 | None:intergenic | 25.0% |
| ! | ATTGATTGAGAAACAAACAT+TGG | - | chr1_1:78138966-78138985 | None:intergenic | 25.0% |
| !! | ATGTTTGTTTCTCAATCAAT+TGG | + | chr1_1:78138966-78138985 | Msa0046110:intron | 25.0% |
| !! | CATATTTTCTTCTGATTTAC+TGG | + | chr1_1:78139182-78139201 | Msa0046110:intron | 25.0% |
| ! | AGAAAGAAGAAGAAGAAATT+GGG | - | chr1_1:78138173-78138192 | None:intergenic | 25.0% |
| ! | TAAATGTAATTGGCATATGA+TGG | - | chr1_1:78138368-78138387 | None:intergenic | 25.0% |
| ! | ACATAGAAATAGGAAAAGTA+GGG | - | chr1_1:78138551-78138570 | None:intergenic | 25.0% |
| ! | CAAATATCAGACATAGAAAT+AGG | - | chr1_1:78138561-78138580 | None:intergenic | 25.0% |
| ! | ATGAACTTAAAATCCCAATT+TGG | + | chr1_1:78138596-78138615 | Msa0046110:CDS | 25.0% |
| ! | TTGTAATATGCAATAGGAAT+AGG | - | chr1_1:78138663-78138682 | None:intergenic | 25.0% |
| ! | ATTGATTGAGAAACAAACAT+TGG | - | chr1_1:78138966-78138985 | None:intergenic | 25.0% |
| !! | ATGTTTGTTTCTCAATCAAT+TGG | + | chr1_1:78138966-78138985 | Msa0046110:intron | 25.0% |
| !! | CATATTTTCTTCTGATTTAC+TGG | + | chr1_1:78139182-78139201 | Msa0046110:intron | 25.0% |
| !! | AAACACAGTGATTTGTTTGA+AGG | + | chr1_1:78137948-78137967 | Msa0046110:five_prime_UTR | 30.0% |
| !! | AACACAGTGATTTGTTTGAA+GGG | + | chr1_1:78137949-78137968 | Msa0046110:five_prime_UTR | 30.0% |
| ! | TAAATTTGGATTTGCTTGTC+CGG | + | chr1_1:78137981-78138000 | Msa0046110:five_prime_UTR | 30.0% |
| GAGAAAGAAGAAGAAGAAAT+TGG | - | chr1_1:78138174-78138193 | None:intergenic | 30.0% | |
| TCTTCTTTCTCAGACAAATT+AGG | + | chr1_1:78138183-78138202 | Msa0046110:CDS | 30.0% | |
| CTTCTTTCTCAGACAAATTA+GGG | + | chr1_1:78138184-78138203 | Msa0046110:CDS | 30.0% | |
| TTCTTTCTCAGACAAATTAG+GGG | + | chr1_1:78138185-78138204 | Msa0046110:CDS | 30.0% | |
| ATTGTAGCTTTCTATATGGA+TGG | + | chr1_1:78138405-78138424 | Msa0046110:intron | 30.0% | |
| GACATAGAAATAGGAAAAGT+AGG | - | chr1_1:78138552-78138571 | None:intergenic | 30.0% | |
| ATCTAAGAATGCACCAAATT+GGG | - | chr1_1:78138612-78138631 | None:intergenic | 30.0% | |
| AATATGCAATAGGAATAGGT+AGG | - | chr1_1:78138659-78138678 | None:intergenic | 30.0% | |
| AGTACATAATAAGACCAATG+TGG | - | chr1_1:78138799-78138818 | None:intergenic | 30.0% | |
| !!! | TGTTTTAATCTAGAATGCTC+TGG | + | chr1_1:78138997-78139016 | Msa0046110:intron | 30.0% |
| AATTAAGCCAGACAATTTGT+TGG | + | chr1_1:78139041-78139060 | Msa0046110:intron | 30.0% | |
| GCAAAGCAAAATACATTTAC+AGG | - | chr1_1:78139082-78139101 | None:intergenic | 30.0% | |
| ! | AAATGTATTTTGCTTTGCCA+TGG | + | chr1_1:78139084-78139103 | Msa0046110:intron | 30.0% |
| ! | TATGATGTCTCAAAAGCATA+AGG | - | chr1_1:78139166-78139185 | None:intergenic | 30.0% |
| !! | AAACACAGTGATTTGTTTGA+AGG | + | chr1_1:78137948-78137967 | Msa0046110:five_prime_UTR | 30.0% |
| !! | AACACAGTGATTTGTTTGAA+GGG | + | chr1_1:78137949-78137968 | Msa0046110:five_prime_UTR | 30.0% |
| ! | TAAATTTGGATTTGCTTGTC+CGG | + | chr1_1:78137981-78138000 | Msa0046110:five_prime_UTR | 30.0% |
| GAGAAAGAAGAAGAAGAAAT+TGG | - | chr1_1:78138174-78138193 | None:intergenic | 30.0% | |
| TCTTCTTTCTCAGACAAATT+AGG | + | chr1_1:78138183-78138202 | Msa0046110:CDS | 30.0% | |
| CTTCTTTCTCAGACAAATTA+GGG | + | chr1_1:78138184-78138203 | Msa0046110:CDS | 30.0% | |
| TTCTTTCTCAGACAAATTAG+GGG | + | chr1_1:78138185-78138204 | Msa0046110:CDS | 30.0% | |
| ATTGTAGCTTTCTATATGGA+TGG | + | chr1_1:78138405-78138424 | Msa0046110:intron | 30.0% | |
| GACATAGAAATAGGAAAAGT+AGG | - | chr1_1:78138552-78138571 | None:intergenic | 30.0% | |
| ATCTAAGAATGCACCAAATT+GGG | - | chr1_1:78138612-78138631 | None:intergenic | 30.0% | |
| AATATGCAATAGGAATAGGT+AGG | - | chr1_1:78138659-78138678 | None:intergenic | 30.0% | |
| AGTACATAATAAGACCAATG+TGG | - | chr1_1:78138799-78138818 | None:intergenic | 30.0% | |
| !!! | TGTTTTAATCTAGAATGCTC+TGG | + | chr1_1:78138997-78139016 | Msa0046110:intron | 30.0% |
| AATTAAGCCAGACAATTTGT+TGG | + | chr1_1:78139041-78139060 | Msa0046110:intron | 30.0% | |
| GCAAAGCAAAATACATTTAC+AGG | - | chr1_1:78139082-78139101 | None:intergenic | 30.0% | |
| ! | AAATGTATTTTGCTTTGCCA+TGG | + | chr1_1:78139084-78139103 | Msa0046110:intron | 30.0% |
| ! | TATGATGTCTCAAAAGCATA+AGG | - | chr1_1:78139166-78139185 | None:intergenic | 30.0% |
| ACAGATAGAAGAAGAAGAAG+CGG | - | chr1_1:78138046-78138065 | None:intergenic | 35.0% | |
| TAAGGGATAGAGATGAAGAT+GGG | - | chr1_1:78138108-78138127 | None:intergenic | 35.0% | |
| ATAAGGGATAGAGATGAAGA+TGG | - | chr1_1:78138109-78138128 | None:intergenic | 35.0% | |
| ! | GGTGGTGAATGTTTCTATAA+GGG | - | chr1_1:78138125-78138144 | None:intergenic | 35.0% |
| ! | TGGTGGTGAATGTTTCTATA+AGG | - | chr1_1:78138126-78138145 | None:intergenic | 35.0% |
| AGAAACATTCACCACCAATA+TGG | + | chr1_1:78138129-78138148 | Msa0046110:CDS | 35.0% | |
| AGACTTACTAGCAACAAGAA+GGG | - | chr1_1:78138328-78138347 | None:intergenic | 35.0% | |
| AAGACTTACTAGCAACAAGA+AGG | - | chr1_1:78138329-78138348 | None:intergenic | 35.0% | |
| ! | TGTAATTGGCATATGATGGA+TGG | - | chr1_1:78138364-78138383 | None:intergenic | 35.0% |
| TAGCTTTCTATATGGATGGT+TGG | + | chr1_1:78138409-78138428 | Msa0046110:intron | 35.0% | |
| ! | AATGAAAATTGTGGTACTGG+CGG | - | chr1_1:78138445-78138464 | None:intergenic | 35.0% |
| AGCAATGAAAATTGTGGTAC+TGG | - | chr1_1:78138448-78138467 | None:intergenic | 35.0% | |
| ! | AAAGTAGGGTTAGTAAGTGT+GGG | - | chr1_1:78138537-78138556 | None:intergenic | 35.0% |
| ! | AAAAGTAGGGTTAGTAAGTG+TGG | - | chr1_1:78138538-78138557 | None:intergenic | 35.0% |
| GATCTAAGAATGCACCAAAT+TGG | - | chr1_1:78138613-78138632 | None:intergenic | 35.0% | |
| ACATAATAAGACCAATGTGG+CGG | - | chr1_1:78138796-78138815 | None:intergenic | 35.0% | |
| CTTATTATGTACTAGACCCT+TGG | + | chr1_1:78138806-78138825 | Msa0046110:CDS | 35.0% | |
| ! | TAATCAGTTTTCCTGTGTGT+TGG | + | chr1_1:78138907-78138926 | Msa0046110:intron | 35.0% |
| GAATTCATATTTCCCTTGTC+TGG | + | chr1_1:78138936-78138955 | Msa0046110:intron | 35.0% | |
| TTAACTATGCATCATGACCA+TGG | - | chr1_1:78139104-78139123 | None:intergenic | 35.0% | |
| ! | CTCTAAAAGCTTACTATCCT+GGG | - | chr1_1:78139303-78139322 | None:intergenic | 35.0% |
| ! | AGCTAGTTGATTCAAGTGTA+GGG | - | chr1_1:78139337-78139356 | None:intergenic | 35.0% |
| TGAATCAACTAGCTGGTATT+AGG | + | chr1_1:78139343-78139362 | Msa0046110:CDS | 35.0% | |
| GAATCAACTAGCTGGTATTA+GGG | + | chr1_1:78139344-78139363 | Msa0046110:CDS | 35.0% | |
| ACAGATAGAAGAAGAAGAAG+CGG | - | chr1_1:78138046-78138065 | None:intergenic | 35.0% | |
| TAAGGGATAGAGATGAAGAT+GGG | - | chr1_1:78138108-78138127 | None:intergenic | 35.0% | |
| ATAAGGGATAGAGATGAAGA+TGG | - | chr1_1:78138109-78138128 | None:intergenic | 35.0% | |
| ! | GGTGGTGAATGTTTCTATAA+GGG | - | chr1_1:78138125-78138144 | None:intergenic | 35.0% |
| ! | TGGTGGTGAATGTTTCTATA+AGG | - | chr1_1:78138126-78138145 | None:intergenic | 35.0% |
| AGAAACATTCACCACCAATA+TGG | + | chr1_1:78138129-78138148 | Msa0046110:CDS | 35.0% | |
| AGACTTACTAGCAACAAGAA+GGG | - | chr1_1:78138328-78138347 | None:intergenic | 35.0% | |
| AAGACTTACTAGCAACAAGA+AGG | - | chr1_1:78138329-78138348 | None:intergenic | 35.0% | |
| ! | TGTAATTGGCATATGATGGA+TGG | - | chr1_1:78138364-78138383 | None:intergenic | 35.0% |
| TAGCTTTCTATATGGATGGT+TGG | + | chr1_1:78138409-78138428 | Msa0046110:intron | 35.0% | |
| ! | AATGAAAATTGTGGTACTGG+CGG | - | chr1_1:78138445-78138464 | None:intergenic | 35.0% |
| AGCAATGAAAATTGTGGTAC+TGG | - | chr1_1:78138448-78138467 | None:intergenic | 35.0% | |
| ! | AAAGTAGGGTTAGTAAGTGT+GGG | - | chr1_1:78138537-78138556 | None:intergenic | 35.0% |
| ! | AAAAGTAGGGTTAGTAAGTG+TGG | - | chr1_1:78138538-78138557 | None:intergenic | 35.0% |
| GATCTAAGAATGCACCAAAT+TGG | - | chr1_1:78138613-78138632 | None:intergenic | 35.0% | |
| ACATAATAAGACCAATGTGG+CGG | - | chr1_1:78138796-78138815 | None:intergenic | 35.0% | |
| CTTATTATGTACTAGACCCT+TGG | + | chr1_1:78138806-78138825 | Msa0046110:CDS | 35.0% | |
| ! | TAATCAGTTTTCCTGTGTGT+TGG | + | chr1_1:78138907-78138926 | Msa0046110:intron | 35.0% |
| GAATTCATATTTCCCTTGTC+TGG | + | chr1_1:78138936-78138955 | Msa0046110:intron | 35.0% | |
| TTAACTATGCATCATGACCA+TGG | - | chr1_1:78139104-78139123 | None:intergenic | 35.0% | |
| ! | CTCTAAAAGCTTACTATCCT+GGG | - | chr1_1:78139303-78139322 | None:intergenic | 35.0% |
| ! | AGCTAGTTGATTCAAGTGTA+GGG | - | chr1_1:78139337-78139356 | None:intergenic | 35.0% |
| ATTTGTTTGAAGGGAGTGAG+TGG | + | chr1_1:78137958-78137977 | Msa0046110:five_prime_UTR | 40.0% | |
| AAGGGAGTGAGTGGTAAATT+TGG | + | chr1_1:78137967-78137986 | Msa0046110:five_prime_UTR | 40.0% | |
| GACATCATCAACCAATTCAC+CGG | - | chr1_1:78138003-78138022 | None:intergenic | 40.0% | |
| !! | GGTGAATTGGTTGATGATGT+CGG | + | chr1_1:78138002-78138021 | Msa0046110:exon | 40.0% |
| ! | GATAGAGATGAAGATGGGTT+TGG | - | chr1_1:78138103-78138122 | None:intergenic | 40.0% |
| TCAGACAAATTAGGGGTTTC+TGG | + | chr1_1:78138192-78138211 | Msa0046110:CDS | 40.0% | |
| ! | AATTTGGAAGGTTCAGGTTC+AGG | - | chr1_1:78138258-78138277 | None:intergenic | 40.0% |
| ACTTACTAGCAACAAGAAGG+GGG | - | chr1_1:78138326-78138345 | None:intergenic | 40.0% | |
| GACTTACTAGCAACAAGAAG+GGG | - | chr1_1:78138327-78138346 | None:intergenic | 40.0% | |
| !! | ATTGGCATATGATGGATGGA+AGG | - | chr1_1:78138360-78138379 | None:intergenic | 40.0% |
| ! | CACAATTTTCATTGCTGCCT+CGG | + | chr1_1:78138452-78138471 | Msa0046110:CDS | 40.0% |
| CAATAGGAATAGGTAGGTAC+AGG | - | chr1_1:78138653-78138672 | None:intergenic | 40.0% | |
| CTTCTACTCATTGCAGCTTA+TGG | + | chr1_1:78138767-78138786 | Msa0046110:intron | 40.0% | |
| CTTTACCTCTCTTCCAATGA+TGG | - | chr1_1:78138883-78138902 | None:intergenic | 40.0% | |
| ! | AGTTTTCCTGTGTGTTGGAT+TGG | + | chr1_1:78138912-78138931 | Msa0046110:intron | 40.0% |
| AATTCTCCAATCCAACACAC+AGG | - | chr1_1:78138921-78138940 | None:intergenic | 40.0% | |
| AACATTGGAGATCCAGACAA+GGG | - | chr1_1:78138951-78138970 | None:intergenic | 40.0% | |
| AAACATTGGAGATCCAGACA+AGG | - | chr1_1:78138952-78138971 | None:intergenic | 40.0% | |
| CGATATGCCAACAAATTGTC+TGG | - | chr1_1:78139051-78139070 | None:intergenic | 40.0% | |
| AGCAGACATGGTAATCTACT+TGG | - | chr1_1:78139261-78139280 | None:intergenic | 40.0% | |
| ! | CCTCTAAAAGCTTACTATCC+TGG | - | chr1_1:78139304-78139323 | None:intergenic | 40.0% |
| ! | CCAGGATAGTAAGCTTTTAG+AGG | + | chr1_1:78139301-78139320 | Msa0046110:CDS | 40.0% |
| ! | CAGCTAGTTGATTCAAGTGT+AGG | - | chr1_1:78139338-78139357 | None:intergenic | 40.0% |
| CTACACTTGAATCAACTAGC+TGG | + | chr1_1:78139336-78139355 | Msa0046110:CDS | 40.0% | |
| ATTTGTTTGAAGGGAGTGAG+TGG | + | chr1_1:78137958-78137977 | Msa0046110:five_prime_UTR | 40.0% | |
| AAGGGAGTGAGTGGTAAATT+TGG | + | chr1_1:78137967-78137986 | Msa0046110:five_prime_UTR | 40.0% | |
| GACATCATCAACCAATTCAC+CGG | - | chr1_1:78138003-78138022 | None:intergenic | 40.0% | |
| !! | GGTGAATTGGTTGATGATGT+CGG | + | chr1_1:78138002-78138021 | Msa0046110:exon | 40.0% |
| ! | GATAGAGATGAAGATGGGTT+TGG | - | chr1_1:78138103-78138122 | None:intergenic | 40.0% |
| TCAGACAAATTAGGGGTTTC+TGG | + | chr1_1:78138192-78138211 | Msa0046110:CDS | 40.0% | |
| ! | AATTTGGAAGGTTCAGGTTC+AGG | - | chr1_1:78138258-78138277 | None:intergenic | 40.0% |
| ACTTACTAGCAACAAGAAGG+GGG | - | chr1_1:78138326-78138345 | None:intergenic | 40.0% | |
| GACTTACTAGCAACAAGAAG+GGG | - | chr1_1:78138327-78138346 | None:intergenic | 40.0% | |
| !! | ATTGGCATATGATGGATGGA+AGG | - | chr1_1:78138360-78138379 | None:intergenic | 40.0% |
| ! | CACAATTTTCATTGCTGCCT+CGG | + | chr1_1:78138452-78138471 | Msa0046110:CDS | 40.0% |
| CAATAGGAATAGGTAGGTAC+AGG | - | chr1_1:78138653-78138672 | None:intergenic | 40.0% | |
| CTTCTACTCATTGCAGCTTA+TGG | + | chr1_1:78138767-78138786 | Msa0046110:intron | 40.0% | |
| CTTTACCTCTCTTCCAATGA+TGG | - | chr1_1:78138883-78138902 | None:intergenic | 40.0% | |
| ! | AGTTTTCCTGTGTGTTGGAT+TGG | + | chr1_1:78138912-78138931 | Msa0046110:intron | 40.0% |
| AATTCTCCAATCCAACACAC+AGG | - | chr1_1:78138921-78138940 | None:intergenic | 40.0% | |
| AACATTGGAGATCCAGACAA+GGG | - | chr1_1:78138951-78138970 | None:intergenic | 40.0% | |
| AAACATTGGAGATCCAGACA+AGG | - | chr1_1:78138952-78138971 | None:intergenic | 40.0% | |
| CGATATGCCAACAAATTGTC+TGG | - | chr1_1:78139051-78139070 | None:intergenic | 40.0% | |
| AGCAGACATGGTAATCTACT+TGG | - | chr1_1:78139261-78139280 | None:intergenic | 40.0% | |
| ! | CCTCTAAAAGCTTACTATCC+TGG | - | chr1_1:78139304-78139323 | None:intergenic | 40.0% |
| ! | CCAGGATAGTAAGCTTTTAG+AGG | + | chr1_1:78139301-78139320 | Msa0046110:CDS | 40.0% |
| ! | CAGCTAGTTGATTCAAGTGT+AGG | - | chr1_1:78139338-78139357 | None:intergenic | 40.0% |
| CTACACTTGAATCAACTAGC+TGG | + | chr1_1:78139336-78139355 | Msa0046110:CDS | 40.0% | |
| ! | GATTTGCTTGTCCGGTGAAT+TGG | + | chr1_1:78137989-78138008 | Msa0046110:five_prime_UTR | 45.0% |
| ! | GATGAAGATGGGTTTGGTTC+TGG | - | chr1_1:78138097-78138116 | None:intergenic | 45.0% |
| TAGTTGTGACGCGTCCATAT+TGG | - | chr1_1:78138146-78138165 | None:intergenic | 45.0% | |
| GTGAGCAATTTGGAAGGTTC+AGG | - | chr1_1:78138264-78138283 | None:intergenic | 45.0% | |
| TTCTATATGGATGGTTGGCG+TGG | + | chr1_1:78138414-78138433 | Msa0046110:CDS | 45.0% | |
| CGAGGCAGCAATGAAAATTG+TGG | - | chr1_1:78138454-78138473 | None:intergenic | 45.0% | |
| ATCAAGCCAATCAGTAACCG+AGG | - | chr1_1:78138472-78138491 | None:intergenic | 45.0% | |
| !! | TCGGTTACTGATTGGCTTGA+TGG | + | chr1_1:78138471-78138490 | Msa0046110:CDS | 45.0% |
| TGATGGCTATATTGCTCGCA+AGG | + | chr1_1:78138488-78138507 | Msa0046110:CDS | 45.0% | |
| CTTAGATCCTGTTGCTGACA+AGG | + | chr1_1:78138625-78138644 | Msa0046110:CDS | 45.0% | |
| TGTACTAGACCCTTGGATGT+TGG | + | chr1_1:78138813-78138832 | Msa0046110:CDS | 45.0% | |
| GCAAAGACACCAACATCCAA+GGG | - | chr1_1:78138825-78138844 | None:intergenic | 45.0% | |
| AGATTACCATGTCTGCTGTC+AGG | + | chr1_1:78139264-78139283 | Msa0046110:intron | 45.0% | |
| GATTACCATGTCTGCTGTCA+GGG | + | chr1_1:78139265-78139284 | Msa0046110:intron | 45.0% | |
| ! | GATTTGCTTGTCCGGTGAAT+TGG | + | chr1_1:78137989-78138008 | Msa0046110:five_prime_UTR | 45.0% |
| ! | GATGAAGATGGGTTTGGTTC+TGG | - | chr1_1:78138097-78138116 | None:intergenic | 45.0% |
| TAGTTGTGACGCGTCCATAT+TGG | - | chr1_1:78138146-78138165 | None:intergenic | 45.0% | |
| GTGAGCAATTTGGAAGGTTC+AGG | - | chr1_1:78138264-78138283 | None:intergenic | 45.0% | |
| TTCTATATGGATGGTTGGCG+TGG | + | chr1_1:78138414-78138433 | Msa0046110:CDS | 45.0% | |
| CGAGGCAGCAATGAAAATTG+TGG | - | chr1_1:78138454-78138473 | None:intergenic | 45.0% | |
| ATCAAGCCAATCAGTAACCG+AGG | - | chr1_1:78138472-78138491 | None:intergenic | 45.0% | |
| !! | TCGGTTACTGATTGGCTTGA+TGG | + | chr1_1:78138471-78138490 | Msa0046110:CDS | 45.0% |
| TGATGGCTATATTGCTCGCA+AGG | + | chr1_1:78138488-78138507 | Msa0046110:CDS | 45.0% | |
| CTTAGATCCTGTTGCTGACA+AGG | + | chr1_1:78138625-78138644 | Msa0046110:CDS | 45.0% | |
| TGTACTAGACCCTTGGATGT+TGG | + | chr1_1:78138813-78138832 | Msa0046110:CDS | 45.0% | |
| GCAAAGACACCAACATCCAA+GGG | - | chr1_1:78138825-78138844 | None:intergenic | 45.0% | |
| AGATTACCATGTCTGCTGTC+AGG | + | chr1_1:78139264-78139283 | Msa0046110:intron | 45.0% | |
| GATTACCATGTCTGCTGTCA+GGG | + | chr1_1:78139265-78139284 | Msa0046110:intron | 45.0% | |
| !! | GATGGGTTTGGTTCTGGACT+TGG | - | chr1_1:78138091-78138110 | None:intergenic | 50.0% |
| TTGTGACGCGTCCATATTGG+TGG | - | chr1_1:78138143-78138162 | None:intergenic | 50.0% | |
| ! | TCAGGTTGTTCTGGTTGTGG+TGG | - | chr1_1:78138240-78138259 | None:intergenic | 50.0% |
| !! | GGTTCAGGTTGTTCTGGTTG+TGG | - | chr1_1:78138243-78138262 | None:intergenic | 50.0% |
| !! | GGTTCAGGTTCAGGTTGTTC+TGG | - | chr1_1:78138249-78138268 | None:intergenic | 50.0% |
| GGCAGAGTGAGCAATTTGGA+AGG | - | chr1_1:78138270-78138289 | None:intergenic | 50.0% | |
| CGACCAAGAGTGAGAATGGT+GGG | - | chr1_1:78138291-78138310 | None:intergenic | 50.0% | |
| ACGACCAAGAGTGAGAATGG+TGG | - | chr1_1:78138292-78138311 | None:intergenic | 50.0% | |
| GACACGACCAAGAGTGAGAA+TGG | - | chr1_1:78138295-78138314 | None:intergenic | 50.0% | |
| TTGCTGCCTCGGTTACTGAT+TGG | + | chr1_1:78138463-78138482 | Msa0046110:CDS | 50.0% | |
| ACAGGTACCTTGTCAGCAAC+AGG | - | chr1_1:78138635-78138654 | None:intergenic | 50.0% | |
| GGCAAAGACACCAACATCCA+AGG | - | chr1_1:78138826-78138845 | None:intergenic | 50.0% | |
| ! | TGATGGCGATGGCAGGTATA+GGG | - | chr1_1:78138866-78138885 | None:intergenic | 50.0% |
| ! | ATGATGGCGATGGCAGGTAT+AGG | - | chr1_1:78138867-78138886 | None:intergenic | 50.0% |
| ATACCTGCCATCGCCATCAT+TGG | + | chr1_1:78138867-78138886 | Msa0046110:CDS | 50.0% | |
| ! | CTCTCTTCCAATGATGGCGA+TGG | - | chr1_1:78138877-78138896 | None:intergenic | 50.0% |
| CATCGCCATCATTGGAAGAG+AGG | + | chr1_1:78138875-78138894 | Msa0046110:CDS | 50.0% | |
| CATGTCTGCTGTCAGGGAAT+GGG | + | chr1_1:78139271-78139290 | Msa0046110:CDS | 50.0% | |
| !! | GATGGGTTTGGTTCTGGACT+TGG | - | chr1_1:78138091-78138110 | None:intergenic | 50.0% |
| TTGTGACGCGTCCATATTGG+TGG | - | chr1_1:78138143-78138162 | None:intergenic | 50.0% | |
| ! | TCAGGTTGTTCTGGTTGTGG+TGG | - | chr1_1:78138240-78138259 | None:intergenic | 50.0% |
| !! | GGTTCAGGTTGTTCTGGTTG+TGG | - | chr1_1:78138243-78138262 | None:intergenic | 50.0% |
| !! | GGTTCAGGTTCAGGTTGTTC+TGG | - | chr1_1:78138249-78138268 | None:intergenic | 50.0% |
| GGCAGAGTGAGCAATTTGGA+AGG | - | chr1_1:78138270-78138289 | None:intergenic | 50.0% | |
| CGACCAAGAGTGAGAATGGT+GGG | - | chr1_1:78138291-78138310 | None:intergenic | 50.0% | |
| ACGACCAAGAGTGAGAATGG+TGG | - | chr1_1:78138292-78138311 | None:intergenic | 50.0% | |
| GACACGACCAAGAGTGAGAA+TGG | - | chr1_1:78138295-78138314 | None:intergenic | 50.0% | |
| TTGCTGCCTCGGTTACTGAT+TGG | + | chr1_1:78138463-78138482 | Msa0046110:CDS | 50.0% | |
| ACAGGTACCTTGTCAGCAAC+AGG | - | chr1_1:78138635-78138654 | None:intergenic | 50.0% | |
| GGCAAAGACACCAACATCCA+AGG | - | chr1_1:78138826-78138845 | None:intergenic | 50.0% | |
| ! | TGATGGCGATGGCAGGTATA+GGG | - | chr1_1:78138866-78138885 | None:intergenic | 50.0% |
| ! | ATGATGGCGATGGCAGGTAT+AGG | - | chr1_1:78138867-78138886 | None:intergenic | 50.0% |
| ATACCTGCCATCGCCATCAT+TGG | + | chr1_1:78138867-78138886 | Msa0046110:CDS | 50.0% | |
| ! | CTCTCTTCCAATGATGGCGA+TGG | - | chr1_1:78138877-78138896 | None:intergenic | 50.0% |
| CATCGCCATCATTGGAAGAG+AGG | + | chr1_1:78138875-78138894 | Msa0046110:CDS | 50.0% | |
| CATGTCTGCTGTCAGGGAAT+GGG | + | chr1_1:78139271-78139290 | Msa0046110:CDS | 50.0% | |
| AGCGGTTGCGCTCAGTTTCA+AGG | - | chr1_1:78138028-78138047 | None:intergenic | 55.0% | |
| !! | GGGTTTGGTTCTGGACTTGG+CGG | - | chr1_1:78138088-78138107 | None:intergenic | 55.0% |
| GGTGGGCAGAGTGAGCAATT+TGG | - | chr1_1:78138274-78138293 | None:intergenic | 55.0% | |
| CTGCCCACCATTCTCACTCT+TGG | + | chr1_1:78138285-78138304 | Msa0046110:CDS | 55.0% | |
| AGCAACAAGAAGGGGGACTG+CGG | - | chr1_1:78138319-78138338 | None:intergenic | 55.0% | |
| GCTTATGGTTGCCGCCACAT+TGG | + | chr1_1:78138782-78138801 | Msa0046110:intron | 55.0% | |
| GTGTCTTTGCCCAACTACCC+TGG | + | chr1_1:78138835-78138854 | Msa0046110:CDS | 55.0% | |
| AGGGAGTAGCCAGGGTAGTT+GGG | - | chr1_1:78138847-78138866 | None:intergenic | 55.0% | |
| TAGGGAGTAGCCAGGGTAGT+TGG | - | chr1_1:78138848-78138867 | None:intergenic | 55.0% | |
| GCAGGTATAGGGAGTAGCCA+GGG | - | chr1_1:78138855-78138874 | None:intergenic | 55.0% | |
| ! | CTTCCAATGATGGCGATGGC+AGG | - | chr1_1:78138873-78138892 | None:intergenic | 55.0% |
| CCATTCCCTGACAGCAGACA+TGG | - | chr1_1:78139273-78139292 | None:intergenic | 55.0% | |
| CCATGTCTGCTGTCAGGGAA+TGG | + | chr1_1:78139270-78139289 | Msa0046110:CDS | 55.0% | |
| AGCGGTTGCGCTCAGTTTCA+AGG | - | chr1_1:78138028-78138047 | None:intergenic | 55.0% | |
| !! | GGGTTTGGTTCTGGACTTGG+CGG | - | chr1_1:78138088-78138107 | None:intergenic | 55.0% |
| GGTGGGCAGAGTGAGCAATT+TGG | - | chr1_1:78138274-78138293 | None:intergenic | 55.0% | |
| CTGCCCACCATTCTCACTCT+TGG | + | chr1_1:78138285-78138304 | Msa0046110:CDS | 55.0% | |
| AGCAACAAGAAGGGGGACTG+CGG | - | chr1_1:78138319-78138338 | None:intergenic | 55.0% | |
| GCTTATGGTTGCCGCCACAT+TGG | + | chr1_1:78138782-78138801 | Msa0046110:intron | 55.0% | |
| GTGTCTTTGCCCAACTACCC+TGG | + | chr1_1:78138835-78138854 | Msa0046110:CDS | 55.0% | |
| AGGGAGTAGCCAGGGTAGTT+GGG | - | chr1_1:78138847-78138866 | None:intergenic | 55.0% | |
| TAGGGAGTAGCCAGGGTAGT+TGG | - | chr1_1:78138848-78138867 | None:intergenic | 55.0% | |
| GCAGGTATAGGGAGTAGCCA+GGG | - | chr1_1:78138855-78138874 | None:intergenic | 55.0% | |
| ! | CTTCCAATGATGGCGATGGC+AGG | - | chr1_1:78138873-78138892 | None:intergenic | 55.0% |
| CCATTCCCTGACAGCAGACA+TGG | - | chr1_1:78139273-78139292 | None:intergenic | 55.0% | |
| CCATGTCTGCTGTCAGGGAA+TGG | + | chr1_1:78139270-78139289 | Msa0046110:CDS | 55.0% | |
| ACTTGGCGGCAGTGGCTGAA+CGG | - | chr1_1:78138074-78138093 | None:intergenic | 60.0% | |
| GGCAGGTATAGGGAGTAGCC+AGG | - | chr1_1:78138856-78138875 | None:intergenic | 60.0% | |
| ACTTGGCGGCAGTGGCTGAA+CGG | - | chr1_1:78138074-78138093 | None:intergenic | 60.0% | |
| GGCAGGTATAGGGAGTAGCC+AGG | - | chr1_1:78138856-78138875 | None:intergenic | 60.0% | |
| !! | GGTTCTGGACTTGGCGGCAG+TGG | - | chr1_1:78138082-78138101 | None:intergenic | 65.0% |
| CAGGGAATGGGCAGCTTCCC+AGG | + | chr1_1:78139283-78139302 | Msa0046110:CDS | 65.0% | |
| !! | GGTTCTGGACTTGGCGGCAG+TGG | - | chr1_1:78138082-78138101 | None:intergenic | 65.0% |
| CAGGGAATGGGCAGCTTCCC+AGG | + | chr1_1:78139283-78139302 | Msa0046110:CDS | 65.0% | |
| TGGCGGCAGTGGCTGAACGG+AGG | - | chr1_1:78138071-78138090 | None:intergenic | 70.0% | |
| TGGCGGCAGTGGCTGAACGG+AGG | - | chr1_1:78138071-78138090 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 78137866 | 78139364 | 78137866 | ID=Msa0046110;Name=Msa0046110 |
| chr1_1 | mRNA | 78137866 | 78139364 | 78137866 | ID=Msa0046110-mRNA-1;Parent=Msa0046110;Name=Msa0046110-mRNA-1;_AED=0.16;_eAED=0.16;_QI=149|0.25|0.2|1|1|1|5|0|228 |
| chr1_1 | exon | 78137866 | 78138339 | 78137866 | ID=Msa0046110-mRNA-1:exon:26828;Parent=Msa0046110-mRNA-1 |
| chr1_1 | exon | 78138412 | 78138509 | 78138412 | ID=Msa0046110-mRNA-1:exon:26829;Parent=Msa0046110-mRNA-1 |
| chr1_1 | exon | 78138596 | 78138646 | 78138596 | ID=Msa0046110-mRNA-1:exon:26830;Parent=Msa0046110-mRNA-1 |
| chr1_1 | exon | 78138783 | 78138896 | 78138783 | ID=Msa0046110-mRNA-1:exon:26831;Parent=Msa0046110-mRNA-1 |
| chr1_1 | exon | 78139266 | 78139364 | 78139266 | ID=Msa0046110-mRNA-1:exon:26832;Parent=Msa0046110-mRNA-1 |
| chr1_1 | five_prime_UTR | 78137866 | 78138014 | 78137866 | ID=Msa0046110-mRNA-1:five_prime_utr;Parent=Msa0046110-mRNA-1 |
| chr1_1 | CDS | 78138015 | 78138339 | 78138015 | ID=Msa0046110-mRNA-1:cds;Parent=Msa0046110-mRNA-1 |
| chr1_1 | CDS | 78138412 | 78138509 | 78138412 | ID=Msa0046110-mRNA-1:cds;Parent=Msa0046110-mRNA-1 |
| chr1_1 | CDS | 78138596 | 78138646 | 78138596 | ID=Msa0046110-mRNA-1:cds;Parent=Msa0046110-mRNA-1 |
| chr1_1 | CDS | 78138783 | 78138896 | 78138783 | ID=Msa0046110-mRNA-1:cds;Parent=Msa0046110-mRNA-1 |
| chr1_1 | CDS | 78139266 | 78139364 | 78139266 | ID=Msa0046110-mRNA-1:cds;Parent=Msa0046110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
